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ORCIDBibTeX records: Brian D. Athey
@article{DBLP:journals/biomedsem/HeYHLNBZPWLOWHT22,
author = {Yongqun He and
Hong Yu and
Anthony Huffman and
Asiyah Yu Lin and
Darren A. Natale and
John Beverley and
Ling Zheng and
Yehoshua Perl and
Zhigang Wang and
Yingtong Liu and
Edison Ong and
Yang Wang and
Philip Huang and
Long Tran and
Jinyang Du and
Zalan Shah and
Easheta Shah and
Roshan Desai and
Hsin{-}Hui Huang and
Yujia Tian and
Eric Merrell and
William D. Duncan and
Sivaram Arabandi and
Lynn M. Schriml and
Jie Zheng and
Anna Maria Masci and
Liwei Wang and
Hongfang Liu and
Fatima Zohra Smaili and
Robert Hoehndorf and
Zo{\"{e}} May Pendlington and
Paola Roncaglia and
Xianwei Ye and
Jiangan Xie and
Yi{-}Wei Tang and
Xiaolin Yang and
Suyuan Peng and
Luxia Zhang and
Luonan Chen and
Junguk Hur and
Gilbert S. Omenn and
Brian D. Athey and
Barry Smith},
title = {A comprehensive update on {CIDO:} the community-based coronavirus
infectious disease ontology},
journal = {J. Biomed. Semant.},
volume = {13},
number = {1},
pages = {25},
year = {2022},
url = {https://doi.org/10.1186/s13326-022-00279-z},
doi = {10.1186/S13326-022-00279-Z},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HeYHLNBZPWLOWHT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/ReamaroonSGAND21,
author = {Narathip Reamaroon and
Michael W. Sjoding and
Jonathan Gryak and
Brian D. Athey and
Kayvan Najarian and
Harm Derksen},
title = {Automated detection of acute respiratory distress syndrome from chest
X-Rays using Directionality Measure and deep learning features},
journal = {Comput. Biol. Medicine},
volume = {134},
pages = {104463},
year = {2021},
url = {https://doi.org/10.1016/j.compbiomed.2021.104463},
doi = {10.1016/J.COMPBIOMED.2021.104463},
timestamp = {Thu, 29 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/ReamaroonSGAND21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcmi/ReamaroonSDSGBA20,
author = {Narathip Reamaroon and
Michael W. Sjoding and
Harm Derksen and
Elyas Sabeti and
Jonathan Gryak and
Ryan P. Barbaro and
Brian D. Athey and
Kayvan Najarian},
title = {Robust segmentation of lung in chest x-ray: applications in analysis
of acute respiratory distress syndrome},
journal = {{BMC} Medical Imaging},
volume = {20},
number = {1},
pages = {116},
year = {2020},
url = {https://doi.org/10.1186/s12880-020-00514-y},
doi = {10.1186/S12880-020-00514-Y},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcmi/ReamaroonSDSGBA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/He0OWLHHBLDAXHY20,
author = {Yongqun He and
Hong Yu and
Edison Ong and
Yang Wang and
Yingtong Liu and
Anthony Huffman and
Hsin{-}Hui Huang and
John Beverley and
Asiyah Yu Lin and
William D. Duncan and
Sivaram Arabandi and
Jiangan Xie and
Junguk Hur and
Xiaolin Yang and
Luonan Chen and
Gilbert S. Omenn and
Brian D. Athey and
Barry Smith},
editor = {Janna Hastings and
Frank Loebe},
title = {{CIDO:} The Community-Based Coronavirus Infectious Disease Ontology},
booktitle = {Proceedings of the 11th International Conference on Biomedical Ontologies
{(ICBO)} joint with the 10th Workshop on Ontologies and Data in Life
Sciences {(ODLS)} and part of the Bolzano Summer of Knowledge (BoSK
2020), Virtual conference hosted in Bolzano, Italy, September 17,
2020},
series = {{CEUR} Workshop Proceedings},
volume = {2807},
pages = {1--10},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2807/paperE.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/He0OWLHHBLDAXHY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aist/KalininAD18,
author = {Alexandr A. Kalinin and
Brian D. Athey and
Ivo D. Dinov},
editor = {Wil M. P. van der Aalst and
Vladimir Batagelj and
Goran Glavas and
Dmitry I. Ignatov and
Michael Yu. Khachay and
Olessia Koltsova and
Sergei O. Kuznetsov and
Irina A. Lomazova and
Natalia V. Loukachevitch and
Amedeo Napoli and
Alexander Panchenko and
Panos M. Pardalos and
Marcello Pelillo and
Andrey V. Savchenko},
title = {Evaluation of Methods for Cell Nuclear Structure Analysis from Microscopy
Data},
booktitle = {Supplementary Proceedings of the Seventh International Conference
