BibTeX records: Søren Brunak

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@article{DBLP:journals/midm/MusePHB24,
  author       = {Victorine P. Muse and
                  Davide Placido and
                  Amalie Dahl Haue and
                  S{\o}ren Brunak},
  title        = {Seasonally adjusted laboratory reference intervals to improve the
                  performance of machine learning models for classification of cardiovascular
                  diseases},
  journal      = {{BMC} Medical Informatics Decis. Mak.},
  volume       = {24},
  number       = {1},
  pages        = {62},
  year         = {2024},
  url          = {https://doi.org/10.1186/s12911-024-02467-6},
  doi          = {10.1186/S12911-024-02467-6},
  timestamp    = {Wed, 13 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/midm/MusePHB24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HjaltelinCJB23,
  author       = {Jessica Xin Hjaltelin and
                  Hannah Currant and
                  Isabella Friis J{\o}rgensen and
                  S{\o}ren Brunak},
  title        = {Visualising disease trajectories from population-wide data},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1112113},
  doi          = {10.3389/FBINF.2023.1112113},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/HjaltelinCJB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/MuseABB23,
  author       = {Victorine P. Muse and
                  Alejandro Aguayo{-}Orozco and
                  Sedrah B. Balaganeshan and
                  S{\o}ren Brunak},
  title        = {Population-wide analysis of hospital laboratory tests to assess seasonal
                  variation and temporal reference interval modification},
  journal      = {Patterns},
  volume       = {4},
  number       = {8},
  pages        = {100778},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.patter.2023.100778},
  doi          = {10.1016/J.PATTER.2023.100778},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/patterns/MuseABB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LundgaardBSWVCR23,
  author       = {Agnete T. Lundgaard and
                  Fr{\'{e}}d{\'{e}}ric Burdet and
                  Troels Siggaard and
                  David Westergaard and
                  Danai Vagiaki and
                  Lisa Cantwell and
                  Timo R{\"{o}}der and
                  Dorte Vistisen and
                  Thomas Spars{\o} and
                  Giuseppe N. Giordano and
                  Mark Ibberson and
                  Karina Banasik and
                  S{\o}ren Brunak},
  title        = {{BALDR:} {A} Web-based platform for informed comparison and prioritization
                  of biomarker candidates for type 2 diabetes mellitus},
  journal      = {PLoS Comput. Biol.},
  volume       = {19},
  number       = {8},
  year         = {2023},
  url          = {https://doi.org/10.1371/journal.pcbi.1011403},
  doi          = {10.1371/JOURNAL.PCBI.1011403},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/LundgaardBSWVCR23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/MortensenB22,
  author       = {Laust Hvas Mortensen and
                  S{\o}ren Brunak},
  title        = {Reply to: Immortal time bias in the analysis of drug prescription
                  trajectories},
  journal      = {npj Digit. Medicine},
  volume       = {5},
  year         = {2022},
  url          = {https://doi.org/10.1038/s41746-022-00724-4},
  doi          = {10.1038/S41746-022-00724-4},
  timestamp    = {Sat, 13 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/MortensenB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/Thorsen-MeyerPK22,
  author       = {Hans{-}Christian Thorsen{-}Meyer and
                  Davide Placido and
                  Benjamin Skov Kaas{-}Hansen and
                  Anna P. Nielsen and
                  Theis Lange and
                  Annelaura B. Nielsen and
                  Palle Toft and
                  Jens Schierbeck and
                  Thomas Str{\o}m and
                  Piotr Chmura and
                  Marc Heimann and
                  Kirstine Belling and
                  Anders Perner and
                  S{\o}ren Brunak},
  title        = {Discrete-time survival analysis in the critically ill: a deep learning
                  approach using heterogeneous data},
  journal      = {npj Digit. Medicine},
  volume       = {5},
  year         = {2022},
  url          = {https://doi.org/10.1038/s41746-022-00679-6},
  doi          = {10.1038/S41746-022-00679-6},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/Thorsen-MeyerPK22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/Aguayo-OrozcoHJ21,
  author       = {Alejandro Aguayo{-}Orozco and
                  Amalie Dahl Haue and
                  Isabella Friis J{\o}rgensen and
                  David Westergaard and
                  Pope L. Moseley and
                  Laust Hvas Mortensen and
                  S{\o}ren Brunak},
  title        = {Optimizing drug selection from a prescription trajectory of one patient},
  journal      = {npj Digit. Medicine},
  volume       = {4},
  year         = {2021},
  url          = {https://doi.org/10.1038/s41746-021-00522-4},
  doi          = {10.1038/S41746-021-00522-4},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/Aguayo-OrozcoHJ21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/JorgensenB21,
  author       = {Isabella Friis J{\o}rgensen and
                  S{\o}ren Brunak},
  title        = {Time-ordered comorbidity correlations identify patients at risk of
                  mis- and overdiagnosis},
  journal      = {npj Digit. Medicine},
  volume       = {4},
  year         = {2021},
  url          = {https://doi.org/10.1038/s41746-021-00382-y},
  doi          = {10.1038/S41746-021-00382-Y},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/JorgensenB21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrunakCCGKKMW20,
  author       = {S{\o}ren Brunak and
                  Catherine Bjerre Collin and
                  Katharina Eva {\'{O}} Cathaoir and
                  Martin Golebiewski and
                  Marc Kirschner and
                  Ingrid Kockum and
                  Heike Moser and
                  Dagmar Waltemath},
  title        = {Towards standardization guidelines for in silico approaches in personalized
                  medicine},
  journal      = {J. Integr. Bioinform.},
  volume       = {17},
  number       = {2-3},
  year         = {2020},
  url          = {https://doi.org/10.1515/jib-2020-0006},
  doi          = {10.1515/JIB-2020-0006},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jib/BrunakCCGKKMW20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/EskildsenECABBH20,
  author       = {Nadine Kadi Eskildsen and
                  Robert Eriksson and
                  Sten B. Christensen and
                  Tamilla Stine Aghassipour and
                  Mikael Juul Bygs{\o} and
                  S{\o}ren Brunak and
                  Suzanne Lisbet Hansen},
  title        = {Implementation and comparison of two text mining methods with a standard
                  pharmacovigilance method for signal detection of medication errors},
  journal      = {{BMC} Medical Informatics Decis. Mak.},
  volume       = {20},
  number       = {1},
  pages        = {94},
  year         = {2020},
  url          = {https://doi.org/10.1186/s12911-020-1097-0},
  doi          = {10.1186/S12911-020-1097-0},
  timestamp    = {Sun, 06 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/midm/EskildsenECABBH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/RheinbayNAWSTHH20,
  author       = {Esther Rheinbay and
                  Morten Muhlig Nielsen and
                  Federico Abascal and
                  Jeremiah Wala and
                  Ofer Shapira and
                  Grace Tiao and
                  Henrik Hornsh{\o}j and
                  Julian M. Hess and
                  Randi Istrup Juul and
                  Ziao Lin and
                  Lars Feuerbach and
                  Radhakrishnan Sabarinathan and
                  Tobias Madsen and
                  Jaegil Kim and
                  Loris Mularoni and
                  Shimin Shuai and
                  Andr{\'{e}}s Lanz{\'{o}}s and
                  Carl Herrmann and
                  Yosef E. Maruvka and
                  Ciyue Shen and
                  Samirkumar B. Amin and
                  Pratiti Bandopadhayay and
                  Johanna Bertl and
                  Keith A. Boroevich and
                  John Busanovich and
                  Joana Carlevaro{-}Fita and
                  Dimple Chakravarty and
                  Calvin Wing Yiu Chan and
                  David Craft and
                  Priyanka Dhingra and
                  Klev Diamanti and
                  Nuno A. Fonseca and
                  Abel Gonzalez{-}Perez and
                  Qianyun Guo and
                  Mark P. Hamilton and
                  Nicholas J. Haradhvala and
                  Chen Hong and
                  Keren Isaev and
                  Todd A. Johnson and
                  Malene Juul and
                  Andr{\'{e}} Kahles and
                  Abdullah Kahraman and
                  Youngwook Kim and
                  Jan Komorowski and
                  Kiran Kumar and
                  Sushant Kumar and
                  Donghoon Lee and
                  Kjong{-}Van Lehmann and
                  Yilong Li and
                  Eric Minwei Liu and
                  Lucas Lochovsky and
                  Keunchil Park and
                  Oriol Pich and
                  Nicola D. Roberts and
                  Gordon Saksena and
                  Steven E. Schumacher and
                  Nikos Sidiropoulos and
                  Lina Sieverling and
                  Nasa Sinnott{-}Armstrong and
                  Chip Stewart and
                  David Tamborero and
                  Jose M. C. Tubio and
                  Husen M. Umer and
                  Liis Uusk{\"{u}}la{-}Reimand and
                  Claes Wadelius and
                  Lina Wadi and
                  Xiaotong Yao and
                  Cheng{-}Zhong Zhang and
                  Jing Zhang and
                  James E. Haber and
                  Asger Hobolth and
                  Marcin Imielinski and
                  Manolis Kellis and
                  Michael S. Lawrence and
                  Christian von Mering and
                  Hidewaki Nakagawa and
                  Benjamin J. Raphael and
                  Mark A. Rubin and
                  Chris Sander and
                  Lincoln D. Stein and
                  Joshua M. Stuart and
                  Tatsuhiko Tsunoda and
                  David A. Wheeler and
                  Rory Johnson and
                  J{\"{u}}ri Reimand and
                  Mark Gerstein and
                  Ekta Khurana and
                  Peter J. Campbell and
                  N{\'{u}}ria L{\'{o}}pez{-}Bigas and
                  Gary D. Bader and
                  Jonathan Barenboim and
                  Rameen Beroukhim and
