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BibTeX records: Nadia El-Mabrouk
@article{DBLP:journals/almob/GasconE23, author = {Mathieu Gascon and Nadia El{-}Mabrouk}, title = {On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer}, journal = {Algorithms Mol. Biol.}, volume = {18}, number = {1}, pages = {9}, year = {2023}, url = {https://doi.org/10.1186/s13015-023-00231-5}, doi = {10.1186/S13015-023-00231-5}, timestamp = {Sun, 06 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/almob/GasconE23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/GasconDE22, author = {Mathieu Gascon and Riccardo Dondi and Nadia El{-}Mabrouk}, title = {MUL-tree pruning for consistency and optimal reconciliation - complexity and algorithms}, journal = {Theor. Comput. Sci.}, volume = {937}, pages = {22--38}, year = {2022}, url = {https://doi.org/10.1016/j.tcs.2022.09.027}, doi = {10.1016/J.TCS.2022.09.027}, timestamp = {Tue, 08 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/GasconDE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recombcg/AnselmettiDE22, author = {Yoann Anselmetti and Matt{\'{e}}o Delabre and Nadia El{-}Mabrouk}, editor = {Lingling Jin and Dannie Durand}, title = {Reconciliation with Segmental Duplication, Transfer, Loss and Gain}, booktitle = {Comparative Genomics - 19th International Conference, {RECOMB-CG} 2022, La Jolla, CA, USA, May 20-21, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13234}, pages = {124--145}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-06220-9\_8}, doi = {10.1007/978-3-031-06220-9\_8}, timestamp = {Mon, 06 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/recombcg/AnselmettiDE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GasconE22, author = {Mathieu Gascon and Nadia El{-}Mabrouk}, editor = {Christina Boucher and Sven Rahmann}, title = {Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {5:1--5:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.5}, doi = {10.4230/LIPICS.WABI.2022.5}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GasconE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithms/El-Mabrouk21, author = {Nadia El{-}Mabrouk}, title = {Predicting the Evolution of Syntenies - An Algorithmic Review}, journal = {Algorithms}, volume = {14}, number = {5}, pages = {152}, year = {2021}, url = {https://doi.org/10.3390/a14050152}, doi = {10.3390/A14050152}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/algorithms/El-Mabrouk21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AnselmettiELO21, author = {Yoann Anselmetti and Nadia El{-}Mabrouk and Manuel Lafond and A{\"{\i}}da Ouangraoua}, title = {Gene tree and species tree reconciliation with endosymbiotic gene transfer}, journal = {Bioinform.}, volume = {37}, number = {Supplement}, pages = {120--132}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab328}, doi = {10.1093/BIOINFORMATICS/BTAB328}, timestamp = {Tue, 21 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AnselmettiELO21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwoca/GasconDE21, author = {Mathieu Gascon and Riccardo Dondi and Nadia El{-}Mabrouk}, editor = {Paola Flocchini and Lucia Moura}, title = {Complexity and Algorithms for MUL-Tree Pruning}, booktitle = {Combinatorial Algorithms - 32nd International Workshop, {IWOCA} 2021, Ottawa, ON, Canada, July 5-7, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12757}, pages = {324--339}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-79987-8\_23}, doi = {10.1007/978-3-030-79987-8\_23}, timestamp = {Mon, 12 Jul 2021 09:19:27 +0200}, biburl = {https://dblp.org/rec/conf/iwoca/GasconDE21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/DelabreEHLMNC20, author = {Matt{\'{e}}o Delabre and Nadia El{-}Mabrouk and Katharina T. Huber and Manuel Lafond and Vincent Moulton and Emmanuel Noutahi and Miguel Sautie Castellanos}, title = {Evolution through segmental duplications and losses: a Super-Reconciliation approach}, journal = {Algorithms Mol. Biol.}, volume = {15}, number = {1}, pages = {12}, year = {2020}, url = {https://doi.org/10.1186/s13015-020-00171-4}, doi = {10.1186/S13015-020-00171-4}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/almob/DelabreEHLMNC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/El-MabroukS20, author = {Nadia El{-}Mabrouk and Donna K. Slonim}, title = {{ISMB} 2020 proceedings}, journal = {Bioinform.}, volume = {36}, number = {Supplement-1}, pages = {i1--i2}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa537}, doi = {10.1093/BIOINFORMATICS/BTAA537}, timestamp = {Fri, 25 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/El-MabroukS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcgenomics/BriandDELL20, author = {Samuel Briand and Christophe Dessimoz and Nadia El{-}Mabrouk and Manuel Lafond and Gabriela Lobinska}, title = {A generalized Robinson-Foulds distance for labeled trees}, journal = {{BMC} Genom.