on Analysis of Images, Social Networks and Texts {(AIST} 2018), Moscow,
Russia, July 5 - 7, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2268},
pages = {235--240},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2268/paper27.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:56 +0100},
biburl = {https://dblp.org/rec/conf/aist/KalininAD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/KalininAAFMDWHZ18,
author = {Alexandr A. Kalinin and
Ari Allyn{-}Feuer and
Alexander S. Ade and
Gordon{-}Victor Fon and
Walter Meixner and
David Dilworth and
Jeffrey R. de Wet and
Gerald A. Higgins and
Gen Zheng and
Amy Creekmore and
John W. Wiley and
James E. Verdone and
Robert W. Veltri and
Kenneth J. Pienta and
Donald S. Coffey and
Brian D. Athey and
Ivo D. Dinov},
title = {3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based
Morphometry Classification Results},
booktitle = {2018 {IEEE} Conference on Computer Vision and Pattern Recognition
Workshops, {CVPR} Workshops 2018, Salt Lake City, UT, USA, June 18-22,
2018},
pages = {2272--2280},
publisher = {Computer Vision Foundation / {IEEE} Computer Society},
year = {2018},
url = {http://openaccess.thecvf.com/content\_cvpr\_2018\_workshops/w44/html/Kalinin\_3D\_Cell\_Nuclear\_CVPR\_2018\_paper.html},
doi = {10.1109/CVPRW.2018.00304},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/KalininAAFMDWHZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-08570,
author = {Alexandr A. Kalinin and
Gerald A. Higgins and
Narathip Reamaroon and
S. M. Reza Soroushmehr and
Ari Allyn{-}Feuer and
Ivo D. Dinov and
Kayvan Najarian and
Brian D. Athey},
title = {Deep Learning in Pharmacogenomics: From Gene Regulation to Patient
Stratification},
journal = {CoRR},
volume = {abs/1801.08570},
year = {2018},
url = {http://arxiv.org/abs/1801.08570},
eprinttype = {arXiv},
eprint = {1801.08570},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-08570.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DurenWHOABK14,
author = {William Duren and
Terry E. Weymouth and
Tim Hull and
Gilbert S. Omenn and
Brian D. Athey and
Charles F. Burant and
Alla Karnovsky},
title = {MetDisease - connecting metabolites to diseases via literature},
journal = {Bioinform.},
volume = {30},
number = {15},
pages = {2239--2241},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu179},
doi = {10.1093/BIOINFORMATICS/BTU179},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DurenWHOABK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SarntivijaiLXMDVSPMPLTSMNBHZSPMCSAH14,
author = {Sirarat Sarntivijai and
Yu Lin and
Zuoshuang Xiang and
Terrence F. Meehan and
Alexander D. Diehl and
Uma D. Vempati and
Stephan C. Sch{\"{u}}rer and
Chao Pang and
James Malone and
Helen E. Parkinson and
Yue Liu and
Terue Takatsuki and
Kaoru Saijo and
Hiroshi Masuya and
Yukio Nakamura and
Matthew H. Brush and
Melissa A. Haendel and
Jie Zheng and
Christian J. Stoeckert Jr. and
Bjoern Peters and
Christopher J. Mungall and
Thomas E. Carey and
David J. States and
Brian D. Athey and
Yongqun He},
title = {{CLO:} The cell line ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {37},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-37},
doi = {10.1186/2041-1480-5-37},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SarntivijaiLXMDVSPMPLTSMNBHZSPMCSAH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarnovskyWHTSLSSJBAO12,
author = {Alla Karnovsky and
Terry E. Weymouth and
Tim Hull and
V. Glenn Tarcea and
Giovanni Scardoni and
Carlo Laudanna and
Maureen A. Sartor and
Kathleen A. Stringer and
H. V. Jagadish and
Charles F. Burant and
Brian D. Athey and
Gilbert S. Omenn},
title = {Metscape 2 bioinformatics tool for the analysis and visualization
of metabolomics and gene expression data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {373--380},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr661},
doi = {10.1093/BIOINFORMATICS/BTR661},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarnovskyWHTSLSSJBAO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SartorAWSOAK12,
author = {Maureen A. Sartor and
Alexander S. Ade and
Zach Wright and
David J. States and
Gilbert S. Omenn and
Brian D. Athey and
