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ORCIDBibTeX records: Russ B. Altman
@article{DBLP:journals/corr/abs-2402-11729,
author = {Gautam Machiraju and
Alexander Derry and
Arjun D. Desai and
Neel Guha and
Amir{-}Hossein Karimi and
James Zou and
Russ B. Altman and
Christopher R{\'{e}} and
Parag Mallick},
title = {Prospector Heads: Generalized Feature Attribution for Large Models
{\&} Data},
journal = {CoRR},
volume = {abs/2402.11729},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.11729},
doi = {10.48550/ARXIV.2402.11729},
eprinttype = {arXiv},
eprint = {2402.11729},
timestamp = {Mon, 26 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-11729.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CousinsHGTTCA23,
author = {Henry Cousins and
Taryn Hall and
Yinglong Guo and
Luke Tso and
Kathy T. H. Tzeng and
Le Cong and
Russ B. Altman},
title = {Gene set proximity analysis: expanding gene set enrichment analysis
through learned geometric embeddings, with drug-repurposing applications
in {COVID-19}},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac735},
doi = {10.1093/BIOINFORMATICS/BTAC735},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CousinsHGTTCA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/YangWA23,
author = {Lu Yang and
Sheng Wang and
Russ B. Altman},
title = {POPDx: an automated framework for patient phenotyping across 392 246
individuals in the {UK} Biobank study},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {2},
pages = {245--255},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocac226},
doi = {10.1093/JAMIA/OCAC226},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/YangWA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SosaHXGFDLA23,
author = {Daniel N. Sosa and
Rogier Hintzen and
Betty Xiong and
Alex de Giorgio and
Julien Fauqueur and
Mark Davies and
Jake Lever and
Russ B. Altman},
title = {Associating biological context with protein-protein interactions through
text mining at PubMed scale},
journal = {J. Biomed. Informatics},
volume = {145},
pages = {104474},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104474},
doi = {10.1016/J.JBI.2023.104474},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/SosaHXGFDLA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/SosaSPA23,
author = {Daniel N. Sosa and
Malavika Suresh and
Christopher Potts and
Russ B. Altman},
editor = {Anna Rogers and
Jordan L. Boyd{-}Graber and
Naoaki Okazaki},
title = {Detecting Contradictory {COVID-19} Drug Efficacy Claims from Biomedical
Literature},
booktitle = {Proceedings of the 61st Annual Meeting of the Association for Computational
Linguistics (Volume 2: Short Papers), {ACL} 2023, Toronto, Canada,
July 9-14, 2023},
pages = {694--713},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.acl-short.61},
doi = {10.18653/V1/2023.ACL-SHORT.61},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/SosaSPA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GuoSA22,
author = {Margaret G. Guo and
Daniel N. Sosa and
Russ B. Altman},
title = {Challenges and opportunities in network-based solutions for biological
questions},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab437},
doi = {10.1093/BIB/BBAB437},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/GuoSA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SosaA22,
author = {Daniel N. Sosa and
Russ B. Altman},
title = {Contexts and contradictions: a roadmap for computational drug repurposing
with knowledge inference},
journal = {Briefings Bioinform.},
volume = {23},
number = {4},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac268},
doi = {10.1093/BIB/BBAC268},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/SosaA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiuWWA22,
author = {Tianyun Liu and
Shiyin Wang and
Michael Wornow and
Russ B. Altman},
title = {Construction of disease-specific cytokine profiles by associating
disease genes with immune responses},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {4},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1009497},
doi = {10.1371/JOURNAL.PCBI.1009497},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LiuWWA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-11223,
author = {Lu Yang and
Sheng Wang and
Russ B. Altman},
title = {POPDx: An Automated Framework for Patient Phenotyping across 392,
246 Individuals in the {UK} Biobank Study},
journal = {CoRR},
volume = {abs/2208.11223},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.11223},
doi = {10.48550/ARXIV.2208.11223},
eprinttype = {arXiv},
eprint = {2208.11223},
timestamp = {Mon, 29 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-11223.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-09867,
author = {Daniel N. Sosa and
Malavika Suresh and
Christopher Potts and
Russ B. Altman},
title = {Detecting Contradictory {COVID-19} Drug Efficacy Claims from Biomedical
Literature},
journal = {CoRR},
volume = {abs/2212.09867},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.09867},
doi = {10.48550/ARXIV.2212.09867},
eprinttype = {arXiv},
eprint = {2212.09867},
timestamp = {Tue, 03 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-09867.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FlynnCA21,
author = {Emily R. Flynn and
Annie Chang and
Russ B. Altman},
title = {Large-scale labeling and assessment of sex bias in publicly available
expression data},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {168},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04070-2},
doi = {10.1186/S12859-021-04070-2},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FlynnCA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SosaCKLLRA21,
author = {Daniel N. Sosa and
Binbin Chen and
Amit Kaushal and
Adam Lavertu and
Jake Lever and
Stefano E. Rensi and
Russ B. Altman},
title = {Repurposing biomedical informaticians for {COVID-19}},
journal = {J. Biomed. Informatics},
volume = {115},
pages = {103673},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103673},
doi = {10.1016/J.JBI.2021.103673},
timestamp = {Fri, 20 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SosaCKLLRA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WongPCTLMLPAK21,
author = {Mike Wong and
Paul Previde and
Jack Cole and
Brook Thomas and
Nayana Laxmeshwar and
Emily K. Mallory and
Jake Lever and
Dragutin Petkovic and
Russ B. Altman and
Anagha Kulkarni},
title = {Search and visualization of gene-drug-disease interactions for pharmacogenomics
and precision medicine research using GeneDive},
journal = {J. Biomed. Informatics},
volume = {117},
pages = {103732},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103732},
doi = {10.1016/J.JBI.2021.103732},
timestamp = {Fri, 13 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WongPCTLMLPAK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HanSA21,
author = {Lichy Han and
Zahra N. Sayyid and
Russ B. Altman},
title = {Modeling drug response using network-based personalized treatment
prediction (NetPTP) with applications to inflammatory bowel disease},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {2},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1008631},
doi = {10.1371/JOURNAL.PCBI.1008631},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HanSA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KumarAHSMBAGAC21,
author = {Andre Kumar and
Rachael C. Aikens and
Jason Horn and
Lisa Shieh and
Mark A. Musen and
Michael Baiocchi and
Russ B. Altman and
Mary K. Goldstein and
Steven M. Asch and
Jonathan H. Chen},
title = {Randomized user testing of recommender system clinical decision support},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3576656-1.4625624/3576861-1.4625621},
timestamp = {Wed, 17 Apr 2024 11:46:53 +0200},
biburl = {https://dblp.org/rec/conf/amia/KumarAHSMBAGAC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/TownshendVSDPLB21,
author = {Raphael J. L. Townshend and
Martin V{\"{o}}gele and
Patricia Suriana and
Alexander Derry and
Alexander S. Powers and
Yianni Laloudakis and
Sidhika Balachandar and
Bowen Jing and
Brandon M. Anderson and
Stephan Eismann and
Risi Kondor and
Russ B. Altman and
Ron O. Dror},
editor = {Joaquin Vanschoren and
Sai{-}Kit Yeung},
title = {{ATOM3D:} Tasks on Molecules in Three Dimensions},
booktitle = {Proceedings of the Neural Information Processing Systems Track on
Datasets and Benchmarks 1, NeurIPS Datasets and Benchmarks 2021, December
2021, virtual},
year = {2021},
url = {https://datasets-benchmarks-proceedings.neurips.cc/paper/2021/hash/c45147dee729311ef5b5c3003946c48f-Abstract-round1.html},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/TownshendVSDPLB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/McInnesA21,
author = {Gregory McInnes and
Russ B. Altman},
title = {Drug Response Pharmacogenetics for 200, 000 {UK} Biobank Participants},
booktitle = {Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2021},
publisher = {WorldScientific},
year = {2021},
url = {https://doi.org/10.1142/9789811232701\_0018},
doi = {10.1142/9789811232701\_0018},
timestamp = {Thu, 01 Apr 2021 17:03:34 +0200},
biburl = {https://dblp.org/rec/conf/psb/McInnesA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-07258,
author = {Rishi Bommasani and
Drew A. Hudson and
Ehsan Adeli and
Russ B. Altman and
Simran Arora and
Sydney von Arx and
Michael S. Bernstein and
Jeannette Bohg and
Antoine Bosselut and
Emma Brunskill and
Erik Brynjolfsson and
Shyamal Buch and
Dallas Card and
Rodrigo Castellon and
Niladri S. Chatterji and
Annie S. Chen and
Kathleen Creel and
Jared Quincy Davis and
Dorottya Demszky and
Chris Donahue and
Moussa Doumbouya and
Esin Durmus and
Stefano Ermon and
John Etchemendy and
Kawin Ethayarajh and
Li Fei{-}Fei and
Chelsea Finn and
Trevor Gale and
Lauren Gillespie and
Karan Goel and
Noah D. Goodman and
Shelby Grossman and
Neel Guha and
Tatsunori Hashimoto and
Peter Henderson and
John Hewitt and
Daniel E. Ho and
Jenny Hong and
Kyle Hsu and
Jing Huang and
Thomas Icard and
Saahil Jain and
Dan Jurafsky and
Pratyusha Kalluri and
Siddharth Karamcheti and
Geoff Keeling and
Fereshte Khani and
Omar Khattab and
Pang Wei Koh and
Mark S. Krass and
Ranjay Krishna and
Rohith Kuditipudi and
et al.},
title = {On the Opportunities and Risks of Foundation Models},
journal = {CoRR},
volume = {abs/2108.07258},
year = {2021},
url = {https://arxiv.org/abs/2108.07258},
eprinttype = {arXiv},
eprint = {2108.07258},
timestamp = {Fri, 17 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2108-07258.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MalloryRRARBA20,
author = {Emily K. Mallory and
Matthieu de Rochemonteix and
Alexander Ratner and
Ambika Acharya and
Christopher R{\'{e}} and
Roselie A. Bright and
Russ B. Altman},
title = {Extracting chemical reactions from text using Snorkel},
journal = {{BMC} Bioinform.},
volume = {21},
number = {1},
pages = {217},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03542-1},
doi = {10.1186/S12859-020-03542-1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MalloryRRARBA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/YuWBRASK20,
author = {Kun{-}Hsing Yu and
Feiran Wang and
Gerald J. Berry and
Christopher R{\'{e}} and
Russ B. Altman and
Michael Snyder and
Isaac S. Kohane},
title = {Classifying non-small cell lung cancer types and transcriptomic subtypes
using convolutional neural networks},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {5},
pages = {757--769},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocz230},
doi = {10.1093/JAMIA/OCZ230},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/YuWBRASK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KumarAHSCMSMBAG20,
author = {Andre Kumar and
Rachael C. Aikens and
Jason Hom and
Lisa Shieh and
Jonathan Chiang and
David Morales and
Divya Saini and
Mark A. Musen and
Michael T. M. Baiocchi and
Russ B. Altman and
Mary K. Goldstein and
Steven M. Asch and
Jonathan H. Chen},
title = {OrderRex clinical user testing: a randomized trial of recommender
system decision support on simulated cases},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {12},
pages = {1850--1859},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa190},
doi = {10.1093/JAMIA/OCAA190},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KumarAHSCMSMBAG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/WangFA20,
author = {Sheng Wang and
Emily R. Flynn and
Russ B. Altman},
title = {Gaussian embedding for large-scale gene set analysis},
journal = {Nat. Mach. Intell.},
volume = {2},
number = {7},
pages = {387--395},
year = {2020},
url = {https://doi.org/10.1038/s42256-020-0193-2},
doi = {10.1038/S42256-020-0193-2},
timestamp = {Wed, 13 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/WangFA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/McInnesDSCLTGAW20,
author = {Gregory McInnes and
Rachel Dalton and
Katrin Sangkuhl and
Michelle Whirl Carrillo and
Seung{-}been Lee and
Philip S. Tsao and
Andrea Gaedigk and
Russ B. Altman and
Erica L. Woodahl},
title = {Transfer learning enables prediction of {CYP2D6} haplotype function},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {11},
pages = {1008399},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1008399},
doi = {10.1371/JOURNAL.PCBI.1008399},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/McInnesDSCLTGAW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/SosaDGWBA20,
author = {Daniel N. Sosa and
Alexander Derry and
Margaret G. Guo and
Eric Wei and
Connor Brinton and
Russ B. Altman},
title = {A Literature-Based Knowledge Graph Embedding Method for Identifying
Drug RepurposingOpportunities in Rare Diseases},
booktitle = {Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA,
January 3-7, 2020},
pages = {463--474},
year = {2020},
url = {https://psb.stanford.edu/psb-online/proceedings/psb20/Sosa.pdf},
timestamp = {Wed, 23 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/SosaDGWBA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LeverBGHSWCWKA20,
author = {Jake Lever and
Julia M. Barbarino and
Li Gong and
Rachel Huddart and
Katrin Sangkuhl and
Ryan Whaley and
Michelle Whirl Carrillo and
Mark Woon and
Teri E. Klein and
Russ B. Altman},
title = {PGxMine: Text Mining for Curation of PharmGKB},
