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ORCIDBibTeX records: Marc Baaden
@article{DBLP:journals/jcisd/VersiniSFTAHENABFGCCSST24,
author = {Raphaelle Versini and
Sujith Sritharan and
Burcu Ayka{\c{c}} Fas and
Thibault Tubiana and
Sana Zineb Aimeur and
Julien Henri and
Marie Erard and
Oliver N{\"{u}}sse and
Jessica Andreani and
Marc Baaden and
Patrick Fuchs and
Tatiana Galochkina and
Alexios Chatzigoulas and
Zoe Cournia and
Hubert Santuz and
Sophie Sacquin{-}Mora and
Antoine Taly},
title = {A Perspective on the Prospective Use of {AI} in Protein Structure
Prediction},
journal = {J. Chem. Inf. Model.},
volume = {64},
number = {1},
pages = {26--41},
year = {2024},
url = {https://doi.org/10.1021/acs.jcim.3c01361},
doi = {10.1021/ACS.JCIM.3C01361},
timestamp = {Tue, 30 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/VersiniSFTAHENABFGCCSST24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cgf/KutakVIKBBKM23,
author = {David Kut{\'{a}}k and
Pere{-}Pau V{\'{a}}zquez and
Tobias Isenberg and
Michael Krone and
Marc Baaden and
Jan Byska and
Barbora Kozl{\'{\i}}kov{\'{a}} and
Haichao Miao},
title = {State of the Art of Molecular Visualization in Immersive Virtual Environments},
journal = {Comput. Graph. Forum},
volume = {42},
number = {6},
year = {2023},
url = {https://doi.org/10.1111/cgf.14738},
doi = {10.1111/CGF.14738},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cgf/KutakVIKBBKM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/CoreyBC23,
author = {Robin A. Corey and
Marc Baaden and
Matthieu Chavent},
title = {A brief history of visualizing membrane systems in molecular dynamics
simulations},
journal = {Frontiers Bioinform.},
volume = {3},
year = {2023},
url = {https://doi.org/10.3389/fbinf.2023.1149744},
doi = {10.3389/FBINF.2023.1149744},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/CoreyBC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithms/LanrezacLSFB22,
author = {Andr{\'{e}} Lanrezac and
Benoist Laurent and
Hubert Santuz and
Nicolas F{\'{e}}rey and
Marc Baaden},
title = {Fast and Interactive Positioning of Proteins within Membranes},
journal = {Algorithms},
volume = {15},
number = {11},
pages = {415},
year = {2022},
url = {https://doi.org/10.3390/a15110415},
doi = {10.3390/A15110415},
timestamp = {Sun, 25 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithms/LanrezacLSFB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SommerIB22,
author = {Bj{\"{o}}rn Sommer and
Daisuke Inoue and
Marc Baaden},
title = {Design {X} Bioinformatics: a community-driven initiative to connect
bioinformatics and design},
journal = {J. Integr. Bioinform.},
volume = {19},
number = {2},
year = {2022},
url = {https://doi.org/10.1515/jib-2022-0037},
doi = {10.1515/JIB-2022-0037},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SommerIB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SpalvieriMLFSCB22,
author = {Davide Spalvieri and
Anne{-}Marine Mauviel and
Matthieu Lambert and
Nicolas F{\'{e}}rey and
Sophie Sacquin{-}Mora and
Matthieu Chavent and
Marc Baaden},
title = {Design - a new way to look at old molecules},
journal = {J. Integr. Bioinform.},
volume = {19},
number = {2},
year = {2022},
url = {https://doi.org/10.1515/jib-2022-0020},
doi = {10.1515/JIB-2022-0020},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SpalvieriMLFSCB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vrih/Baaden22,
author = {Marc Baaden},
title = {Deep inside molecules - digital twins at the nanoscale},
journal = {Virtual Real. Intell. Hardw.},
volume = {4},
number = {4},
pages = {324--341},
year = {2022},
url = {https://doi.org/10.1016/j.vrih.2022.03.001},
doi = {10.1016/J.VRIH.2022.03.001},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/vrih/Baaden22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pnas/LopezDBPGSBBLIL21,
author = {N{\'{u}}ria L{\'{o}}pez and
Luigi Del Debbio and
Marc Baaden and
Matej Praprotnik and
Laura Grigori and
Catarina Sim{\~{o}}es and
Serge Bogaerts and
Florian Berberich and
