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ORCIDBibTeX records: Paola Bonizzoni
@article{DBLP:journals/bioinformatics/CozziRRGKBB23,
author = {Davide Cozzi and
Massimiliano Rossi and
Simone Rubinacci and
Travis Gagie and
Dominik K{\"{o}}ppl and
Christina Boucher and
Paola Bonizzoni},
title = {{\(\mu\)}- {PBWT:} a lightweight r-indexing of the {PBWT} for storing
and querying {UK} Biobank data},
journal = {Bioinform.},
volume = {39},
number = {9},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad552},
doi = {10.1093/BIOINFORMATICS/BTAD552},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CozziRRGKBB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itat/CozziBD23,
author = {Davide Cozzi and
Paola Bonizzoni and
Luca Denti},
editor = {Brona Brejov{\'{a}} and
Lucie Ciencialov{\'{a}} and
Martin Holena and
R{\'{o}}bert Jajcay and
Tatiana Jajcayov{\'{a}} and
Matej Lexa and
Frantisek Mr{\'{a}}z and
Dana Pardubsk{\'{a}} and
Martin Pl{\'{a}}tek},
title = {ESGq: Alternative Splicing Events Quantification across Conditions
based on Event Splicing Graphs},
booktitle = {Proceedings of the 23rd Conference Information Technologies - Applications
and Theory {(ITAT} 2023), Tatransk{\'{e}} Matliare, Slovakia,
September 22-26, 2023},
series = {{CEUR} Workshop Proceedings},
volume = {3498},
pages = {242--249},
publisher = {CEUR-WS.org},
year = {2023},
url = {https://ceur-ws.org/Vol-3498/paper31.pdf},
timestamp = {Fri, 24 Nov 2023 12:33:41 +0100},
biburl = {https://dblp.org/rec/conf/itat/CozziBD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/BonizzoniVPRS23,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Raffaella Rizzi and
Mattia Sgr{\`{o}}},
editor = {Ignacio Rojas and
Olga Valenzuela and
Fernando Rojas Ruiz and
Luis Javier Herrera and
Francisco M. Ortu{\~{n}}o},
title = {Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via {PBWT}},
booktitle = {Bioinformatics and Biomedical Engineering - 10th International Work-Conference,
{IWBBIO} 2023, Meloneras, Gran Canaria, Spain, July 12-14, 2023 Proceedings,
Part {I}},
series = {Lecture Notes in Computer Science},
volume = {13919},
pages = {62--76},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-34953-9\_5},
doi = {10.1007/978-3-031-34953-9\_5},
timestamp = {Tue, 26 Dec 2023 17:13:20 +0100},
biburl = {https://dblp.org/rec/conf/iwbbio/BonizzoniVPRS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spire/BonizzoniBCGKR23,
author = {Paola Bonizzoni and
Christina Boucher and
Davide Cozzi and
Travis Gagie and
Dominik K{\"{o}}ppl and
Massimiliano Rossi},
editor = {Franco Maria Nardini and
Nadia Pisanti and
Rossano Venturini},
title = {Data Structures for SMEM-Finding in the {PBWT}},
booktitle = {String Processing and Information Retrieval - 30th International Symposium,
{SPIRE} 2023, Pisa, Italy, September 26-28, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14240},
pages = {89--101},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-43980-3\_8},
doi = {10.1007/978-3-031-43980-3\_8},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/spire/BonizzoniBCGKR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/BonizzoniCFPPPR22,
author = {Paola Bonizzoni and
Matteo Costantini and
Clelia de Felice and
Alessia Petescia and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi and
Jens Stoye and
Rocco Zaccagnino and
Rosalba Zizza},
title = {Numeric Lyndon-based feature embedding of sequencing reads for machine
learning approaches},
journal = {Inf. Sci.},
volume = {607},
pages = {458--476},
year = {2022},
url = {https://doi.org/10.1016/j.ins.2022.06.005},
doi = {10.1016/J.INS.2022.06.005},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/BonizzoniCFPPPR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RossiOBLGB22,
author = {Massimiliano Rossi and
Marco Oliva and
Paola Bonizzoni and
Ben Langmead and
Travis Gagie and
Christina Boucher},
title = {Finding Maximal Exact Matches Using the r-Index},
journal = {J. Comput. Biol.},
volume = {29},
number = {2},
pages = {188--194},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0445},
doi = {10.1089/CMB.2021.0445},
timestamp = {Fri, 01 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/RossiOBLGB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/BaaijensBBVPRS22,
author = {Jasmijn A. Baaijens and
Paola Bonizzoni and
Christina Boucher and
Gianluca Della Vedova and
Yuri Pirola and
Raffaella Rizzi and
Jouni Sir{\'{e}}n},
title = {Computational graph pangenomics: a tutorial on data structures and
their applications},
journal = {Nat. Comput.},
volume = {21},
number = {1},
pages = {81--108},
year = {2022},
url = {https://doi.org/10.1007/s11047-022-09882-6},
doi = {10.1007/S11047-022-09882-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/BaaijensBBVPRS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dlt/BonizzoniFPRZZ22,
author = {Paola Bonizzoni and
Clelia De Felice and
Yuri Pirola and
Raffaella Rizzi and
Rocco Zaccagnino and
Rosalba Zizza},
editor = {Volker Diekert and
Mikhail V. Volkov},
title = {Can Formal Languages Help Pangenomics to Represent and Analyze Multiple
Genomes?},
booktitle = {Developments in Language Theory - 26th International Conference, {DLT}
2022, Tampa, FL, USA, May 9-13, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13257},
pages = {3--12},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-05578-2\_1},
doi = {10.1007/978-3-031-05578-2\_1},
timestamp = {Thu, 09 Nov 2023 20:20:35 +0100},
biburl = {https://dblp.org/rec/conf/dlt/BonizzoniFPRZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/BonizzoniPPRZZ22,
author = {Paola Bonizzoni and
Alessia Petescia and
Yuri Pirola and
Raffaella Rizzi and
Rocco Zaccagnino and
Rosalba Zizza},
editor = {Ignacio Rojas and
Olga Valenzuela and
Fernando Rojas and
Luis Javier Herrera and
Francisco M. Ortu{\~{n}}o},
title = {KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints},
booktitle = {Bioinformatics and Biomedical Engineering - 9th International Work-Conference,
{IWBBIO} 2022, Maspalomas, Gran Canaria, Spain, June 27-30, 2022,
Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {13347},
pages = {436--449},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-07802-6\_37},
doi = {10.1007/978-3-031-07802-6\_37},
timestamp = {Tue, 26 Dec 2023 17:13:20 +0100},
biburl = {https://dblp.org/rec/conf/iwbbio/BonizzoniPPRZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-13884,
author = {Paola Bonizzoni and
Matteo Costantini and
Clelia De Felice and
Alessia Petescia and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi and
Jens Stoye and
Rocco Zaccagnino and
Rosalba Zizza},
title = {Numeric Lyndon-based feature embedding of sequencing reads for machine
learning approaches},
journal = {CoRR},
volume = {abs/2202.13884},
year = {2022},
url = {https://arxiv.org/abs/2202.13884},
eprinttype = {arXiv},
eprint = {2202.13884},
timestamp = {Thu, 03 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-13884.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CiccolellaBDBPV21,
author = {Simone Ciccolella and
Giulia Bernardini and
Luca Denti and
Paola Bonizzoni and
Marco Previtali and
Gianluca Della Vedova},
title = {Triplet-based similarity score for fully multilabeled trees with poly-occurring
labels},
journal = {Bioinform.},
volume = {37},
number = {2},
pages = {178--184},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa676},
doi = {10.1093/BIOINFORMATICS/BTAA676},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CiccolellaBDBPV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CiccolellaRGPSB21,
author = {Simone Ciccolella and
Camir Ricketts and
Mauricio Soto Gomez and
Murray Patterson and
Dana Silverbush and
Paola Bonizzoni and
Iman Hajirasouliha and
Gianluca Della Vedova},
title = {Inferring cancer progression from Single-Cell Sequencing while allowing
mutation losses},
journal = {Bioinform.},
volume = {37},
number = {3},
pages = {326--333},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa722},
doi = {10.1093/BIOINFORMATICS/BTAA722},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CiccolellaRGPSB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DentiPPCVRB21,
author = {Luca Denti and
Yuri Pirola and
Marco Previtali and
Tamara Ceccato and
Gianluca Della Vedova and
Raffaella Rizzi and
Paola Bonizzoni},
title = {Shark: fishing relevant reads in an RNA-Seq sample},
journal = {Bioinform.},
volume = {37},
number = {4},
pages = {464--472},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa779},
doi = {10.1093/BIOINFORMATICS/BTAA779},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DentiPPCVRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CiccolellaDBVPP21a,