                  S{\o}ren Brunak and
                  Ken Chen and
                  Jung Kyoon Choi and
                  Jordi Deu{-}Pons and
                  J. Lynn Fink and
                  Joan Frigola and
                  Carlo Gambacorti Passerini and
                  Dale W. Garsed and
                  Gad Getz and
                  Ivo Glynne Gut and
                  David Haan and
                  Arif Ozgun Harmanci and
                  Mohamed Helmy and
                  Ermin Hodzic and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Jong K. Kim and
                  Jan O. Korbel and
                  Erik Larsson and
                  Shantao Li and
                  Xiaotong Li and
                  Shaoke Lou and
                  Kathleen Marchal and
                  I{\~{n}}igo Martincorena and
                  Alexander Mart{\'{\i}}nez{-}Fundichely and
                  Patrick D. McGillivray and
                  William Meyerson and
                  Ferran Mui{\~{n}}os and
                  Marta Paczkowska and
                  Kiejung Park and
                  Jakob Skou Pedersen and
                  Tirso Pons and
                  Sergio Pulido{-}Tamayo and
                  Iker Reyes{-}Salazar and
                  Matthew A. Reyna and
                  Carlota Rubio{-}Perez and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Leonidas Salichos and
                  Mark Shackleton and
                  Raunak Shrestha and
                  Alfonso Valencia and
                  Miguel Vazquez and
                  Lieven P. C. Verbeke and
                  Jiayin Wang and
                  Jonathan Warrell and
                  Sebastian M. Waszak and
                  Joachim Weischenfeldt and
                  Guanming Wu and
                  Jun Yu and
                  Xuanping Zhang and
                  Yan Zhang and
                  Zhongming Zhao and
                  Lihua Zou and
                  Kadir C. Akdemir and
                  Eva G. Alvarez and
                  Adrian Baez{-}Ortega and
                  Paul C. Boutros and
                  David D. L. Bowtell and
                  Benedikt Brors and
                  Kathleen H. Burns and
                  Kin Chan and
                  Isidro Cort{\'{e}}s{-}Ciriano and
                  Ana Dueso{-}Barroso and
                  Andrew J. Dunford and
                  Paul A. Edwards and
                  Xavier Estivill and
                  Dariush Etemadmoghadam and
                  Milana Frenkel{-}Morgenstern and
                  Dmitry A. Gordenin and
                  Barbara Hutter and
                  David T. W. Jones and
                  Young Seok Ju and
                  Marat D. Kazanov and
                  Leszek J. Klimczak and
                  Youngil Koh and
                  Eunjung Alice Lee and
                  Jake June{-}Koo Lee and
                  Andy G. Lynch and
                  Geoff MacIntyre and
                  Florian Markowetz and
                  Matthew Meyerson and
                  Satoru Miyano and
                  Fabio C. P. Navarro and
                  Stephan Ossowski and
                  Peter J. Park and
                  John V. Pearson and
                  Montserrat Puiggr{\`{o}}s and
                  Karsten Rippe and
                  Steven A. Roberts and
                  Bernardo Rodriguez{-}Martin and
                  Ralph Scully and
                  David Torrents and
                  Izar Villasante and
                  Nicola Waddell and
                  Jeremiah A. Wala and
                  Lixing Yang and
                  Sung{-}Soo Yoon and
                  Jorge Zamora},
  title        = {Analyses of non-coding somatic drivers in 2,658 cancer whole genomes},
  journal      = {Nat.},
  volume       = {578},
  number       = {7793},
  pages        = {102--111},
  year         = {2020},
  url          = {https://doi.org/10.1038/s41586-020-1965-x},
  doi          = {10.1038/S41586-020-1965-X},
  timestamp    = {Thu, 11 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nature/RheinbayNAWSTHH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GrissaRKBJ20,
  author       = {Dhouha Grissa and
                  Ditlev Nytoft Rasmussen and
                  Aleksander Krag and
                  S{\o}ren Brunak and
                  Lars Juhl Jensen},
  title        = {Alcoholic liver disease: {A} registry view on comorbidities and disease
                  prediction},
  journal      = {PLoS Comput. Biol.},
  volume       = {16},
  number       = {9},
  year         = {2020},
  url          = {https://doi.org/10.1371/journal.pcbi.1008244},
  doi          = {10.1371/JOURNAL.PCBI.1008244},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/GrissaRKBJ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/f-egc/GrissaRKBJ20,
  author       = {Dhouha Grissa and
                  Ditlev Nytoft Rasmussen and
                  Aleksander Krag and
                  S{\o}ren Brunak and
                  Lars Juhl Jensen},
  editor       = {Antoine Cornu{\'{e}}jols and
                  {\'{E}}tienne Cuvelier},
  title        = {Using National Electronic Health Care Registries to Analyse and Predict
                  Alcoholic Liver Disease},
  booktitle    = {Extraction et Gestion des Connaissances, {EGC} 2020, Brussels, Belgium,
                  January 27-31, 2020},
  series       = {{RNTI}},
  volume       = {{E-36}},
  pages        = {389--390},
  publisher    = {{\'{E}}ditions {RNTI}},
  year         = {2020},
  url          = {http://editions-rnti.fr/?inprocid=1002596},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/f-egc/GrissaRKBJ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FenoyIJBN19,
  author       = {Emilio Fenoy and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Vanessa Isabell Jurtz and
                  S{\o}ren Brunak and
                  Morten Nielsen},
  title        = {A generic deep convolutional neural network framework for prediction
                  of receptor-ligand interactions - NetPhosPan: application to kinase
                  phosphorylation prediction},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {7},
  pages        = {1098--1107},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty715},
  doi          = {10.1093/BIOINFORMATICS/BTY715},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FenoyIJBN19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Aguayo-OrozcoAS19,
  author       = {Alejandro Aguayo{-}Orozco and
                  Karine Audouze and
                  Troels Siggaard and
                  Robert Barouki and
                  S{\o}ren Brunak and
                  Olivier Taboureau},
  title        = {sAOP: linking chemical stressors to adverse outcomes pathway networks},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {24},
  pages        = {5391--5392},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz570},
  doi          = {10.1093/BIOINFORMATICS/BTZ570},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Aguayo-OrozcoAS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/LademannLJB19,
  author       = {Martin Lademann and
                  Mette Lademann and
                  Anders Boeck Jensen and
                  S{\o}ren Brunak},
  title        = {Incorporating symptom data in longitudinal disease trajectories for
                  more detailed patient stratification},
  journal      = {Int. J. Medical Informatics},
  volume       = {129},
  pages        = {107--113},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.ijmedinf.2019.06.003},
  doi          = {10.1016/J.IJMEDINF.2019.06.003},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijmi/LademannLJB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Matey-Hernandez18,
  author       = {Maria Luisa Matey{-}Hernandez and
                  Lasse Maretty and
                  Jacob Malte Jensen and
                  Bent Petersen and
                  Jonas Andreas Sibbesen and
                  Siyang Liu and
                  Palle Villesen and
                  Laurits Skov and
                  Kirstine Belling and
                  Christian Theil Have and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Marie Grosjean and
                  Jette Bork{-}Jensen and
                  Jakob Grove and
                  Thomas D. Als and
                  Shujia Huang and
                  Yuqi Chang and
                  Ruiqi Xu and
                  Weijian Ye and
                  Junhua Rao and
                  Xiaosen Guo and
                  Jihua Sun and
                  Hongzhi Cao and
                  Chen Ye and
                  John van Beusekom and
                  Thomas Espeseth and
                  Esben N. Flindt and
                  Rune M. Friborg and
                  Anders E. Halager and
                  Stephanie Le Hellard and
                  Christina M. Hultman and
                  Francesco Lescai and
                  Shengting Li and
                  Ole Lund and
                  Peter L{\o}ngreen and
                  Thomas Mailund and
                  Ole Mors and
                  Christian N. S. Pedersen and
                  Thomas Sicheritz{-}Pont{\'{e}}n and
                  Patrick F. Sullivan and
                  Ali Syed and
                  David Westergaard and
                  Rachita Yadav and
                  Ning Li and
                  Xun Xu and
                  Torben Hansen and
                  Anders Krogh and
                  Lars Bolund and
                  Thorkild I. A. S{\o}rensen and
                  Oluf Pedersen and
                  Ramneek Gupta and
                  Simon Rasmussen and
                  S{\o}ren Besenbacher and
                  Anders D. B{\o}rglum and
                  Jun Wang and
                  Hans Eiberg and
                  Karsten Kristiansen and
                  Mikkel Heide Schierup and
                  S{\o}ren Brunak},
  title        = {Benchmarking the {HLA} typing performance of Polysolver and Optitype
                  in 50 Danish parental trios},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {239:1--239:12},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2239-6},
  doi          = {10.1186/S12859-018-2239-6},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/Matey-Hernandez18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RussoBVBSCSNBLG18,
  author       = {Francesco Russo and
                  Sebastiano Di Bella and
                  Federica Vannini and
                  Gabriele Berti and
                  Flavia Scoyni and
                  Helen Cook and
                  Alberto Santos and
                  Giovanni Nigita and
                  Vincenzo Bonnici and
                  Alessandro Lagan{\`{a}} and
                  Filippo Geraci and
                  Alfredo Pulvirenti and
                  Rosalba Giugno and
                  Federico De Masi and
                  Kirstine Belling and
                  Lars Juhl Jensen and
                  S{\o}ren Brunak and
                  Marco Pellegrini and