booktitle = {Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA,
January 3-7, 2020},
pages = {611--622},
year = {2020},
url = {https://psb.stanford.edu/psb-online/proceedings/psb20/Lever.pdf},
timestamp = {Fri, 13 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/LeverBGHSWCWKA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PershadGA20,
author = {Yash Pershad and
Margaret G. Guo and
Russ B. Altman},
title = {Pathway and Network Embedding Methods for Prioritizing Psychiatric
Drugs},
booktitle = {Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA,
January 3-7, 2020},
pages = {671--682},
year = {2020},
url = {https://psb.stanford.edu/psb-online/proceedings/psb20/Pershad.pdf},
timestamp = {Wed, 23 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PershadGA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2021,
title = {Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2021},
publisher = {WorldScientific},
year = {2020},
url = {https://doi.org/10.1142/12171},
doi = {10.1142/12171},
isbn = {9789811232695},
timestamp = {Thu, 01 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-04035,
author = {Raphael J. L. Townshend and
Martin V{\"{o}}gele and
Patricia Suriana and
Alexander Derry and
Alexander S. Powers and
Yianni Laloudakis and
Sidhika Balachandar and
Brandon M. Anderson and
Stephan Eismann and
Risi Kondor and
Russ B. Altman and
Ron O. Dror},
title = {{ATOM3D:} Tasks On Molecules in Three Dimensions},
journal = {CoRR},
volume = {abs/2012.04035},
year = {2020},
url = {https://arxiv.org/abs/2012.04035},
eprinttype = {arXiv},
eprint = {2012.04035},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2012-04035.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoLMKJBZJA19,
author = {Yu{-}Chen Lo and
Tianyun Liu and
Kari M. Morrissey and
Satoko Kakiuchi{-}Kiyota and
Adam R. Johnson and
Fabio Broccatelli and
Yu Zhong and
Amita Joshi and
Russ B. Altman},
title = {Computational analysis of kinase inhibitor selectivity using structural
knowledge},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {235--242},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty582},
doi = {10.1093/BIOINFORMATICS/BTY582},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoLMKJBZJA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorngA19,
author = {Wen Torng and
Russ B. Altman},
title = {High precision protein functional site detection using 3D convolutional
neural networks},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1503--1512},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty813},
doi = {10.1093/BIOINFORMATICS/BTY813},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorngA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WilsonWCSPA19,
author = {Jennifer L. Wilson and
Mike Wong and
Ajinkya Chalke and
Nicholas Stepanov and
Dragutin Petkovic and
Russ B. Altman},
title = {PathFXweb: a web application for identifying drug safety and efficacy
phenotypes},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4504--4506},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz419},
doi = {10.1093/BIOINFORMATICS/BTZ419},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WilsonWCSPA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LavertuA19,
author = {Adam Lavertu and
Russ B. Altman},
title = {RedMed: Extending drug lexicons for social media applications},
journal = {J. Biomed. Informatics},
volume = {99},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103307},
doi = {10.1016/J.JBI.2019.103307},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LavertuA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/TorngA19,
author = {Wen Torng and
Russ B. Altman},
title = {Graph Convolutional Neural Networks for Predicting Drug-Target Interactions},
journal = {J. Chem. Inf. Model.},
volume = {59},
number = {10},
pages = {4131--4149},
year = {2019},
url = {https://doi.org/10.1021/acs.jcim.9b00628},
doi = {10.1021/ACS.JCIM.9B00628},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/TorngA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuWBRASK19,
author = {Kun{-}Hsing Yu and
Feiran Wang and
Gerald J. Berry and
Christopher R{\'{e}} and
Russ B. Altman and
Michael Snyder and
Isaac S. Kohane},
title = {Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic
Subtypes using Convolutional Neural Networks},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t006-1.4574499/t006-1.4574500/3199450-1.4574507/3202228-1.4574504},
timestamp = {Wed, 17 Apr 2024 11:47:08 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuWBRASK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangFA19,
author = {Sheng Wang and
Emily R. Flynn and
Russ B. Altman},
editor = {Lenore J. Cowen},
title = {GRep: Gene Set Representation via Gaussian Embedding},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {318--319},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Wed, 13 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangFA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2019,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2019},
year = {2019},
url = {http://psb.stanford.edu/psb-online/proceedings/psb19/},
timestamp = {Tue, 15 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanMBGSKAA18,
author = {Lichy Han and
Mateusz Maciejewski and
Christoph Brockel and
William Gordon and
Scott B. Snapper and
Joshua R. Korzenik and
Lovisa Afzelius and
Russ B. Altman},
title = {A probabilistic pathway score {(PROPS)} for classification with applications
to inflammatory bowel disease},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {985--993},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx651},
doi = {10.1093/BIOINFORMATICS/BTX651},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanMBGSKAA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PerchaA18,
author = {Bethany Percha and
Russ B. Altman},
title = {A global network of biomedical relationships derived from text},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2614--2624},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty114},
doi = {10.1093/BIOINFORMATICS/BTY114},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PerchaA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhouA18,
author = {Weizhuang Zhou and
Russ B. Altman},
title = {Data-driven human transcriptomic modules determined by independent
component analysis},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {327:1--327:25},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2338-4},
doi = {10.1186/S12859-018-2338-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PerchaZBRAL18,
author = {Bethany Percha and
Yuhao Zhang and
Selen Bozkurt and
Daniel L. Rubin and
Russ B. Altman and
Curtis P. Langlotz},
title = {Expanding a radiology lexicon using contextual patterns in radiology
reports},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {6},
pages = {679--685},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx152},
doi = {10.1093/JAMIA/OCX152},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PerchaZBRAL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WilsonRLASRPA18,
author = {Jennifer L. Wilson and
Rebecca Racz and
Tianyun Liu and
Oluseyi Adeniyi and
Jielin Sun and
Anuradha Ramamoorthy and
Michael Pacanowski and
Russ B. Altman},
title = {PathFX provides mechanistic insights into drug efficacy and safety
for regulatory review and therapeutic development},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {12},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1006614},
doi = {10.1371/JOURNAL.PCBI.1006614},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WilsonRLASRPA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuBRRAS18,
author = {Kun{-}Hsing Yu and
Gerald J. Berry and
Daniel L. Rubin and
Christopher R{\'{e}} and
Russ B. Altman and
Michael Snyder},
title = {Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation
and Prognosis by Integrating Omics and Histopathology},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2973466-1.4263237/2976036-1.4263234},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuBRRAS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MalloryARTBA18,
author = {Emily K. Mallory and
Ambika Acharya and
Stefano E. Rensi and
Peter J Turnbaugh and
Roselie A. Bright and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Chemical reaction vector embeddings: towards predicting drug metabolism
in the human gut microbiome},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {56--67},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/mallory.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MalloryARTBA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PetkovicAWV18,
author = {Dragutin Petkovic and
Russ B. Altman and
Mike Wong and
Arthur Vigil},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Improving the explainability of Random Forest classifier - user centered
approach},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {204--215},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/petkovic.pdf},
timestamp = {Fri, 17 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/PetkovicAWV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PrevideTWMPAK18,
author = {Paul Previde and
Brook Thomas and
Mike Wong and
Emily K. Mallory and
Dragutin Petkovic and
Russ B. Altman and
Anagha Kulkarni},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {GeneDive: {A} gene interaction search and visualization tool to facilitate
precision medicine},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {590--601},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/previde.pdf},
timestamp = {Fri, 17 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/PrevideTWMPAK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2018,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/},
timestamp = {Tue, 15 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouHA17,
author = {Weizhuang Zhou and
Lichy Han and
Russ B. Altman},
title = {Imputing gene expression to maximize platform compatibility},
journal = {Bioinform.},
volume = {33},
number = {4},
pages = {522--528},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw664},
doi = {10.1093/BIOINFORMATICS/BTW664},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouHA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TorngA17,
author = {Wen Torng and
Russ B. Altman},
title = {3D deep convolutional neural networks for amino acid environment similarity
analysis},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {302},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1702-0},
doi = {10.1186/S12859-017-1702-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TorngA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ChenAGAA17,
author = {Jonathan H. Chen and
Muthuraman Alagappan and
Mary K. Goldstein and
Steven M. Asch and
Russ B. Altman},
title = {Decaying relevance of clinical data towards future decisions in data-driven
inpatient clinical order sets},
journal = {Int. J. Medical Informatics},
volume = {102},
pages = {71--79},
year = {2017},
url = {https://doi.org/10.1016/j.ijmedinf.2017.03.006},
doi = {10.1016/J.IJMEDINF.2017.03.006},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/ChenAGAA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChenGAMA17,
author = {Jonathan H. Chen and
Mary K. Goldstein and
Steven M. Asch and
Lester W. Mackey and
Russ B. Altman},
title = {Predicting inpatient clinical order patterns with probabilistic topic
models vs conventional order sets},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {3},
pages = {472--480},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocw136},
doi = {10.1093/JAMIA/OCW136},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ChenGAMA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/HanBPAP17,
author = {Lichy Han and
Robert Ball and
Carol A. Pamer and
Russ B. Altman and
Scott Proestel},
title = {Development of an automated assessment tool for MedWatch reports in
the {FDA} adverse event reporting system},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {5},
pages = {913--920},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocx022},
doi = {10.1093/JAMIA/OCX022},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/HanBPAP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/RensiA17,
author = {Stefano E. Rensi and
Russ B. Altman},
title = {Shallow Representation Learning via Kernel {PCA} Improves {QSAR} Modelability},
journal = {J. Chem. Inf. Model.},
volume = {57},
number = {8},
pages = {1859--1867},
year = {2017},
url = {https://doi.org/10.1021/acs.jcim.6b00694},
doi = {10.1021/ACS.JCIM.6B00694},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/RensiA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuZBARRS17,
author = {Kun{-}Hsing Yu and
Ce Zhang and
Gerald J. Berry and
Russ B. Altman and
Christopher R{\'{e}} and
Daniel L. Rubin and
Michael Snyder},
title = {Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully
Automated Microscopic Pathology Image Features},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2730227-1.4259041/2731909-1.4259038},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuZBARRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/AlagappanGAAC17,
author = {Muthuraman Alagappan and
Mary K. Goldstein and
Steven M. Asch and
Russ B. Altman and
Jonathan H. Chen},
title = {Decaying Relevance of Clinical Data when Predicting Future Decisions},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a045-1.3521684},
timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
biburl = {https://dblp.org/rec/conf/cri/AlagappanGAAC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2017,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2017},
year = {2017},
url = {http://psb.stanford.edu/psb-online/proceedings/psb17/},
timestamp = {Sun, 07 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman16,
author = {Russ B. Altman},
title = {Current Progress in Bioinformatics 2016},
journal = {Briefings Bioinform.},
volume = {17},
number = {1},
pages = {1},
year = {2016},
url = {https://doi.org/10.1093/bib/bbv105},
doi = {10.1093/BIB/BBV105},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Altman16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalloryZRA16,
author = {Emily K. Mallory and