author = {Simone Ciccolella and
Luca Denti and
Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali},
title = {{MALVIRUS:} an integrated application for viral variant analysis},
journal = {{BMC} Bioinform.},
volume = {22-S},
number = {15},
pages = {625},
year = {2021},
url = {https://doi.org/10.1186/s12859-022-04668-0},
doi = {10.1186/S12859-022-04668-0},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CiccolellaDBVPP21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniFZZ21,
author = {Paola Bonizzoni and
Clelia De Felice and
Rocco Zaccagnino and
Rosalba Zizza},
title = {On the longest common prefix of suffixes in an inverse Lyndon factorization
and other properties},
journal = {Theor. Comput. Sci.},
volume = {862},
pages = {24--41},
year = {2021},
url = {https://doi.org/10.1016/j.tcs.2020.10.034},
doi = {10.1016/J.TCS.2020.10.034},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniFZZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniVPPR21,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {Computing the multi-string {BWT} and {LCP} array in external memory},
journal = {Theor. Comput. Sci.},
volume = {862},
pages = {42--58},
year = {2021},
url = {https://doi.org/10.1016/j.tcs.2020.11.041},
doi = {10.1016/J.TCS.2020.11.041},
timestamp = {Tue, 23 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVPPR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniKPR21,
author = {Paola Bonizzoni and
Lila Kari and
Ion Petre and
Grzegorz Rozenberg},
title = {Building bridges - Honoring Nata{\v{s}}a Jonoska on the occasion of
her 60th birthday},
journal = {Theor. Comput. Sci.},
volume = {894},
pages = {1--2},
year = {2021},
url = {https://doi.org/10.1016/j.tcs.2021.10.021},
doi = {10.1016/J.TCS.2021.10.021},
timestamp = {Sat, 21 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniKPR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/CiccolellaPBV21,
author = {Simone Ciccolella and
Murray Patterson and
Paola Bonizzoni and
Gianluca Della Vedova},
title = {Effective Clustering for Single Cell Sequencing Cancer Data},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {25},
number = {11},
pages = {4068--4078},
year = {2021},
url = {https://doi.org/10.1109/JBHI.2021.3081380},
doi = {10.1109/JBHI.2021.3081380},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/CiccolellaPBV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/BonizzoniFPPRSZ21,
author = {Paola Bonizzoni and
Clelia De Felice and
Alessia Petescia and
Yuri Pirola and
Raffaella Rizzi and
Jens Stoye and
Rocco Zaccagnino and
Rosalba Zizza},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as
Representations of Sequencing Reads for Machine Learning},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {16--28},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_2},
doi = {10.1007/978-3-030-74432-8\_2},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/BonizzoniFPPRSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wads/BernardiniBG21,
author = {Giulia Bernardini and
Paola Bonizzoni and
Pawel Gawrychowski},
editor = {Anna Lubiw and
Mohammad R. Salavatipour},
title = {Incomplete Directed Perfect Phylogeny in Linear Time},
booktitle = {Algorithms and Data Structures - 17th International Symposium, {WADS}
2021, Virtual Event, August 9-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12808},
pages = {172--185},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-83508-8\_13},
doi = {10.1007/978-3-030-83508-8\_13},
timestamp = {Thu, 12 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wads/BernardiniBG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CalabriaBMSBPBT20,
author = {Andrea Calabria and
Stefano Beretta and
Ivan Merelli and
Giulio Spinozzi and
Stefano Brasca and
Yuri Pirola and
Fabrizio Benedicenti and
Erika Tenderini and
Paola Bonizzoni and
Luciano Milanesi and
Eugenio Montini},
title = {{\(\gamma\)}-TRIS: a graph-algorithm for comprehensive identification
of vector genomic insertion sites},
journal = {Bioinform.},
volume = {36},
number = {5},
pages = {1622--1624},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz747},
doi = {10.1093/BIOINFORMATICS/BTZ747},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CalabriaBMSBPBT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CiccolellaGPVHB20,
author = {Simone Ciccolella and
Mauricio Soto Gomez and
Murray D. Patterson and
Gianluca Della Vedova and
Iman Hajirasouliha and
Paola Bonizzoni},
title = {gpps: an ILP-based approach for inferring cancer progression with
mutation losses from single cell data},
journal = {{BMC} Bioinform.},
volume = {21-S},
number = {1},
pages = {413},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03736-7},
doi = {10.1186/S12859-020-03736-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CiccolellaGPVHB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/BonizzoniFZZ20,
author = {Paola Bonizzoni and
Clelia De Felice and
Rocco Zaccagnino and
Rosalba Zizza},
title = {Unavoidable Sets, Prefix Graphs and Regularity of Circular Splicing
Languages},
journal = {Fundam. Informaticae},
volume = {171},
number = {1-4},
pages = {81--95},
year = {2020},
url = {https://doi.org/10.3233/FI-2020-1873},
doi = {10.3233/FI-2020-1873},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fuin/BonizzoniFZZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/0001BG20,
author = {Giulia Bernardini and
Paola Bonizzoni and
Pawel Gawrychowski},
editor = {Inge Li G{\o}rtz and
Oren Weimann},
title = {On Two Measures of Distance Between Fully-Labelled Trees},
booktitle = {31st Annual Symposium on Combinatorial Pattern Matching, {CPM} 2020,
June 17-19, 2020, Copenhagen, Denmark},
series = {LIPIcs},
volume = {161},
pages = {6:1--6:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.CPM.2020.6},
doi = {10.4230/LIPICS.CPM.2020.6},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cpm/0001BG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lata/BonizzoniFZZ20,
author = {Paola Bonizzoni and
Clelia De Felice and
Rocco Zaccagnino and
Rosalba Zizza},
editor = {Alberto Leporati and
Carlos Mart{\'{\i}}n{-}Vide and
Dana Shapira and
Claudio Zandron},
title = {Lyndon Words versus Inverse Lyndon Words: Queries on Suffixes and
Bordered Words},
booktitle = {Language and Automata Theory and Applications - 14th International
Conference, {LATA} 2020, Milan, Italy, March 4-6, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12038},
pages = {385--396},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-40608-0\_27},
doi = {10.1007/978-3-030-40608-0\_27},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lata/BonizzoniFZZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-05600,
author = {Giulia Bernardini and
Paola Bonizzoni and
Pawel Gawrychowski},
title = {On Two Measures of Distance between Fully-Labelled Trees},
journal = {CoRR},
volume = {abs/2002.05600},
year = {2020},
url = {https://arxiv.org/abs/2002.05600},
eprinttype = {arXiv},
eprint = {2002.05600},
timestamp = {Fri, 14 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-05600.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-05644,
author = {Giulia Bernardini and
Paola Bonizzoni and
Pawel Gawrychowski},
title = {Incomplete Directed Perfect Phylogeny in Linear Time},
journal = {CoRR},
volume = {abs/2010.05644},
year = {2020},
url = {https://arxiv.org/abs/2010.05644},
eprinttype = {arXiv},
eprint = {2010.05644},
timestamp = {Tue, 20 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-05644.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniVPPR19,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {Multithread Multistring Burrows-Wheeler Transform and Longest Common
Prefix Array},
journal = {J. Comput. Biol.},
volume = {26},
number = {9},
pages = {948--961},
year = {2019},
url = {https://doi.org/10.1089/cmb.2018.0230},
doi = {10.1089/CMB.2018.0230},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/RizziBPPPVB19,
author = {Raffaella Rizzi and
Stefano Beretta and
Murray Patterson and
Yuri Pirola and
Marco Previtali and
Gianluca Della Vedova and
Paola Bonizzoni},
title = {Overlap graphs and de Bruijn graphs: data structures for de novo genome
assembly in the big data era},
journal = {Quant. Biol.},
volume = {7},
number = {4},
pages = {278--292},
year = {2019},
url = {https://doi.org/10.1007/s40484-019-0181-x},
doi = {10.1007/S40484-019-0181-X},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/quanbio/RizziBPPPVB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonizzoniCVS19,
author = {Paola Bonizzoni and
Simone Ciccolella and
Gianluca Della Vedova and
Mauricio Soto Gomez},
title = {Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies?