}, volume = {21}, number = {{S-10}}, year = {2020}, url = {https://doi.org/10.1186/s12864-020-07011-0}, doi = {10.1186/S12864-020-07011-0}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcgenomics/BriandDELL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BrombergER19, author = {Yana Bromberg and Nadia El{-}Mabrouk and Predrag Radivojac}, title = {{ISMB/ECCB} 2019 Proceedings}, journal = {Bioinform.}, volume = {35}, number = {14}, pages = {i1--i2}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz439}, doi = {10.1093/BIOINFORMATICS/BTZ439}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BrombergER19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/LafondEHM19, author = {Manuel Lafond and Nadia El{-}Mabrouk and Katharina T. Huber and Vincent Moulton}, title = {The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics}, journal = {Theor. Comput. Sci.}, volume = {760}, pages = {15--34}, year = {2019}, url = {https://doi.org/10.1016/j.tcs.2018.08.006}, doi = {10.1016/J.TCS.2018.08.006}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/LafondEHM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcgenomics/NoutahiE18, author = {Emmanuel Noutahi and Nadia El{-}Mabrouk}, title = {{GATC:} a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution}, journal = {{BMC} Genom.}, volume = {19}, number = {{S2}}, year = {2018}, url = {https://doi.org/10.1186/s12864-018-4455-x}, doi = {10.1186/S12864-018-4455-X}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcgenomics/NoutahiE18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LafondCEO18, author = {Manuel Lafond and C{\'{e}}dric Chauve and Nadia El{-}Mabrouk and A{\"{\i}}da Ouangraoua}, title = {Gene Tree Construction and Correction Using SuperTree and Reconciliation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {15}, number = {5}, pages = {1560--1570}, year = {2018}, url = {https://doi.org/10.1109/TCBB.2017.2720581}, doi = {10.1109/TCBB.2017.2720581}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LafondCEO18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cocoon/NojgaardEMWH18, author = {Nikolai N{\o}jgaard and Nadia El{-}Mabrouk and Daniel Merkle and Nicolas Wieseke and Marc Hellmuth}, editor = {Lusheng Wang and Daming Zhu}, title = {Partial Homology Relations - Satisfiability in Terms of Di-Cographs}, booktitle = {Computing and Combinatorics - 24th International Conference, {COCOON} 2018, Qing Dao, China, July 2-4, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10976}, pages = {403--415}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-94776-1\_34}, doi = {10.1007/978-3-319-94776-1\_34}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cocoon/NojgaardEMWH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/DelabreEHLMNC18, author = {Matt{\'{e}}o Delabre and Nadia El{-}Mabrouk and Katharina T. Huber and Manuel Lafond and Vincent Moulton and Emmanuel Noutahi and Miguel Sautie Castellanos}, editor = {Mathieu Blanchette and A{\"{\i}}da Ouangraoua}, title = {Reconstructing the History of Syntenies Through Super-Reconciliation}, booktitle = {Comparative Genomics - 16th International Conference, {RECOMB-CG} 2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11183}, pages = {179--195}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00834-5\_10}, doi = {10.1007/978-3-030-00834-5\_10}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/DelabreEHLMNC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1803-05866, author = {Manuel Lafond and Nadia El{-}Mabrouk and Katharina T. Huber and Vincent Moulton}, title = {The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics}, journal = {CoRR}, volume = {abs/1803.05866}, year = {2018}, url = {http://arxiv.org/abs/1803.05866}, eprinttype = {arXiv}, eprint = {1803.05866}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1803-05866.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/DondiLE17, author = {Riccardo Dondi and Manuel Lafond and Nadia El{-}Mabrouk}, title = {Approximating the correction of weighted and unweighted orthology and paralogy relations}, journal = {Algorithms Mol. Biol.}, volume = {12}, number = {1}, pages = {4:1--4:15}, year = {2017}, url = {https://doi.org/10.1186/s13015-017-0096-x}, doi = {10.1186/S13015-017-0096-X}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/DondiLE17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NoutahiCBLE17, author = {Emmanuel Noutahi and Virginie Calderon and Mathieu Blanchette and B. Franz Lang and Nadia El{-}Mabrouk}, title = {CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes}, journal = {Bioinform.}, volume = {33}, number = {21}, pages = {3331--3339}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx421}, doi = {10.1093/BIOINFORMATICS/BTX421}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NoutahiCBLE17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/El-MabroukO17, author = {Nadia El{-}Mabrouk and A{\"{\i}}da Ouangraoua}, editor = {Russell Schwartz and Knut Reinert}, title = {A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {8:1--8:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.8}, doi = {10.4230/LIPICS.WABI.2017.8}, timestamp = {Tue, 11 Feb 2020 15:52:14 +0100}, biburl = {https://dblp.org/rec/conf/wabi/El-MabroukO17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1711-00504, author = {Nikolai N{\o}jgaard and Nadia El{-}Mabrouk and Daniel Merkle and Nicolas Wieseke and Marc Hellmuth}, title = {Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs}, journal = {CoRR}, volume = {abs/1711.00504}, year = {2017}, url = {http://arxiv.org/abs/1711.00504}, eprinttype = {arXiv}, eprint = {1711.00504}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1711-00504.