                  Alfredo Ferro},
  title        = {miRandola 2017: a curated knowledge base of non-invasive biomarkers},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D354--D359},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx854},
  doi          = {10.1093/NAR/GKX854},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/RussoBVBSCSNBLG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WestergaardSTJB18,
  author       = {David Westergaard and
                  Hans Henrik St{\ae}rfeldt and
                  Christian T{\o}nsberg and
                  Lars Juhl Jensen and
                  S{\o}ren Brunak},
  title        = {A comprehensive and quantitative comparison of text-mining in 15 million
                  full-text articles versus their corresponding abstracts},
  journal      = {PLoS Comput. Biol.},
  volume       = {14},
  number       = {2},
  year         = {2018},
  url          = {https://doi.org/10.1371/journal.pcbi.1005962},
  doi          = {10.1371/JOURNAL.PCBI.1005962},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/WestergaardSTJB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NguyenMBBFGHHJK17,
  author       = {Dac{-}Trung Nguyen and
                  Stephen L. Mathias and
                  Cristian Bologa and
                  S{\o}ren Brunak and
                  Nicolas F. Fernandez and
                  Anna Gaulton and
                  Anne Hersey and
                  Jayme Holmes and
                  Lars Juhl Jensen and
                  Anneli Karlsson and
                  Guixia Liu and
                  Avi Ma'ayan and
                  Geetha Mandava and
                  Subramani Mani and
                  Saurabh Mehta and
                  John P. Overington and
                  Juhee Patel and
                  Andrew D. Rouillard and
                  Stephan C. Sch{\"{u}}rer and
                  Timothy Sheils and
                  Anton Simeonov and
                  Larry A. Sklar and
                  Noel Southall and
                  Oleg Ursu and
                  Dusica Vidovic and
                  Anna Waller and
                  Jeremy J. Yang and
                  Ajit Jadhav and
                  Tudor I. Oprea and
                  Rajarshi Guha},
  title        = {Pharos: Collating protein information to shed light on the druggable
                  genome},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Database-Issue},
  pages        = {D995--D1002},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkw1072},
  doi          = {10.1093/NAR/GKW1072},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/NguyenMBBFGHHJK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/MarettyJPSLVSBH17,
  author       = {Lasse Maretty and
                  Jacob Malte Jensen and
                  Bent Petersen and
                  Jonas Andreas Sibbesen and
                  Siyang Liu and
                  Palle Villesen and
                  Laurits Skov and
                  Kirstine Belling and
                  Christian Theil Have and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Marie Grosjean and
                  Jette Bork{-}Jensen and
                  Jakob Grove and
                  Thomas D. Als and
                  Shujia Huang and
                  Yuqi Chang and
                  Ruiqi Xu and
                  Weijian Ye and
                  Junhua Rao and
                  Xiaosen Guo and
                  Jihua Sun and
                  Hongzhi Cao and
                  Chen Ye and
                  John van Beusekom and
                  Thomas Espeseth and
                  Esben N. Flindt and
                  Rune M. Friborg and
                  Anders E. Halager and
                  Stephanie Le Hellard and
                  Christina M. Hultman and
                  Francesco Lescai and
                  Shengting Li and
                  Ole Lund and
                  Peter L{\o}ngreen and
                  Thomas Mailund and
                  Maria Luisa Matey{-}Hernandez and
                  Ole Mors and
                  Christian N. S. Pedersen and
                  Thomas Sicheritz{-}Pont{\'{e}}n and
                  Patrick F. Sullivan and
                  Ali Syed and
                  David Westergaard and
                  Rachita Yadav and
                  Ning Li and
                  Xun Xu and
                  Torben Hansen and
                  Anders Krogh and
                  Lars Bolund and
                  Thorkild I. A. S{\o}rensen and
                  Oluf Pedersen and
                  Ramneek Gupta and
                  Simon Rasmussen and
                  S{\o}ren Besenbacher and
                  Anders D. B{\o}rglum and
                  Jun Wang and
                  Hans Eiberg and
                  Karsten Kristiansen and
                  S{\o}ren Brunak and
                  Mikkel Heide Schierup},
  title        = {Sequencing and \emph{de novo} assembly of 150 genomes from Denmark
                  as a population reference},
  journal      = {Nat.},
  volume       = {548},
  number       = {7665},
  pages        = {87--91},
  year         = {2017},
  url          = {https://doi.org/10.1038/nature23264},
  doi          = {10.1038/NATURE23264},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nature/MarettyJPSLVSBH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BeckWGB17,
  author       = {Mette Beck and
                  David Westergaard and
                  Leif Groop and
                  S{\o}ren Brunak},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Marylyn D. Ritchie and
                  Teri E. Klein},
  title        = {Temporal Order of Disease Pairs Affects Subsequent Disease Trajectories:
                  The Case of Diabetes and Sleep Apnea},
  booktitle    = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
                  Hawaii, USA, January 3-7, 2017},
  pages        = {380--389},
  year         = {2017},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb17/beck\_m.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/BeckWGB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KringelumKBLOT16,
  author       = {Jens Kringelum and
                  Sonny Kim Kj{\ae}rulff and
                  S{\o}ren Brunak and
                  Ole Lund and
                  Tudor I. Oprea and
                  Olivier Taboureau},
  title        = {ChemProt-3.0: a global chemical biology diseases mapping},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2016},
  year         = {2016},
  url          = {https://doi.org/10.1093/database/bav123},
  doi          = {10.1093/DATABASE/BAV123},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biodb/KringelumKBLOT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
  author       = {Jon C. Ison and
                  Kristoffer Rapacki and
                  Herv{\'{e}} M{\'{e}}nager and
                  Mat{\'{u}}s Kalas and
                  Emil Rydza and
                  Piotr Chmura and
                  Christian Anthon and
                  Niall Beard and
                  Karel Berka and
                  Dan M. Bolser and
                  Tim Booth and
                  Anthony Bretaudeau and
                  Jan Brezovsky and
                  Rita Casadio and
                  Gianni Cesareni and
                  Frederik Coppens and
                  Michael Cornell and
                  Gianmauro Cuccuru and
                  Kristian Davidsen and
                  Gianluca Della Vedova and
                  Tunca Dogan and
                  Olivia Doppelt{-}Azeroual and
                  Laura Emery and
                  Elisabeth Gasteiger and
                  Thomas Gatter and
                  Tatyana Goldberg and
                  Marie Grosjean and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Manuela Helmer{-}Citterich and
                  Hans Ienasescu and
                  Vassilios Ioannidis and
                  Martin Closter Jespersen and
                  Rafael C. Jim{\'{e}}nez and
                  Nick S. Juty and
                  Peter Juvan and
                  Maximilian Koch and
                  Camille Laibe and
                  Jing{-}Woei Li and
                  Luana Licata and
                  Fabien Mareuil and
                  Ivan Micetic and
                  Rune M{\o}llegaard Friborg and
                  S{\'{e}}bastien Moretti and
                  Chris Morris and
                  Steffen M{\"{o}}ller and
                  Aleksandra Nenadic and
                  Hedi Peterson and
                  Giuseppe Profiti and
                  Peter M. Rice and
                  Paolo Romano and
                  Paola Roncaglia and
                  Rabie Saidi and
                  Andrea Schafferhans and
                  Veit Schw{\"{a}}mmle and
                  Callum Smith and
                  Maria Maddalena Sperotto and
                  Heinz Stockinger and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Silvio C. E. Tosatto and
                  Victor de la Torre and
                  Paolo Uva and
                  Allegra Via and
                  Guy Yachdav and
                  Federico Zambelli and
                  Gert Vriend and
                  Burkhard Rost and
                  Helen E. Parkinson and
                  Peter L{\o}ngreen and
                  S{\o}ren Brunak},
  title        = {Tools and data services registry: a community effort to document bioinformatics
                  resources},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {38--47},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1116},
  doi          = {10.1093/NAR/GKV1116},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/MalaspinasWMSLA16,
  author       = {Anna{-}Sapfo Malaspinas and
                  Michael C. Westaway and
                  Craig Muller and
                  Vitor C. Sousa and
                  Oscar Lao and
                  Isabel Alves and
                  Anders Bergstr{\"{o}}m and
                  Georgios Athanasiadis and
                  Jade Yu Cheng and
                  Jacob E. Crawford and
                  Tim H. Heupink and
                  Enrico Macholdt and
                  Stephan Peischl and
                  Simon Rasmussen and
                  Stephan Schiffels and
                  Sankar Subramanian and
                  Joanne L. Wright and
                  Anders Albrechtsen and
                  Chiara Barbieri and
                  Isabelle Dupanloup and
                  Anders Eriksson and
                  Ashot Margaryan and
                  Ida Moltke and
                  Irina Pugach and
                  Thorfinn Sand Korneliussen and
                  Ivan P. Levkivskyi and
                  Jos{\'{e}} V{\'{\i}}ctor Moreno{-}Mayar and
                  Shengyu Ni and
                  Fernando Racimo and
                  Martin Sikora and
                  Yali Xue and
                  Farhang A. Aghakhanian and
                  Nicolas Brucato and
                  S{\o}ren Brunak and
                  Paula F. Campos and
