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ORCIDBibTeX records: James Borneman
@article{DBLP:journals/corr/abs-2005-13645,
author = {Qi Fu and
Elizabeth Bent and
James Borneman and
Marek Chrobak and
Neal E. Young},
title = {Algorithmic approaches to selecting control clones in {DNA} array
hybridization experiments},
journal = {CoRR},
volume = {abs/2005.13645},
year = {2020},
url = {https://arxiv.org/abs/2005.13645},
eprinttype = {arXiv},
eprint = {2005.13645},
timestamp = {Wed, 03 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-13645.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanaseichukBJ14,
author = {Olga Tanaseichuk and
James Borneman and
Tao Jiang},
title = {Phylogeny-based classification of microbial communities},
journal = {Bioinform.},
volume = {30},
number = {4},
pages = {449--456},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt700},
doi = {10.1093/BIOINFORMATICS/BTT700},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanaseichukBJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangYCB14,
author = {Yu{-}Ting Huang and
Jiue{-}in Yang and
Marek Chrobak and
James Borneman},
title = {{PRISE2:} Software for designing sequence-selective {PCR} primers
and probes},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {317},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-317},
doi = {10.1186/1471-2105-15-317},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangYCB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sadm/ZhangCJB13,
author = {Zhanpan Zhang and
Xinping Cui and
Daniel R. Jeske and
James Borneman},
title = {Biclustering scatter plots using data depth measures},
journal = {Stat. Anal. Data Min.},
volume = {6},
number = {2},
pages = {102--115},
year = {2013},
url = {https://doi.org/10.1002/sam.11166},
doi = {10.1002/SAM.11166},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sadm/ZhangCJB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/TanaseichukBJ12,
author = {Olga Tanaseichuk and
James Borneman and
Tao Jiang},
title = {Separating metagenomic short reads into genomes via clustering},
journal = {Algorithms Mol. Biol.},
volume = {7},
pages = {27},
year = {2012},
url = {https://doi.org/10.1186/1748-7188-7-27},
doi = {10.1186/1748-7188-7-27},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/TanaseichukBJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TanaseichukBJ12,
author = {Olga Tanaseichuk and
James Borneman and
Tao Jiang},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {A Probabilistic Approach to Accurate Abundance-Based Binning of Metagenomic
Reads},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {404--416},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_32},
doi = {10.1007/978-3-642-33122-0\_32},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TanaseichukBJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RueggerVJB11,
author = {Paul M. Ruegger and
Gianluca Della Vedova and
Tao Jiang and
James Borneman},
title = {Improving Probe Set Selection for Microbial Community Analysis by
Leveraging Taxonomic Information of Training Sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {394},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-394},
doi = {10.1186/1471-2105-12-394},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RueggerVJB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TanaseichukBJ11,
author = {Olga Tanaseichuk and
James Borneman and
Tao Jiang},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Separating Metagenomic Short Reads into Genomes via Clustering - (Extended
Abstract)},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {298--313},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_25},
doi = {10.1007/978-3-642-23038-7\_25},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TanaseichukBJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/LiRBJ10,
author = {Wei Li and
Paul M. Ruegger and
James Borneman and
Tao Jiang},
title = {Polony Identification Using the {EM} Algorithm Based on a Gaussian
Mixture Model},
booktitle = {10th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2010, Philadelphia, Pennsylvania, USA, May 31-June 3 2010},
pages = {220--225},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBE.2010.43},
doi = {10.1109/BIBE.2010.43},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/LiRBJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dmin/ZhangCJLBB10,
author = {Zhanpan Zhang and
Xinping Cui and
Daniel R. Jeske and
Xiaoxiao Li and
Jonathan Braun and
James Borneman},
editor = {Robert Stahlbock and
Sven F. Crone and
Mahmoud Abou{-}Nasr and
Hamid R. Arabnia and
Nikolaos Kourentzes and
Philippe Lenca and
Wolfram{-}Manfred Lippe and
Gary M. Weiss},