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/LafondDE16, author = {Manuel Lafond and Riccardo Dondi and Nadia El{-}Mabrouk}, title = {The link between orthology relations and gene trees: a correction perspective}, journal = {Algorithms Mol. Biol.}, volume = {11}, pages = {4}, year = {2016}, url = {https://doi.org/10.1186/s13015-016-0067-7}, doi = {10.1186/S13015-016-0067-7}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/LafondDE16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/LafondNE16, author = {Manuel Lafond and Emmanuel Noutahi and Nadia El{-}Mabrouk}, editor = {Roberto Grossi and Moshe Lewenstein}, title = {Efficient Non-Binary Gene Tree Resolution with Weighted Reconciliation Cost}, booktitle = {27th Annual Symposium on Combinatorial Pattern Matching, {CPM} 2016, June 27-29, 2016, Tel Aviv, Israel}, series = {LIPIcs}, volume = {54}, pages = {14:1--14:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2016}, url = {https://doi.org/10.4230/LIPIcs.CPM.2016.14}, doi = {10.4230/LIPICS.CPM.2016.14}, timestamp = {Tue, 11 Feb 2020 15:52:14 +0100}, biburl = {https://dblp.org/rec/conf/cpm/LafondNE16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DondiEL16, author = {Riccardo Dondi and Nadia El{-}Mabrouk and Manuel Lafond}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {121--136}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_10}, doi = {10.1007/978-3-319-43681-4\_10}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DondiEL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/LafondCEO16, author = {Manuel Lafond and C{\'{e}}dric Chauve and Nadia El{-}Mabrouk and A{\"{\i}}da Ouangraoua}, title = {Gene Tree Construction and Correction using SuperTree and Reconciliation}, journal = {CoRR}, volume = {abs/1610.05068}, year = {2016}, url = {http://arxiv.org/abs/1610.05068}, eprinttype = {arXiv}, eprint = {1610.05068}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/LafondCEO16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LafondOE15, author = {Manuel Lafond and A{\"{\i}}da Ouangraoua and Nadia El{-}Mabrouk}, title = {Reconstructing a SuperGeneTree minimizing reconciliation}, journal = {{BMC} Bioinform.}, volume = {16}, number = {{S14}}, pages = {S4}, year = {2015}, url = {https://doi.org/10.1186/1471-2105-16-s14-s4}, doi = {10.1186/1471-2105-16-S14-S4}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LafondOE15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LafondE15, author = {Manuel Lafond and Nadia El{-}Mabrouk}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Orthology Relation and Gene Tree Correction: Complexity Results}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {66--79}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_5}, doi = {10.1007/978-3-662-48221-6\_5}, timestamp = {Thu, 14 Oct 2021 10:34:16 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LafondE15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LafondCDE14, author = {Manuel Lafond and C{\'{e}}dric Chauve and Riccardo Dondi and Nadia El{-}Mabrouk}, title = {Polytomy refinement for the correction of dubious duplications in gene trees}, journal = {Bioinform.}, volume = {30}, number = {17}, pages = {519--526}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu463}, doi = {10.1093/BIOINFORMATICS/BTU463}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LafondCDE14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jda/DondiES14, author = {Riccardo Dondi and Nadia El{-}Mabrouk and Krister M. Swenson}, title = {Gene tree correction for reconciliation and species tree inference: Complexity and algorithms}, journal = {J. Discrete Algorithms}, volume = {25}, pages = {51--65}, year = {2014}, url = {https://doi.org/10.1016/j.jda.2013.06.001}, doi = {10.1016/J.JDA.2013.06.001}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jda/DondiES14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LafondSSTE13, author = {Manuel Lafond and Magali Semeria and Krister M. Swenson and Eric Tannier and Nadia El{-}Mabrouk}, title = {Gene tree correction guided by orthology}, journal = {{BMC} Bioinform.}, volume = {14}, number = {{S-15}}, pages = {S5}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-S15-S5}, doi = {10.1186/1471-2105-14-S15-S5}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LafondSSTE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HollowaySAE13, author = {Patrick Holloway and Krister M. Swenson and David H. Ardell and Nadia El{-}Mabrouk}, title = {Ancestral Genome Organization: An Alignment Approach}, journal = {J. Comput. Biol.