                  Warren Clark and
                  Sturla Ellingv{\aa}g and
                  Gudjugudju Fourmile and
                  Pascale Gerbault and
                  Darren Injie and
                  George Koki and
                  Matthew Leavesley and
                  Betty Logan and
                  Aubrey Lynch and
                  Elizabeth A. Matisoo{-}Smith and
                  Peter J. McAllister and
                  Alexander J. Mentzer and
                  Mait Metspalu and
                  Andrea B. Migliano and
                  Les Murgha and
                  Maude E. Phipps and
                  William Pomat and
                  Doc Reynolds and
                  Francois{-}Xavier Ricaut and
                  Peter Siba and
                  Mark G. Thomas and
                  Thomas Wales and
                  Colleen Ma'run Wall and
                  Stephen J. Oppenheimer and
                  Chris Tyler{-}Smith and
                  Richard Durbin and
                  Joe Dortch and
                  Andrea Manica and
                  Mikkel H. Schierup and
                  Robert A. Foley and
                  Marta Miraz{\'{o}}n Lahr and
                  Claire Bowern and
                  Jeffrey D. Wall and
                  Thomas Mailund and
                  Mark Stoneking and
                  Rasmus Nielsen and
                  Manjinder S. Sandhu and
                  Laurent Excoffier and
                  David M. Lambert and
                  Eske Willerslev},
  title        = {A genomic history of Aboriginal Australia},
  journal      = {Nat.},
  volume       = {538},
  number       = {7624},
  pages        = {207--214},
  year         = {2016},
  url          = {https://doi.org/10.1038/nature18299},
  doi          = {10.1038/NATURE18299},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nature/MalaspinasWMSLA16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/ForslundHNFCSPV15,
  author       = {Kristoffer Forslund and
                  Falk Hildebrand and
                  Trine Rask Nielsen and
                  Gwen Falony and
                  Emmanuelle Le Chatelier and
                  Shinichi Sunagawa and
                  Edi Prifti and
                  Sara Vieira{-}Silva and
                  Valborg Gudmundsdottir and
                  Helle Krogh Pedersen and
                  Manimozhiyan Arumugam and
                  Karsten Kristiansen and
                  Anita Yvonne Voigt and
                  Henrik Vestergaard and
                  Rajna Hercog and
                  Paul I. Costea and
                  Jens Roat Kultima and
                  Junhua Li and
                  Torben J{\o}rgensen and
                  Florence Levenez and
                  Jo{\"{e}}l Dore and
                  Henrik Bj{\o}rn Nielsen and
                  S{\o}ren Brunak and
                  Jeroen Raes and
                  Torben Hansen and
                  Jun Wang and
                  S. Dusko Ehrlich and
                  Peer Bork and
                  Oluf Pedersen},
  title        = {Disentangling type 2 diabetes and metformin treatment signatures in
                  the human gut microbiota},
  journal      = {Nat.},
  volume       = {528},
  number       = {7582},
  pages        = {262--266},
  year         = {2015},
  url          = {https://doi.org/10.1038/nature15766},
  doi          = {10.1038/NATURE15766},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nature/ForslundHNFCSPV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WeegarKSBD15,
  author       = {Rebecka Weegar and
                  Maria Kvist and
                  Karin Sundstr{\"{o}}m and
                  S{\o}ren Brunak and
                  Hercules Dalianis},
  title        = {Finding Cervical Cancer Symptoms in Swedish Clinical Text using a
                  Machine Learning Approach and NegEx},
  booktitle    = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
                  San Francisco, CA, USA, November 14-18, 2015},
  publisher    = {{AMIA}},
  year         = {2015},
  url          = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2225624-1.2745498/2245432-1.2745495},
  timestamp    = {Wed, 04 Aug 2021 11:13:07 +0200},
  biburl       = {https://dblp.org/rec/conf/amia/WeegarKSBD15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BrunakVMRRS15,
  author       = {S{\o}ren Brunak and
                  Francisco M. de la Vega and
                  Adam A. Margolin and
                  Benjamin J. Raphael and
                  Gunnar R{\"{a}}tsch and
                  Joshua M. Stuart},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Teri E. Klein and
                  Marylyn D. Ritchie},
  title        = {Session Introduction},
  booktitle    = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast,
                  Hawaii, USA, January 4-8, 2015},
  pages        = {8--9},
  year         = {2015},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb15/intro-panomics.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/BrunakVMRRS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KouskoumvekakiSB14,
  author       = {Irene Kouskoumvekaki and
                  Nour Shublaq and
                  S{\o}ren Brunak},
  title        = {Facilitating the use of large-scale biological data and tools in the
                  era of translational bioinformatics},
  journal      = {Briefings Bioinform.},
  volume       = {15},
  number       = {6},
  pages        = {942--952},
  year         = {2014},
  url          = {https://doi.org/10.1093/bib/bbt055},
  doi          = {10.1093/BIB/BBT055},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KouskoumvekakiSB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/Krysiak-BaltynPAJAB14,
  author       = {Konrad Krysiak{-}Baltyn and
                  Thomas Nordahl Petersen and
                  Karine Audouze and
                  Niels J{\o}rgensen and
                  Lars {\"{A}}ngquist and
                  S{\o}ren Brunak},
  title        = {Compass: {A} hybrid method for clinical and biobank data mining},
  journal      = {J. Biomed. Informatics},
  volume       = {47},
  pages        = {160--170},
  year         = {2014},
  url          = {https://doi.org/10.1016/j.jbi.2013.10.007},
  doi          = {10.1016/J.JBI.2013.10.007},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jbi/Krysiak-BaltynPAJAB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/ArumugamRPPYMFT14,
  author       = {Manimozhiyan Arumugam and
                  Jeroen Raes and
                  Eric Pelletier and
                  Denis Le Paslier and
                  Takuji Yamada and
                  Daniel R. Mende and
                  Gabriel R. Fernandes and
                  Julien Tap and
                  Thomas Br{\"{u}}ls and
                  Jean{-}Michel Batto and
                  Marcelo Bertalan and
                  Natalia Borruel and
                  Francesc Casellas and
                  Leyden Fern{\'{a}}ndez and
                  Laurent Gautier and
                  Torben Hansen and
                  Masahira Hattori and
                  Tetsuya Hayashi and
                  Michiel Kleerebezem and
                  Ken Kurokawa and
                  Marion Leclerc and
                  Florence Levenez and
                  Chaysavanh Manichanh and
                  Henrik Bj{\o}rn Nielsen and
                  Trine Rask Nielsen and
                  Nicolas Pons and
                  Julie Poulain and
                  Junjie Qin and
                  Thomas Sicheritz{-}Pont{\'{e}}n and
                  Sebastian Tims and
                  David Torrents and
                  Edgardo Ugarte and
                  Erwin G. Zoetendal and
                  Jun Wang and
                  Francisco Guarner and
                  Oluf Pedersen and
                  Willem M. de Vos and
                  S{\o}ren Brunak and
                  Jo{\"{e}}l Dore and
                  MetaHIT consortium and
                  Jean Weissenbach and
                  S. Dusko Ehrlich and
                  Peer Bork},
  title        = {Addendum: Enterotypes of the human gut microbiome},
  journal      = {Nat.},
  volume       = {506},
  number       = {7489},
  pages        = {516},
  year         = {2014},
  url          = {https://doi.org/10.1038/nature13075},
  doi          = {10.1038/NATURE13075},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nature/ArumugamRPPYMFT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-louhi/ThomasJWB14,
  author       = {Cecilia Engel Thomas and
                  Peter Bj{\o}dstrup Jensen and
                  Thomas Werge and
                  S{\o}ren Brunak},
  editor       = {Sumithra Velupillai and
                  Martin Duneld and
                  Maria Kvist and
                  Hercules Dalianis and
                  Maria Skeppstedt and
                  Aron Henriksson},
  title        = {Negation scope and spelling variation for text-mining of Danish electronic
                  patient records},
  booktitle    = {Proceedings of the 5th International Workshop on Health Text Mining
                  and Information Analysis, Louhi@EACL 2014, Gothenburg, Sweden, April
                  27, 2014},
  pages        = {64--68},
  publisher    = {Association for Computational Linguistics},
  year         = {2014},
  url          = {https://doi.org/10.3115/v1/W14-1109},
  doi          = {10.3115/V1/W14-1109},
  timestamp    = {Fri, 06 Aug 2021 00:41:34 +0200},
  biburl       = {https://dblp.org/rec/conf/acl-louhi/ThomasJWB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BrunakVRS14,
  author       = {S{\o}ren Brunak and
                  Francisco M. de la Vega and
                  Gunnar R{\"{a}}tsch and
                  Joshua M. Stuart},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Teri E. Klein and
                  Marylyn D. Ritchie},
  title        = {Session Introduction},
  booktitle    = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
                  Hawaii, USA, January 3-7, 2014},
  pages        = {1--2},
  year         = {2014},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb14/intro-cp.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/BrunakVRS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ErikssonJFJB13,
  author       = {Robert Eriksson and
                  Peter Bj{\o}dstrup Jensen and
                  Sune Frankild and
                  Lars Juhl Jensen and
                  S{\o}ren Brunak},
  title        = {Dictionary construction and identification of possible adverse drug
                  events in Danish clinical narrative text},
  journal      = {J. Am. Medical Informatics Assoc.},
  volume       = {20},
  number       = {5},
  pages        = {947--953},
  year         = {2013},
  url          = {https://doi.org/10.1136/amiajnl-2013-001708},
  doi          = {10.1136/AMIAJNL-2013-001708},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jamia/ErikssonJFJB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KjaerulffWKJKALBOT13,
  author       = {Sonny Kim Kj{\ae}rulff and