Ce Zhang and
Christopher R{\'{e}} and
Russ B. Altman},
title = {Large-scale extraction of gene interactions from full-text literature
using DeepDive},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {106--113},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv476},
doi = {10.1093/BIOINFORMATICS/BTV476},
timestamp = {Tue, 12 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalloryZRA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HillenmeyerDGCC16,
author = {Sara Hillenmeyer and
Lea K. Davis and
Eric R. Gamazon and
Edwin H. Cook Jr. and
Nancy J. Cox and
Russ B. Altman},
title = {{STAMS:} STRING-assisted module search for genome wide association
studies and application to autism},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3815--3822},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw530},
doi = {10.1093/BIOINFORMATICS/BTW530},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HillenmeyerDGCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChenPA16,
author = {Jonathan H. Chen and
Tanya Podchiyska and
Russ B. Altman},
title = {OrderRex: clinical order decision support and outcome predictions
by data-mining electronic medical records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {2},
pages = {339--348},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocv091},
doi = {10.1093/JAMIA/OCV091},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ChenPA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BagleyA16,
author = {Steven C. Bagley and
Russ B. Altman},
title = {Computing disease incidence, prevalence and comorbidity from electronic
medical records},
journal = {J. Biomed. Informatics},
volume = {63},
pages = {108--111},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.08.005},
doi = {10.1016/J.JBI.2016.08.005},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/BagleyA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BagleySCBA16,
author = {Steven C. Bagley and
Marina Sirota and
Richard O. Chen and
Atul J. Butte and
Russ B. Altman},
title = {Constraints on Biological Mechanism from Disease Comorbidity Using
Electronic Medical Records and Database of Genetic Variants},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {4},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004885},
doi = {10.1371/JOURNAL.PCBI.1004885},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BagleySCBA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ChenGAA16,
author = {Jonathan H. Chen and
Mary K. Goldstein and
Steven M. Asch and
Russ B. Altman},
title = {Usability of an Automated Recommender System for Clinical Order Entry},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t001-1.3365273/f001-1.3365274/2497982-1.3365629/2496685-1.3365624},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/ChenGAA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ChenGAMA16,
author = {Jonathan H. Chen and
Mary K. Goldstein and
Steven M. Asch and
Lester W. Mackey and
Russ B. Altman},
title = {Automated Organization of Electronic Health Record Data by Probabilistic
Topic Modeling to Inform Clinical Decision Making},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t004-1.3012641/f004-1.3012642/a064-1.3012817/a066-1.3012812},
timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
biburl = {https://dblp.org/rec/conf/cri/ChenGAMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/SolomonidesADOT16,
author = {Anthony E. Solomonides and
Russ B. Altman and
Joshua C. Denny and
Larry Ozeran and
Jessica D. Tenenbaum},
title = {The Many Meanings of Precision Medicine},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t002-1.3012976/f002-1.3012977/a007-1.3012984/a008-1.3012981},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/SolomonidesADOT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ChenGAA16,
author = {Jonathan H. Chen and
Mary K. Goldstein and
Steven M. Asch and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Dynamically Evolving Clinical Practices and Implications for Predicting
Medical Decisions},
booktitle = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
pages = {195--206},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/chen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ChenGAA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LiXA16,
author = {Yong Fuga Li and
Fuxiao Xin and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Separating the Causes and Consequences in Disease Transcriptome},
booktitle = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
pages = {381--392},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/li.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/LiXA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2016,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/},
timestamp = {Sat, 06 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MugzachPBGCA15,
author = {Omri Mugzach and
Mor Peleg and
Steven C. Bagley and
Stephen J. Guter and
Edwin H. Cook Jr. and
Russ B. Altman},
title = {An ontology for Autism Spectrum Disorder {(ASD)} to infer {ASD} phenotypes
from Autism Diagnostic Interview-Revised data},
journal = {J. Biomed. Informatics},
volume = {56},
pages = {333--347},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.06.026},
doi = {10.1016/J.JBI.2015.06.026},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/MugzachPBGCA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiuA15,
author = {Tianyun Liu and
Russ B. Altman},
title = {Relating Essential Proteins to Drug Side-Effects Using Canonical Component
Analysis: {A} Structure-Based Approach},
journal = {J. Chem. Inf. Model.},
volume = {55},
number = {7},
pages = {1483--1494},
year = {2015},
url = {https://doi.org/10.1021/acs.jcim.5b00030},
doi = {10.1021/ACS.JCIM.5B00030},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/LiuA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZhouTA15,
author = {Weizhuang Zhou and
Grace W. Tang and
Russ B. Altman},
title = {High Resolution Prediction of Calcium-Binding Sites in 3D Protein
Structures Using {FEATURE}},
journal = {J. Chem. Inf. Model.},
volume = {55},
number = {8},
pages = {1663--1672},
year = {2015},
url = {https://doi.org/10.1021/acs.jcim.5b00367},
doi = {10.1021/ACS.JCIM.5B00367},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/ZhouTA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MiguelHLTAH15,
author = {Amanda Miguel and
Jen Hsin and
Tianyun Liu and
Grace W. Tang and
Russ B. Altman and
Kerwyn Casey Huang},
title = {Variations in the Binding Pocket of an Inhibitor of the Bacterial
Division Protein FtsZ across Genotypes and Species},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {3},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004117},
doi = {10.1371/JOURNAL.PCBI.1004117},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MiguelHLTAH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PerchaA15,
author = {Bethany Percha and
Russ B. Altman},
title = {Learning the Structure of Biomedical Relationships from Unstructured
Text},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {7},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004216},
doi = {10.1371/JOURNAL.PCBI.1004216},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PerchaA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HewettCHAK15,
author = {Darla Hewett and
Michelle Whirl Carrillo and
Lawrence E. Hunter and
Russ B. Altman and
Teri E. Klein},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {A Twentieth Anniversary Tribute to {PSB}},
booktitle = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2015},
pages = {1--7},
year = {2015},
url = {http://psb.stanford.edu/psb-online/proceedings/psb15/20anniversary.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HewettCHAK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PattinGACWGHMRM15,
author = {Kristine A. Pattin and
Anna C. Greene and
Russ B. Altman and
Kevin Bretonnel Cohen and
Elizabeth Wethington and
Carsten G{\"{o}}rg and
Lawrence E. Hunter and
Spencer V. Muse and
Predrag Radivojac and
Jason H. Moore},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Training the Next Generation of Quantitative Biologists in the Era
of Big Data},
booktitle = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2015},
pages = {488--492},
year = {2015},
url = {http://psb.stanford.edu/psb-online/proceedings/psb15/wkshop-bioinfo.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PattinGACWGHMRM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2015,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2015},
year = {2015},
url = {http://psb.stanford.edu/psb-online/proceedings/psb15/},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RzhetskyBWLCAG14,
author = {Andrey Rzhetsky and
Steven C. Bagley and
Kanix Wang and
Christopher S. Lyttle and
Edwin H. Cook Jr. and
Russ B. Altman and
Robert D. Gibbons},
title = {Environmental and State-Level Regulatory Factors Affect the Incidence
of Autism and Intellectual Disability},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {3},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003518},
doi = {10.1371/JOURNAL.PCBI.1003518},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RzhetskyBWLCAG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/TangA14,
author = {Grace W. Tang and
Russ B. Altman},
title = {Knowledge-based Fragment Binding Prediction},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {4},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003589},
doi = {10.1371/JOURNAL.PCBI.1003589},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/TangA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ChenA14,
author = {Jonathan H. Chen and
Russ B. Altman},
title = {"Doctors who ordered this also ordered..." Automated physician
order recommendations and outcome predictions by data-mining electronic
medical records},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-272-1.1544855/a-273-1.1544852},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/ChenA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/DaneshjouZKBOKS14,
author = {Roxana Daneshjou and
Zachary Zappala and
Kimberly R. Kukurba and
Sean M. Boyle and
Kelly E. Ormond and
Teri E. Klein and
Michael Snyder and
Carlos D. Bustamante and
Russ B. Altman and
Stephen B. Montgomery},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {{PATH-SCAN:} {A} Reporting Tool for Identifying Clinically Actionable
Variants},
booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
pages = {229--240},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/daneshjou.pdf},
timestamp = {Mon, 15 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/DaneshjouZKBOKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PattinGAHRFM14,
author = {Kristine A. Pattin and
Anna C. Greene and
Russ B. Altman and
Lawrence E. Hunter and
David A. Ross and
James A. Foster and
Jason H. Moore},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Building the Next Generation of Quantitative Biologists},
booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
pages = {417--421},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/wkshp-nextgen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PattinGAHRFM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2014,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WhiteTSAH13,
author = {Ryen W. White and
Nicholas P. Tatonetti and
Nigam H. Shah and
Russ B. Altman and
Eric Horvitz},
title = {Web-scale pharmacovigilance: listening to signals from the crowd},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {3},
pages = {404--408},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001482},
doi = {10.1136/AMIAJNL-2012-001482},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WhiteTSAH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/TatonettiDA13,
author = {Nicholas P. Tatonetti and
Joshua C. Denny and
Russ B. Altman},
title = {Correspondence: Response to 'Use of an algorithm for identifying hidden
drug-drug interactions in adverse event reports' by Gooden \emph{et
al}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {3},
pages = {591},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001603},
doi = {10.1136/AMIAJNL-2012-001603},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/TatonettiDA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/FernaldA13,
author = {Guy Haskin Fernald and
Russ B. Altman},
title = {Using Molecular Features of Xenobiotics to Predict Hepatic Gene Expression
Response},
journal = {J. Chem. Inf. Model.},
volume = {53},
number = {10},
pages = {2765--2773},
year = {2013},
url = {https://doi.org/10.1021/ci3005868},
doi = {10.1021/CI3005868},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/FernaldA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tpds/KohlhoffPA13,
author = {Kai J. Kohlhoff and
Vijay S. Pande and
Russ B. Altman},
title = {K-Means for Parallel Architectures Using All-Prefix-Sum Sorting and
Updating Steps},
journal = {{IEEE} Trans. Parallel Distributed Syst.},
volume = {24},
number = {8},
pages = {1602--1612},
year = {2013},
url = {https://doi.org/10.1109/TPDS.2012.234},
doi = {10.1109/TPDS.2012.234},
timestamp = {Fri, 02 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tpds/KohlhoffPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MugzachPBA13,
author = {Omri Mugzach and
Mor Peleg and
Steven C. Bagley and
Russ B. Altman},
title = {Expanding the Autism Ontology to {DSM-IV} Criteria},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-365-1.582908/a-367-1.582902},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/MugzachPBA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PerchaA13,
author = {Bethany Percha and
Russ B. Altman},
title = {Inferring the semantic relationships of words within an ontology using
random indexing: applications to pharmacogenomics},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-09-1.582024/f-009-1.582025/a-404-1.582069/a-410-1.582064},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PerchaA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2013,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2013},
publisher = {World Scientific Publishing},
year = {2013},
url = {http://psb.stanford.edu/psb-online/proceedings/psb13/},