Alla Karnovsky},
title = {Metab2MeSH: annotating compounds with medical subject headings},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1408--1410},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts156},
doi = {10.1093/BIOINFORMATICS/BTS156},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SartorAWSOAK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/AtheyCJOMKBID12,
author = {Brian D. Athey and
James D. Cavalcoli and
H. V. Jagadish and
Gilbert S. Omenn and
Barbara Mirel and
Matthias Kretzler and
Charles F. Burant and
Raphael D. Isokpehi and
Charles DeLisi},
title = {The {NIH} National Center for Integrative Biomedical Informatics {(NCIBI)}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {2},
pages = {166--170},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000552},
doi = {10.1136/AMIAJNL-2011-000552},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/AtheyCJOMKBID12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MandlAFMR12,
author = {Kenneth D. Mandl and
Brian D. Athey and
Daniel S. Fritsch and
Shawn N. Murphy and
Will Ross},
title = {Building the {SMART} Platforms Ecosystem: Toward an Apps-Based Health
Information Economy},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-186-1.640667/a-187-1.640664},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/MandlAFMR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RasmussenABMM12,
author = {Luke V. Rasmussen and
Brian D. Athey and
Andrew D. Boyd and
Bradley A. Malin and
Shawn N. Murphy},
title = {Rethinking the "Honest Broker" in the Changing Face of Security
and Privacy},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-193-1.640645/a-194-1.640642},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RasmussenABMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SuBBAM11,
author = {Gang Su and
Charles F. Burant and
Christopher W. Beecher and
Brian D. Athey and
Fan Meng},
title = {Integrated metabolome and transcriptome analysis of the {NCI60} dataset},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S36},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S36},
doi = {10.1186/1471-2105-12-S1-S36},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SuBBAM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/TenenbaumWABDGKMMNNRSSWWABGMa11,
author = {Jessica D. Tenenbaum and
Patricia L. Whetzel and
Kent Anderson and
Charles D. Borromeo and
Ivo D. Dinov and
Davera Gabriel and
Beth A. Kirschner and
Barbara Mirel and
Timothy D. Morris and
Natasha Fridman Noy and
Csongor Nyulas and
David Rubenson and
Paul R. Saxman and
Harpreet Singh and
Nancy Whelan and
Zach Wright and
Brian D. Athey and
Michael J. Becich and
Geoffrey S. Ginsburg and
Mark A. Musen and
Kevin A. Smith and
Alice F. Tarantal and
Daniel L. Rubin and
Peter Lyster},
title = {The Biomedical Resource Ontology {(BRO)} to enable resource discovery
in clinical and translational research},
journal = {J. Biomed. Informatics},
volume = {44},
number = {1},
pages = {137--145},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2010.10.003},
doi = {10.1016/J.JBI.2010.10.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/TenenbaumWABDGKMMNNRSSWWABGMa11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/SarntivijaiXMDVSPMPAH11,
author = {Sirarat Sarntivijai and
Zuoshuang Xiang and
Terrence F. Meehan and
Alexander D. Diehl and
Uma Vempati and
Stephan C. Sch{\"{u}}rer and
Chao Pang and
James Malone and
Helen E. Parkinson and
Brian D. Athey and
Yongqun He},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid
Integrative Translational Informatics},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper4.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/SarntivijaiXMDVSPMPAH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BucknerWSAWM10,
author = {Joshua Buckner and
Justin Wilson and
Mark Seligman and
Brian D. Athey and
Stanley J. Watson and
Fan Meng},
title = {The gputools package enables {GPU} computing in {R}},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {134--135},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp608},