                  Louis Wich and
                  Jens Kringelum and
                  Ulrik Plesner Jacobsen and
                  Irene Kouskoumvekaki and
                  Karine Audouze and
                  Ole Lund and
                  S{\o}ren Brunak and
                  Tudor I. Oprea and
                  Olivier Taboureau},
  title        = {ChemProt-2.0: visual navigation in a disease chemical biology database},
  journal      = {Nucleic Acids Res.},
  volume       = {41},
  number       = {Database-Issue},
  pages        = {464--469},
  year         = {2013},
  url          = {https://doi.org/10.1093/nar/gks1166},
  doi          = {10.1093/NAR/GKS1166},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/KjaerulffWKJKALBOT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PersDTLB13,
  author       = {Tune H. Pers and
                  Piotr Dworzynski and
                  Cecilia Engel Thomas and
                  Kasper Lage and
                  S{\o}ren Brunak},
  title        = {MetaRanker 2.0: a web server for prioritization of genetic variation
                  data},
  journal      = {Nucleic Acids Res.},
  volume       = {41},
  number       = {Webserver-Issue},
  pages        = {104--108},
  year         = {2013},
  url          = {https://doi.org/10.1093/nar/gkt387},
  doi          = {10.1093/NAR/GKT387},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PersDTLB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/MaegaardHBSAW13,
  author       = {Bente Maegaard and
                  Udo Hahn and
                  S{\o}ren Brunak and
                  Stefan Schulz and
                  Ulrich Andersen and
                  Sebastian Welter},
  editor       = {Christoph Ulrich Lehmann and
                  Elske Ammenwerth and
                  Christian N{\o}hr},
  title        = {Question Answering for Health Professionals and Laypersons},
  booktitle    = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
                  and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
  series       = {Studies in Health Technology and Informatics},
  volume       = {192},
  pages        = {1244},
  publisher    = {{IOS} Press},
  year         = {2013},
  timestamp    = {Thu, 29 Mar 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/medinfo/MaegaardHBSAW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWB11,
  author       = {Kai Wang and
                  Rasmus Wernersson and
                  S{\o}ren Brunak},
  title        = {The strength of intron donor splice sites in human genes displays
                  a bell-shaped pattern},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {22},
  pages        = {3079--3084},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr532},
  doi          = {10.1093/BIOINFORMATICS/BTR532},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangWB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiEBDHSSPBRS11,
  author       = {Qiyuan Li and
                  Aron C. Eklund and
                  Nicolai J. Birkbak and
                  Christine Desmedt and
                  Benjamin Haibe{-}Kains and
                  Christos P. Sotiriou and
                  W. Fraser Symmans and
                  Lajos Pusztai and
                  S{\o}ren Brunak and
                  Andrea L. Richardson and
                  Zoltan Szallasi},
  title        = {Consistent metagenes from cancer expression profiles yield agent specific
                  predictors of chemotherapy response},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {310},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-310},
  doi          = {10.1186/1471-2105-12-310},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LiEBDHSSPBRS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TaboureauNAWERKBCJBO11,
  author       = {Olivier Taboureau and
                  Sonny Kim Nielsen and
                  Karine Audouze and
                  Nils Weinhold and
                  Daniel Edsg{\"{a}}rd and
                  Francisco S. Roque and
                  Irene Kouskoumvekaki and
                  Alina Bora and
                  Ramona Curpan and
                  Thomas Sk{\o}t Jensen and
                  S{\o}ren Brunak and
                  Tudor I. Oprea},
  title        = {ChemProt: a disease chemical biology database},
  journal      = {Nucleic Acids Res.},
  volume       = {39},
  number       = {Database-Issue},
  pages        = {367--372},
  year         = {2011},
  url          = {https://doi.org/10.1093/nar/gkq906},
  doi          = {10.1093/NAR/GKQ906},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/TaboureauNAWERKBCJBO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RoqueJSDAHSBJWJB11,
  author       = {Francisco S. Roque and
                  Peter Bj{\o}dstrup Jensen and
                  Henriette Schmock and
                  Marlene Dalgaard and
                  Massimo Andreatta and
                  Thomas Folkmann Hansen and
                  Karen S{\o}eby and
                  S{\o}ren Bredkj{\ae}r and
                  Anders Juul and
                  Thomas Werge and
                  Lars Juhl Jensen and
                  S{\o}ren Brunak},
  title        = {Using Electronic Patient Records to Discover Disease Correlations
                  and Stratify Patient Cohorts},
  journal      = {PLoS Comput. Biol.},
  volume       = {7},
  number       = {8},
  year         = {2011},
  url          = {https://doi.org/10.1371/journal.pcbi.1002141},
  doi          = {10.1371/JOURNAL.PCBI.1002141},
  timestamp    = {Sat, 15 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/RoqueJSDAHSBJWJB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GauthierJWBJ10,
  author       = {Nicholas Paul Gauthier and
                  Lars Juhl Jensen and
                  Rasmus Wernersson and
                  S{\o}ren Brunak and
                  Thomas Sk{\o}t Jensen},
  title        = {Cyclebase.org: version 2.0, an updated comprehensive, multi-species
                  repository of cell cycle experiments and derived analysis results},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Database-Issue},
  pages        = {699--702},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkp1044},
  doi          = {10.1093/NAR/GKP1044},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GauthierJWBJ10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AudouzeJRKWTJB10,
  author       = {Karine Audouze and
                  Agnieszka Sierakowska Juncker and
                  Francisco S. Roque and
                  Konrad Krysiak{-}Baltyn and
                  Nils Weinhold and
                  Olivier Taboureau and
                  Thomas Sk{\o}t Jensen and
                  S{\o}ren Brunak},
  title        = {Deciphering Diseases and Biological Targets for Environmental Chemicals
                  using Toxicogenomics Networks},
  journal      = {PLoS Comput. Biol.},
  volume       = {6},
  number       = {5},
  year         = {2010},
  url          = {https://doi.org/10.1371/journal.pcbi.1000788},
  doi          = {10.1371/JOURNAL.PCBI.1000788},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/AudouzeJRKWTJB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PappalardoHRZAEPDPPMCRSMCBLBMLBB09,
  author       = {Francesco Pappalardo and
                  Mark D. Halling{-}Brown and
                  Nicolas Rapin and
                  Ping Zhang and
                  Davide Alemani and
                  Andrew P. J. Emerson and
                  Paola Paci and
                  Patrice Duroux and
                  Marzio Pennisi and
                  Arianna Palladini and
                  Olivo Miotto and
                  Daniel Churchill and
                  Elda Rossi and
                  Adrian J. Shepherd and
                  David S. Moss and
                  Filippo Castiglione and
                  Massimo Bernaschi and
                  Marie{-}Paule Lefranc and
                  S{\o}ren Brunak and
                  Santo Motta and
                  Pierluigi Lollini and
                  Kaye E. Basford and
                  Vladimir Brusic},
  title        = {ImmunoGrid, an integrative environment for large-scale simulation
                  of the immune system for vaccine discovery, design and optimization},
  journal      = {Briefings Bioinform.},
  volume       = {10},
  number       = {3},
  pages        = {330--340},
  year         = {2009},
  url          = {https://doi.org/10.1093/bib/bbp014},
  doi          = {10.1093/BIB/BBP014},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/PappalardoHRZAEPDPPMCRSMCBLBMLBB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GauthierLWLJBJ08,
  author       = {Nicholas Paul Gauthier and
                  Malene Erup Larsen and
                  Rasmus Wernersson and
                  Ulrik de Lichtenberg and
                  Lars Juhl Jensen and
                  S{\o}ren Brunak and
                  Thomas Sk{\o}t Jensen},
  title        = {Cyclebase.org - a comprehensive multi-organism online database of
                  cell-cycle experiments},
  journal      = {Nucleic Acids Res.},
  volume       = {36},
  number       = {Database-Issue},
  pages        = {854--859},
  year         = {2008},
  url          = {https://doi.org/10.1093/nar/gkm729},
  doi          = {10.1093/NAR/GKM729},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GauthierLWLJBJ08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LundegaardLKBN07,
  author       = {Claus Lundegaard and
                  Ole Lund and
                  Can Kesmir and
                  S{\o}ren Brunak and
                  Morten Nielsen},
  title        = {Modeling the adaptive immune system: predictions and simulations},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {24},
  pages        = {3265--3275},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm471},
  doi          = {10.1093/BIOINFORMATICS/BTM471},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LundegaardLKBN07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PanitzSHGHCTMHVZWWWJSALSGNHBFB07,
  author       = {Frank Panitz and
                  Henrik Stengaard and
                  Henrik Hornsh{\o}j and
                  Jan Gorodkin and
                  Jakob Hedegaard and
                  Susanna Cirera and
                  Bo Thomsen and
                  Lone B. Madsen and
                  Anette H{\o}j and
                  Rikke K. Vingborg and
                  Bujie Zahn and
                  Xuegang Wang and
                  Xuefei Wang and
                  Rasmus Wernersson and
                  Claus B. J{\o}rgensen and
                  Karsten Scheibye{-}Knudsen and
                  Troels Arvin and
                  Steen Lumholdt and
                  Milena Sawera and
                  Trine Green and
                  Bente J. Nielsen and
                  Jakob Hull Havgaard and
                  S{\o}ren Brunak and
                  Merete Fredholm and
                  Christian Bendixen},
  title        = {{SNP} mining porcine ESTs with MAVIANT, a novel tool for {SNP} evaluation