Thomas Lippert and
Janne Ignatius and
Philippe Lavocat and
Oriol Pineda and
Maria Grazia Giuffreda and
Sergi Girona and
Dieter Kranzlm{\"{u}}ller and
Michael M. Resch and
Gabriella Scipione and
Thomas C. Schulthess},
title = {Lessons learned from urgent computing in Europe: Tackling the {COVID-19}
pandemic},
journal = {Proc. Natl. Acad. Sci. {USA}},
volume = {118},
number = {46},
pages = {e2024891118},
year = {2021},
url = {https://doi.org/10.1073/pnas.2024891118},
doi = {10.1073/PNAS.2024891118},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pnas/LopezDBPGSBBLIL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/molva-ws/MartinezKB19,
author = {Xavier Martinez and
Michael Krone and
Marc Baaden},
editor = {Jan Byska and
Michael Krone and
Bj{\"{o}}rn Sommer},
title = {QuickSES: {A} Library for Fast Computation of Solvent Excluded Surfaces},
booktitle = {2nd Workshop on Molecular Graphics and Visual Analysis of Molecular
Data, MolVA@EuroVis 2019, Porto, Portugal, June 3, 2019},
pages = {11--15},
publisher = {Eurographics Association},
year = {2019},
url = {https://doi.org/10.2312/molva.20191095},
doi = {10.2312/MOLVA.20191095},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/molva-ws/MartinezKB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MaesMDLGMLB18,
author = {Alexandre Maes and
Xavier Martinez and
Karen Druart and
Benoist Laurent and
Sean Gu{\'{e}}gan and
Christophe H. Marchand and
St{\'{e}}phane D. Lemaire and
Marc Baaden},
title = {MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {2},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0006},
doi = {10.1515/JIB-2018-0006},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MaesMDLGMLB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SommerBKW18,
author = {Bj{\"{o}}rn Sommer and
Marc Baaden and
Michael Krone and
Andrew J. Woods},
title = {From Virtual Reality to Immersive Analytics in Bioinformatics},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {2},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0043},
doi = {10.1515/JIB-2018-0043},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SommerBKW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TrelletFFBB18,
author = {Mika{\"{e}}l Trellet and
Nicolas F{\'{e}}rey and
Jakub Flotynski and
Marc Baaden and
Patrick Bourdot},
title = {Semantics for an Integrative and Immersive Pipeline Combining Visualization
and Analysis of Molecular Data},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {2},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0004},
doi = {10.1515/JIB-2018-0004},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/TrelletFFBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BaadenDFPWT18,
author = {Marc Baaden and
Olivier Delalande and
Nicolas F{\'{e}}rey and
Samuela Pasquali and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Antoine Taly},
title = {Ten simple rules to create a serious game, illustrated with examples
from structural biology},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {3},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1005955},
doi = {10.1371/JOURNAL.PCBI.1005955},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BaadenDFPWT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/shonan-reports/ODonoghueSB18,
author = {Se{\'{a}}n I. O'Donoghue and
Masakazu Sekijima and
Marc Baaden},
title = {Web Molecular Graphics: Emerging Technologies {\&} Standards {(NII}
Shonan Meeting 2018-19)},
journal = {{NII} Shonan Meet. Rep.},
volume = {2018},
year = {2018},
url = {https://shonan.nii.ac.jp/seminars/142/},
timestamp = {Thu, 04 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/shonan-reports/ODonoghueSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cgf/KozlikovaKFLBBV17,
author = {Barbora Kozl{\'{\i}}kov{\'{a}} and
Michael Krone and
Martin Falk and
Norbert Lindow and
Marc Baaden and
Daniel Baum and
Ivan Viola and
J{\'{u}}lius Parulek and
Hans{-}Christian Hege},
title = {Visualization of Biomolecular Structures: State of the Art Revisited},