An ILP-Based Comparative Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {5},
pages = {1410--1423},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2018.2865729},
doi = {10.1109/TCBB.2018.2865729},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniCVS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CiccolellaPBV19,
author = {Simone Ciccolella and
Murray D. Patterson and
Paola Bonizzoni and
Gianluca Della Vedova},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Effective Clustering for Single Cell Sequencing Cancer Data},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {437--446},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3342149},
doi = {10.1145/3307339.3342149},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/CiccolellaPBV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/0001BVP19,
author = {Giulia Bernardini and
Paola Bonizzoni and
Gianluca Della Vedova and
Murray Patterson},
editor = {Nadia Pisanti and
Solon P. Pissis},
title = {A Rearrangement Distance for Fully-Labelled Trees},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching, {CPM} 2019,
June 18-20, 2019, Pisa, Italy},
series = {LIPIcs},
volume = {128},
pages = {28:1--28:15},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.CPM.2019.28},
doi = {10.4230/LIPICS.CPM.2019.28},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cpm/0001BVP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-01321,
author = {Giulia Bernardini and
Paola Bonizzoni and
Gianluca Della Vedova and
Murray Patterson},
title = {A rearrangement distance for fully-labelled trees},
journal = {CoRR},
volume = {abs/1904.01321},
year = {2019},
url = {http://arxiv.org/abs/1904.01321},
eprinttype = {arXiv},
eprint = {1904.01321},
timestamp = {Thu, 02 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-01321.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-01851,
author = {Paola Bonizzoni and
Clelia De Felice and
Rocco Zaccagnino and
Rosalba Zizza},
title = {Lyndon words versus inverse Lyndon words: queries on suffixes and
bordered words},
journal = {CoRR},
volume = {abs/1911.01851},
year = {2019},
url = {http://arxiv.org/abs/1911.01851},
eprinttype = {arXiv},
eprint = {1911.01851},
timestamp = {Mon, 11 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-01851.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aam/BonizzoniFZZ18,
author = {Paola Bonizzoni and
Clelia De Felice and
Rocco Zaccagnino and
Rosalba Zizza},
title = {Inverse Lyndon words and inverse Lyndon factorizations of words},
journal = {Adv. Appl. Math.},
volume = {101},
pages = {281--319},
year = {2018},
url = {https://doi.org/10.1016/j.aam.2018.08.005},
doi = {10.1016/J.AAM.2018.08.005},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aam/BonizzoniFZZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BerettaPZVB18,
author = {Stefano Beretta and
Murray Patterson and
Simone Zaccaria and
Gianluca Della Vedova and
Paola Bonizzoni},
title = {HapCHAT: adaptive haplotype assembly for efficiently leveraging high
coverage in long reads},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {252:1--252:19},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2253-8},
doi = {10.1186/S12859-018-2253-8},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BerettaPZVB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DentiRBVPB18,
author = {Luca Denti and
Raffaella Rizzi and
Stefano Beretta and
Gianluca Della Vedova and
Marco Previtali and
Paola Bonizzoni},
title = {{ASGAL:} aligning RNA-Seq data to a splicing graph to detect novel
alternative splicing events},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {444:1--444:21},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2436-3},
doi = {10.1186/S12859-018-2436-3},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DentiRBVPB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cie/BonizzoniVNPPR18,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Serena Nicosia and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
editor = {Florin Manea and
Russell G. Miller and
Dirk Nowotka},
title = {Divide and Conquer Computation of the Multi-string {BWT} and {LCP}
Array},
booktitle = {Sailing Routes in the World of Computation - 14th Conference on Computability
in Europe, CiE 2018, Kiel, Germany, July 30 - August 3, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10936},
pages = {107--117},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-94418-0\_11},
doi = {10.1007/978-3-319-94418-0\_11},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cie/BonizzoniVNPPR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/CiccolellaGPVHB18,
author = {Simone Ciccolella and
Mauricio Soto Gomez and
Murray Patterson and
Gianluca Della Vedova and
Iman Hajirasouliha and
Paola Bonizzoni},
title = {gpps: an ILP-based approach for inferring cancer progression with
mutation losses from single cell data},
booktitle = {8th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2018, Las Vegas, NV, USA, October 18-20,
2018},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICCABS.2018.8542058},
doi = {10.1109/ICCABS.2018.8542058},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/CiccolellaGPVHB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/BonizzoniVPPR17,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {An External-Memory Algorithm for String Graph Construction},
journal = {Algorithmica},
volume = {78},
number = {2},
pages = {394--424},
year = {2017},
url = {https://doi.org/10.1007/s00453-016-0165-4},
doi = {10.1007/S00453-016-0165-4},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniVPPR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/BonizzoniCVRT17,
author = {Paola Bonizzoni and
Anna Paola Carrieri and
Gianluca Della Vedova and
Raffaella Rizzi and
Gabriella Trucco},
title = {Species-Driven Persistent Phylogeny},
journal = {Fundam. Informaticae},
volume = {154},
number = {1-4},
pages = {47--63},
year = {2017},
url = {https://doi.org/10.3233/FI-2017-1552},
doi = {10.3233/FI-2017-1552},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fuin/BonizzoniCVRT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniVPPR17,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {{FSG:} Fast String Graph Construction for De Novo Assembly},
journal = {J. Comput. Biol.},
volume = {24},
number = {10},
pages = {953--968},
year = {2017},
url = {https://doi.org/10.1089/cmb.2017.0089},
doi = {10.1089/CMB.2017.0089},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniCVRT17,
author = {Paola Bonizzoni and
Anna Paola Carrieri and
Gianluca Della Vedova and
Raffaella Rizzi and
Gabriella Trucco},
title = {A colored graph approach to perfect phylogeny with persistent characters},
journal = {Theor. Comput. Sci.},
volume = {658},
pages = {60--73},
year = {2017},
url = {https://doi.org/10.1016/j.tcs.2016.08.015},
doi = {10.1016/J.TCS.2016.08.015},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniCVRT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/0001BDPR17,
author = {Stefano Beretta and
Paola Bonizzoni and
Luca Denti and
Marco Previtali and
Raffaella Rizzi},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern
Matching to a Hypertext},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {49--61},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_3},
doi = {10.1007/978-3-319-58163-7\_3},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/0001BDPR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BonizzoniCVS17,
author = {Paola Bonizzoni and
Simone Ciccolella and
Gianluca Della Vedova and
Mauricio Soto Gomez},
editor = {Nurit Haspel and
Lenore J. Cowen and
Amarda Shehu and
Tamer Kahveci and
Giuseppe Pozzi},
title = {Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via
{ILP}},
booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2017, Boston,
MA, USA, August 20-23, 2017},
pages = {1--10},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3107411.3107441},
doi = {10.1145/3107411.3107441},
timestamp = {Wed, 16 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BonizzoniCVS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVPPR17,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {Computing the {BWT} and {LCP} array of a Set of Strings in External
Memory},
journal = {CoRR},
volume = {abs/1705.07756},
year = {2017},
url = {http://arxiv.org/abs/1705.07756},
eprinttype = {arXiv},
eprint = {1705.07756},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniFZZ17,
author = {Paola Bonizzoni and
Clelia De Felice and
Rocco Zaccagnino and
Rosalba Zizza},
title = {Inverse Lyndon words and Inverse Lyndon factorizations of words},
journal = {CoRR},
volume = {abs/1705.10277},
year = {2017},
url = {http://arxiv.org/abs/1705.10277},
eprinttype = {arXiv},
eprint = {1705.10277},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BonizzoniFZZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PirolaZDKPB16,
author = {Yuri Pirola and
Simone Zaccaria and
Riccardo Dondi and
Gunnar W. Klau and
Nadia Pisanti and
Paola Bonizzoni},
title = {HapCol: accurate and memory-efficient haplotype assembly from long
reads},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1610--1617},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv495},
doi = {10.1093/BIOINFORMATICS/BTV495},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PirolaZDKPB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computability/BrattkaBBM16,
author = {Vasco Brattka and
Paola Bonizzoni and
Olivier Bournez and
Elvira Mayordomo},
title = {Editorial},
journal = {Comput.},
volume = {5},
number = {1},
pages = {1},
year = {2016},
url = {https://doi.org/10.3233/COM-160051},
doi = {10.3233/COM-160051},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/computability/BrattkaBBM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniVPPR16,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {{LSG:} An External-Memory Tool to Compute String Graphs for Next-Generation
Sequencing Data Assembly},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {137--149},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0172},
doi = {10.1089/CMB.2015.0172},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniDKPPZ16,
author = {Paola Bonizzoni and
Riccardo Dondi and
Gunnar W. Klau and
Yuri Pirola and
Nadia Pisanti and
Simone Zaccaria},
title = {On the Minimum Error Correction Problem for Haplotype Assembly in
Diploid and Polyploid Genomes},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {718--736},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0220},
doi = {10.1089/CMB.2015.0220},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniDKPPZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/BonizzoniVPPR16,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
editor = {Anu G. Bourgeois and
Pavel Skums and
Xiang Wan and
Alex Zelikovsky},
title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads
Data},
booktitle = {Bioinformatics Research and Applications - 12th International Symposium,
{ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9683},
pages = {27--39},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38782-6\_3},