}, volume = {20}, number = {4}, pages = {280--295}, year = {2013}, url = {https://doi.org/10.1089/cmb.2012.0292}, doi = {10.1089/CMB.2012.0292}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HollowaySAE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cie/DondiE13, author = {Riccardo Dondi and Nadia El{-}Mabrouk}, editor = {Paola Bonizzoni and Vasco Brattka and Benedikt L{\"{o}}we}, title = {Aligning and Labeling Genomes under the Duplication-Loss Model}, booktitle = {The Nature of Computation. Logic, Algorithms, Applications - 9th Conference on Computability in Europe, CiE 2013, Milan, Italy, July 1-5, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7921}, pages = {97--107}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-39053-1\_11}, doi = {10.1007/978-3-642-39053-1\_11}, timestamp = {Tue, 14 May 2019 10:00:41 +0200}, biburl = {https://dblp.org/rec/conf/cie/DondiE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/lata/BenzaidDE13, author = {Billel Benzaid and Riccardo Dondi and Nadia El{-}Mabrouk}, editor = {Adrian{-}Horia Dediu and Carlos Mart{\'{\i}}n{-}Vide and Bianca Truthe}, title = {Duplication-Loss Genome Alignment: Complexity and Algorithm}, booktitle = {Language and Automata Theory and Applications - 7th International Conference, {LATA} 2013, Bilbao, Spain, April 2-5, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7810}, pages = {116--127}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-37064-9\_12}, doi = {10.1007/978-3-642-37064-9\_12}, timestamp = {Mon, 16 Sep 2019 15:27:03 +0200}, biburl = {https://dblp.org/rec/conf/lata/BenzaidDE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/daglib/p/ChauveEGST13, author = {C{\'{e}}dric Chauve and Nadia El{-}Mabrouk and Laurent Gu{\'{e}}guen and Magali Semeria and Eric Tannier}, editor = {C{\'{e}}dric Chauve and Nadia El{-}Mabrouk and Eric Tannier}, title = {Duplication, Rearrangement and Reconciliation: {A} Follow-Up 13 Years Later}, booktitle = {Models and Algorithms for Genome Evolution}, pages = {47--62}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-1-4471-5298-9\_4}, doi = {10.1007/978-1-4471-5298-9\_4}, timestamp = {Thu, 03 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/books/daglib/p/ChauveEGST13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/daglib/p/LafondSE13, author = {Manuel Lafond and Krister M. Swenson and Nadia El{-}Mabrouk}, editor = {C{\'{e}}dric Chauve and Nadia El{-}Mabrouk and Eric Tannier}, title = {Error Detection and Correction of Gene Trees}, booktitle = {Models and Algorithms for Genome Evolution}, pages = {261--285}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-1-4471-5298-9\_12}, doi = {10.1007/978-1-4471-5298-9\_12}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/daglib/p/LafondSE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/daglib/0032286, editor = {C{\'{e}}dric Chauve and Nadia El{-}Mabrouk and Eric Tannier}, title = {Models and Algorithms for Genome Evolution}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-1-4471-5298-9}, doi = {10.1007/978-1-4471-5298-9}, isbn = {978-1-4471-5297-2}, timestamp = {Tue, 16 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/daglib/0032286.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/SwensonDE12, author = {Krister M. Swenson and Andrea Doroftei and Nadia El{-}Mabrouk}, title = {Gene tree correction for reconciliation and species tree inference}, journal = {Algorithms Mol. Biol.}, volume = {7}, pages = {31}, year = {2012}, url = {https://doi.org/10.1186/1748-7188-7-31}, doi = {10.1186/1748-7188-7-31}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/SwensonDE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SwensonE12, author = {Krister M. Swenson and Nadia El{-}Mabrouk}, title = {Gene trees and species trees: irreconcilable differences}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-19}}, pages = {S15}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S19-S15}, doi = {10.1186/1471-2105-13-S19-S15}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SwensonE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GagnonBE12, author = {Yves Gagnon and Mathieu Blanchette and Nadia El{-}Mabrouk}, title = {A flexible ancestral genome reconstruction method based on gapped adjacencies}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-19}}, pages = {S4}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S19-S4}, doi = {10.1186/1471-2105-13-S19-S4}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GagnonBE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/DondiE12, author = {Riccardo Dondi and Nadia El{-}Mabrouk}, editor = {Juha K{\"{a}}rkk{\"{a}}inen and Jens Stoye}, title = {Minimum Leaf Removal for Reconciliation: Complexity and Algorithms}, booktitle = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012, Helsinki, Finland, July 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7354}, pages = {399--412}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-31265-6\_32}, doi = {10.1007/978-3-642-31265-6\_32}, timestamp = {Tue, 21 Mar 2023 21:02:12 +0100}, biburl = {https://dblp.org/rec/conf/cpm/DondiE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/HollowaySAE12, author = {Patrick Holloway and Krister M. Swenson and David H. Ardell and Nadia El{-}Mabrouk}, editor = {Benny Chor}, title = {Evolution of Genome Organization by Duplication and Loss: An Alignment Approach}, booktitle = {Research in Computational Molecular Biology - 16th Annual International Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7262}, pages = {94--112}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-29627-7\_10}, doi = {10.1007/978-3-642-29627-7\_10}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/HollowaySAE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LafondSE12, author = {Manuel Lafond and Krister M. Swenson and Nadia El{-}Mabrouk}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {An Optimal Reconciliation Algorithm for Gene Trees with Polytomies}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {106--122}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_9}, doi = {10.1007/978-3-642-33122-0\_9}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LafondSE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1206-1877, author = {Riccardo Dondi and Nadia El{-}Mabrouk}, title = {On the Complexity of Minimum Labeling Alignment of Two Genomes}, journal = {CoRR}, volume = {abs/1206.1877}, year = {2012}, url = {http://arxiv.org/abs/1206.1877}, eprinttype = {arXiv}, eprint = {1206.1877}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1206-1877.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SavardBE11, author = {Olivier Tremblay Savard and Denis Bertrand and Nadia El{-}Mabrouk}, title = {Evolution of orthologous tandemly arrayed gene clusters}, journal = {{BMC} Bioinform.}, volume = {12}, number = {{S-9}}, pages = {S2}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-S9-S2}, doi = {10.1186/1471-2105-12-S9-S2}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SavardBE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/SavardGBE11, author = {Olivier Tremblay Savard and Yves Gagnon and Denis Bertrand and Nadia El{-}Mabrouk}, title = {Genome Halving and Double Distance with Losses}, journal = {J. Comput. Biol.}, volume = {18}, number = {9}, pages = {1185--1199}, year = {2011}, url = {https://doi.org/10.1089/cmb.2011.0136}, doi = {10.1089/CMB.2011.0136}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/SavardGBE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DorofteiE11, author = {Andrea Doroftei and Nadia El{-}Mabrouk}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Removing Noise from Gene Trees}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {76--91}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_8}, doi = {10.1007/978-3-642-23038-7\_8}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DorofteiE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/GagnonSBE10, author = {Yves Gagnon and Olivier Tremblay Savard and Denis Bertrand and Nadia El{-}Mabrouk}, editor = {Eric Tannier}, title = {Advances on Genome Duplication Distances}, booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa, Canada, October 9-11, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6398}, pages = {25--38}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-16181-0\_3}, doi = {10.1007/978-3-642-16181-0\_3}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/GagnonSBE10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BertrandGBE10, author = {Denis Bertrand and Yves Gagnon and Mathieu Blanchette and Nadia El{-}Mabrouk}, editor = {Vincent Moulton and Mona Singh}, title = {Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {78--89}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_7}, doi = {10.1007/978-3-642-15294-8\_7}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BertrandGBE10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BertrandBE09, author = {Denis Bertrand and Mathieu Blanchette and Nadia El{-}Mabrouk}, title = {Genetic Map Refinement Using a Comparative Genomic Approach}, journal = {J. Comput. Biol.}, volume = {16}, number = {10}, pages = {1475--1486}, year = {2009}, url = {https://doi.org/10.1089/cmb.2009.0094}, doi = {10.1089/CMB.2009.0094}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BertrandBE09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/ChauveE09, author = {C{\'{e}}dric Chauve and Nadia El{-}Mabrouk}, editor = {Serafim Batzoglou}, title = {New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees}, booktitle = {Research in Computational Molecular Biology, 13th Annual International Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5541}, pages = {46--58}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02008-7\_4}, doi = {10.1007/978-3-642-02008-7\_4}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/ChauveE09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ChauveDE08, author = {C{\'{e}}dric Chauve and Jean{-}Philippe Doyon and Nadia El{-}Mabrouk}, title = {Gene Family Evolution by Duplication, Speciation, and Loss}, journal = {J. Comput. Biol.