journal = {Comput. Graph. Forum},
volume = {36},
number = {8},
pages = {178--204},
year = {2017},
url = {https://doi.org/10.1111/cgf.13072},
doi = {10.1111/CGF.13072},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cgf/KozlikovaKFLBBV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vissym/AlharbiAMKRBLC17,
author = {Naif Alharbi and
Mohammad Alharbi and
Xavier Martinez and
Michael Krone and
Alexander S. Rose and
Marc Baaden and
Robert S. Laramee and
Matthieu Chavent},
editor = {Barbora Kozl{\'{\i}}kov{\'{a}} and
Tobias Schreck and
Thomas Wischgoll},
title = {Molecular Visualization of Computational Biology Data: {A} Survey
of Surveys},
booktitle = {19th Eurographics Conference on Visualization, EuroVis 2017 - Short
Papers, Barcelona, Spain, June 12-16, 2017},
pages = {133--137},
publisher = {Eurographics Association},
year = {2017},
url = {https://doi.org/10.2312/eurovisshort.20171146},
doi = {10.2312/EUROVISSHORT.20171146},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vissym/AlharbiAMKRBLC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-04176,
author = {Marc Baaden and
Olivier Delalande and
Nicolas F{\'{e}}rey and
Samuela Pasquali and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Antoine Taly},
title = {10 simple rules to create a serious game, illustrated with examples
from structural biology},
journal = {CoRR},
volume = {abs/1708.04176},
year = {2017},
url = {http://arxiv.org/abs/1708.04176},
eprinttype = {arXiv},
eprint = {1708.04176},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1708-04176.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cgf/KroneKLBBPHV16,
author = {Michael Krone and
Barbora Kozl{\'{\i}}kov{\'{a}} and
Norbert Lindow and
Marc Baaden and
Daniel Baum and
J{\'{u}}lius Parulek and
Hans{-}Christian Hege and
Ivan Viola},
title = {Visual Analysis of Biomolecular Cavities: State of the Art},
journal = {Comput. Graph. Forum},
volume = {35},
number = {3},
pages = {527--551},
year = {2016},
url = {https://doi.org/10.1111/cgf.12928},
doi = {10.1111/CGF.12928},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cgf/KroneKLBBPHV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaurentCCDPDSB15,
author = {Benoist Laurent and
Matthieu Chavent and
Tristan Cragnolini and
Anna Caroline E. Dahl and
Samuela Pasquali and
Philippe Derreumaux and
Mark S. P. Sansom and
Marc Baaden},
title = {Epock: rapid analysis of protein pocket dynamics},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1478--1480},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu822},
doi = {10.1093/BIOINFORMATICS/BTU822},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaurentCCDPDSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vissym/KozlikovaKLFBBV15,
author = {Barbora Kozl{\'{\i}}kov{\'{a}} and
Michael Krone and
Norbert Lindow and
Martin Falk and
Marc Baaden and
Daniel Baum and
Ivan Viola and
J{\'{u}}lius Parulek and
Hans{-}Christian Hege},
editor = {Rita Borgo and
Fabio Ganovelli and
Ivan Viola},
title = {Visualization of Biomolecular Structures: State of the Art},
booktitle = {17th Eurographics Conference on Visualization, EuroVis 2015 - State
of the Art Reports, Cagliari, Sardinia, Italy, May 25-29, 2015},
pages = {61--81},
publisher = {Eurographics Association},
year = {2015},
url = {https://doi.org/10.2312/eurovisstar.20151112},
doi = {10.2312/EUROVISSTAR.20151112},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vissym/KozlikovaKLFBBV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/WangBWL14,
author = {Mian Wang and
Marc Baaden and
Jianyi Wang and
Zhiqun Liang},
title = {A Cooperative Mechanism of Clotrimazoles in {P450} Revealed by the
Dissociation Picture of Clotrimazole from {P450}},
journal = {J. Chem. Inf. Model.},
volume = {54},
number = {4},
pages = {1218--1225},
year = {2014},
url = {https://doi.org/10.1021/ci400660e},
doi = {10.1021/CI400660E},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/WangBWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/TrelletFBB14,
author = {Mika{\"{e}}l Trellet and