isbn = {978-1-62748-016-1},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1302-6780,
author = {Russ B. Altman and
Cheng Che Chen and
William B. Poland and
Jaswinder Pal Singh},
title = {Probabilistic Constraint Satisfaction with Non-Gaussian Noise},
journal = {CoRR},
volume = {abs/1302.6780},
year = {2013},
url = {http://arxiv.org/abs/1302.6780},
eprinttype = {arXiv},
eprint = {1302.6780},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1302-6780.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1303-1456,
author = {Russ B. Altman},
title = {A Probabilistic Algorithm for Calculating Structure: Borrowing from
Simulated Annealing},
journal = {CoRR},
volume = {abs/1303.1456},
year = {2013},
url = {http://arxiv.org/abs/1303.1456},
eprinttype = {arXiv},
eprint = {1303.1456},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1303-1456.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman12,
author = {Russ B. Altman},
title = {Editorial: Current progress in Bioinformatics 2012},
journal = {Briefings Bioinform.},
volume = {13},
number = {4},
pages = {393--394},
year = {2012},
url = {https://doi.org/10.1093/bib/bbs042},
doi = {10.1093/BIB/BBS042},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Altman12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RinaldiCGCGHSTKA12,
author = {Fabio Rinaldi and
Simon Clematide and
Yael Garten and
Michelle Whirl Carrillo and
Li Gong and
Joan M. Hebert and
Katrin Sangkuhl and
Caroline F. Thorn and
Teri E. Klein and
Russ B. Altman},
title = {Using {ODIN} for a PharmGKB revalidation experiment},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas021},
doi = {10.1093/DATABASE/BAS021},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RinaldiCGCGHSTKA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/TatonettiFA12,
author = {Nicholas P. Tatonetti and
Guy Haskin Fernald and
Russ B. Altman},
title = {A novel signal detection algorithm for identifying hidden drug-drug
interactions in adverse event reports},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {1},
pages = {79--85},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000214},
doi = {10.1136/AMIAJNL-2011-000214},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/TatonettiFA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DelpKPSA12,
author = {Scott L. Delp and
Joy P. Ku and
Vijay S. Pande and
Michael A. Sherman and
Russ B. Altman},
title = {Simbios: an {NIH} national center for physics-based simulation of
biological structures},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {2},
pages = {186--189},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000488},
doi = {10.1136/AMIAJNL-2011-000488},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/DelpKPSA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/CouletCA12,
author = {Adrien Coulet and
K. Bretonnel Cohen and
Russ B. Altman},
title = {The state of the art in text mining and natural language processing
for pharmacogenomics},
journal = {J. Biomed. Informatics},
volume = {45},
number = {5},
pages = {825--826},
year = {2012},
url = {https://doi.org/10.1016/j.jbi.2012.08.001},
doi = {10.1016/J.JBI.2012.08.001},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/CouletCA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Altman12,
author = {Russ B. Altman},
title = {Introduction to Translational Bioinformatics Collection},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {12},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002796},
doi = {10.1371/JOURNAL.PCBI.1002796},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Altman12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KarczewskiDA12,
author = {Konrad J. Karczewski and
Roxana Daneshjou and
Russ B. Altman},
title = {Chapter 7: Pharmacogenomics},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {12},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002817},
doi = {10.1371/JOURNAL.PCBI.1002817},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/KarczewskiDA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/KarczewskiTCTDS12,
author = {Konrad J. Karczewski and
Robert P. Tirrell and
Pablo Cordero and
Nicholas P. Tatonetti and
Joel T. Dudley and
Keyan Salari and
Michael Snyder and
Russ B. Altman and
Stuart K. Kim},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Interpretome: {A} Freely Available, Modular, and Secure Personal Genome
Interpretation Engine},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {339--350},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/karczewski.pdf},
timestamp = {Mon, 15 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/KarczewskiTCTDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PerchaGA12,
author = {Bethany Percha and
Yael Garten and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Discovery and Explanation of Drug-Drug Interactions via Text Mining},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {410--421},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/percha.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PerchaGA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/RitchieCCWKA12,
author = {Marylyn D. Ritchie and
Nancy J. Cox and
Cheng Cheng and
Scott Weiss and
Teri E. Klein and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Systems Pharmacogenomics-Bridging the Gap},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {442},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/wkshop-pharma.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/RitchieCCWKA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2012,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/},
isbn = {978-1-61839-811-6},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2012.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FernaldCDKA11,
author = {Guy Haskin Fernald and
Emidio Capriotti and
Roxana Daneshjou and
Konrad J. Karczewski and
Russ B. Altman},
title = {Genome Analysis},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1741--1748},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr295},
doi = {10.1093/BIOINFORMATICS/BTR295},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FernaldCDKA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KohlhoffSHPA11,
author = {Kai J. Kohlhoff and
Marc H. Sosnick and
William T. Hsu and
Vijay S. Pande and
Russ B. Altman},
title = {{CAMPAIGN:} an open-source library of GPU-accelerated data clustering
algorithms},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2321--2322},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr386},
doi = {10.1093/BIOINFORMATICS/BTR386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KohlhoffSHPA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FernaldCDKA11a,
author = {Guy Haskin Fernald and
Emidio Capriotti and
Roxana Daneshjou and
Konrad J. Karczewski and
Russ B. Altman},
title = {Bioinformatics challenges for personalized medicine},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2323},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr408},
doi = {10.1093/BIOINFORMATICS/BTR408},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FernaldCDKA11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CouletGDAMS11,
author = {Adrien Coulet and
Yael Garten and
Michel Dumontier and
Russ B. Altman and
Mark A. Musen and
Nigam H. Shah},
title = {Integration and publication of heterogeneous text-mined relationships
on the Semantic Web},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-2}},
pages = {S10},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S2/S10},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/CouletGDAMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CapriottiA11,
author = {Emidio Capriotti and
Russ B. Altman},
title = {Improving the prediction of disease-related variants using protein
three-dimensional structure},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-4}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S4-S3},
doi = {10.1186/1471-2105-12-S4-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CapriottiA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/AltmanM11,
author = {Russ B. Altman and
Katharine S. Miller},
title = {2010 Translational bioinformatics year in review},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {4},
pages = {358--366},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000328},
doi = {10.1136/AMIAJNL-2011-000328},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/AltmanM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiuA11,
author = {Tianyun Liu and
Russ B. Altman},
title = {Using Multiple Microenvironments to Find Similar Ligand-Binding Sites:
Application to Kinase Inhibitor Binding},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {12},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002326},
doi = {10.1371/JOURNAL.PCBI.1002326},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LiuA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FloresSBEA11,
author = {Samuel Coulbourn Flores and
Michael A. Sherman and
Christopher M. Bruns and
Peter K. Eastman and
Russ B. Altman},
title = {Fast Flexible Modeling of {RNA} Structure Using Internal Coordinates},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {8},
number = {5},
pages = {1247--1257},
year = {2011},
url = {https://doi.org/10.1109/TCBB.2010.104},
doi = {10.1109/TCBB.2010.104},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FloresSBEA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/FloresA11,
author = {Samuel Coulbourn Flores and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Structural insights into Pre-Translocation Ribosome Motions},
booktitle = {Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 3-7 January 2011},
pages = {205--216},
publisher = {World Scientific Publishing},
year = {2011},
url = {http://psb.stanford.edu/psb-online/proceedings/psb11/flores.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/FloresA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2011,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 3-7 January 2011},
publisher = {World Scientific Publishing},
year = {2011},
url = {http://psb.stanford.edu/psb-online/proceedings/psb11/},
isbn = {978-981-4335-04-1},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman10,
author = {Russ B. Altman},
title = {Editorial: Current progress in Bioinformatics 2010},
journal = {Briefings Bioinform.},
volume = {11},
number = {1},
pages = {1--2},
year = {2010},
url = {https://doi.org/10.1093/bib/bbq001},
doi = {10.1093/BIB/BBQ001},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Altman10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EngreitzMDCTAB10,
author = {Jesse M. Engreitz and
Alexander A. Morgan and
Joel Dudley and
Rong Chen and
Rahul Thathoo and
Russ B. Altman and
Atul J. Butte},
title = {Content-based microarray search using differential expression profiles},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {603},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-603},
doi = {10.1186/1471-2105-11-603},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EngreitzMDCTAB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TatonettiDSBA10,
author = {Nicholas P. Tatonetti and
Joel Dudley and
Hersh Sagreiya and
Atul J. Butte and
Russ B. Altman},
title = {An integrative method for scoring candidate genes from association
studies: application to warfarin dosing},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-9}},
pages = {S9},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S9-S9},
doi = {10.1186/1471-2105-11-S9-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TatonettiDSBA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SagreiyaA10,
author = {Hersh Sagreiya and
Russ B. Altman},
title = {The utility of general purpose versus specialty clinical databases
for research: Warfarin dose estimation from extracted clinical variables},
journal = {J. Biomed. Informatics},
volume = {43},
number = {5},
pages = {747--751},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2010.03.014},
doi = {10.1016/J.JBI.2010.03.014},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SagreiyaA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/EngreitzDMA10,
author = {Jesse M. Engreitz and
Bernie J. Daigle Jr. and
Jonathan J. Marshall and
Russ B. Altman},
title = {Independent component analysis: Mining microarray data for fundamental
human gene expression modules},
journal = {J. Biomed. Informatics},
volume = {43},
number = {6},
pages = {932--944},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2010.07.001},
doi = {10.1016/J.JBI.2010.07.001},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/EngreitzDMA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/CouletSGMA10,
author = {Adrien Coulet and
Nigam H. Shah and
Yael Garten and
Mark A. Musen and
Russ B. Altman},
title = {Using text to build semantic networks for pharmacogenomics},
journal = {J. Biomed. Informatics},
volume = {43},
number = {6},
pages = {1009--1019},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2010.08.005},
doi = {10.1016/J.JBI.2010.08.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/CouletSGMA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DaigleDMCCRTA10,
author = {Bernie J. Daigle Jr. and
Alicia Deng and
Tracey McLaughlin and
Samuel W. Cushman and
Margaret C. Cam and
Gerald Reaven and
Philip S. Tsao and
Russ B. Altman},
title = {Using Pre-existing Microarray Datasets to Increase Experimental Power:
Application to Insulin Resistance},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {3},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000718},
doi = {10.1371/JOURNAL.PCBI.1000718},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/DaigleDMCCRTA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/FloresWRA10,
author = {Samuel Flores and
Yaqi Wan and
Rick Russell and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Predicting {RNA} Structure by Multiple Template Homology Modeling},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {216--227},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/flores.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/FloresWRA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GartenTA10,
author = {Yael Garten and