doi = {10.1007/978-3-319-38782-6\_3},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/BonizzoniVPPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVPPR16,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads
Data},
journal = {CoRR},
volume = {abs/1604.03587},
year = {2016},
url = {http://arxiv.org/abs/1604.03587},
eprinttype = {arXiv},
eprint = {1604.03587},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVNPR16,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Serena Nicosia and
Marco Previtali and
Raffaella Rizzi},
title = {A New Lightweight Algorithm to compute the {BWT} and the {LCP} array
of a Set of Strings},
journal = {CoRR},
volume = {abs/1607.08342},
year = {2016},
url = {http://arxiv.org/abs/1607.08342},
eprinttype = {arXiv},
eprint = {1607.08342},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BonizzoniVNPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVT16,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Gabriella Trucco},
title = {Solving the Persistent Phylogeny Problem in polynomial time},
journal = {CoRR},
volume = {abs/1611.01017},
year = {2016},
url = {http://arxiv.org/abs/1611.01017},
eprinttype = {arXiv},
eprint = {1611.01017},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BonizzoniVT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/BonizzoniDMZ15,
author = {Paola Bonizzoni and
Riccardo Dondi and
Giancarlo Mauri and
Italo Zoppis},
title = {Restricted and Swap Common Superstring: {A} Multivariate Algorithmic
Perspective},
journal = {Algorithmica},
volume = {72},
number = {4},
pages = {914--939},
year = {2015},
url = {https://doi.org/10.1007/s00453-014-9882-8},
doi = {10.1007/S00453-014-9882-8},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniDMZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cj/BeerenwinkelBBD15,
author = {Niko Beerenwinkel and
Stefano Beretta and
Paola Bonizzoni and
Riccardo Dondi and
Yuri Pirola},
title = {Covering Pairs in Directed Acyclic Graphs},
journal = {Comput. J.},
volume = {58},
number = {7},
pages = {1673--1686},
year = {2015},
url = {https://doi.org/10.1093/comjnl/bxu116},
doi = {10.1093/COMJNL/BXU116},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cj/BeerenwinkelBBD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iandc/BonizzoniJ15,
author = {Paola Bonizzoni and
Natasa Jonoska},
title = {Existence of constants in regular splicing languages},
journal = {Inf. Comput.},
volume = {242},
pages = {340--353},
year = {2015},
url = {https://doi.org/10.1016/j.ic.2015.04.001},
doi = {10.1016/J.IC.2015.04.001},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/iandc/BonizzoniJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcst/BatiniBCDPS15,
author = {Carlo Batini and
Paola Bonizzoni and
Marco Comerio and
Riccardo Dondi and
Yuri Pirola and
Francesco Salandra},
title = {A Clustering Algorithm for Planning the Integration Process of a Large
Number of Conceptual Schemas},
journal = {J. Comput. Sci. Technol.},
volume = {30},
number = {1},
pages = {214--224},
year = {2015},
url = {https://doi.org/10.1007/s11390-015-1514-5},
doi = {10.1007/S11390-015-1514-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcst/BatiniBCDPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BonizzoniDKPPZ15,
author = {Paola Bonizzoni and
Riccardo Dondi and
Gunnar W. Klau and
Yuri Pirola and
Nadia Pisanti and
Simone Zaccaria},
editor = {Ferdinando Cicalese and
Ely Porat and
Ugo Vaccaro},
title = {On the Fixed Parameter Tractability and Approximability of the Minimum
Error Correction Problem},
booktitle = {Combinatorial Pattern Matching - 26th Annual Symposium, {CPM} 2015,
Ischia Island, Italy, June 29 - July 1, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9133},
pages = {100--113},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-19929-0\_9},
doi = {10.1007/978-3-319-19929-0\_9},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BonizzoniDKPPZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BoassonBFFFZZ15,
author = {Luc Boasson and
Paola Bonizzoni and
Clelia De Felice and
Isabelle Fagnot and
Gabriele Fici and
Rocco Zaccagnino and
Rosalba Zizza},
title = {Splicing Systems from Past to Future: Old and New Challenges},
journal = {CoRR},
volume = {abs/1510.01574},
year = {2015},
url = {http://arxiv.org/abs/1510.01574},
eprinttype = {arXiv},
eprint = {1510.01574},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BoassonBFFFZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Alonso-AlemanyBBBNV14,
author = {Daniel Alonso{-}Alemany and
Aur{\'{e}}lien Barr{\'{e}} and
Stefano Beretta and
Paola Bonizzoni and
Macha Nikolski and
Gabriel Valiente},
title = {Further Steps in {TANGO:} improved taxonomic assignment in metagenomics},
journal = {Bioinform.},
volume = {30},
number = {1},
pages = {17--23},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt256},
doi = {10.1093/BIOINFORMATICS/BTT256},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Alonso-AlemanyBBBNV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BerettaBVPR14,
author = {Stefano Beretta and
Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Raffaella Rizzi},
title = {Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform
Graphs},
journal = {J. Comput. Biol.},
volume = {21},
number = {1},
pages = {16--40},
year = {2014},
url = {https://doi.org/10.1089/cmb.2013.0112},
doi = {10.1089/CMB.2013.0112},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BerettaBVPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BlinBDRS14,
author = {Guillaume Blin and
Paola Bonizzoni and
Riccardo Dondi and
Romeo Rizzi and
Florian Sikora},
title = {Complexity insights of the Minimum Duplication problem},
journal = {Theor. Comput. Sci.},
volume = {530},
pages = {66--79},
year = {2014},
url = {https://doi.org/10.1016/j.tcs.2014.02.025},
doi = {10.1016/J.TCS.2014.02.025},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BlinBDRS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/BoassonBFFFZZ14,
author = {Luc Boasson and
Paola Bonizzoni and
Clelia De Felice and
Isabelle Fagnot and
Gabriele Fici and
Rocco Zaccagnino and
Rosalba Zizza},
editor = {Gheorghe Paun and
Grzegorz Rozenberg and
Arto Salomaa},
title = {Splicing Systems from Past to Future: Old and New Challenges},
booktitle = {Discrete Mathematics and Computer Science. In Memoriam Alexandru Mateescu
{(1952-2005)}},
pages = {51--76},
publisher = {The Publishing House of the Romanian Academy},
year = {2014},
timestamp = {Fri, 23 Jan 2015 14:35:08 +0100},
biburl = {https://dblp.org/rec/conf/birthday/BoassonBFFFZZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lata/BeerenwinkelBBDP14,
author = {Niko Beerenwinkel and
Stefano Beretta and
Paola Bonizzoni and
Riccardo Dondi and
Yuri Pirola},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Jos{\'{e}} Luis Sierra{-}Rodr{\'{\i}}guez and
Bianca Truthe},
title = {Covering Pairs in Directed Acyclic Graphs},
booktitle = {Language and Automata Theory and Applications - 8th International
Conference, {LATA} 2014, Madrid, Spain, March 10-14, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8370},
pages = {126--137},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-04921-2\_10},
doi = {10.1007/978-3-319-04921-2\_10},
timestamp = {Sun, 02 Oct 2022 16:11:11 +0200},
biburl = {https://dblp.org/rec/conf/lata/BeerenwinkelBBDP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniVPPR14,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Constructing String Graphs in External Memory},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {311--325},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_23},
doi = {10.1007/978-3-662-44753-6\_23},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVPPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/ncs/BonizzoniCVDP14,
author = {Paola Bonizzoni and
Anna Paola Carrieri and
Gianluca Della Vedova and
Riccardo Dondi and
Teresa M. Przytycka},
editor = {Natasa Jonoska and
Masahico Saito},
title = {When and How the Perfect Phylogeny Model Explains Evolution},
booktitle = {Discrete and Topological Models in Molecular Biology},
series = {Natural Computing Series},
pages = {67--83},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-642-40193-0\_4},
doi = {10.1007/978-3-642-40193-0\_4},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/ncs/BonizzoniCVDP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniCVT14,
author = {Paola Bonizzoni and
Anna Paola Carrieri and
Gianluca Della Vedova and
Gabriella Trucco},
title = {Algorithms for the Constrained Perfect Phylogeny with Persistent Characters},
journal = {CoRR},
volume = {abs/1405.7497},
year = {2014},
url = {http://arxiv.org/abs/1405.7497},
eprinttype = {arXiv},
eprint = {1405.7497},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BonizzoniCVT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVPPR14,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {Constructing String Graphs in External Memory},
journal = {CoRR},
volume = {abs/1405.7520},
year = {2014},
url = {http://arxiv.org/abs/1405.7520},
eprinttype = {arXiv},
eprint = {1405.7520},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithms/BonizzoniDP13,
author = {Paola Bonizzoni and
Riccardo Dondi and
Yuri Pirola},
title = {Maximum Disjoint Paths on Edge-Colored Graphs: Approximability and
Tractability},
journal = {Algorithms},
volume = {6},
number = {1},
pages = {1--11},
year = {2013},
url = {https://doi.org/10.3390/a6010001},
doi = {10.3390/A6010001},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithms/BonizzoniDP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jco/BonizzoniVDP13,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola},
title = {Parameterized complexity of k-anonymity: hardness and tractability},
journal = {J. Comb. Optim.},
volume = {26},
number = {1},
pages = {19--43},
year = {2013},
url = {https://doi.org/10.1007/s10878-011-9428-9},
doi = {10.1007/S10878-011-9428-9},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jco/BonizzoniVDP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PirolaVBSB13,
author = {Yuri Pirola and
Gianluca Della Vedova and
Paola Bonizzoni and
Alessandra Stella and
Filippo Biscarini},
editor = {Jing Gao},
title = {Haplotype-based prediction of gene alleles using pedigrees and {SNP}
genotypes},
booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
2013},
pages = {33},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2506583.2506592},
doi = {10.1145/2506583.2506592},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/PirolaVBSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cie/2013,
editor = {Paola Bonizzoni and
Vasco Brattka and
Benedikt L{\"{o}}we},
title = {The Nature of Computation. Logic, Algorithms, Applications - 9th Conference
on Computability in Europe, CiE 2013, Milan, Italy, July 1-5, 2013.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7921},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39053-1},
doi = {10.1007/978-3-642-39053-1},
isbn = {978-3-642-39052-4},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cie/2013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BeerenwinkelBBDP13,
author = {Niko Beerenwinkel and
Stefano Beretta and
Paola Bonizzoni and
Riccardo Dondi and
Yuri Pirola},
title = {Covering Pairs in Directed Acyclic Graphs},
journal = {CoRR},
volume = {abs/1310.5037},