doi = {10.1093/BIOINFORMATICS/BTP608},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BucknerWSAWM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SartorMKCWKKJMWAO10,
author = {Maureen A. Sartor and
Vasudeva Mahavisno and
Venkateshwar G. Keshamouni and
James D. Cavalcoli and
Zach Wright and
Alla Karnovsky and
Rork Kuick and
H. V. Jagadish and
Barbara Mirel and
Terry E. Weymouth and
Brian D. Athey and
Gilbert S. Omenn},
title = {ConceptGen: a gene set enrichment and gene set relation mapping tool},
journal = {Bioinform.},
volume = {26},
number = {4},
pages = {456--463},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp683},
doi = {10.1093/BIOINFORMATICS/BTP683},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SartorMKCWKKJMWAO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoTKMWBCAOBJ10,
author = {Jing Gao and
V. Glenn Tarcea and
Alla Karnovsky and
Barbara R. Mirel and
Terry E. Weymouth and
Christopher W. Beecher and
James D. Cavalcoli and
Brian D. Athey and
Gilbert S. Omenn and
Charles F. Burant and
H. V. Jagadish},
title = {Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic
data in the context of human metabolic networks},
journal = {Bioinform.},
volume = {26},
number = {7},
pages = {971--973},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq048},
doi = {10.1093/BIOINFORMATICS/BTQ048},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoTKMWBCAOBJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuAM10,
author = {Gang Su and
Brian D. Athey and
Fan Meng},
title = {GSearcher: Agile Attribute Querying for Biological Networks},
journal = {Bioinform.},
volume = {26},
number = {24},
pages = {3138--3139},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq597},
doi = {10.1093/BIOINFORMATICS/BTQ597},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuAM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StatesAWBA09,
author = {David J. States and
Alexander S. Ade and
Zachary C. Wright and
Aaron V. Bookvich and
Brian D. Athey},
title = {MiSearch adaptive pubMed search tool},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {974--976},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn033},
doi = {10.1093/BIOINFORMATICS/BTN033},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StatesAWBA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuanDMSAWM09,
author = {Weijian Xuan and
Manhong Dai and
Barbara Mirel and
Jean Song and
Brian D. Athey and
Stanley J. Watson and
Fan Meng},
title = {Open Biomedical Ontology-based Medline exploration},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-5}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S5-S6},
doi = {10.1186/1471-2105-10-S5-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuanDMSAWM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BoydSHSMKBRHRKECGGA09,
author = {Andrew D. Boyd and
Paul R. Saxman and
Dale A. Hunscher and
Kevin A. Smith and
Timothy D. Morris and
Michelle Kaston and
Frederick Bayoff and
Bruce Rogers and
Pamela Hayes and
Namrata Rajeev and
Eva Kline{-}Rogers and
Kim Eagle and
Daniel J. Clauw and
John F. Greden and
Lee A. Green and
Brian D. Athey},
title = {Application of Information Technology: The University of Michigan
Honest Broker: {A} Web-based Service for Clinical and Translational
Research and Practice},
journal = {J. Am. Medical Informatics Assoc.},
volume = {16},
number = {6},
pages = {784--791},
year = {2009},
url = {https://doi.org/10.1197/jamia.M2985},
doi = {10.1197/JAMIA.M2985},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/BoydSHSMKBRHRKECGGA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TarceaWABGMWCJOTCMPRASJ09,
author = {V. Glenn Tarcea and
Terry E. Weymouth and
Alexander S. Ade and
Aaron V. Bookvich and
Jing Gao and
Vasudeva Mahavisno and
Zach Wright and
Adriane Chapman and
Magesh Jayapandian and
Arzucan {\"{O}}zg{\"{u}}r and
Yuanyuan Tian and
James D. Cavalcoli and
Barbara Mirel and
Jignesh M. Patel and
Dragomir R. Radev and
Brian D. Athey and
David J. States and
H. V. Jagadish},
title = {Michigan molecular interactions r2: from interacting proteins to pathways},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {642--646},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn722},