                  and annotation},
  booktitle    = {Proceedings 15th International Conference on Intelligent Systems for
                  Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
                  Biology (ECCB), Vienna, Austria, July 21-25, 2007},
  pages        = {387--391},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm192},
  doi          = {10.1093/BIOINFORMATICS/BTM192},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/PanitzSHGHCTMHVZWWWJSALSGNHBFB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HansenKJBJ06,
  author       = {Niclas Tue Hansen and
                  Irene Kouskoumvekaki and
                  Flemming Steen J{\o}rgensen and
                  S{\o}ren Brunak and
                  Svava {\'{O}}sk J{\'{o}}nsd{\'{o}}ttir},
  title        = {Prediction of pH-Dependent Aqueous Solubility of Druglike Molecules},
  journal      = {J. Chem. Inf. Model.},
  volume       = {46},
  number       = {6},
  pages        = {2601--2609},
  year         = {2006},
  url          = {https://doi.org/10.1021/ci600292q},
  doi          = {10.1021/CI600292Q},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/HansenKJBJ06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NeshichBB06,
  author       = {Goran Neshich and
                  Philip E. Bourne and
                  S{\o}ren Brunak},
  title        = {{ISMB} 2006},
  journal      = {PLoS Comput. Biol.},
  volume       = {2},
  number       = {2},
  year         = {2006},
  url          = {https://doi.org/10.1371/journal.pcbi.0020011},
  doi          = {10.1371/JOURNAL.PCBI.0020011},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/NeshichBB06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BourneB06,
  author       = {Philip E. Bourne and
                  S{\o}ren Brunak},
  title        = {{ISMB} 2006},
  booktitle    = {Proceedings 14th International Conference on Intelligent Systems for
                  Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
  pages        = {1--2},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl373},
  doi          = {10.1093/BIOINFORMATICS/BTL373},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BourneB06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0014218,
  author       = {Ole Lund and
                  Morten Nielsen and
                  Claus Lundegaard and
                  Can Kesmir and
                  S{\o}ren Brunak},
  title        = {Immunological bioinformatics},
  series       = {Computational molecular biology},
  publisher    = {{AAAI} Press},
  year         = {2005},
  isbn         = {978-0-262-12280-1},
  timestamp    = {Fri, 12 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/daglib/0014218.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LichtenbergJFJBB05,
  author       = {Ulrik de Lichtenberg and
                  Lars Juhl Jensen and
                  Anders Fausb{\o}ll and
                  Thomas Sk{\o}t Jensen and
                  Peer Bork and
                  S{\o}ren Brunak},
  title        = {Comparison of computational methods for the identification of cell
                  cycle-regulated genes},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {7},
  pages        = {1164--1171},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti093},
  doi          = {10.1093/BIOINFORMATICS/BTI093},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LichtenbergJFJBB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonsdottirJB05,
  author       = {Svava {\'{O}}sk J{\'{o}}nsd{\'{o}}ttir and
                  Flemming Steen J{\o}rgensen and
                  S{\o}ren Brunak},
  title        = {Prediction methods and databases within chemoinformatics: emphasis
                  on drugs and drug candidates},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {10},
  pages        = {2145--2160},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti314},
  doi          = {10.1093/BIOINFORMATICS/BTI314},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JonsdottirJB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BendtsenNWPB05,
  author       = {Jannick Dyrl{\o}v Bendtsen and
                  Henrik Nielsen and
                  David Widdick and
                  Tracy Palmer and
                  S{\o}ren Brunak},
  title        = {Prediction of twin-arginine signal peptides},
  journal      = {{BMC} Bioinform.},
  volume       = {6},
  pages        = {167},
  year         = {2005},
  url          = {https://doi.org/10.1186/1471-2105-6-167},
  doi          = {10.1186/1471-2105-6-167},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BendtsenNWPB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/AndersenB04,
  author       = {Claus A. F. Andersen and
                  S{\o}ren Brunak},
  title        = {Representation of Protein-Sequence Information by Amino Acid Subalphabets},
  journal      = {{AI} Mag.},
  volume       = {25},
  number       = {1},
  pages        = {97--104},
  year         = {2004},
  url          = {https://doi.org/10.1609/aimag.v25i1.1750},
  doi          = {10.1609/AIMAG.V25I1.1750},
  timestamp    = {Tue, 25 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/aim/AndersenB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NielsenLWSLBBL04,
  author       = {Morten Nielsen and
                  Claus Lundegaard and
                  Peder Worning and
                  Christina Sylvester{-}Hvid and
                  Kasper Lamberth and
                  S{\o}ren Buus and
                  S{\o}ren Brunak and
                  Ole Lund},
  title        = {Improved prediction of {MHC} class {I} and class {II} epitopes using
                  a novel Gibbs sampling approach},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {9},
  pages        = {1388--1397},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth100},
  doi          = {10.1093/BIOINFORMATICS/BTH100},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NielsenLWSLBBL04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KiemerLBB04,
  author       = {Lars Kiemer and
                  Ole Lund and
                  S{\o}ren Brunak and
                  Nikolaj Blom},
  title        = {Coronavirus 3CL\({}^{\mbox{\emph{pro }}}\)proteinase cleavage sites:
                  Possible relevance to {SARS} virus pathology},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {72},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-72},
  doi          = {10.1186/1471-2105-5-72},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KiemerLBB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icaris/LundegaardNLWSBBL04,
  author       = {Claus Lundegaard and
                  Morten Nielsen and
                  Kasper Lamberth and
                  Peder Worning and
                  Christina Sylvester{-}Hvid and
                  S{\o}ren Buus and
                  S{\o}ren Brunak and
                  Ole Lund},
  editor       = {Giuseppe Nicosia and
                  Vincenzo Cutello and
                  Peter J. Bentley and
                  Jon Timmis},
  title        = {{MHC} Class {I} Epitope Binding Prediction Trained on Small Data Sets},
  booktitle    = {Artificial Immune Systems, Third International Conference, {ICARIS}
                  2004, Catania, Sicily, Italy, September 13-16, 2004},
  series       = {Lecture Notes in Computer Science},
  volume       = {3239},
  pages        = {217--225},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-30220-9\_18},
  doi          = {10.1007/978-3-540-30220-9\_18},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icaris/LundegaardNLWSBBL04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JensenGSB03,
  author       = {Lars Juhl Jensen and
                  Ramneek Gupta and
                  Hans Henrik St{\ae}rfeldt and
                  S{\o}ren Brunak},
  title        = {Prediction of human protein function according to Gene Ontology categories},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {635--642},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg036},
  doi          = {10.1093/BIOINFORMATICS/BTG036},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JensenGSB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CourGRSPB03,
  author       = {Tanja la Cour and
                  Ramneek Gupta and
                  Kristoffer Rapacki and
                  Karen Skriver and
                  Flemming M. Poulsen and
                  S{\o}ren Brunak},
  title        = {NESbase version 1.0: a database of nuclear export signals},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {393--396},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg101},
  doi          = {10.1093/NAR/GKG101},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CourGRSPB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/ChristensenLNLWLBBL03,
  author       = {Jens Kaae Christensen and
                  Kasper Lamberth and
                  Morten Nielsen and
                  Claus Lundegaard and
                  Peder Worning and
                  Sanne Lise Lauem{\o}ller and
                  S{\o}ren Buus and
                  S{\o}ren Brunak and
                  Ole Lund},
  title        = {Selecting Informative Data for Developing Peptide-MHC Binding Predictors
                  Using a Query by Committee Approach},
  journal      = {Neural Comput.},
  volume       = {15},
  number       = {12},
  pages        = {2931--2942},
  year         = {2003},
  url          = {https://doi.org/10.1162/089976603322518803},
  doi          = {10.1162/089976603322518803},
  timestamp    = {Tue, 01 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neco/ChristensenLNLWLBBL03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/msps/LundegaardPNBBBGL03,
  author       = {Claus Lundegaard and
                  Thomas Nordahl Petersen and
                  Morten Nielsen and
                  Henrik Bohr and
                  Jakob Bohr and
                  S{\o}ren Brunak and
                  Garry Gippert and
                  Ole Lund},
  editor       = {Concettina Guerra and
                  Sorin Istrail},
  title        = {Prediction of Protein Secondary Structure at High Accuracy Using a
                  Combination of Many Neural Networks},
  booktitle    = {Mathematical Methods for Protein Structure Analysis and Design, Advanced
                  Lectures},
  series       = {Lecture Notes in Computer Science},
  volume       = {2666},
  pages        = {117--122},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/978-3-540-44827-3\_7},
  doi          = {10.1007/978-3-540-44827-3\_7},
  timestamp    = {Tue, 14 May 2019 10:00:42 +0200},
  biburl       = {https://dblp.org/rec/conf/msps/LundegaardPNBBBGL03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpickerWLCWOBK02,
  author       = {Jeppe S. Spicker and
                  Friedrik Wikman and
                  Ming{-}Lan Lu and
                  Carlos Cordon{-}Cardo and
                  Christopher T. Workman and
                  Torben F. {\O}rntoft and
                  S{\o}ren Brunak and
                  Steen Knudsen},
  title        = {Neural network predicts sequence of {TP53} gene based on {DNA} chip},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {8},