year = {2013},
url = {http://arxiv.org/abs/1310.5037},
eprinttype = {arXiv},
eprint = {1310.5037},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BeerenwinkelBBDP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PirolaRPPVB12,
author = {Yuri Pirola and
Raffaella Rizzi and
Ernesto Picardi and
Graziano Pesole and
Gianluca Della Vedova and
Paola Bonizzoni},
title = {PIntron: a fast method for detecting the gene structure due to alternative
splicing via maximal pairings of a pattern and a text},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-5}},
pages = {S2},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S5-S2},
doi = {10.1186/1471-2105-13-S5-S2},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PirolaRPPVB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computability/BrattkaBCLM12,
author = {Vasco Brattka and
Paola Bonizzoni and
S. Barry Cooper and
Benedikt L{\"{o}}we and
Elvira Mayordomo},
title = {Editorial},
journal = {Comput.},
volume = {1},
number = {1},
pages = {1--2},
year = {2012},
url = {https://doi.org/10.3233/COM-2012-007},
doi = {10.3233/COM-2012-007},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/computability/BrattkaBCLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/BlinBDS12,
author = {Guillaume Blin and
Paola Bonizzoni and
Riccardo Dondi and
Florian Sikora},
title = {On the parameterized complexity of the repetition free longest common
subsequence problem},
journal = {Inf. Process. Lett.},
volume = {112},
number = {7},
pages = {272--276},
year = {2012},
url = {https://doi.org/10.1016/j.ipl.2011.12.009},
doi = {10.1016/J.IPL.2011.12.009},
timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipl/BlinBDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PirolaBJ12,
author = {Yuri Pirola and
Paola Bonizzoni and
Tao Jiang},
title = {An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations
and Mutations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {12--25},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.51},
doi = {10.1109/TCBB.2011.51},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PirolaBJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PirolaVBSB12,
author = {Yuri Pirola and
Gianluca Della Vedova and
Stefano Biffani and
Alessandra Stella and
Paola Bonizzoni},
title = {A Fast and Practical Approach to Genotype Phasing and Imputation on
a Pedigree with Erroneous and Incomplete Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1582--1594},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.100},
doi = {10.1109/TCBB.2012.100},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PirolaVBSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniVD12,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
title = {A randomized {PTAS} for the minimum Consensus Clustering with a fixed
number of clusters},
journal = {Theor. Comput. Sci.},
volume = {429},
pages = {36--45},
year = {2012},
url = {https://doi.org/10.1016/j.tcs.2011.12.022},
doi = {10.1016/J.TCS.2011.12.022},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniBDT12,
author = {Paola Bonizzoni and
Chiara Braghin and
Riccardo Dondi and
Gabriella Trucco},
title = {The binary perfect phylogeny with persistent characters},
journal = {Theor. Comput. Sci.},
volume = {454},
pages = {51--63},
year = {2012},
url = {https://doi.org/10.1016/j.tcs.2012.05.035},
doi = {10.1016/J.TCS.2012.05.035},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniBDT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/BerettaBRV12,
author = {Stefano Beretta and
Paola Bonizzoni and
Raffaella Rizzi and
Gianluca Della Vedova},
title = {Reconstructing isoform graphs from RNA-Seq data},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBM.2012.6392734},
doi = {10.1109/BIBM.2012.6392734},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/BerettaBRV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/PirolaVBSB12,
author = {Yuri Pirola and
Gianluca Della Vedova and
Stefano Biffani and
Alessandra Stella and
Paola Bonizzoni},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {A fast and practical approach to genotype phasing and imputation on
a pedigree with erroneous and incomplete information},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182643},
doi = {10.1109/ICCABS.2012.6182643},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/PirolaVBSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwpec/BonizzoniDMZ12,
author = {Paola Bonizzoni and
Riccardo Dondi and
Giancarlo Mauri and
Italo Zoppis},
editor = {Dimitrios M. Thilikos and
Gerhard J. Woeginger},
title = {Restricted and Swap Common Superstring: {A} Parameterized View},
booktitle = {Parameterized and Exact Computation - 7th International Symposium,
{IPEC} 2012, Ljubljana, Slovenia, September 12-14, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7535},
pages = {49--60},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33293-7\_7},
doi = {10.1007/978-3-642-33293-7\_7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwpec/BonizzoniDMZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sofsem/BlinBDRS12,
author = {Guillaume Blin and
Paola Bonizzoni and
Riccardo Dondi and
Romeo Rizzi and
Florian Sikora},
editor = {M{\'{a}}ria Bielikov{\'{a}} and
Gerhard Friedrich and
Georg Gottlob and
Stefan Katzenbeisser and
Gy{\"{o}}rgy Tur{\'{a}}n},
title = {Complexity Insights of the Minimum Duplication Problem},
booktitle = {{SOFSEM} 2012: Theory and Practice of Computer Science - 38th Conference
on Current Trends in Theory and Practice of Computer Science, {\v{S}}pindler{\r{u}}v
Ml{\'{y}}n, Czech Republic, January 21-27, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7147},
pages = {153--164},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-27660-6\_13},
doi = {10.1007/978-3-642-27660-6\_13},
timestamp = {Tue, 14 May 2019 10:00:44 +0200},
biburl = {https://dblp.org/rec/conf/sofsem/BlinBDRS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uc/Bonizzoni12,
author = {Paola Bonizzoni},
editor = {J{\'{e}}r{\^{o}}me Durand{-}Lose and
Natasa Jonoska},
title = {The Holy Grail: Finding the Genetic Bases of Phenotypic Characters},
booktitle = {Unconventional Computation and Natural Computation - 11th International
Conference, {UCNC} 2012, Orl{\'{e}}an, France, September 3-7,
2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7445},
pages = {1},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-32894-7\_1},
doi = {10.1007/978-3-642-32894-7\_1},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/uc/Bonizzoni12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1203-4732,
author = {Paola Bonizzoni and
Peter J. Cameron and
Gianluca Della Vedova and
Alberto Leporati and
Giancarlo Mauri},
title = {A Unifying Framework to Characterize the Power of a Language to Express
Relations},
journal = {CoRR},
volume = {abs/1203.4732},
year = {2012},
url = {http://arxiv.org/abs/1203.4732},
eprinttype = {arXiv},
eprint = {1203.4732},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1203-4732.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/BonizzoniFMM11,
author = {Paola Bonizzoni and
Claudio Ferretti and
Anthonath Roslin {Sagaya Mary} and
Giancarlo Mauri},
title = {Picture Languages Generated by Assembling Tiles},
journal = {Fundam. Informaticae},
volume = {110},
number = {1-4},
pages = {77--93},
year = {2011},
url = {https://doi.org/10.3233/FI-2011-529},
doi = {10.3233/FI-2011-529},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fuin/BonizzoniFMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jco/BonizzoniVD11,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
title = {Anonymizing binary and small tables is hard to approximate},
journal = {J. Comb. Optim.},
volume = {22},
number = {1},
pages = {97--119},
year = {2011},
url = {https://doi.org/10.1007/s10878-009-9277-y},
doi = {10.1007/S10878-009-9277-Y},
timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jco/BonizzoniVD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MartelliDBCDMFFLMMPPRRVZZCP11,
author = {Pier Luigi Martelli and
Mattia D'Antonio and
Paola Bonizzoni and
Tiziana Castrignan{\`{o}} and
Anna Maria D'Erchia and
Paolo D'Onorio De Meo and
Piero Fariselli and
Michele Finelli and
Flavio Licciulli and
Marina Mangiulli and
Flavio Mignone and
Giulio Pavesi and
Ernesto Picardi and
Raffaella Rizzi and
Ivan Rossi and
Alessio Valletti and
Andrea Zauli and
Federico Zambelli and
Rita Casadio and
Graziano Pesole},
title = {ASPicDB: a database of annotated transcript and protein variants generated
by alternative splicing},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {80--85},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1073},
doi = {10.1093/NAR/GKQ1073},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MartelliDBCDMFFLMMPPRRVZZCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dlt/BonizzoniJ11,
author = {Paola Bonizzoni and
Natasha Jonoska},
editor = {Giancarlo Mauri and
Alberto Leporati},
title = {Regular Splicing Languages Must Have a Constant},
booktitle = {Developments in Language Theory - 15th International Conference, {DLT}
2011, Milan, Italy, July 19-22, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6795},
pages = {82--92},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-22321-1\_8},
doi = {10.1007/978-3-642-22321-1\_8},
timestamp = {Sat, 09 Apr 2022 12:37:59 +0200},
biburl = {https://dblp.org/rec/conf/dlt/BonizzoniJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/Bonizzoni11,
author = {Paola Bonizzoni},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Invited: {A} novel perspective in algorithmic combinatorial methods
for phasing populations in a coalescent model},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {4},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729936},
doi = {10.1109/ICCABS.2011.5729936},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/Bonizzoni11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/BonizzoniVPR11,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Raffaella Rizzi},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {PIntron: {A} fast method for gene structure prediction via maximal
pairings of a pattern and a text},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {33--39},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729935},
doi = {10.1109/ICCABS.2011.5729935},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/BonizzoniVPR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1107-3724,
author = {Yuri Pirola and
Gianluca Della Vedova and
Stefano Biffani and
Alessandra Stella and
Paola Bonizzoni},
title = {Haplotype Inference on Pedigrees with Recombinations, Errors, and
Missing Genotypes via {SAT} solvers},
journal = {CoRR},
volume = {abs/1107.3724},
year = {2011},
url = {http://arxiv.org/abs/1107.3724},
eprinttype = {arXiv},
eprint = {1107.3724},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1107-3724.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1108-0047,
author = {Stefano Beretta and
Paola Bonizzoni and
Gianluca Della Vedova and
Raffaella Rizzi},
title = {Predicting Variants of Alternative Splicing from {NGS} data without
the Genome},
journal = {CoRR},
volume = {abs/1108.0047},
year = {2011},
url = {http://arxiv.org/abs/1108.0047},