Nicholas P. Tatonetti and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Improving the Prediction of Pharmacogenes Using Text-Derived Gene-Drug
Relationships},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {305--314},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/garten.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/GartenTA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/CouletSHBA10,
author = {Adrien Coulet and
Nigam H. Shah and
Lawrence Hunter and
Chitta Baral and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Extraction of Genotype-Phenotype-Drug Relationships from Text: From
Entity Recognition to Bioinformatics Application},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {485--487},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/wkshp-gdp.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/CouletSHBA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2010,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/},
isbn = {978-981-4295-29-1},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonikasRA09,
author = {Magdalena A. Jonikas and
Randall J. Radmer and
Russ B. Altman},
title = {Knowledge-based instantiation of full atomic detail into coarse-grain
{RNA} 3D structural models},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3259--3266},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp576},
doi = {10.1093/BIOINFORMATICS/BTP576},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonikasRA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GartenA09,
author = {Yael Garten and
Russ B. Altman},
title = {Pharmspresso: a text mining tool for extraction of pharmacogenomic
concepts and relationships from full text},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-2}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S2-S6},
doi = {10.1186/1471-2105-10-S2-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GartenA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/TurcottSAAD09,
author = {Robert G. Turcott and
Hersh Sagreiya and
Euan A. Ashley and
Russ B. Altman and
Amar K. Das},
title = {A General Framework for Dose Optimization},
booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2009},
publisher = {{AMIA}},
year = {2009},
url = {https://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-126-1.627373/a-127-1.627370},
timestamp = {Wed, 17 Apr 2024 11:48:10 +0200},
biburl = {https://dblp.org/rec/conf/amia/TurcottSAAD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/Shen-OrrGGRLHADB09,
author = {Shai Shen{-}Orr and
Ofir Goldberger and
Yael Garten and
Yael Rosenberg{-}Hasson and
Patricia A. Lovelace and
David L. Hirschberg and
Russ B. Altman and
Mark M. Davis and
Atul J. Butte},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive
Immune System},
booktitle = {Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 5-9 January 2009},
pages = {439--450},
year = {2009},
url = {http://psb.stanford.edu/psb-online/proceedings/psb09/shen-orr.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/Shen-OrrGGRLHADB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cikm/2009dtmbio,
editor = {Doheon Lee and
Russ B. Altman and
Min Song and
Jun Huan},
title = {Proceeding of the 3rd International Workshop on Data and Text Mining
in Bioinformatics, {DTMBIO} 2009, Hong Kong, China, November 6, 2009},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1651318},
doi = {10.1145/1651318},
isbn = {978-1-60558-803-2},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/2009dtmbio.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2009,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 5-9 January 2009},
year = {2009},
url = {http://psb.stanford.edu/psb-online/proceedings/psb09/},
isbn = {978-981-283-692-2},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaigleA08,
author = {Bernie J. Daigle Jr. and
Russ B. Altman},
title = {{M-BISON:} Microarray-based integration of data sources using networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-214},
doi = {10.1186/1471-2105-9-214},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DaigleA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PoulterRAS08,
author = {Graham L. Poulter and
Daniel L. Rubin and
Russ B. Altman and
Cathal Seoighe},
title = {MScanner: a classifier for retrieving Medline citations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-108},
doi = {10.1186/1471-2105-9-108},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PoulterRAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Hernandez-BoussardCHGOGGLTWWZAK08,
author = {Tina Hernandez{-}Boussard and
Michelle Whirl Carrillo and
Joan M. Hebert and
Li Gong and
Ryan Owen and
Mei Gong and
Winston Gor and
Feng Liu and
Chuong Truong and
Ryan Whaley and
Mark Woon and
Tina Zhou and
Russ B. Altman and
Teri E. Klein},
title = {The pharmacogenetics and pharmacogenomics knowledge base: accentuating
the knowledge},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {913--918},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm1009},
doi = {10.1093/NAR/GKM1009},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Hernandez-BoussardCHGOGGLTWWZAK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/SchmidtDSTPA08,
author = {Jeanette P. Schmidt and
Scott L. Delp and
Michael A. Sherman and
Charles A. Taylor and
Vijay S. Pande and
Russ B. Altman},
title = {The Simbios National Center: Systems Biology in Motion},
journal = {Proc. {IEEE}},
volume = {96},
number = {8},
pages = {1266--1280},
year = {2008},
url = {https://doi.org/10.1109/JPROC.2008.925454},
doi = {10.1109/JPROC.2008.925454},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/SchmidtDSTPA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YaoDMPKLBLHA08,
author = {Peggy Yao and
Ankur Dhanik and
Nathan Marz and
Ryan Propper and
Charles Kou and
Guanfeng Liu and
Henry van den Bedem and
Jean{-}Claude Latombe and
Inbal Halperin{-}Landsberg and
Russ B. Altman},
title = {Efficient Algorithms to Explore Conformation Spaces of Flexible Protein
Loops},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {5},
number = {4},
pages = {534--545},
year = {2008},
url = {https://doi.org/10.1109/TCBB.2008.96},
doi = {10.1109/TCBB.2008.96},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YaoDMPKLBLHA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/Altman08,
author = {Russ B. Altman},
editor = {Min Song and
Doheon Kim and
Luke Huan},
title = {Text mining for pharmacogenomics},
booktitle = {Proceeding of the 2nd International Workshop on Data and Text Mining
in Bioinformatics, {DTMBIO} 2008, Napa Valley, California, USA, October
30, 2008},
pages = {1--2},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1458449.1458451},
doi = {10.1145/1458449.1458451},
timestamp = {Tue, 06 Nov 2018 16:57:48 +0100},
biburl = {https://dblp.org/rec/conf/cikm/Altman08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GlazerRA08,
author = {Dariya S. Glazer and
Randall J. Radmer and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Combining Molecular Dynamics and Machine Learning to Improve Protein
Function Recognition},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {332--343},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/glazer.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/GlazerRA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2008,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/},
isbn = {978-981-277-608-2},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman07,
author = {Russ B. Altman},
title = {Current progress in bioinformatics 2007},
journal = {Briefings Bioinform.},
volume = {8},
number = {5},
pages = {277--278},
year = {2007},
url = {https://doi.org/10.1093/bib/bbm041},
doi = {10.1093/BIB/BBM041},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Altman07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YoonECMA07,
author = {Sungroh Yoon and
Jessica C. Ebert and
Eui{-}Young Chung and
Giovanni De Micheli and
Russ B. Altman},
title = {Clustering protein environments for function prediction: finding {PROSITE}
motifs in 3D},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-4}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S4-S10},
doi = {10.1186/1471-2105-8-S4-S10},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YoonECMA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/AltmanK07,
author = {Russ B. Altman and
Teri E. Klein},
title = {Biomedical informatics training at Stanford in the 21st century},
journal = {J. Biomed. Informatics},
volume = {40},
number = {1},
pages = {55--58},
year = {2007},
url = {https://doi.org/10.1016/j.jbi.2006.02.005},
doi = {10.1016/J.JBI.2006.02.005},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/AltmanK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HunterAB07,
author = {Lawrence Hunter and
Russ B. Altman and
Philip E. Bourne},
title = {The International Society for Computational Biology 10th Anniversary},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {6},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030135},
doi = {10.1371/JOURNAL.PCBI.0030135},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HunterAB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Altman07,
author = {Russ B. Altman},
title = {Combining Simulation and Machine Learning to Recognize Function in
4D},
booktitle = {Proceedings of the {IEEE} International Conference on Bioinformatics
and Biomedicine, {BIBM} 2007, Silicon Valley, CA, USA, November 2-4,
2007},
pages = {3},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBM.2007.26},
doi = {10.1109/BIBM.2007.26},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/Altman07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/XuGSDAG07,
author = {Rong Xu and
Yael Garten and
Kaustubh S. Supekar and
Amar K. Das and
Russ B. Altman and
Alan M. Garber},
editor = {Klaus A. Kuhn and
James R. Warren and
Tze{-}Yun Leong},
title = {Extracting Subject Demographic Information From Abstracts of Randomized
Clinical Trial Reports},
booktitle = {{MEDINFO} 2007 - Proceedings of the 12th World Congress on Health
(Medical) Informatics - Building Sustainable Health Systems, 20-24
August, 2007, Brisbane, Australia},
series = {Studies in Health Technology and Informatics},
volume = {129},
pages = {550--554},
publisher = {{IOS} Press},
year = {2007},
url = {https://doi.org/10.3233/978-1-58603-774-1-550},
doi = {10.3233/978-1-58603-774-1-550},
timestamp = {Mon, 22 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/XuGSDAG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2007,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2007},
publisher = {World Scientific},
year = {2007},
url = {http://psb.stanford.edu/psb-online/proceedings/psb07/},
isbn = {981-270-417-5},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman06,
author = {Russ B. Altman},
title = {Annual Progress in Bioinformatics 2006},
journal = {Briefings Bioinform.},
volume = {7},
number = {3},
pages = {209--210},
year = {2006},
url = {https://doi.org/10.1093/bib/bbl029},
doi = {10.1093/BIB/BBL029},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Altman06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/PhuongLA06,
author = {Tu Minh Phuong and
Zhen Lin and
Russ B. Altman},
title = {Choosing Snps Using Feature Selection},
journal = {J. Bioinform. Comput. Biol.},
volume = {4},
number = {2},
pages = {241--258},
year = {2006},
url = {https://doi.org/10.1142/S0219720006001941},
doi = {10.1142/S0219720006001941},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/PhuongLA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/CannataMA06,
author = {Nicola Cannata and
Emanuela Merelli and
Russ B. Altman},
title = {Correction: Time to Organize the Bioinformatics Resourceome},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {2},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020020},
doi = {10.1371/JOURNAL.PCBI.0020020},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/CannataMA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DelpAA06,
author = {Scott L. Delp and
F. Clayton Anderson and
Russ B. Altman},
title = {Physics-based simulation of biological structures},
booktitle = {Proceedings of the 2006 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Arlington, VA, USA, 6-9 April 2006},
pages = {802--805},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/ISBI.2006.1625038},
doi = {10.1109/ISBI.2006.1625038},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/DelpAA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2006,
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/},
isbn = {981-256-463-2},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman05,
author = {Russ B. Altman},
title = {Editorial: Annual progress in bioinformatics},
journal = {Briefings Bioinform.},
volume = {6},
number = {1},
pages = {4--5},
year = {2005},
url = {https://doi.org/10.1093/bib/6.1.4},
doi = {10.1093/BIB/6.1.4},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Altman05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RubinTKA05,
author = {Daniel L. Rubin and
Caroline F. Thorn and
Teri E. Klein and
Russ B. Altman},
title = {Application of Information Technology: {A} Statistical Approach to
Scanning the Biomedical Literature for Pharmacogenetics Knowledge},
journal = {J. Am. Medical Informatics Assoc.},
volume = {12},
number = {2},
pages = {121--129},
year = {2005},
url = {https://doi.org/10.1197/jamia.M1640},
doi = {10.1197/JAMIA.M1640},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RubinTKA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PelegRA05,
author = {Mor Peleg and
Daniel L. Rubin and
Russ B. Altman},
title = {Research Paper: Using Petri Net Tools to Study Properties and Dynamics
of Biological Systems},
journal = {J. Am. Medical Informatics Assoc.},
volume = {12},
number = {2},
pages = {181--199},
year = {2005},
url = {https://doi.org/10.1197/jamia.M1637},
doi = {10.1197/JAMIA.M1637},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PelegRA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WrenCPAGA05,
author = {Jonathan D. Wren and
Jeffrey T. Chang and
James Pustejovsky and
Eytan Adar and
Harold R. Garner and
Russ B. Altman},
title = {Biomedical term mapping databases},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {289--293},
year = {2005},