  pages        = {1133--1134},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.8.1133},
  doi          = {10.1093/BIOINFORMATICS/18.8.1133},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SpickerWLCWOBK02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/UsserySBSWK02,
  author       = {David Ussery and
                  Dikeos Mario Soumpasis and
                  S{\o}ren Brunak and
                  Hans Henrik St{\ae}rfeldt and
                  Peder Worning and
                  Anders Krogh},
  title        = {Bias of Purine Stretches in Sequenced Chromosomes},
  journal      = {Comput. Chem.},
  volume       = {26},
  number       = {5},
  pages        = {531--541},
  year         = {2002},
  url          = {https://doi.org/10.1016/S0097-8485(02)00013-X},
  doi          = {10.1016/S0097-8485(02)00013-X},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/UsserySBSWK02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GuptaB02,
  author       = {Ramneek Gupta and
                  S{\o}ren Brunak},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Teri E. Klein},
  title        = {Prediction of Glycosylation Across the Human Proteome and the Correlation
                  to Protein Function},
  booktitle    = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
                  Lihue, Hawaii, USA, January 3-7, 2002},
  pages        = {310--322},
  year         = {2002},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb02/gupta.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/GuptaB02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0009521,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak},
  title        = {Bioinformatics - the machine learning approach {(2.} ed.)},
  publisher    = {{MIT} Press},
  year         = {2001},
  isbn         = {978-0-262-02506-5},
  timestamp    = {Fri, 15 Apr 2011 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/daglib/0009521.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaisneeBBP01,
  author       = {Pierre{-}Fran{\c{c}}ois Baisn{\'{e}}e and
                  Pierre Baldi and
                  S{\o}ren Brunak and
                  Anders Gorm Pedersen},
  title        = {Flexibility of the genetic code with respect to {DNA} structure},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {3},
  pages        = {237--248},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.3.237},
  doi          = {10.1093/BIOINFORMATICS/17.3.237},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaisneeBBP01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/GorodkinSBDKB01,
  author       = {Jan Gorodkin and
                  Bodil S{\o}gaard and
                  Hanne Bay and
                  Hans Doll and
                  Per K{\o}lster and
                  S{\o}ren Brunak},
  title        = {Recognition of Environmental and Genetic Effects on Barley Phenolic
                  Fingerprints by Neural Networks},
  journal      = {Comput. Chem.},
  volume       = {25},
  number       = {3},
  pages        = {301--307},
  year         = {2001},
  url          = {https://doi.org/10.1016/S0097-8485(00)00103-0},
  doi          = {10.1016/S0097-8485(00)00103-0},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/GorodkinSBDKB01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BrunakK01,
  author       = {S{\o}ren Brunak and
                  Anders Krogh},
  title        = {{ISMB} 2001},
  booktitle    = {Proceedings of the Ninth International Conference on Intelligent Systems
                  for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
  pages        = {1--4},
  year         = {2001},
  timestamp    = {Thu, 20 Jun 2002 11:09:36 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/BrunakK01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BaldiB01,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Teri E. Klein},
  title        = {Bioethics, Fiction Science, and the Future of Mankind - Session Introduction},
  booktitle    = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
                  Hawaii, USA, January 3-7, 2001},
  year         = {2001},
  timestamp    = {Mon, 22 Jun 2015 17:24:45 +0200},
  biburl       = {https://dblp.org/rec/conf/psb/BaldiB01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/seqlearn/BaldiBFPS01,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak and
                  Paolo Frasconi and
                  Gianluca Pollastri and
                  Giovanni Soda},
  editor       = {Ron Sun and
                  C. Lee Giles},
  title        = {Bidirectional Dynamics for Protein Secondary Structure Prediction},
  booktitle    = {Sequence Learning - Paradigms, Algorithms, and Applications},
  series       = {Lecture Notes in Computer Science},
  volume       = {1828},
  pages        = {80--104},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-44565-X\_5},
  doi          = {10.1007/3-540-44565-X\_5},
  timestamp    = {Sun, 25 Oct 2020 23:14:05 +0100},
  biburl       = {https://dblp.org/rec/conf/seqlearn/BaldiBFPS01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0002479,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak},
  title        = {Bioinformatics - the machine learning approach},
  publisher    = {{MIT} Press},
  year         = {2000},
  isbn         = {978-0-262-02442-6},
  timestamp    = {Mon, 18 Apr 2011 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/daglib/0002479.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiBCAN00,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak and
                  Yves Chauvin and
                  Claus A. F. Andersen and
                  Henrik Nielsen},
  title        = {Assessing the accuracy of prediction algorithms for classification:
                  an overview},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {5},
  pages        = {412--424},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.5.412},
  doi          = {10.1093/BIOINFORMATICS/16.5.412},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaldiBCAN00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/FrimurerBNLB00,
  author       = {Thomas M. Frimurer and
                  Robert Bywater and
                  Lars N{\ae}rum and
                  Leif N{\o}rskov Lauritsen and
                  S{\o}ren Brunak},
  title        = {Improving the Odds in Discriminating "Drug-like" from "Non
                  Drug-like" Compounds},
  journal      = {J. Chem. Inf. Comput. Sci.},
  volume       = {40},
  number       = {6},
  pages        = {1315--1324},
  year         = {2000},
  url          = {https://doi.org/10.1021/ci0003810},
  doi          = {10.1021/CI0003810},
  timestamp    = {Thu, 14 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/FrimurerBNLB00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/annimab/BaldiPAB00,
  author       = {Pierre Baldi and
                  Gianluca Pollastri and
                  Claus A. F. Andersen and
                  S{\o}ren Brunak},
  editor       = {Helge Malmgren and
                  Magnus Borga and
                  Lars Niklasson},
  title        = {Protein {\(\beta\)}-Sheet Partner Prediction by Neural Networks},
  booktitle    = {Artificial Neural Networks in Medicine and Biology, Proceedings of
                  the {ANNIMAB-1} Conference, G{\"{o}}teborg, Sweden, 13-16 May
                  2000},
  series       = {Perspectives in Neural Computing},
  pages        = {3--9},
  publisher    = {Springer},
  year         = {2000},
  url          = {https://doi.org/10.1007/978-1-4471-0513-8\_1},
  doi          = {10.1007/978-1-4471-0513-8\_1},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/annimab/BaldiPAB00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiPAB00,
  author       = {Pierre Baldi and
                  Gianluca Pollastri and
                  Claus A. F. Andersen and
                  S{\o}ren Brunak},
  editor       = {Philip E. Bourne and
                  Michael Gribskov and
                  Russ B. Altman and
                  Nancy Jensen and
                  Debra A. Hope and
                  Thomas Lengauer and
                  Julie C. Mitchell and
                  Eric D. Scheeff and
                  Chris Smith and
                  Shawn Strande and
                  Helge Weissig},
  title        = {Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural
                  Networks},
  booktitle    = {Proceedings of the Eighth International Conference on Intelligent
                  Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
                  Diego, CA, {USA}},
  pages        = {25--36},
  publisher    = {{AAAI}},
  year         = {2000},
  url          = {http://www.aaai.org/Library/ISMB/2000/ismb00-003.php},
  timestamp    = {Thu, 13 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BaldiPAB00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GorodkinSLB99,
  author       = {Jan Gorodkin and
                  Hans Henrik St{\ae}rfeldt and
                  Ole Lund and
                  S{\o}ren Brunak},
  title        = {MatrixPlot: visualizing sequence constraints},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {9},
  pages        = {769--770},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.9.769},
  doi          = {10.1093/BIOINFORMATICS/15.9.769},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GorodkinSLB99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiBCP99,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak and
                  Yves Chauvin and
                  Anders Gorm Pedersen},
  title        = {Structural basis for triplet repeat disorders: a computational analysis},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {11},
  pages        = {918--929},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.11.918},
  doi          = {10.1093/BIOINFORMATICS/15.11.918},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaldiBCP99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiBFSP99,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak and
                  Paolo Frasconi and
                  Giovanni Soda and
                  Gianluca Pollastri},
  title        = {Exploiting the past and the future in protein secondary structure
                  prediction},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {11},
  pages        = {937--946},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.11.937},
  doi          = {10.1093/BIOINFORMATICS/15.11.937},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaldiBFSP99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/PedersenBCB99,
  author       = {Anders Gorm Pedersen and
                  Pierre Baldi and
                  Yves Chauvin and
                  S{\o}ren Brunak},
  title        = {The Biology of Eukaryotic Promoter Prediction - {A} Review},
  journal      = {Comput. Chem.},
  volume       = {23},
  number       = {3-4},
  pages        = {191--207},
  year         = {1999},
  url          = {https://doi.org/10.1016/S0097-8485(99)00015-7},
  doi          = {10.1016/S0097-8485(99)00015-7},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/PedersenBCB99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KreegipuuBB99,