eprinttype = {arXiv},
eprint = {1108.0047},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1108-0047.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1110-6739,
author = {Chiara Braghin and
Riccardo Dondi and
Gabriella Trucco and
Paola Bonizzoni},
title = {The Binary Perfect Phylogeny with Persistent characters},
journal = {CoRR},
volume = {abs/1110.6739},
year = {2011},
url = {http://arxiv.org/abs/1110.6739},
eprinttype = {arXiv},
eprint = {1110.6739},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1110-6739.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/BonizzoniVDM10,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Giancarlo Mauri},
title = {Fingerprint Clustering with Bounded Number of Missing Values},
journal = {Algorithmica},
volume = {58},
number = {2},
pages = {282--303},
year = {2010},
url = {https://doi.org/10.1007/s00453-008-9265-0},
doi = {10.1007/S00453-008-9265-0},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniVDM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/BonizzoniVDP10,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola},
title = {Variants of constrained longest common subsequence},
journal = {Inf. Process. Lett.},
volume = {110},
number = {20},
pages = {877--881},
year = {2010},
url = {https://doi.org/10.1016/j.ipl.2010.07.015},
doi = {10.1016/J.IPL.2010.07.015},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipl/BonizzoniVDP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/BonizzoniPRZ10,
author = {Paola Bonizzoni and
Gheorghe Paun and
Grzegorz Rozenberg and
Claudio Zandron},
title = {Preface},
journal = {Nat. Comput.},
volume = {9},
number = {2},
pages = {381--382},
year = {2010},
url = {https://doi.org/10.1007/s11047-009-9161-9},
doi = {10.1007/S11047-009-9161-9},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/BonizzoniPRZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/BonizzoniFFZ10,
author = {Paola Bonizzoni and
Clelia de Felice and
Gabriele Fici and
Rosalba Zizza},
title = {On the regularity of circular splicing languages: a survey and new
developments},
journal = {Nat. Comput.},
volume = {9},
number = {2},
pages = {397--420},
year = {2010},
url = {https://doi.org/10.1007/s11047-009-9155-7},
doi = {10.1007/S11047-009-9155-7},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/BonizzoniFFZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonizzoniVDPR10,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola and
Romeo Rizzi},
title = {Pure Parsimony Xor Haplotyping},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {7},
number = {4},
pages = {598--610},
year = {2010},
url = {https://doi.org/10.1109/TCBB.2010.52},
doi = {10.1109/TCBB.2010.52},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniVDPR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/Bonizzoni10,
author = {Paola Bonizzoni},
title = {Constants and label-equivalence: {A} decision procedure for reflexive
regular splicing languages},
journal = {Theor. Comput. Sci.},
volume = {411},
number = {6},
pages = {865--877},
year = {2010},
url = {https://doi.org/10.1016/j.tcs.2009.06.038},
doi = {10.1016/J.TCS.2009.06.038},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/Bonizzoni10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniFZ10,
author = {Paola Bonizzoni and
Clelia de Felice and
Rosalba Zizza},
title = {A characterization of (regular) circular languages generated by monotone
complete splicing systems},
journal = {Theor. Comput. Sci.},
volume = {411},
number = {48},
pages = {4149--4161},
year = {2010},
url = {https://doi.org/10.1016/j.tcs.2010.05.013},
doi = {10.1016/J.TCS.2010.05.013},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniFZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwoca/BonizzoniVDP10,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola},
editor = {Costas S. Iliopoulos and
William F. Smyth},
title = {Parameterized Complexity of \emph{k}-Anonymity: Hardness and Tractability},
booktitle = {Combinatorial Algorithms - 21st International Workshop, {IWOCA} 2010,
London, UK, July 26-28, 2010, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6460},
pages = {242--255},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-19222-7\_25},
doi = {10.1007/978-3-642-19222-7\_25},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwoca/BonizzoniVDP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PirolaBJ10,
author = {Yuri Pirola and
Paola Bonizzoni and
Tao Jiang},
editor = {Vincent Moulton and
Mona Singh},
title = {Haplotype Inference on Pedigrees with Recombinations and Mutations},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {148--161},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_13},
doi = {10.1007/978-3-642-15294-8\_13},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PirolaBJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1001-1210,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola and
Romeo Rizzi},
title = {Pure Parsimony Xor Haplotyping},
journal = {CoRR},
volume = {abs/1001.1210},
year = {2010},
url = {http://arxiv.org/abs/1001.1210},
eprinttype = {arXiv},
eprint = {1001.1210},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1001-1210.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniMPPPR09,
author = {Paola Bonizzoni and
Giancarlo Mauri and
Graziano Pesole and
Ernesto Picardi and
Yuri Pirola and
Raffaella Rizzi},
title = {Detecting Alternative Gene Structures from Spliced ESTs: {A} Computational
Approach},
journal = {J. Comput. Biol.},
volume = {16},
number = {1},
pages = {43--66},
year = {2009},
url = {https://doi.org/10.1089/cmb.2008.0028},
doi = {10.1089/CMB.2008.0028},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniMPPPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniCLS09,
author = {Paola Bonizzoni and
S. Barry Cooper and
Benedikt L{\"{o}}we and
Andrea Sorbi},
title = {Foreword},
journal = {Theor. Comput. Sci.},
volume = {410},
number = {4-5},
pages = {283--284},
year = {2009},
url = {https://doi.org/10.1016/j.tcs.2008.09.040},
doi = {10.1016/J.TCS.2008.09.040},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniCLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/BonizzoniL09,
author = {Paola Bonizzoni and
Remco Loos},
editor = {Anne Condon and
David Harel and
Joost N. Kok and
Arto Salomaa and
Erik Winfree},
title = {Finite Splicing: Generative Capacity, New Models and Complexity Aspects},
booktitle = {Algorithmic Bioprocesses},
series = {Natural Computing Series},
pages = {313--329},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-540-88869-7\_17},
doi = {10.1007/978-3-540-88869-7\_17},
timestamp = {Sun, 25 Jul 2021 11:52:09 +0200},
biburl = {https://dblp.org/rec/conf/birthday/BonizzoniL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fct/BonizzoniVD09,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
editor = {Miroslaw Kutylowski and
Witold Charatonik and
Maciej Gebala},
title = {The \emph{k}-Anonymity Problem Is Hard},
booktitle = {Fundamentals of Computation Theory, 17th International Symposium,
{FCT} 2009, Wroclaw, Poland, September 2-4, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5699},
pages = {26--37},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03409-1\_4},
doi = {10.1007/978-3-642-03409-1\_4},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/fct/BonizzoniVD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ictcs/BonizzoniVD09,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
editor = {Alessandra Cherubini and
Mario Coppo and
Giuseppe Persiano},
title = {A {PTAS} for the Minimum Consensus Clustering Problem with a Fixed
Number of Clusters},
booktitle = {Theoretical Computer Science, 11th Italian Conference, {ICTCS} 2009,
Cremona, Italy, September 28-30, 2009, Proceedings},
pages = {55--58},
year = {2009},
timestamp = {Tue, 28 May 2013 14:21:59 +0200},
biburl = {https://dblp.org/rec/conf/ictcs/BonizzoniVD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/BonizzoniVDPR09,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola and
Romeo Rizzi},
editor = {Ion I. Mandoiu and
Giri Narasimhan and
Yanqing Zhang},
title = {Pure Parsimony Xor Haplotyping},
booktitle = {Bioinformatics Research and Applications, 5th International Symposium,
{ISBRA} 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5542},
pages = {186--197},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-01551-9\_19},
doi = {10.1007/978-3-642-01551-9\_19},
timestamp = {Fri, 24 Mar 2023 16:31:04 +0100},
biburl = {https://dblp.org/rec/conf/isbra/BonizzoniVDPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lata/BonizzoniFMM09,
author = {Paola Bonizzoni and
Claudio Ferretti and
Anthonath Roslin {Sagaya Mary} and
Giancarlo Mauri},
editor = {Adrian{-}Horia Dediu and
Armand{-}Mihai Ionescu and
Carlos Mart{\'{\i}}n{-}Vide},
title = {Picture Languages Generated by Assembling Tiles},
booktitle = {Language and Automata Theory and Applications, Third International
Conference, {LATA} 2009, Tarragona, Spain, April 2-8, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5457},
pages = {224--235},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-00982-2\_19},
doi = {10.1007/978-3-642-00982-2\_19},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/lata/BonizzoniFMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniVDPR09,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola and
Raffaella Rizzi},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Minimum Factorization Agreement of Spliced ESTs},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {1--12},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_1},
doi = {10.1007/978-3-642-04241-6\_1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVDPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-0911-2320,
author = {Paola Bonizzoni and
Clelia de Felice and
Rosalba Zizza},
editor = {S. Barry Cooper and
Vincent Danos},
title = {Circular Languages Generated by Complete Splicing Systems and Pure
Unitary Languages},
booktitle = {Proceedings Fifth Workshop on Developments in Computational Models--Computational
Models From Nature, {DCM} 2009, Rhodes, Greece, 11th July 2009},
series = {{EPTCS}},
volume = {9},
pages = {22--31},
year = {2009},
url = {https://doi.org/10.4204/EPTCS.9.3},
doi = {10.4204/EPTCS.9.3},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0911-2320.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0907-1840,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
title = {A {PTAS} for the Minimum Consensus Clustering Problem with a Fixed
Number of Clusters},
journal = {CoRR},
volume = {abs/0907.1840},
year = {2009},
url = {http://arxiv.org/abs/0907.1840},
eprinttype = {arXiv},
eprint = {0907.1840},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0907-1840.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0910-3148,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola},
title = {Parameterized Complexity of the k-anonymity Problem},
journal = {CoRR},
volume = {abs/0910.3148},
year = {2009},
url = {http://arxiv.org/abs/0910.3148},
eprinttype = {arXiv},
eprint = {0910.3148},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0910-3148.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0912-0368,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola},