doi = {10.1093/NAR/GKN722},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TarceaWABGMWCJOTCMPRASJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcbs/XuanDBMSAWM09,
author = {Weijian Xuan and
Manhong Dai and
Joshua Buckner and
Barbara Mirel and
Jean Song and
Brian D. Athey and
Stanley J. Watson and
Fan Meng},
editor = {Joe Zhang and
Guo{-}Zheng Li and
Jack Y. Yang},
title = {Cross-Domain Neurobiology Data Integration and Exploration},
booktitle = {International Joint Conferences on Bioinformatics, Systems Biology
and Intelligent Computing, {IJCBS} 2009, Shanghai, China, 3-5 August
2009},
pages = {37--43},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/IJCBS.2009.92},
doi = {10.1109/IJCBS.2009.92},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcbs/XuanDBMSAWM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SarntivijaiAAS08,
author = {Sirarat Sarntivijai and
Alexander S. Ade and
Brian D. Athey and
David J. States},
title = {A bioinformatics analysis of the cell line nomenclature},
journal = {Bioinform.},
volume = {24},
number = {23},
pages = {2760--2766},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn502},
doi = {10.1093/BIOINFORMATICS/BTN502},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SarntivijaiAAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/BoydHHACG07,
author = {Andrew D. Boyd and
Charlie Hosner and
Dale A. Hunscher and
Brian D. Athey and
Daniel J. Clauw and
Lee A. Green},
title = {An 'Honest Broker' mechanism to maintain privacy for patient care
and academic medical research},
journal = {Int. J. Medical Informatics},
volume = {76},
number = {5-6},
pages = {407--411},
year = {2007},
url = {https://doi.org/10.1016/j.ijmedinf.2006.09.004},
doi = {10.1016/J.IJMEDINF.2006.09.004},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/BoydHHACG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JayapandianCTYEILNSAASJ07,
author = {Magesh Jayapandian and
Adriane Chapman and
V. Glenn Tarcea and
Cong Yu and
Aaron Elkiss and
Angela Ianni and
Bin Liu and
Arnab Nandi and
Carlos Santos and
Philip C. Andrews and
Brian D. Athey and
David J. States and
H. V. Jagadish},
title = {Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle
together},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {566--571},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl859},
doi = {10.1093/NAR/GKL859},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JayapandianCTYEILNSAASJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/Athey07,
author = {Brian D. Athey},
title = {Integrative Biomedical Informatics},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {1450},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375769},
doi = {10.1109/BIBE.2007.4375769},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/bibe/Athey07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WangDXMJSAWM06,
author = {Pinglang Wang and
Manhong Dai and
Weijian Xuan and
Richard C. McEachin and
Anne U. Jackson and
Laura J. Scott and
Brian D. Athey and
Stanley J. Watson and
Fan Meng},
title = {{SNP} Function Portal: a web database for exploring the function implication
of {SNP} alleles},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {523--529},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl241},
doi = {10.1093/BIOINFORMATICS/BTL241},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/WangDXMJSAWM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BoydHKHSAGC05,
author = {Andrew D. Boyd and
Dale A. Hunscher and
Adam J. Kramer and
Charles Hosner and
Paul R. Saxman and
Brian D. Athey and
John F. Greden and
Daniel J. Clauw},
title = {The "Honest Broker" Method of Integrating Interdisciplinary
research Data},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-002-1.615605/f-001-1.615606/a-199-1.616087/a-200-1.616084},
timestamp = {Wed, 17 Apr 2024 11:48:22 +0200},
biburl = {https://dblp.org/rec/conf/amia/BoydHKHSAGC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/HackerNA05,
author = {Thomas J. Hacker and
Brian D. Noble and
Brian D. Athey},
title = {Adaptive data block scheduling for parallel {TCP} streams},
booktitle = {Proceedings of the 14th {IEEE} International Symposium on High Performance