Nicolas F{\'{e}}rey and
Marc Baaden and
Patrick Bourdot},
editor = {M{\'{a}}rio Forjaz Secca and
Jan Schier and
Guy Plantier and
Tanja Schultz and
Ana L. N. Fred and
Hugo Gamboa},
title = {Content-guided Navigation in Multimeric Molecular Complexes},
booktitle = {{BIOIMAGING} 2014 - Proceedings of the International Conference on
Bioimaging, ESEO, Angers, Loire Valley, France, 3-6 March, 2014},
pages = {76--81},
publisher = {SciTePress},
year = {2014},
url = {https://doi.org/10.5220/0004914300760081},
doi = {10.5220/0004914300760081},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biostec/TrelletFBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ldav/DoutreligneCPDB14,
author = {Sebastien Doutreligne and
Tristan Cragnolini and
Samuela Pasquali and
Philippe Derreumaux and
Marc Baaden},
editor = {Hank Childs and
Renato Pajarola and
Venkatram Vishwanath},
title = {UnityMol: Interactive scientific visualization for integrative biology},
booktitle = {4th {IEEE} Symposium on Large Data Analysis and Visualization, {LDAV}
2014, Paris, France, November 9-10, 2014},
pages = {109--110},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/LDAV.2014.7013213},
doi = {10.1109/LDAV.2014.7013213},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ldav/DoutreligneCPDB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PartonTBS13,
author = {Daniel L. Parton and
Alex Tek and
Marc Baaden and
Mark S. P. Sansom},
title = {Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin
Observed by {MD} Simulations},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {4},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003034},
doi = {10.1371/JOURNAL.PCBI.1003034},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/PartonTBS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/DreherPTCBFLRR13,
author = {Matthieu Dreher and
Marc Piuzzi and
Ahmed Turki and
Matthieu Chavent and
Marc Baaden and
Nicolas F{\'{e}}rey and
S{\'{e}}bastien Limet and
Bruno Raffin and
Sophie Robert},
editor = {Vassil Alexandrov and
Michael Lees and
Valeria V. Krzhizhanovskaya and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {Interactive Molecular Dynamics: Scaling up to Large Systems},
booktitle = {Proceedings of the International Conference on Computational Science,
{ICCS} 2013, Barcelona, Spain, 5-7 June, 2013},
series = {Procedia Computer Science},
volume = {18},
pages = {20--29},
publisher = {Elsevier},
year = {2013},
url = {https://doi.org/10.1016/j.procs.2013.05.165},
doi = {10.1016/J.PROCS.2013.05.165},
timestamp = {Wed, 12 Jul 2023 15:16:18 +0200},
biburl = {https://dblp.org/rec/conf/iccS/DreherPTCBFLRR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChaventLKBNEB11,
author = {Matthieu Chavent and
Bruno L{\'{e}}vy and
Michael Krone and
Katrin Bidmon and
Jean{-}Philippe Nomine and
Thomas Ertl and
Marc Baaden},
title = {GPU-powered tools boost molecular visualization},
journal = {Briefings Bioinform.},
volume = {12},
number = {6},
pages = {689--701},
year = {2011},
url = {https://doi.org/10.1093/bib/bbq089},
doi = {10.1093/BIB/BBQ089},
timestamp = {Thu, 15 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChaventLKBNEB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/ChaventVTLRRB11,
author = {Matthieu Chavent and
Antoine Vanel and
Alex Tek and
Bruno L{\'{e}}vy and
Sophie Robert and
Bruno Raffin and
Marc Baaden},
title = {GPU-accelerated atom and dynamic bond visualization using hyperballs:
{A} unified algorithm for balls, sticks, and hyperboloids},
journal = {J. Comput. Chem.},
volume = {32},
number = {13},
pages = {2924--2935},
year = {2011},
url = {https://doi.org/10.1002/jcc.21861},
doi = {10.1002/JCC.21861},
timestamp = {Thu, 15 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/ChaventVTLRRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/hal/Baaden10,
author = {Marc Baaden},
title = {Simulations num{\'{e}}riques de syst{\`{e}}mes biologiques complexes
: dynamique, structure et fonction de transporteurs, canaux et enzymes.