title = {Variants of Constrained Longest Common Subsequence},
journal = {CoRR},
volume = {abs/0912.0368},
year = {2009},
url = {http://arxiv.org/abs/0912.0368},
eprinttype = {arXiv},
eprint = {0912.0368},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0912-0368.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CastrignanoDACMDLMMPPRRBP08,
author = {Tiziana Castrignan{\`{o}} and
Mattia D'Antonio and
Anna Anselmo and
Danilo Carrabino and
A. D'Onorio De Meo and
Anna Maria D'Erchia and
Flavio Licciulli and
Marina Mangiulli and
Flavio Mignone and
Giulio Pavesi and
Ernesto Picardi and
Alberto Riva and
Raffaella Rizzi and
Paola Bonizzoni and
Graziano Pesole},
title = {ASPicDB: {A} database resource for alternative splicing analysis},
journal = {Bioinform.},
volume = {24},
number = {10},
pages = {1300--1304},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn113},
doi = {10.1093/BIOINFORMATICS/BTN113},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CastrignanoDACMDLMMPPRRBP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/BonizzoniVDJ08,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Tao Jiang},
title = {On the Approximation of Correlation Clustering and Consensus Clustering},
journal = {J. Comput. Syst. Sci.},
volume = {74},
number = {5},
pages = {671--696},
year = {2008},
url = {https://doi.org/10.1016/j.jcss.2007.06.024},
doi = {10.1016/J.JCSS.2007.06.024},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcss/BonizzoniVDJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/Bonizzoni07,
author = {Paola Bonizzoni},
title = {A Linear-Time Algorithm for the Perfect Phylogeny Haplotype Problem},
journal = {Algorithmica},
volume = {48},
number = {3},
pages = {267--285},
year = {2007},
url = {https://doi.org/10.1007/s00453-007-0094-3},
doi = {10.1007/S00453-007-0094-3},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/Bonizzoni07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonizzoniVDFRV07,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Guillaume Fertin and
Raffaella Rizzi and
St{\'{e}}phane Vialette},
title = {Exemplar Longest Common Subsequence},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {4},
number = {4},
pages = {535--543},
year = {2007},
url = {https://doi.org/10.1109/TCBB.2007.1066},
doi = {10.1109/TCBB.2007.1066},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniVDFRV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0707-0421,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
title = {Anonymizing Binary Tables is APX-hard},
journal = {CoRR},
volume = {abs/0707.0421},
year = {2007},
url = {http://arxiv.org/abs/0707.0421},
eprinttype = {arXiv},
eprint = {0707.0421},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0707-0421.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/BonizzoniFMZ06,
author = {Paola Bonizzoni and
Clelia de Felice and
Giancarlo Mauri and
Rosalba Zizza},
title = {Linear splicing and syntactic monoid},
journal = {Discret. Appl. Math.},
volume = {154},
number = {3},
pages = {452--470},
year = {2006},
url = {https://doi.org/10.1016/j.dam.2005.06.008},
doi = {10.1016/J.DAM.2005.06.008},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/BonizzoniFMZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CastrignanoRTMABP06,
author = {Tiziana Castrignan{\`{o}} and
Raffaella Rizzi and
Ivano Giuseppe Talamo and
Paolo D'Onorio De Meo and
Anna Anselmo and
Paola Bonizzoni and
Graziano Pesole},
title = {{ASPIC:} a web resource for alternative splicing prediction and transcript
isoforms characterization},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {440--443},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl324},
doi = {10.1093/NAR/GKL324},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CastrignanoRTMABP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BonizzoniVDM06,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Giancarlo Mauri},
editor = {Moshe Lewenstein and
Gabriel Valiente},
title = {Fingerprint Clustering with Bounded Number of Missing Values},
booktitle = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006,
Barcelona, Spain, July 5-7, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4009},
pages = {106--116},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11780441\_11},
doi = {10.1007/11780441\_11},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BonizzoniVDM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dlt/BonizzoniM06,
author = {Paola Bonizzoni and
Giancarlo Mauri},
editor = {Oscar H. Ibarra and
Zhe Dang},
title = {A Decision Procedure for Reflexive Regular Splicing Languages},
booktitle = {Developments in Language Theory, 10th International Conference, {DLT}
2006, Santa Barbara, CA, USA, June 26-29, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4036},
pages = {315--326},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11779148\_29},
doi = {10.1007/11779148\_29},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dlt/BonizzoniM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/BonizzoniVDFV06,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Guillaume Fertin and
St{\'{e}}phane Vialette},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Exemplar Longest Common Subsequence},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3992},
pages = {622--629},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758525\_85},
doi = {10.1007/11758525\_85},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/BonizzoniVDFV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BonizzoniRP05,
author = {Paola Bonizzoni and
Raffaella Rizzi and
Graziano Pesole},
title = {{ASPIC:} a novel method to predict the exon-intron structure of a
gene that is optimally compatible to a set of transcript sequences},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {244},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-244},
doi = {10.1186/1471-2105-6-244},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BonizzoniRP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/BonizzoniFMZ05,
author = {Paola Bonizzoni and
Clelia de Felice and
Giancarlo Mauri and
Rosalba Zizza},
title = {On the power of circular splicing},
journal = {Discret. Appl. Math.},
volume = {150},
number = {1-3},
pages = {51--66},
year = {2005},
url = {https://doi.org/10.1016/j.dam.2005.02.012},
doi = {10.1016/J.DAM.2005.02.012},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/BonizzoniFMZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/BonizzoniVDM05,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Lorenzo Mariani},
title = {Experimental analysis of a new algorithm for partial haplotype completion},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {1},
number = {4},
pages = {461--473},
year = {2005},
url = {https://doi.org/10.1504/IJBRA.2005.008448},
doi = {10.1504/IJBRA.2005.008448},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/BonizzoniVDM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniFZ05,
author = {Paola Bonizzoni and
Clelia de Felice and
Rosalba Zizza},
title = {The structure of reflexive regular splicing languages via Sch{\"{u}}tzenberger
constants},
journal = {Theor. Comput. Sci.},
volume = {334},
number = {1-3},
pages = {71--98},
year = {2005},
url = {https://doi.org/10.1016/j.tcs.2004.12.033},
doi = {10.1016/J.TCS.2004.12.033},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniFZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniM05,
author = {Paola Bonizzoni and
Giancarlo Mauri},
title = {Regular splicing languages and subclasses},
journal = {Theor. Comput. Sci.},
volume = {340},
number = {1},
pages = {349--363},
year = {2005},
url = {https://doi.org/10.1016/j.tcs.2005.03.035},
doi = {10.1016/J.TCS.2005.03.035},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniVD05,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
title = {Reconciling a gene tree to a species tree under the duplication cost
model},
journal = {Theor. Comput. Sci.},
volume = {347},
number = {1-2},
pages = {36--53},
year = {2005},
url = {https://doi.org/10.1016/j.tcs.2005.05.016},
doi = {10.1016/J.TCS.2005.05.016},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cie/BonizzoniFM05,
author = {Paola Bonizzoni and
Clelia de Felice and
Giancarlo Mauri},
editor = {S. Barry Cooper and
Benedikt L{\"{o}}we and
Leen Torenvliet},
title = {Recombinant {DNA} , Gene Splicing as Generative Devices of Formal
Languages},
booktitle = {New Computational Paradigms, First Conference on Computability in
Europe, CiE 2005, Amsterdam, The Netherlands, June 8-12, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3526},
pages = {65--67},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11494645\_8},
doi = {10.1007/11494645\_8},
timestamp = {Tue, 14 May 2019 10:00:41 +0200},
biburl = {https://dblp.org/rec/conf/cie/BonizzoniFM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/BonizzoniVDM05,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Lorenzo Mariani},
editor = {Vaidy S. Sunderam and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Experimental Analysis of a New Algorithm for Partial Haplotype Completion},
booktitle = {Computational Science - {ICCS} 2005, 5th International Conference,
Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3515},
pages = {952--959},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11428848\_121},
doi = {10.1007/11428848\_121},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/BonizzoniVDM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isaac/BonizzoniVDJ05,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Tao Jiang},
editor = {Xiaotie Deng and
Ding{-}Zhu Du},
title = {Correlation Clustering and Consensus Clustering},
booktitle = {Algorithms and Computation, 16th International Symposium, {ISAAC}
2005, Sanya, Hainan, China, December 19-21, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3827},
pages = {226--235},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11602613\_24},
doi = {10.1007/11602613\_24},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isaac/BonizzoniVDJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-cs-0511082,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
title = {Approximating Clustering of Fingerprint Vectors with Missing Values},
journal = {CoRR},
volume = {abs/cs/0511082},
year = {2005},
url = {http://arxiv.org/abs/cs/0511082},
eprinttype = {arXiv},
eprint = {cs/0511082},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-cs-0511082.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ita/BonizzoniFMZ04,
author = {Paola Bonizzoni and
Clelia de Felice and
Giancarlo Mauri and
Rosalba Zizza},
title = {Circular splicing and regularity},
journal = {{RAIRO} Theor. Informatics Appl.},
volume = {38},
number = {3},
pages = {189--228},
year = {2004},
url = {https://doi.org/10.1051/ita:2004010},
doi = {10.1051/ITA:2004010},
timestamp = {Mon, 25 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ita/BonizzoniFMZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcst/BonizzoniVJ04,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Tao Jiang},
title = {Foreword - Special Issue on Bioinformatics},
journal = {J. Comput. Sci. Technol.},
volume = {19},
number = {1},