Distributed Computing, HPDC-14, Research Triangle Park, North Carolina,
USA, 24-27 July 2005},
pages = {265--275},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/HPDC.2005.1520970},
doi = {10.1109/HPDC.2005.1520970},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/HackerNA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grid/KirschnerHAA04,
author = {Beth A. Kirschner and
Thomas J. Hacker and
William A. Adamson and
Brian D. Athey},
editor = {Rajkumar Buyya},
title = {Walden: {A} Scalable Solution for Grid Account Management},
booktitle = {5th International Workshop on Grid Computing {(GRID} 2004), 8 November
2004, Pittsburgh, PA, USA, Proceedings},
pages = {102--109},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/GRID.2004.66},
doi = {10.1109/GRID.2004.66},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/grid/KirschnerHAA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/infocom/HackerNA04,
author = {Thomas J. Hacker and
Brian D. Noble and
Brian D. Athey},
title = {Improving Throughput and Maintaining Fairness using Parallel {TCP}},
booktitle = {Proceedings {IEEE} {INFOCOM} 2004, The 23rd Annual Joint Conference
of the {IEEE} Computer and Communications Societies, Hong Kong, China,
March 7-11, 2004},
pages = {2480--2489},
publisher = {{IEEE}},
year = {2004},
url = {https://doi.org/10.1109/INFCOM.2004.1354669},
doi = {10.1109/INFCOM.2004.1354669},
timestamp = {Wed, 16 Oct 2019 14:14:51 +0200},
biburl = {https://dblp.org/rec/conf/infocom/HackerNA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/HackerAN02,
author = {Thomas J. Hacker and
Brian D. Athey and
Brian Noble},
title = {The End-to-End Performance Effects of Parallel {TCP} Sockets on a
Lossy Wide-Area Network},
booktitle = {16th International Parallel and Distributed Processing Symposium {(IPDPS}
2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts
Proceedings},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/IPDPS.2002.1015527},
doi = {10.1109/IPDPS.2002.1015527},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/HackerAN02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jcis/ThigpenHAM02,
author = {William Thigpen and
Thomas J. Hacker and
Brian D. Athey and
Laura F. McGinnis},
editor = {H. John Caulfield and
Shu{-}Heng Chen and
Heng{-}Da Cheng and
Richard J. Duro and
Vasant G. Honavar and
Etienne E. Kerre and
Mi Lu and
Manuel Gra{\~{n}}a Romay and
Timothy K. Shih and
Dan Ventura and
Paul P. Wang and
Yuanyuan Yang},
title = {Distributed Accounting on the Grid},
booktitle = {Proceedings of the 6th Joint Conference on Information Science, March
8-13, 2002, Research Triangle Park, North Carolina, {USA}},
pages = {1147--1150},
publisher = {{JCIS} / Association for Intelligent Machinery, Inc.},
year = {2002},
timestamp = {Mon, 13 Nov 2017 18:15:11 +0100},
biburl = {https://dblp.org/rec/conf/jcis/ThigpenHAM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/HackerNA02,
author = {Thomas J. Hacker and
Brian Noble and
Brian D. Athey},
editor = {Roscoe C. Giles and
Daniel A. Reed and
Kathryn Kelley},
title = {The effects of systemic packet loss on aggregate {TCP} flows},
booktitle = {Proceedings of the 2002 {ACM/IEEE} conference on Supercomputing, Baltimore,
Maryland, USA, November 16-22, 2002, {CD-ROM}},
pages = {52:1--52:15},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/SC.2002.10029},
doi = {10.1109/SC.2002.10029},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/HackerNA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grid/HackerA01,
author = {Thomas J. Hacker and
Brian D. Athey},
editor = {Craig A. Lee},
title = {A Methodology for Account Management in Grid Computing Environments},
booktitle = {Grid Computing - {GRID} 2001, Second International Workshop, Denver,
CO, USA, November 12, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2242},
pages = {133--144},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45644-9\_13},
doi = {10.1007/3-540-45644-9\_13},
timestamp = {Tue, 14 May 2019 10:00:44 +0200},
biburl = {https://dblp.org/rec/conf/grid/HackerA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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