}, volume = {15}, number = {8}, pages = {1043--1062}, year = {2008}, url = {https://doi.org/10.1089/cmb.2008.0054}, doi = {10.1089/CMB.2008.0054}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ChauveDE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BertrandLE08, author = {Denis Bertrand and Mathieu Lajoie and Nadia El{-}Mabrouk}, title = {Inferring Ancestral Gene Orders for a Family of Tandemly Arrayed Genes}, journal = {J. Comput. Biol.}, volume = {15}, number = {8}, pages = {1063--1077}, year = {2008}, url = {https://doi.org/10.1089/cmb.2008.0025}, doi = {10.1089/CMB.2008.0025}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BertrandLE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/BertrandBE08, author = {Denis Bertrand and Mathieu Blanchette and Nadia El{-}Mabrouk}, editor = {Craig E. Nelson and St{\'{e}}phane Vialette}, title = {A Phylogenetic Approach to Genetic Map Refinement}, booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris, France, October 13-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5267}, pages = {198--210}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87989-3\_15}, doi = {10.1007/978-3-540-87989-3\_15}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/BertrandBE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BlinBHGBE07, author = {Guillaume Blin and Eric Blais and Danny Hermelin and Pierre Guillon and Mathieu Blanchette and Nadia El{-}Mabrouk}, title = {Gene Maps Linearization Using Genomic Rearrangement Distances}, journal = {J. Comput. Biol.}, volume = {14}, number = {4}, pages = {394--407}, year = {2007}, url = {https://doi.org/10.1089/cmb.2007.A002}, doi = {10.1089/CMB.2007.A002}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BlinBHGBE07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/LajoieBEG07, author = {Mathieu Lajoie and Denis Bertrand and Nadia El{-}Mabrouk and Olivier Gascuel}, title = {Duplication and Inversion History of a Tandemly Repeated Genes Family}, journal = {J. Comput. Biol.}, volume = {14}, number = {4}, pages = {462--478}, year = {2007}, url = {https://doi.org/10.1089/cmb.2007.A007}, doi = {10.1089/CMB.2007.A007}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/LajoieBEG07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cocoon/DuchesneGE07, author = {Jean{-}Eudes Duchesne and Mathieu Giraud and Nadia El{-}Mabrouk}, editor = {Guohui Lin}, title = {Seed-Based Exclusion Method for Non-coding {RNA} Gene Search}, booktitle = {Computing and Combinatorics, 13th Annual International Conference, {COCOON} 2007, Banff, Canada, July 16-19, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4598}, pages = {27--39}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-73545-8\_6}, doi = {10.1007/978-3-540-73545-8\_6}, timestamp = {Tue, 14 May 2019 10:00:35 +0200}, biburl = {https://dblp.org/rec/conf/cocoon/DuchesneGE07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/ChauveDE07, author = {C{\'{e}}dric Chauve and Jean{-}Philippe Doyon and Nadia El{-}Mabrouk}, editor = {Glenn Tesler and Dannie Durand}, title = {Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract)}, booktitle = {Comparative Genomics, {RECOMB} 2007 International Workshop, {RECOMB-CG} 2007, San Diego, CA, USA, September 16-18, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4751}, pages = {45--57}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74960-8\_4}, doi = {10.1007/978-3-540-74960-8\_4}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/ChauveDE07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/LajoieBE07, author = {Mathieu Lajoie and Denis Bertrand and Nadia El{-}Mabrouk}, editor = {Glenn Tesler and Dannie Durand}, title = {Evolution of Tandemly Arrayed Genes in Multiple Species}, booktitle = {Comparative Genomics, {RECOMB} 2007 International Workshop, {RECOMB-CG} 2007, San Diego, CA, USA, September 16-18, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4751}, pages = {96--109}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74960-8\_8}, doi = {10.1007/978-3-540-74960-8\_8}, timestamp = {Mon, 13 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/LajoieBE07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/ox/07/El-Mabrouk07, author = {Nadia El{-}Mabrouk}, editor = {Olivier Gascuel}, title = {Genome rearrangement with gene families}, booktitle = {Mathematics of Evolution and Phylogeny}, publisher = {Oxford University Press}, year = {2007}, timestamp = {Wed, 06 May 2020 15:31:00 +0200}, biburl = {https://dblp.org/rec/books/ox/07/El-Mabrouk07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/BlinBGBE06, author = {Guillaume Blin and Eric Blais and Pierre Guillon and Mathieu Blanchette and Nadia El{-}Mabrouk}, editor = {Guillaume Bourque and Nadia El{-}Mabrouk}, title = {Inferring Gene Orders from Gene Maps Using the Breakpoint Distance}, booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG} 