pages = {1},
year = {2004},
url = {https://doi.org/10.1007/BF02944780},
doi = {10.1007/BF02944780},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcst/BonizzoniVJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcst/BonizzoniVDL03,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Jing Li},
title = {The Haplotyping Problem: An Overview of Computational Models and Solutions},
journal = {J. Comput. Sci. Technol.},
volume = {18},
number = {6},
pages = {675--688},
year = {2003},
url = {https://doi.org/10.1007/BF02945456},
doi = {10.1007/BF02945456},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcst/BonizzoniVDL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ciac/BonizzoniVD03,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi},
editor = {Rossella Petreschi and
Giuseppe Persiano and
Riccardo Silvestri},
title = {Reconciling Gene Trees to a Species Tree},
booktitle = {Algorithms and Complexity, 5th Italian Conference, {CIAC} 2003, Rome,
Italy, May 28-30, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2653},
pages = {120--131},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-44849-7\_18},
doi = {10.1007/3-540-44849-7\_18},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ciac/BonizzoniVD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dlt/BonizzoniFMZ03,
author = {Paola Bonizzoni and
Clelia de Felice and
Giancarlo Mauri and
Rosalba Zizza},
editor = {Zolt{\'{a}}n {\'{E}}sik and
Zolt{\'{a}}n F{\"{u}}l{\"{o}}p},
title = {Regular Languages Generated by Reflexive Finite Splicing Systems},
booktitle = {Developments in Language Theory, 7th International Conference, {DLT}
2003, Szeged, Hungary, July 7-11, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2710},
pages = {134--145},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-45007-6\_10},
doi = {10.1007/3-540-45007-6\_10},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dlt/BonizzoniFMZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniPR03,
author = {Paola Bonizzoni and
Graziano Pesole and
Raffaella Rizzi},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Method to Detect Gene Structure and Alternative Splice Sites by
Agreeing ESTs to a Genomic Sequence},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {63--77},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_6},
doi = {10.1007/978-3-540-39763-2\_6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonizzoniPR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dlt/BonizzoniFMZ02,
author = {Paola Bonizzoni and
Clelia de Felice and
Giancarlo Mauri and
Rosalba Zizza},
editor = {Masami Ito and
Masafumi Toyama},
title = {Decision Problems for Linear and Circular Splicing Systems},
booktitle = {Developments in Language Theory, 6th International Conference, {DLT}
2002, Kyoto, Japan, September 18-21, 2002, Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {2450},
pages = {78--92},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45005-X\_7},
doi = {10.1007/3-540-45005-X\_7},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dlt/BonizzoniFMZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/BonizzoniVM01,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Giancarlo Mauri},
title = {Experimenting an approximation algorithm for the {LCS}},
journal = {Discret. Appl. Math.},
volume = {110},
number = {1},
pages = {13--24},
year = {2001},
url = {https://doi.org/10.1016/S0166-218X(00)00300-0},
doi = {10.1016/S0166-218X(00)00300-0},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/BonizzoniVM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/BonizzoniFMZ01,
author = {Paola Bonizzoni and
Claudio Ferretti and
Giancarlo Mauri and
Rosalba Zizza},
title = {Separating some splicing models},
journal = {Inf. Process. Lett.},
volume = {79},
number = {6},
pages = {255--259},
year = {2001},
url = {https://doi.org/10.1016/S0020-0190(01)00139-9},
doi = {10.1016/S0020-0190(01)00139-9},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ipl/BonizzoniFMZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniV01,
author = {Paola Bonizzoni and
Gianluca Della Vedova},
title = {The complexity of multiple sequence alignment with SP-score that is
a metric},
journal = {Theor. Comput. Sci.},
volume = {259},
number = {1-2},
pages = {63--79},
year = {2001},
url = {https://doi.org/10.1016/S0304-3975(99)00324-2},
doi = {10.1016/S0304-3975(99)00324-2},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniM01,
author = {Paola Bonizzoni and
Ross M. McConnell},
title = {Nesting of prime substructures in k-ary relations},
journal = {Theor. Comput. Sci.},
volume = {259},
number = {1-2},
pages = {341--357},
year = {2001},
url = {https://doi.org/10.1016/S0304-3975(00)00017-7},
doi = {10.1016/S0304-3975(00)00017-7},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/ZandronMFB01,
author = {Claudio Zandron and
Giancarlo Mauri and
Claudio Ferretti and
Paola Bonizzoni},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Victor Mitrana},
title = {Splicing systems using merge and separate operations},
booktitle = {Where Mathematics, Computer Science, Linguistics and Biology Meet:
Essays in Honour of Gheorghe Paun},
pages = {435--446},
publisher = {Kluwer Academic Publishers},
year = {2001},
timestamp = {Fri, 09 Dec 2011 11:05:54 +0100},
biburl = {https://dblp.org/rec/conf/birthday/ZandronMFB01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/BaroneBVM01,
author = {Paolo Barone and
Paola Bonizzoni and
Gianluca Della Vedova and
Giancarlo Mauri},
editor = {Gary B. Lamont},
title = {An approximation algorithm for the shortest common supersequence problem:
an experimental analysis},
booktitle = {Proceedings of the 2001 {ACM} Symposium on Applied Computing (SAC),
March 11-14, 2001, Las Vegas, NV, {USA}},
pages = {56--60},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/372202.372275},
doi = {10.1145/372202.372275},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sac/BaroneBVM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/BonizzoniVM00,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Giancarlo Mauri},
title = {Approximating the Maximum Isomorphic Agreement Subtree is Hard},
journal = {Int. J. Found. Comput. Sci.},
volume = {11},
number = {4},
pages = {579--590},
year = {2000},
url = {https://doi.org/10.1142/S0129054100000363},
doi = {10.1142/S0129054100000363},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijfcs/BonizzoniVM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BonizzoniVM00,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Giancarlo Mauri},
editor = {Raffaele Giancarlo and
David Sankoff},
title = {Approximating the Maximum Isomorphic Agreement Subtree Is Hard},
booktitle = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000,
Montreal, Canada, June 21-23, 2000, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1848},
pages = {119--128},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/3-540-45123-4\_12},
doi = {10.1007/3-540-45123-4\_12},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BonizzoniVM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/BonizzoniFMZ00,
author = {Paola Bonizzoni and
Clelia de Felice and
Giancarlo Mauri and
Rosalba Zizza},
editor = {Anne Condon and
Grzegorz Rozenberg},
title = {{DNA} and Circular Splicing},
booktitle = {{DNA} Computing, 6th International Workshop on DNA-Based Computers,
{DNA} 2000, Leiden, The Netherlands, June 13-17, 2000, Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {2054},
pages = {117--129},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/3-540-44992-2\_9},
doi = {10.1007/3-540-44992-2\_9},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dna/BonizzoniFMZ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/BonizzoniV99,
author = {Paola Bonizzoni and
Gianluca Della Vedova},
title = {An Algorithm for the Modular Decomposition of Hypergraphs},
journal = {J. Algorithms},
volume = {32},
number = {2},
pages = {65--86},
year = {1999},
url = {https://doi.org/10.1006/jagm.1999.1016},
doi = {10.1006/JAGM.1999.1016},
timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jal/BonizzoniV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wg/BonizzoniV95,
author = {Paola Bonizzoni and
Gianluca Della Vedova},
editor = {Manfred Nagl},
title = {Modular Decomposition of Hypergraphs},
booktitle = {Graph-Theoretic Concepts in Computer Science, 21st International Workshop,
{WG} '95, Aachen, Germany, June 20-22, 1995, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1017},
pages = {303--317},
publisher = {Springer},
year = {1995},
url = {https://doi.org/10.1007/3-540-60618-1\_84},
doi = {10.1007/3-540-60618-1\_84},
timestamp = {Thu, 14 Oct 2021 10:32:32 +0200},
biburl = {https://dblp.org/rec/conf/wg/BonizzoniV95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/Bonizzoni94,
author = {Paola Bonizzoni},
title = {Primitive 2-structures with the (n-2)-Property},
journal = {Theor. Comput. Sci.},
volume = {132},
number = {2},
pages = {151--178},
year = {1994},
url = {https://doi.org/10.1016/0304-3975(94)90231-3},
doi = {10.1016/0304-3975(94)90231-3},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/Bonizzoni94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icalp/Bonizzoni94,
author = {Paola Bonizzoni},
editor = {Serge Abiteboul and
Eli Shamir},
title = {A Tight Lower Bound for Primitivity in k-Structures},
booktitle = {Automata, Languages and Programming, 21st International Colloquium,
ICALP94, Jerusalem, Israel, July 11-14, 1994, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {820},
pages = {556--567},
publisher = {Springer},
year = {1994},
url = {https://doi.org/10.1007/3-540-58201-0\_98},
doi = {10.1007/3-540-58201-0\_98},
timestamp = {Tue, 14 May 2019 10:00:44 +0200},
biburl = {https://dblp.org/rec/conf/icalp/Bonizzoni94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniM92,
author = {Paola Bonizzoni and
Giancarlo Mauri},
title = {On Automata on Infinite Trees},
journal = {Theor. Comput. Sci.},
volume = {93},
number = {2},
pages = {227--244},
year = {1992},
url = {https://doi.org/10.1016/0304-3975(92)90331-9},
doi = {10.1016/0304-3975(92)90331-9},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/BonizzoniM92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/el/treeauto1992/SaoudiB92,
author = {Ahmed Saoudi and
Paola Bonizzoni},
editor = {Maurice Nivat and
Andreas Podelski},
title = {Automata on infinite trees and rational control},
booktitle = {Tree Automata and Languages},
pages = {189--200},
publisher = {North-Holland},
year = {1992},
timestamp = {Mon, 05 Aug 2019 12:47:51 +0200},
biburl = {https://dblp.org/rec/books/el/treeauto1992/SaoudiB92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/el/treeauto1992/BonizzoniMPS92,
author = {Paola Bonizzoni and
Giancarlo Mauri and
Giovanni Pighizzini and
Nicoletta Sabadini},
editor = {Maurice Nivat and
Andreas Podelski},
title = {Recognizing sets of labelled acyclic graphs},
booktitle = {Tree Automata and Languages},
pages = {201--224},
publisher = {North-Holland},
year = {1992},
timestamp = {Mon, 05 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/el/treeauto1992/BonizzoniMPS92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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