url = {https://doi.org/10.1093/nar/gki137},
doi = {10.1093/NAR/GKI137},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WrenCPAGA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/CannataMA05,
author = {Nicola Cannata and
Emanuela Merelli and
Russ B. Altman},
title = {Time to Organize the Bioinformatics Resourceome},
journal = {PLoS Comput. Biol.},
volume = {1},
number = {7},
year = {2005},
url = {https://doi.org/10.1371/journal.pcbi.0010076},
doi = {10.1371/JOURNAL.PCBI.0010076},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/CannataMA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/Altman05,
author = {Russ B. Altman},
title = {Challenges in Creating an Infrastructure for Physics-Based Simulation
of Biological Structures},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference, {CSB} 2005, Stanford, CA, USA, August 8-11,
2005},
pages = {3},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSB.2005.21},
doi = {10.1109/CSB.2005.21},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/Altman05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/PhuongLA05,
author = {Tu Minh Phuong and
Zhen Lin and
Russ B. Altman},
title = {Choosing SNPs Using Feature Selection},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference, {CSB} 2005, Stanford, CA, USA, August 8-11,
2005},
pages = {301--309},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSB.2005.22},
doi = {10.1109/CSB.2005.22},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/PhuongLA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AltmanDHK05,
author = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
editor = {Russ B. Altman and
Tiffany A. Jung and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Preface},
booktitle = {Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA,
4-8 January 2005},
publisher = {World Scientific},
year = {2005},
url = {http://psb.stanford.edu/psb-online/proceedings/psb05/preface.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AltmanDHK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2005,
editor = {Russ B. Altman and
Tiffany A. Jung and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA,
4-8 January 2005},
publisher = {World Scientific},
year = {2005},
url = {http://psb.stanford.edu/psb-online/proceedings/psb05/},
isbn = {981-256-046-7},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2005.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman04,
author = {Russ B. Altman},
title = {Editorial: Building successful biological databases},
journal = {Briefings Bioinform.},
volume = {5},
number = {1},
pages = {4},
year = {2004},
url = {https://doi.org/10.1093/bib/5.1.4},
doi = {10.1093/BIB/5.1.4},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Altman04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangSA04,
author = {Jeffrey T. Chang and
Hinrich Sch{\"{u}}tze and
Russ B. Altman},
title = {{GAPSCORE:} finding gene and protein names one word at a time},
journal = {Bioinform.},
volume = {20},
number = {2},
pages = {216--225},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/btg393},
doi = {10.1093/BIOINFORMATICS/BTG393},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangSA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OliverBSAH04,
author = {Diane E. Oliver and
Gaurav Bhalotia and
Ariel S. Schwartz and
Russ B. Altman and
Marti A. Hearst},
title = {Tools for loading {MEDLINE} into a local relational database},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {146},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-146},
doi = {10.1186/1471-2105-5-146},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OliverBSAH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/FriedmanAKMMOSSSTW04,
author = {Charles P. Friedman and
Russ B. Altman and
Isaac S. Kohane and
Kathleen A. McCormick and
Perry L. Miller and
Judy G. Ozbolt and
Edward H. Shortliffe and
Gary D. Stormo and
M. Cleat Szczepaniak and
David Tuck and
Jeffrey J. Williamson},
title = {White Paper: Training the Next Generation of Informaticians: The Impact
of "BISTI" and Bioinformatics - {A} Report from the American
College of Medical Informatics},
journal = {J. Am. Medical Informatics Assoc.},
volume = {11},
number = {3},
pages = {167--172},
year = {2004},
url = {https://doi.org/10.1197/jamia.M1520},
doi = {10.1197/JAMIA.M1520},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/FriedmanAKMMOSSSTW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/LiangTLBA04,
author = {Mike P. Liang and
Olga G. Troyanskaya and
Alain Laederach and
Douglas L. Brutlag and
Russ B. Altman},
title = {Computational functional genomics},
journal = {{IEEE} Signal Process. Mag.},
volume = {21},
number = {6},
pages = {62--69},
year = {2004},
url = {https://doi.org/10.1109/MSP.2004.1359143},
doi = {10.1109/MSP.2004.1359143},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/spm/LiangTLBA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/PelegTMA04,
author = {Mor Peleg and
Samson W. Tu and
Abhijit Manindroo and
Russ B. Altman},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {Modeling and Analyzing Biomedical Processes using Workflow/Petri Net
Models and Tools},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {74--78},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-74},
doi = {10.3233/978-1-60750-949-3-74},
timestamp = {Wed, 17 Aug 2022 16:35:51 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/PelegTMA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/RubinCWCKA04,
author = {Daniel L. Rubin and
Michelle Whirl Carrillo and
Mark Woon and
John Conroy and
Teri E. Klein and
Russ B. Altman},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {A Resource to Acquire and Summarize Pharmacogenetics Knowledge in
the Literature},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {793--797},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-793},
doi = {10.3233/978-1-60750-949-3-793},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/RubinCWCKA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AltmanDHK04,
author = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Preface},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/preface.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AltmanDHK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2004,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/},
isbn = {981-238-598-3},
timestamp = {Fri, 05 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2004.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YehKNA03,
author = {Iwei Yeh and
Peter D. Karp and
Natalya Fridman Noy and
Russ B. Altman},
title = {Knowledge acquisition, consistency checking and concurrency control
for Gene Ontology {(GO)}},
journal = {Bioinform.},
volume = {19},
number = {2},
pages = {241--248},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/19.2.241},
doi = {10.1093/BIOINFORMATICS/19.2.241},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YehKNA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaychaudhuriA03,
author = {Soumya Raychaudhuri and
Russ B. Altman},
title = {A literature-based method for assessing the functional coherence of
a gene group},
journal = {Bioinform.},
volume = {19},
number = {3},
pages = {396--401},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg002},
doi = {10.1093/BIOINFORMATICS/BTG002},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaychaudhuriA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MooneyA03,
author = {Sean D. Mooney and
Russ B. Altman},
title = {MutDB: annotating human variation with functionally relevant data},
journal = {Bioinform.},
volume = {19},
number = {14},
pages = {1858--1860},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg241},
doi = {10.1093/BIOINFORMATICS/BTG241},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MooneyA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/WeiA03,
author = {Liping Wei and
Russ B. Altman},
title = {Recognizing Complex, Asymmetric Functional Sites in Protein Structures
Using a Bayesian Scoring Function},
journal = {J. Bioinform. Comput. Biol.},
volume = {1},
number = {1},
pages = {119--138},
year = {2003},
url = {https://doi.org/10.1142/S0219720003000150},
doi = {10.1142/S0219720003000150},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/WeiA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/RaychaudhuriSA03,
author = {Soumya Raychaudhuri and
Hinrich Sch{\"{u}}tze and
Russ B. Altman},
title = {Inclusion of Textual Documentation in the Analysis of Multidimensional
Data Sets: Application to Gene Expression Data},
journal = {Mach. Learn.},
volume = {52},
number = {1-2},
pages = {119--145},
year = {2003},
url = {https://doi.org/10.1023/A:1023901610396},
doi = {10.1023/A:1023901610396},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/RaychaudhuriSA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiangBKBA03,
author = {Mike P. Liang and
D. Rey Banatao and
Teri E. Klein and
Douglas L. Brutlag and
Russ B. Altman},
title = {WebFEATURE: an interactive web tool for identifying and visualizing
functional sites on macromolecular structures},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3324--3327},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg553},
doi = {10.1093/NAR/GKG553},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiangBKBA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/omics/Altman03,
author = {Russ B. Altman},
title = {Complexities of Managing Biomedical Information},
journal = {{OMICS}},
volume = {7},
number = {1},
pages = {127--130},
year = {2003},
url = {https://doi.org/10.1089/153623103322006788},
doi = {10.1089/153623103322006788},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/omics/Altman03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LiuLWKA03,
author = {Shuo Liu and
Steve Lin and
Mark Woon and
Teri E. Klein and
Russ B. Altman},
title = {A Personalized and Automated dbSNP Surveillance System},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {132--136},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227312},
doi = {10.1109/CSB.2003.1227312},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LiuLWKA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LiangBA03,
author = {Mike P. Liang and
Douglas L. Brutlag and
Russ B. Altman},
title = {Automatic Construction of 3D Structural Motifs for Protein Function
Prediction},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {613--614},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227423},
doi = {10.1109/CSB.2003.1227423},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LiangBA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AltmanDHK03,
author = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Preface},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/preface.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AltmanDHK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LiangBA03,
author = {Mike P. Liang and
Douglas L. Brutlag and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Automated Construction of Structural Motifs for Predicting Functional
Sites on Protein Structures},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
pages = {204--215},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/liang.doc},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/LiangBA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AltmanDHK03a,
author = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Special Paper - Introduction},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
pages = {636--637},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/cash-intro.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AltmanDHK03a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/OsborneCSSWCMRA03,
author = {Miles Osborne and
Mark Cuminskey and
Gail Sinclair and
Matthew Smillie and
Bonnie L. Webber and
Jeffrey T. Chang and
Nipun Mehra and
Veronica Rotemberg and
Russ B. Altman},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Edinburgh-Stanford {TREC-2003} Genomics Track},
booktitle = {Proceedings of The Twelfth Text REtrieval Conference, {TREC} 2003,
Gaithersburg, Maryland, USA, November 18-21, 2003},
series = {{NIST} Special Publication},
volume = {500-255},
pages = {622--630},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2003},
url = {http://trec.nist.gov/pubs/trec12/papers/uedinburgh.genomics.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/OsborneCSSWCMRA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2003,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb2003/},
timestamp = {Mon, 22 Jun 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2003.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PelegYA02,
author = {Mor Peleg and
Iwei Yeh and
Russ B. Altman},
title = {Modelling biological processes using workflow and Petri Net models},
journal = {Bioinform.},
volume = {18},
number = {6},
pages = {825--837},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.6.825},
doi = {10.1093/BIOINFORMATICS/18.6.825},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PelegYA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TroyanskayaGBBA02,
author = {Olga G. Troyanskaya and
Mitchell E. Garber and
Patrick O. Brown and
David Botstein and
Russ B. Altman},
title = {Nonparametric methods for identifying differentially expressed genes
in microarray data},
journal = {Bioinform.},
volume = {18},
number = {11},
pages = {1454--1461},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.11.1454},
doi = {10.1093/BIOINFORMATICS/18.11.1454},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TroyanskayaGBBA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/HanAKMP02,
author = {Jiawei Han and
Russ B. Altman and
Vipin Kumar and
Heikki Mannila and
Daryl Pregibon},
title = {Emerging scientific applications in data mining},
journal = {Commun. {ACM}},
volume = {45},
number = {8},
pages = {54--58},
year = {2002},
url = {https://doi.org/10.1145/545151.545179},
doi = {10.1145/545151.545179},
timestamp = {Fri, 29 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cacm/HanAKMP02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChangSA02,
author = {Jeffrey T. Chang and
Hinrich Sch{\"{u}}tze and
Russ B. Altman},
title = {Research Paper: Creating an Online Dictionary of Abbreviations from