2006, Montreal, Canada, September 24-26, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4205}, pages = {99--112}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11864127\_9}, doi = {10.1007/11864127\_9}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/BlinBGBE06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/BertrandLEG06, author = {Denis Bertrand and Mathieu Lajoie and Nadia El{-}Mabrouk and Olivier Gascuel}, editor = {Guillaume Bourque and Nadia El{-}Mabrouk}, title = {Evolution of Tandemly Repeated Sequences Through Duplication and Inversion}, booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG} 2006, Montreal, Canada, September 24-26, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4205}, pages = {129--140}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11864127\_11}, doi = {10.1007/11864127\_11}, timestamp = {Mon, 13 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/BertrandLEG06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/recomb/2006rcg, editor = {Guillaume Bourque and Nadia El{-}Mabrouk}, title = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG} 2006, Montreal, Canada, September 24-26, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4205}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11864127}, doi = {10.1007/11864127}, isbn = {3-540-44529-3}, timestamp = {Mon, 13 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/2006rcg.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/El-MabroukRDLL05, author = {Nadia El{-}Mabrouk and Mathieu Raffinot and Jean{-}Eudes Duchesne and Mathieu Lajoie and Nicolas Luc}, title = {Approximate Matching of Structured Motifs in Dna Sequences}, journal = {J. Bioinform. Comput. Biol.}, volume = {3}, number = {2}, pages = {317--342}, year = {2005}, url = {https://doi.org/10.1142/S0219720005001065}, doi = {10.1142/S0219720005001065}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/El-MabroukRDLL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/LajoieE05, author = {Mathieu Lajoie and Nadia El{-}Mabrouk}, title = {Recovering haplotype structure through recombination and gene conversion}, booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain, September 28 - October 1, 2005}, pages = {179}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti1128}, doi = {10.1093/BIOINFORMATICS/BTI1128}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/eccb/LajoieE05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/BourqueYE05, author = {Guillaume Bourque and Yasmine Yacef and Nadia El{-}Mabrouk}, editor = {Aoife McLysaght and Daniel H. Huson}, title = {Maximizing Synteny Blocks to Identify Ancestral Homologs}, booktitle = {Comparative Genomics, {RECOMB} 2005 International Workshop, {RCG} 2005, Dublin, Ireland, September 18-20, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3678}, pages = {21--34}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11554714\_3}, doi = {10.1007/11554714\_3}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/BourqueYE05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/El-MabroukL04, author = {Nadia El{-}Mabrouk and Damian Labuda}, title = {Haplotypes histories as pathways of recombinations}, journal = {Bioinform.}, volume = {20}, number = {12}, pages = {1836--1841}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth148}, doi = {10.1093/BIOINFORMATICS/BTH148}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/El-MabroukL04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/El-Mabrouk04, author = {Nadia El{-}Mabrouk}, title = {Deriving Haplotypes through Recombination and Gene Conversion Pathways}, journal = {J. Bioinform. Comput. Biol.}, volume = {2}, number = {2}, pages = {241--256}, year = {2004}, url = {https://doi.org/10.1142/S0219720004000545}, doi = {10.1142/S0219720004000545}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/El-Mabrouk04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/SankoffLTME04, author = {David Sankoff and Jean{-}Fran{\c{c}}ois Lefebvre and Elisabeth R. M. Tillier and Adrian Maler and Nadia El{-}Mabrouk}, editor = {Jens Lagergren}, title = {The Distribution of Inversion Lengths in Bacteria}, booktitle = {Comparative Genomics, {RECOMB} 2004 International Workshop, {RCG} 2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3388}, pages = {97--108}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-32290-0\_8}, doi = {10.1007/978-3-540-32290-0\_8}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/SankoffLTME04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/siamcomp/El-MabroukS03, author = {Nadia El{-}Mabrouk and David Sankoff}, title = {The Reconstruction of Doubled Genomes}, journal = {{SIAM} J. Comput.