(Numerical simulations of complex biological systems: dynamics, structure
and function of transporters, channels and enzymes)},
year = {2010},
url = {https://tel.archives-ouvertes.fr/tel-00541521},
timestamp = {Fri, 29 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/hal/Baaden10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GueroultPAHB10,
author = {Marc Gueroult and
Daniel Picot and
Jos{\'{e}}phine Abi{-}Ghanem and
Brigitte Hartmann and
Marc Baaden},
title = {How Cations Can Assist DNase {I} in {DNA} Binding and Hydrolysis},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {11},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1001000},
doi = {10.1371/JOURNAL.PCBI.1001000},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GueroultPAHB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/DelalandeFLGHB10,
author = {Olivier Delalande and
Nicolas F{\'{e}}rey and
Benoist Laurent and
Marc Gueroult and
Brigitte Hartmann and
Marc Baaden},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Multi-Resolution Approach for Interactively Locating Functionally
Linked Ion Binding Sites by Steering Small Molecules into Electrostatic
Potential Maps Using a Haptic Device},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {205--215},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/delalande.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/DelalandeFLGHB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/DelalandeFGB09,
author = {Olivier Delalande and
Nicolas F{\'{e}}rey and
Gilles Grasseau and
Marc Baaden},
title = {Complex molecular assemblies at hand via interactive simulations},
journal = {J. Comput. Chem.},
volume = {30},
number = {15},
pages = {2375--2387},
year = {2009},
url = {https://doi.org/10.1002/jcc.21235},
doi = {10.1002/JCC.21235},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/DelalandeFGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vriphys/FereyDGB08,
author = {Nicolas F{\'{e}}rey and
Olivier Delalande and
Gilles Grasseau and
Marc Baaden},
editor = {Fran{\c{c}}ois Faure and
Matthias Teschner},
title = {From Interactive to Immersive Molecular Dynamics},
booktitle = {Proceedings of the Fifth Workshop on Virtual Reality Interactions
and Physical Simulations, {VRIPHYS} 2008, Grenoble, France, 2008},
pages = {89--96},
publisher = {Eurographics Association},
year = {2008},
url = {https://doi.org/10.2312/PE/vriphys/vriphys08/089-096},
doi = {10.2312/PE/VRIPHYS/VRIPHYS08/089-096},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vriphys/FereyDGB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vrst/FereyDGB08,
author = {Nicolas F{\'{e}}rey and
Olivier Delalande and
Gilles Grasseau and
Marc Baaden},
editor = {Steven Feiner and
Daniel Thalmann and
Pascal Guitton and
Bernd Fr{\"{o}}hlich and
Ernst Kruijff and
Martin Hachet},
title = {A {VR} framework for interacting with molecular simulations},
booktitle = {Proceedings of the {ACM} Symposium on Virtual Reality Software and
Technology, {VRST} 2008, Bordeaux, France, October 27-29, 2008},
pages = {91--94},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1450579.1450598},
doi = {10.1145/1450579.1450598},
timestamp = {Thu, 29 Nov 2018 12:50:42 +0100},
biburl = {https://dblp.org/rec/conf/vrst/FereyDGB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/parco/KriegerLDTBLLSB07,
author = {Elmar Krieger and
Laurent Leger and
Marie{-}Pierre Durrieu and
Nada Taib and
Peter Bond and
Michel Laguerre and
Richard Lavery and
Mark S. P. Sansom and
Marc Baaden},
editor = {Christian H. Bischof and
H. Martin B{\"{u}}cker and
Paul Gibbon and
Gerhard R. Joubert and
Thomas Lippert and
Bernd Mohr and
Frans J. Peters},
title = {Atomistic Modeling of the Membrane-Embedded Synaptic Fusion Complex:
a Grand Challenge Project on the {DEISA} {HPC} Infrastructure},
booktitle = {Parallel Computing: Architectures, Algorithms and Applications, ParCo
2007, Forschungszentrum J{\"{u}}lich and {RWTH} Aachen University,
Germany, 4-7 September 2007},
series = {Advances in Parallel Computing},
volume = {15},
pages = {729--736},
publisher = {{IOS} Press},
year = {2007},
timestamp = {Mon, 16 Feb 2009 08:47:23 +0100},
biburl = {https://dblp.org/rec/conf/parco/KriegerLDTBLLSB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/hal/Baaden03,
author = {Marc Baaden},
title = {Etudes de mol{\'{e}}cules extractantes en solution et aux interfaces
liquide-liquide : aspects structuraux et m{\'{e}}canistiques
des effets de synergie},
school = {Louis Pasteur University, Strasbourg, Alsace, France},
year = {2003},
url = {https://tel.archives-ouvertes.fr/tel-00002812},
timestamp = {Tue, 21 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/hal/Baaden03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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