{MEDLINE}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {9},
number = {6},
pages = {612--620},
year = {2002},
url = {https://doi.org/10.1197/jamia.M1139},
doi = {10.1197/JAMIA.M1139},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ChangSA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HewettORESAK03,
author = {Micheal Hewett and
Diane E. Oliver and
Daniel L. Rubin and
Katrina L. Easton and
Joshua M. Stuart and
Russ B. Altman and
Teri E. Klein},
title = {PharmGKB: the Pharmacogenetics Knowledge Base},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {163--165},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.163},
doi = {10.1093/NAR/30.1.163},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HewettORESAK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/PelegGA02,
author = {Mor Peleg and
Irene S. Gabashvili and
Russ B. Altman},
title = {Qualitative models of molecular function: linking genetic polymorphisms
of tRNA to their functional sequelae},
journal = {Proc. {IEEE}},
volume = {90},
number = {12},
pages = {1875--1886},
year = {2002},
url = {https://doi.org/10.1109/JPROC.2002.805304},
doi = {10.1109/JPROC.2002.805304},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pieee/PelegGA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LinHA02,
author = {Zhen Lin and
Micheal Hewett and
Russ B. Altman},
title = {Using binning to maintain confidentiality of medical data},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-091-1.612976/a-092-1.612973},
timestamp = {Wed, 17 Apr 2024 11:48:33 +0200},
biburl = {https://dblp.org/rec/conf/amia/LinHA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RubinSOHA02,
author = {Daniel L. Rubin and
Farhad Shafa and
Diane E. Oliver and
Micheal Hewett and
Russ B. Altman},
title = {Representing genetic sequence data for pharmacogenomics: an evolutionary
approach using ontological and relational models},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {207--215},
year = {2002},
timestamp = {Wed, 29 Jun 2011 14:55:41 +0200},
biburl = {https://dblp.org/rec/conf/ismb/RubinSOHA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AltmanDHK02,
author = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Preface},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/preface.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AltmanDHK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/OliverRSHKA02,
author = {Diane E. Oliver and
Daniel L. Rubin and
Joshua M. Stuart and
Micheal Hewett and
Teri E. Klein and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Ontology Development for a Pharmacogenetics Knowledge Base},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {65--76},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/oliver.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/OliverRSHKA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/RubinHOKA02,
author = {Daniel L. Rubin and
Micheal Hewett and
Diane E. Oliver and
Teri E. Klein and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Automating Data Acquisition into Ontologies from Pharmacogenetics
Relational Data Sources Using Declarative Object Definitions and {XML}},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {88--99},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/rubin.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/RubinHOKA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2002,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb2002/},
timestamp = {Mon, 22 Jun 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2002.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TroyanskayaCSBHTBA01,
author = {Olga G. Troyanskaya and
Michael N. Cantor and
Gavin Sherlock and
Patrick O. Brown and
Trevor Hastie and
Robert Tibshirani and
David Botstein and
Russ B. Altman},
title = {Missing value estimation methods for {DNA} microarrays},
journal = {Bioinform.},
volume = {17},
number = {6},
pages = {520--525},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.6.520},
doi = {10.1093/BIOINFORMATICS/17.6.520},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TroyanskayaCSBHTBA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/AltmanVMR01,
author = {Russ B. Altman and
Alfonso Valencia and
Satoru Miyano and
Shoba Ranganathan},
title = {Challenges for Intelligent Systems in Biology},
journal = {{IEEE} Intell. Syst.},
volume = {16},
number = {6},
pages = {14--20},
year = {2001},
url = {https://doi.org/10.1109/5254.972065},
doi = {10.1109/5254.972065},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/AltmanVMR01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WilliamsDA01,
author = {Glenn A. Williams and
Jonathan M. Dugan and
Russ B. Altman},
title = {Constrained Global Optimization for Estimating Molecular Structure
from Atomic Distances},
journal = {J. Comput. Biol.},
volume = {8},
number = {5},
pages = {523--547},
year = {2001},
url = {https://doi.org/10.1089/106652701753216521},
doi = {10.1089/106652701753216521},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WilliamsDA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/Altman01,
author = {Russ B. Altman},
editor = {Doheon Lee and
Mario Schkolnick and
Foster J. Provost and
Ramakrishnan Srikant},
title = {Challenges for knowledge discovery in biology},
booktitle = {Proceedings of the seventh {ACM} {SIGKDD} international conference
on Knowledge discovery and data mining, San Francisco, CA, USA, August
26-29, 2001},
pages = {2},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/502512.502513},
doi = {10.1145/502512.502513},
timestamp = {Tue, 01 Jun 2021 15:21:34 +0200},
biburl = {https://dblp.org/rec/conf/kdd/Altman01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BanataoHBAK01,
author = {D. Rey Banatao and
Conrad C. Huang and
Patricia C. Babbitt and
Russ B. Altman and
Teri E. Klein},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {ViewFeature: Integrated Feature Analysis and Visualization},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {240--250},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/banatao.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BanataoHBAK01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/WaughWWA01,
author = {Allison Waugh and
Glenn A. Williams and
Liping Wei and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological
Databases},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {360--371},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/waugh.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/WaughWWA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ChangRA01,
author = {Jeffrey T. Chang and
Soumya Raychaudhuri and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Including Biological Literature Improves Homology Search},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {374--383},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/chang.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ChangRA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2001,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb2001/},
timestamp = {Mon, 22 Jun 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/2001.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/Altman00,
author = {Russ B. Altman},
title = {Viewpoint: The Interactions Between Clinical Informatics and Bioinformatics:
{A} Case Study},
journal = {J. Am. Medical Informatics Assoc.},
volume = {7},
number = {5},
pages = {439--443},
year = {2000},
url = {https://doi.org/10.1136/jamia.2000.0070439},
doi = {10.1136/JAMIA.2000.0070439},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/Altman00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KohaneA00,
author = {Isaac S. Kohane and
Russ B. Altman},
title = {The new peer review},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-087-1.609716/a-088-1.609713},
timestamp = {Wed, 17 Apr 2024 11:48:44 +0200},
biburl = {https://dblp.org/rec/conf/amia/KohaneA00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RaychaudhuriSLSA00,
author = {Soumya Raychaudhuri and
Joshua M. Stuart and
Xuemin Liu and
Peter M. Small and
Russ B. Altman},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Pattern Recognition of Genomic Features with Microarrays: Site Typing
of Mycobacterium Tuberculosis Strains},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {286--295},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-030.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/RaychaudhuriSLSA00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/2000,
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
publisher = {{AAAI}},
year = {2000},
isbn = {1-57735-115-0},
timestamp = {Fri, 04 May 2007 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/2000.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/Altman99,
author = {Russ B. Altman},
title = {{AI} in Medicine: The Spectrum of Challenges from Managed Care to
Molecular Medicine},
journal = {{AI} Mag.},
volume = {20},
number = {3},
pages = {67--77},
year = {1999},
url = {https://doi.org/10.1609/aimag.v20i3.1467},
doi = {10.1609/AIMAG.V20I3.1467},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aim/Altman99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSA99,
author = {Cheng Che Chen and
Jaswinder Pal Singh and
Russ B. Altman},
title = {Using imperfect secondary structure predictions to improve molecular
structure computations},
journal = {Bioinform.},
volume = {15},
number = {1},
pages = {53--65},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.1.53},
doi = {10.1093/BIOINFORMATICS/15.1.53},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/AbernethyWHA99,
author = {Neil F. Abernethy and
Julie J. Wu and
Micheal Hewett and
Russ B. Altman},
title = {Sophia: a flexible, Web-based knowledge server},
journal = {{IEEE} Intell. Syst.},
volume = {14},
number = {4},
pages = {79--85},
year = {1999},
url = {https://doi.org/10.1109/5254.784088},
doi = {10.1109/5254.784088},
timestamp = {Wed, 12 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/expert/AbernethyWHA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/AltmanBCCCA99,
author = {Russ B. Altman and
Michael Bada and
Xiaoqian J. Chai and
Michelle Whirl Carrillo and
Richard O. Chen and
Neil F. Abernethy},
title = {RiboWeb: An Ontology-Based System for Collaborative Molecular Biology},
journal = {{IEEE} Intell. Syst.},
volume = {14},
number = {5},
pages = {68--76},
year = {1999},
url = {https://doi.org/10.1109/5254.796092},
doi = {10.1109/5254.796092},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/AltmanBCCCA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChenA99,
author = {Richard O. Chen and
Russ B. Altman},
title = {Model Formulation: Automated Diagnosis of Data-Model Conflicts Using
Metadata},
journal = {J. Am. Medical Informatics Assoc.},
volume = {6},
number = {5},
pages = {374--392},
year = {1999},
url = {https://doi.org/10.1136/jamia.1999.0060374},
doi = {10.1136/JAMIA.1999.0060374},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ChenA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppsc/ChenSA99,
author = {Cheng Che Chen and
Jaswinder Pal Singh and
Russ B. Altman},
title = {Biomolecular Structure Estimation: {A} Case Study of Irregular Hierarchical
Parallelism},
booktitle = {Proceedings of the Ninth {SIAM} Conference on Parallel Processing
for Scientific Computing, {PPSC} 1999, San Antonio, Texas, USA, March
22-24, 1999},
publisher = {{SIAM}},
year = {1999},
timestamp = {Mon, 20 Mar 2017 14:21:45 +0100},
biburl = {https://dblp.org/rec/conf/ppsc/ChenSA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/1999,
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Proceedings of the 4th Pacific Symposium on Biocomputing, {PSB} 1999,
The Orchid at Mauna Lani, Big Island of Hawaii, USA, January 4-9,
1999},
year = {1999},
url = {http://psb.stanford.edu/psb-online/proceedings/psb1999/},
timestamp = {Mon, 22 Jun 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/1999.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Altman98,
author = {Russ B. Altman},
title = {A curriculum for bioinformatics: the time is ripe},
journal = {Bioinform.},
volume = {14},
number = {7},
pages = {549--550},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.7.549},
doi = {10.1093/BIOINFORMATICS/14.7.549},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Altman98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmms/GennariCAM98,
author = {John H. Gennari and
Heyning Cheng and
Russ B. Altman and
Mark A. Musen},
title = {Reuse, CORBA, and knowledge-based systems},
journal = {Int. J. Hum. Comput. Stud.},
volume = {49},
number = {4},
pages = {523--546},
year = {1998},
url = {https://doi.org/10.1006/ijhc.1998.0217},
doi = {10.1006/IJHC.1998.0217},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmms/GennariCAM98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenSA98,
author = {Cheng Che Chen and
Jaswinder Pal Singh and
Russ B. Altman},
title = {Hierarchical Organization of Molecular Structure Computations},
journal = {J. Comput. Biol.},
volume = {5},
number = {3},
pages = {409--422},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.409},
doi = {10.1089/CMB.1998.5.409},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenSA98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Altman98,
author = {Russ B. Altman},
title = {Bioinformatics in support of molecular medicine},
booktitle = {{AMIA} 1998, American Medical Informatics Association Annual Symposium,
Lake Buena Vista, FL, USA, November 7-11, 1998},
publisher = {{AMIA}},
year = {1998},
url = {https://knowledge.amia.org/amia-55142-a1998a-1.588514/t-001-1.590475/f-001-1.590476/a-007-1.591014/a-008-1.591011},
timestamp = {Wed, 17 Apr 2024 11:48:54 +0200},
biburl = {https://dblp.org/rec/conf/amia/Altman98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HonABCA98,
author = {Lawrence S. Hon and
Neil F. Abernethy and
Vladimir Brusic and
Jenny Chai and
Russ B. Altman},
title = {MHCWeb: converting a {WWW} database into a knowledge-based collaborative
environment},
booktitle = {{AMIA} 1998, American Medical Informatics Association Annual Symposium,
Lake Buena Vista, FL, USA, November 7-11, 1998},
publisher = {{AMIA}},
year = {1998},