}, volume = {32}, number = {3}, pages = {754--792}, year = {2003}, url = {https://doi.org/10.1137/S0097539700377177}, doi = {10.1137/S0097539700377177}, timestamp = {Sat, 27 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/siamcomp/El-MabroukS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/LefebvreETS03, author = {Jean{-}Fran{\c{c}}ois Lefebvre and Nadia El{-}Mabrouk and Elisabeth R. M. Tillier and David Sankoff}, title = {Detection and validation of single gene inversions}, booktitle = {Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia}, pages = {190--196}, year = {2003}, url = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i190?etoc}, timestamp = {Tue, 15 Jul 2003 14:30:05 +0200}, biburl = {https://dblp.org/rec/conf/ismb/LefebvreETS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcss/El-Mabrouk02, author = {Nadia El{-}Mabrouk}, title = {Reconstructing an ancestral genome using minimum segments duplications and reversals}, journal = {J. Comput. Syst. Sci.}, volume = {65}, number = {3}, pages = {442--464}, year = {2002}, url = {https://doi.org/10.1016/S0022-0000(02)00003-X}, doi = {10.1016/S0022-0000(02)00003-X}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcss/El-Mabrouk02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/El-MabroukR02, author = {Nadia El{-}Mabrouk and Mathieu Raffinot}, editor = {Gene Myers and Sridhar Hannenhalli and David Sankoff and Sorin Istrail and Pavel A. Pevzner and Michael S. Waterman}, title = {Approximate matching of secondary structures}, booktitle = {Proceedings of the Sixth Annual International Conference on Computational Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002}, pages = {156--164}, publisher = {{ACM}}, year = {2002}, url = {https://doi.org/10.1145/565196.565216}, doi = {10.1145/565196.565216}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/El-MabroukR02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AjanaLTE02, author = {Yasmine Ajana and Jean{-}Fran{\c{c}}ois Lefebvre and Elisabeth R. M. Tillier and Nadia El{-}Mabrouk}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {300--315}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_23}, doi = {10.1007/3-540-45784-4\_23}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AjanaLTE02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/El-Mabrouk00, author = {Nadia El{-}Mabrouk}, editor = {Raffaele Giancarlo and David Sankoff}, title = {Genome Rearrangement by Reversals and Insertions/Deletions of Contiguous Segments}, booktitle = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000, Montreal, Canada, June 21-23, 2000, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1848}, pages = {222--234}, publisher = {Springer}, year = {2000}, url = {https://doi.org/10.1007/3-540-45123-4\_20}, doi = {10.1007/3-540-45123-4\_20}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/El-Mabrouk00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/El-MabroukS99, author = {Nadia El{-}Mabrouk and David Sankoff}, editor = {Maxime Crochemore and Mike Paterson}, title = {Hybridization and Genome Rearrangement}, booktitle = {Combinatorial Pattern Matching, 10th Annual Symposium, {CPM} 99, Warwick University, UK, July 22-24, 1999, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1645}, pages = {78--87}, publisher = {Springer}, year = {1999}, url = {https://doi.org/10.1007/3-540-48452-3\_6}, doi = {10.1007/3-540-48452-3\_6}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/El-MabroukS99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/El-MabroukBS99, author = {Nadia El{-}Mabrouk and David Bryant and David Sankoff}, editor = {Sorin Istrail and Pavel A. Pevzner and Michael S. Waterman}, title = {Reconstructing the pre-doubling genome}, booktitle = {Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April 11-14, 1999}, pages = {154--163}, publisher = {{ACM}}, year = {1999}, url = {https://doi.org/10.1145/299432.299475}, doi = {10.1145/299432.299475}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/El-MabroukBS99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/El-MabroukNS98, author = {Nadia El{-}Mabrouk and Joseph H. Nadeau and David Sankoff}, editor = {Martin Farach{-}Colton}, title = {Genome Halving}, booktitle = {Combinatorial Pattern Matching, 9th Annual Symposium, {CPM} 98, Piscataway, New Jersey, USA, July 20-22, 1998, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1448}, pages = {235--250}, publisher = {Springer}, year = {1998}, url = {https://doi.org/10.1007/BFb0030793}, doi = {10.1007/BFB0030793}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/El-MabroukNS98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/El-MabroukC96, author = {Nadia El{-}Mabrouk and Maxime Crochemore}, editor = {Daniel S. Hirschberg and Eugene W. Myers}, title = {Boyer-Moore Strategy to Efficient Approximate String Matching}, booktitle = {Combinatorial Pattern Matching, 7th Annual Symposium, {CPM} 96, Laguna Beach, California, USA, June 10-12, 1996, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1075}, pages = {24--38}, publisher = {Springer}, year = {1996}, url = {https://doi.org/10.1007/3-540-61258-0\_2}, doi = {10.1007/3-540-61258-0\_2}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/El-MabroukC96.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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