  author       = {Andres Kreegipuu and
                  Nikolaj Blom and
                  S{\o}ren Brunak},
  title        = {PhosphoBase, a database of phosphorylation sites: release 2.0},
  journal      = {Nucleic Acids Res.},
  volume       = {27},
  number       = {1},
  pages        = {237--239},
  year         = {1999},
  url          = {https://doi.org/10.1093/nar/27.1.237},
  doi          = {10.1093/NAR/27.1.237},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KreegipuuBB99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuptaBRBH99,
  author       = {Ramneek Gupta and
                  Hanne Birch and
                  Kristoffer Rapacki and
                  S{\o}ren Brunak and
                  Jan E. Hansen},
  title        = {{O-GLYCBASE} version 4.0: a revised database of O-glycosylated proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {27},
  number       = {1},
  pages        = {370--372},
  year         = {1999},
  url          = {https://doi.org/10.1093/nar/27.1.370},
  doi          = {10.1093/NAR/27.1.370},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GuptaBRBH99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GorodkinLAB99,
  author       = {Jan Gorodkin and
                  Ole Lund and
                  Claus A. F. Andersen and
                  S{\o}ren Brunak},
  editor       = {Thomas Lengauer and
                  Reinhard Schneider and
                  Peer Bork and
                  Douglas L. Brutlag and
                  Janice I. Glasgow and
                  Hans{-}Werner Mewes and
                  Ralf Zimmer},
  title        = {Using Sequence Motifs for Enhanced Neural Network Prediction of Protein
                  Distance Constraints},
  booktitle    = {Proceedings of the Seventh International Conference on Intelligent
                  Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
  pages        = {95--105},
  publisher    = {{AAAI}},
  year         = {1999},
  url          = {http://www.aaai.org/Library/ISMB/1999/ismb99-012.php},
  timestamp    = {Mon, 24 Jun 2013 09:48:15 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/GorodkinLAB99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlomKB98,
  author       = {Nikolaj Blom and
                  Andres Kreegipuu and
                  S{\o}ren Brunak},
  title        = {PhosphoBase: a database of phosphorylation sites},
  journal      = {Nucleic Acids Res.},
  volume       = {26},
  number       = {1},
  pages        = {382--386},
  year         = {1998},
  url          = {https://doi.org/10.1093/nar/26.1.382},
  doi          = {10.1093/NAR/26.1.382},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BlomKB98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HansenLNRB98,
  author       = {Jan E. Hansen and
                  Ole Lund and
                  Jette Nilsson and
                  Kristoffer Rapacki and
                  S{\o}ren Brunak},
  title        = {{O-GLYCBASE} Version 3.0: a revised database of O-glycosylated proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {26},
  number       = {1},
  pages        = {387--389},
  year         = {1998},
  url          = {https://doi.org/10.1093/nar/26.1.387},
  doi          = {10.1093/NAR/26.1.387},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HansenLNRB98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiBCP98,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak and
                  Yves Chauvin and
                  Anders Gorm Pedersen},
  editor       = {Janice I. Glasgow and
                  Timothy G. Littlejohn and
                  Fran{\c{c}}ois Major and
                  Richard H. Lathrop and
                  David Sankoff and
                  Christoph W. Sensen},
  title        = {Computational Applications of {DNA} Structural Scales},
  booktitle    = {Proceedings of the 6th International Conference on Intelligent Systems
                  for Molecular Biology (ISMB-98), Montr{\'{e}}al, Qu{\'{e}}bec,
                  Canada, June 28 - July 1, 1998},
  pages        = {35--42},
  publisher    = {{AAAI}},
  year         = {1998},
  url          = {http://www.aaai.org/Library/ISMB/1998/ismb98-005.php},
  timestamp    = {Thu, 27 Jun 2019 11:28:34 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/BaldiBCP98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GorodkinHBS97,
  author       = {Jan Gorodkin and
                  Laurie J. Heyer and
                  S{\o}ren Brunak and
                  Gary D. Stormo},
  title        = {Displaying the information contents of structural {RNA} alignments:
                  the structure logos},
  journal      = {Comput. Appl. Biosci.},
  volume       = {13},
  number       = {6},
  pages        = {583--586},
  year         = {1997},
  url          = {https://doi.org/10.1093/bioinformatics/13.6.583},
  doi          = {10.1093/BIOINFORMATICS/13.6.583},
  timestamp    = {Fri, 15 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GorodkinHBS97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijns/NielsenEBH97,
  author       = {Henrik Nielsen and
                  Jacob Engelbrecht and
                  S{\o}ren Brunak and
                  Gunnar von Heijne},
  title        = {A Neural Network Method for Identification of Prokaryotic and Eukaryotic
                  Signal Peptides and Prediction of their Cleavage Sites},
  journal      = {Int. J. Neural Syst.},
  volume       = {8},
  number       = {5-6},
  pages        = {581--599},
  year         = {1997},
  url          = {https://doi.org/10.1142/S0129065797000537},
  doi          = {10.1142/S0129065797000537},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ijns/NielsenEBH97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HansenLRB97,
  author       = {Jan E. Hansen and
                  Ole Lund and
                  Kristoffer Rapacki and
                  S{\o}ren Brunak},
  title        = {{O-GLYCBASE} version 2.0: a revised database of O-glycosylated proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {25},
  number       = {1},
  pages        = {278--282},
  year         = {1997},
  url          = {https://doi.org/10.1093/nar/25.1.278},
  doi          = {10.1093/NAR/25.1.278},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HansenLRB97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HansenLNHB96,
  author       = {Jan E. Hansen and
                  Ole Lund and
                  Jens O. Nielsen and
                  John{-}E. S. Hansen and
                  S{\o}ren Brunak},
  title        = {{O-GLYCBASE:} a revised database of O-glycosylated proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {24},
  number       = {1},
  pages        = {248--252},
  year         = {1996},
  url          = {https://doi.org/10.1093/nar/24.1.248},
  doi          = {10.1093/NAR/24.1.248},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HansenLNHB96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PedersenBBC96,
  author       = {Anders Gorm Pedersen and
                  Pierre Baldi and
                  S{\o}ren Brunak and
                  Yves Chauvin},
  editor       = {David J. States and
                  Pankaj Agarwal and
                  Terry Gaasterland and
                  Lawrence Hunter and
                  Randall Smith},
  title        = {Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden
                  Markov Models},
  booktitle    = {Proceedings of the Fourth International Conference on Intelligent
                  Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996},
  pages        = {182--191},
  publisher    = {{AAAI}},
  year         = {1996},
  url          = {http://www.aaai.org/Library/ISMB/1996/ismb96-020.php},
  timestamp    = {Thu, 13 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/PedersenBBC96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiBCEK95,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak and
                  Yves Chauvin and
                  Jacob Engelbrecht and
                  Anders Krogh},
  editor       = {Christopher J. Rawlings and
                  Dominic A. Clark and
                  Russ B. Altman and
                  Lawrence Hunter and
                  Thomas Lengauer and
                  Shoshana J. Wodak},
  title        = {Periodic Sequence Patterns in Human Exons},
  booktitle    = {Proceedings of the Third International Conference on Intelligent Systems
                  for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
  pages        = {30--38},
  publisher    = {{AAAI}},
  year         = {1995},
  url          = {http://www.aaai.org/Library/ISMB/1995/ismb95-004.php},
  timestamp    = {Thu, 13 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BaldiBCEK95.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiBCEK93,
  author       = {Pierre Baldi and
                  S{\o}ren Brunak and
                  Yves Chauvin and
                  Jacob Engelbrecht and
                  Anders Krogh},
  editor       = {Jack D. Cowan and
                  Gerald Tesauro and
                  Joshua Alspector},
  title        = {Hidden Markov Models for Human Genes},
  booktitle    = {Advances in Neural Information Processing Systems 6, [7th {NIPS} Conference,
                  Denver, Colorado, USA, 1993]},
  pages        = {761--768},
  publisher    = {Morgan Kaufmann},
  year         = {1993},
  url          = {http://papers.nips.cc/paper/761-hidden-markov-models-for-human-genes},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/BaldiBCEK93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/FredholmBBBCLP90,
  author       = {Henrik Fredholm and
                  Henrik Bohr and
                  Jakob Bohr and
                  S{\o}ren Brunak and
                  Rodney M. J. Cotterill and
                  Benny Lautrup and
                  Steffen B. Petersen},
  editor       = {Richard Lippmann and
                  John E. Moody and
                  David S. Touretzky},
  title        = {A Novel Approach to Prediction of the 3-Dimensional Structures},
  booktitle    = {Advances in Neural Information Processing Systems 3, {[NIPS} Conference,
                  Denver, Colorado, USA, November 26-29, 1990]},
  pages        = {523--529},
  publisher    = {Morgan Kaufmann},
  year         = {1990},
  url          = {http://papers.nips.cc/paper/380-a-novel-approach-to-prediction-of-the-3-dimensional-structures},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/FredholmBBBCLP90.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/compsys/BohrB89,
  author       = {Henrik Bohr and
                  S{\o}ren Brunak},
  title        = {A Travelling Salesman Approach to Protein Conformation},
  journal      = {Complex Syst.},
  volume       = {3},
  number       = {1},
  year         = {1989},
  url          = {http://www.complex-systems.com/abstracts/v03\_i01\_a02.html},
  timestamp    = {Fri, 11 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/compsys/BohrB89.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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