url = {https://knowledge.amia.org/amia-55142-a1998a-1.588514/t-001-1.590475/f-001-1.590476/a-183-1.590486/a-184-1.590483},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HonABCA98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuA98,
author = {Xuemin Liu and
Russ B. Altman},
title = {Updating a bibliography using the related articles function within
PubMed},
booktitle = {{AMIA} 1998, American Medical Informatics Association Annual Symposium,
Lake Buena Vista, FL, USA, November 7-11, 1998},
publisher = {{AMIA}},
year = {1998},
url = {https://knowledge.amia.org/amia-55142-a1998a-1.588514/t-001-1.590475/f-001-1.590476/a-144-1.590603/a-145-1.590600},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuA98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/chi/FelcianoA98,
author = {Ramon M. Felciano and
Russ B. Altman},
editor = {Clare{-}Marie Karat and
Arnold M. Lund},
title = {Graphical style sheets: towards reusable representations of biomedical
graphics},
booktitle = {{CHI} 98 Conference Summary on Human Factors in Computing Systems,
{CHI} '98, Los Angeles, California, {USA}},
pages = {48--49},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/286498.286523},
doi = {10.1145/286498.286523},
timestamp = {Fri, 12 Mar 2021 15:27:48 +0100},
biburl = {https://dblp.org/rec/conf/chi/FelcianoA98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SchmidtCCA98,
author = {Jeanette P. Schmidt and
Cheng Che Chen and
Jonathan L. Cooper and
Russ B. Altman},
editor = {Janice I. Glasgow and
Timothy G. Littlejohn and
Fran{\c{c}}ois Major and
Richard H. Lathrop and
David Sankoff and
Christoph W. Sensen},
title = {A Surface Measure for Probabilistic Structural Computations},
booktitle = {Proceedings of the 6th International Conference on Intelligent Systems
for Molecular Biology (ISMB-98), Montr{\'{e}}al, Qu{\'{e}}bec,
Canada, June 28 - July 1, 1998},
pages = {148--156},
publisher = {{AAAI}},
year = {1998},
url = {http://www.aaai.org/Library/ISMB/1998/ismb98-018.php},
timestamp = {Thu, 27 Jun 2019 11:28:34 +0200},
biburl = {https://dblp.org/rec/conf/ismb/SchmidtCCA98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/krdb/AbernethyA98,
author = {Neil F. Abernethy and
Russ B. Altman},
editor = {Alexander Borgida and
Vinay K. Chaudhri and
Martin Staudt},
title = {Sophia: Providing Basic Knowledge Services with a Common {DBMS}},
booktitle = {Proceedings of the 5th International Workshop on Knowledge Represenation
Meets Databases {(KRDB} '98): Innovative Application Programming and
Query Interfaces, Seattle, Washington, USA, May 31, 1998},
series = {{CEUR} Workshop Proceedings},
volume = {10},
pages = {1.1--1.6},
publisher = {CEUR-WS.org},
year = {1998},
url = {https://ceur-ws.org/Vol-10/paper1.ps},
timestamp = {Fri, 10 Mar 2023 16:23:33 +0100},
biburl = {https://dblp.org/rec/conf/krdb/AbernethyA98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenSA98,
author = {Cheng Che Chen and
Jaswinder Pal Singh and
Russ B. Altman},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {The hierarchical organization of molecular structure computations},
booktitle = {Proceedings of the Second Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
March 22-25, 1998},
pages = {51--59},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/279069.279086},
doi = {10.1145/279069.279086},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChenSA98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/AltmanAC97,
author = {Russ B. Altman and
Neil F. Abernethy and
Richard O. Chen},
editor = {Terry Gaasterland and
Peter D. Karp and
Kevin Karplus and
Christos A. Ouzounis and
Chris Sander and
Alfonso Valencia},
title = {Standardized Representations of the Literature: Combining Diverse
Sources of Ribosomal Data},
booktitle = {Proceedings of the 5th International Conference on Intelligent Systems
for Molecular Biology, Halkidiki, Greece, June 21-26, 1997},
pages = {15--24},
publisher = {{AAAI}},
year = {1997},
url = {http://www.aaai.org/Library/ISMB/1997/ismb97-002.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/AltmanAC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ChenFA97,
author = {Richard O. Chen and
Ramon M. Felciano and
Russ B. Altman},
editor = {Terry Gaasterland and
Peter D. Karp and
Kevin Karplus and
Christos A. Ouzounis and
Chris Sander and
Alfonso Valencia},
title = {{RIBOWEB:} Linking Structural Computations to a Knowledge Base of
Published Experimental Data},
booktitle = {Proceedings of the 5th International Conference on Intelligent Systems
for Molecular Biology, Halkidiki, Greece, June 21-26, 1997},
pages = {84--87},
publisher = {{AAAI}},
year = {1997},
url = {http://www.aaai.org/Library/ISMB/1997/ismb97-011.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/ChenFA97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCA96,
author = {Cheng Che Chen and
Richard O. Chen and
Russ B. Altman},
title = {Constraining volume by matching the moments of a distance distribution},
journal = {Comput. Appl. Biosci.},
volume = {12},
number = {4},
pages = {319--326},
year = {1996},
url = {https://doi.org/10.1093/bioinformatics/12.4.319},
doi = {10.1093/BIOINFORMATICS/12.4.319},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCA96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ChenSA96,
author = {Cheng Che Chen and
Jaswinder Pal Singh and
Russ B. Altman},
title = {Parallel Hierarchical Molecular Structure Estimation},
booktitle = {Proceedings of the 1996 {ACM/IEEE} Conference on Supercomputing, November
17-22, 1996, Pittsburgh, PA, {USA}},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.ieeecomputersociety.org/10.1109/SC.1996.30},
doi = {10.1109/SC.1996.30},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/ChenSA96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GersteinA95,
author = {Mark Gerstein and
Russ B. Altman},
title = {Using a measure of structural variation to define a core for the globins},
journal = {Comput. Appl. Biosci.},
volume = {11},
number = {6},
pages = {633--644},
year = {1995},
url = {https://doi.org/10.1093/bioinformatics/11.6.633},
doi = {10.1093/BIOINFORMATICS/11.6.633},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GersteinA95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmms/Altman95,
author = {Russ B. Altman},
title = {A probabilistic approach to determining biological structure: integrating
uncertain data sources},
journal = {Int. J. Hum. Comput. Stud.},
volume = {42},
number = {6},
pages = {593--616},
year = {1995},
url = {https://doi.org/10.1006/ijhc.1995.1026},
doi = {10.1006/IJHC.1995.1026},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmms/Altman95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BagleyWCA95,
author = {Steven C. Bagley and
Liping Wei and
Carol Cheng and
Russ B. Altman},
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {Characterizing Oriented Protein Structural Sites Using Biochemical
Properties},
booktitle = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
pages = {12--20},
publisher = {{AAAI}},
year = {1995},
url = {http://www.aaai.org/Library/ISMB/1995/ismb95-002.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BagleyWCA95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ssr/GennariAM95,
author = {John H. Gennari and
Russ B. Altman and
Mark A. Musen},
editor = {Mansur H. Samadzadeh and
Mansour Kazerooni{-}Zand},
title = {Reuse with PROT{\'{E}}g{\'{E}}-II: From Elevators to Ribosomes},
booktitle = {Proceedings of the {ACM} {SIGSOFT} Symposium on Software Reusability,
SSR@ICSE 1995, April 23-30, 1995, Seattle, WA, {USA}},
pages = {72--80},
publisher = {{ACM}},
year = {1995},
timestamp = {Thu, 03 Feb 2022 13:12:45 +0100},
biburl = {https://dblp.org/rec/conf/ssr/GennariAM95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/1995,
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
publisher = {{AAAI}},
year = {1995},
isbn = {0-929280-83-0},
timestamp = {Fri, 27 Jun 2003 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/1995.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/AltmanWN94,
author = {Russ B. Altman and
Bryn Weiser and
Harry F. Noller},
editor = {Russ B. Altman and
Douglas L. Brutlag and
Peter D. Karp and
Richard H. Lathrop and
David B. Searls},
title = {Constraint Satisfaction Techniques for Modeling Large Complexes: Application
to the Central Domain of 16S Ribosomal {RNA}},
booktitle = {Proceedings of the Second International Conference on Intelligent
Systems for Molecular Biology, August 14-17, 1994, Stanford University,
Stanford, California, {USA}},
pages = {10--18},
publisher = {{AAAI}},
year = {1994},
url = {http://www.aaai.org/Library/ISMB/1994/ismb94-002.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/AltmanWN94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/AltmanG94,
author = {Russ B. Altman and
Mark Gerstein},
editor = {Russ B. Altman and
Douglas L. Brutlag and
Peter D. Karp and
Richard H. Lathrop and
David B. Searls},
title = {Finding an Average Core Structure: Application to the Globins},
booktitle = {Proceedings of the Second International Conference on Intelligent
Systems for Molecular Biology, August 14-17, 1994, Stanford University,
Stanford, California, {USA}},
pages = {19--27},
publisher = {{AAAI}},
year = {1994},
url = {http://www.aaai.org/Library/ISMB/1994/ismb94-003.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/AltmanG94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ChenSPA94,
author = {Cheng Che Chen and
Jaswinder Pal Singh and
William B. Poland and
Russ B. Altman},
editor = {Gary M. Johnson},
title = {Parallel protein structure determination from uncertain data},
booktitle = {Proceedings Supercomputing '94, Washington, DC, USA, November 14-18,
1994},
pages = {570--579},
publisher = {{IEEE} Computer Society},
year = {1994},
url = {https://doi.org/10.1109/SUPERC.1994.344321},
doi = {10.1109/SUPERC.1994.344321},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/ChenSPA94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/AltmanCPS94,
author = {Russ B. Altman and
Cheng Che Chen and
William B. Poland and
Jaswinder Pal Singh},
editor = {Ram{\'{o}}n L{\'{o}}pez de M{\'{a}}ntaras and
David Poole},
title = {Probabilistic Constraint Satisfaction with Non-Gaussian Noise},
booktitle = {{UAI} '94: Proceedings of the Tenth Annual Conference on Uncertainty
in Artificial Intelligence, Seattle, Washington, USA, July 29-31,
1994},
pages = {15--22},
publisher = {Morgan Kaufmann},
year = {1994},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=482\&\#38;proceeding\_id=10},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/AltmanCPS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/1994,
editor = {Russ B. Altman and
Douglas L. Brutlag and
Peter D. Karp and
Richard H. Lathrop and
David B. Searls},
title = {Proceedings of the Second International Conference on Intelligent
Systems for Molecular Biology, August 14-17, 1994, Stanford University,
Stanford, California, {USA}},
publisher = {{AAAI}},
year = {1994},
isbn = {0-929280-68-7},
timestamp = {Tue, 01 Jul 2003 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/1994.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Altman93,
author = {Russ B. Altman},
editor = {Lawrence Hunter and
David B. Searls and
Jude W. Shavlik},
title = {Probabilistic Structure Calculations: {A} Three-Dimensional tRNA Structure
from Sequence Correlation Data},
booktitle = {Proceedings of the 1st International Conference on Intelligent Systems
for Molecular Biology, Bethesda, MD, USA, July 1993},
pages = {12--20},
publisher = {{AAAI}},
year = {1993},
url = {http://www.aaai.org/Library/ISMB/1993/ismb93-002.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/Altman93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/Altman93,
author = {Russ B. Altman},
editor = {David Heckerman and
E. H. Mamdani},
title = {A Probabilistic Algorithm for Calculating Structure: Borrowing from
Simulated Annealing},
booktitle = {{UAI} '93: Proceedings of the Ninth Annual Conference on Uncertainty
in Artificial Intelligence, The Catholic University of America, Providence,
Washington, DC, USA, July 9-11, 1993},
pages = {23--31},
publisher = {Morgan Kaufmann},
year = {1993},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=559\&\#38;proceeding\_id=9},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/Altman93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BrinkleyADBJ88,
author = {James F. Brinkley and
Russ B. Altman and
Bruce S. Duncan and
Bruce G. Buchanan and
Oleg Jardetzky},
title = {Heuristic refinement method for the derivation of protein solution
structures: validation on cytochrome b562},
journal = {J. Chem. Inf. Comput. Sci.},
volume = {28},
number = {4},
pages = {194--210},
year = {1988},
url = {https://doi.org/10.1021/ci00060a005},
doi = {10.1021/CI00060A005},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/BrinkleyADBJ88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/AltmanB87,
author = {Russ B. Altman and
Bruce G. Buchanan},
editor = {Kenneth D. Forbus and
Howard E. Shrobe},
title = {Partial Compilation of Strategic Knowledge},
booktitle = {Proceedings of the 6th National Conference on Artificial Intelligence.
Seattle, WA, USA, July 1987},
pages = {399--404},
publisher = {Morgan Kaufmann},
year = {1987},
url = {http://www.aaai.org/Library/AAAI/1987/aaai87-071.php},
timestamp = {Mon, 04 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/AltmanB87.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Hayes-RothBLHABCDJ86,
author = {Barbara Hayes{-}Roth and
Bruce G. Buchanan and
Olivier Lichtarge and
Mike Hewitt and
Russ B. Altman and
James F. Brinkley and
Craig Cornelius and
Bruce S. Duncan and
Oleg Jardetzky},
editor = {Tom Kehler and
Stanley J. Rosenschein},
title = {{PROTEAN:} Deriving Protein Structure from Constraints},
booktitle = {Proceedings of the 5th National Conference on Artificial Intelligence.
Philadelphia, PA, USA, August 11-15, 1986. Volume 2: Engineering},
pages = {904--909},
publisher = {Morgan Kaufmann},
year = {1986},
url = {http://www.aaai.org/Library/AAAI/1986/aaai86-150.php},
timestamp = {Mon, 04 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/Hayes-RothBLHABCDJ86.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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