title = {Clustering Scatter Plots Using Data Depth Measures},
booktitle = {Proceedings of The 2010 International Conference on Data Mining, {DMIN}
2010, July 12-15, 2010, Las Vegas, Nevada, {USA}},
pages = {327--333},
publisher = {{CSREA} Press},
year = {2010},
timestamp = {Tue, 07 Dec 2010 10:44:25 +0100},
biburl = {https://dblp.org/rec/conf/dmin/ZhangCJLBB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/FuBBCY07,
author = {Qi Fu and
Elizabeth Bent and
James Borneman and
Marek Chrobak and
Neal E. Young},
title = {Algorithmic Approaches to Selecting Control Clones in {DNA} Array
Hybridization Experiments},
journal = {J. Bioinform. Comput. Biol.},
volume = {5},
number = {4},
pages = {937--961},
year = {2007},
url = {https://doi.org/10.1142/S0219720007002977},
doi = {10.1142/S0219720007002977},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/FuBBCY07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/FuBBCY07,
author = {Qi Fu and
Elizabeth Bent and
James Borneman and
Marek Chrobak and
Neal E. Young},
editor = {David Sankoff and
Lusheng Wang and
Francis Y. L. Chin},
title = {Algorithmic Approaches to Selecting Control Clones in {DNA} Array
Hybridization Experiments},
booktitle = {Proceedings of 5th Asia-Pacific Bioinformatics Conference, {APBC}
2007, 15-17 January 2007, Hong Kong, China},
series = {Advances in Bioinformatics and Computational Biology},
volume = {5},
pages = {17--26},
publisher = {Imperial College Press},
year = {2007},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2007/apbc124a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/FuBBCY07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JampachaisriVBP05,
author = {Katechan Jampachaisri and
Lea Valinsky and
James Borneman and
S. James Press},
title = {Classification of oligonucleotide fingerprints: application for microbial
community and gene expression analyses},
journal = {Bioinform.},
volume = {21},
number = {14},
pages = {3122--3130},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti452},
doi = {10.1093/BIOINFORMATICS/BTI452},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JampachaisriVBP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/LiuBJ05,
author = {Zheng Liu and
James Borneman and
Tao Jiang},
title = {A software system for gene sequence database construction based on
fast approximate string matching},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {1},
number = {3},
pages = {273--291},
year = {2005},
url = {https://doi.org/10.1504/IJBRA.2005.007906},
doi = {10.1504/IJBRA.2005.007906},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/LiuBJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/LiuCBJ05,
author = {Zheng Liu and
Xin Chen and
James Borneman and
Tao Jiang},
editor = {Alberto Apostolico and
Maxime Crochemore and
Kunsoo Park},
title = {A Fast Algorithm for Approximate String Matching on Gene Sequences},
booktitle = {Combinatorial Pattern Matching, 16th Annual Symposium, {CPM} 2005,
Jeju Island, Korea, June 19-22, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3537},
pages = {79--90},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11496656\_8},
doi = {10.1007/11496656\_8},
timestamp = {Wed, 22 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cpm/LiuCBJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FigueroaBJ04,
author = {Andres Figueroa and
James Borneman and
Tao Jiang},
title = {Clustering Binary Fingerprint Vectors with Missing Values for {DNA}
Array Data Analysis},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {887--901},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.887},
doi = {10.1089/CMB.2004.11.887},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FigueroaBJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/FigueroaBJ03,
author = {Andres Figueroa and
James Borneman and
Tao Jiang},
title = {Clustering Binary Fingerprint Vectors with Missing Values for {DNA}
Array Data Analysis},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {38--47},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227302},
doi = {10.1109/CSB.2003.1227302},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/FigueroaBJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BornemanCVFJ01,
author = {James Borneman and
Marek Chrobak and
Gianluca Della Vedova and
Andres Figueroa and
Tao Jiang},
title = {Probe selection algorithms with applications in the analysis of microbial
communities},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {39--48},
year = {2001},
timestamp = {Thu, 31 Mar 2016 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/BornemanCVFJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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