BibTeX records: Michael Gribskov

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@article{DBLP:journals/bib/LuoGW22,
  author       = {Liheng Luo and
                  Michael Gribskov and
                  Sufang Wang},
  title        = {Bibliometric review of ATAC-Seq and its application in gene expression},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {3},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbac061},
  doi          = {10.1093/BIB/BBAC061},
  timestamp    = {Tue, 16 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LuoGW22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SunWHPRMGY20,
  author       = {Xiangying Sun and
                  Zhezhen Wang and
                  Johnathon M. Hall and
                  Carlos Perez{-}Cervantes and
                  Alexander J. Ruthenburg and
                  Ivan P. Moskowitz and
                  Michael Gribskov and
                  Xinan Holly Yang},
  title        = {Chromatin-enriched RNAs mark active and repressive cis-regulation:
                  An analysis of nuclear RNA-seq},
  journal      = {PLoS Comput. Biol.},
  volume       = {16},
  number       = {2},
  year         = {2020},
  url          = {https://doi.org/10.1371/journal.pcbi.1007119},
  doi          = {10.1371/JOURNAL.PCBI.1007119},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/SunWHPRMGY20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangG19,
  author       = {Junhui Wang and
                  Michael Gribskov},
  title        = {IRESpy: an XGBoost model for prediction of internal ribosome entry
                  sites},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {409:1--409:15},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-2999-7},
  doi          = {10.1186/S12859-019-2999-7},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/WangG19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuG19,
  author       = {Mengmeng Zhu and
                  Michael Gribskov},
  title        = {MiPepid: MicroPeptide identification tool using machine learning},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {559:1--559:11},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-3033-9},
  doi          = {10.1186/S12859-019-3033-9},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ZhuG19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:reference/bioinf/2019-1,
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  1},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://www.sciencedirect.com/referencework/9780128114322/encyclopedia-of-bioinformatics-and-computational-biology\#book-description},
  isbn         = {978-0-12-811432-2},
  timestamp    = {Wed, 04 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/2019-1.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:reference/bioinf/2019-2,
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  2},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://www.sciencedirect.com/referencework/9780128114322/encyclopedia-of-bioinformatics-and-computational-biology\#book-description},
  isbn         = {978-0-12-811432-2},
  timestamp    = {Wed, 04 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/2019-2.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:reference/bioinf/2019-3,
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  3},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://www.sciencedirect.com/referencework/9780128114322/encyclopedia-of-bioinformatics-and-computational-biology\#book-description},
  isbn         = {978-0-12-811432-2},
  timestamp    = {Wed, 04 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/2019-3.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/SunG19,
  author       = {Xiangying Sun and
                  Michael Gribskov},
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {MicroRNA and lncRNA Databases and Analysis},
  booktitle    = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  2},
  pages        = {165--170},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://doi.org/10.1016/b978-0-12-809633-8.20220-3},
  doi          = {10.1016/B978-0-12-809633-8.20220-3},
  timestamp    = {Sat, 07 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/SunG19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/Gribskov19,
  author       = {Michael Gribskov},
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Identification of Sequence Patterns, Motifs and Domains},
  booktitle    = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  3},
  pages        = {332--340},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://doi.org/10.1016/b978-0-12-809633-8.20498-6},
  doi          = {10.1016/B978-0-12-809633-8.20498-6},
  timestamp    = {Sat, 07 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/Gribskov19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dpd/MershadMOTGA18,
  author       = {Khaleel Mershad and
                  Qutaibah M. Malluhi and
                  Mourad Ouzzani and
                  MingJie Tang and
                  Michael Gribskov and
                  Walid G. Aref},
  title        = {{AUDIT:} approving and tracking updates with dependencies in collaborative
                  databases},
  journal      = {Distributed Parallel Databases},
  volume       = {36},
  number       = {1},
  pages        = {81--119},
  year         = {2018},
  url          = {https://doi.org/10.1007/s10619-017-7208-y},
  doi          = {10.1007/S10619-017-7208-Y},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dpd/MershadMOTGA18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dpd/MershadMOTGAP18,
  author       = {Khaleel Mershad and
                  Qutaibah M. Malluhi and
                  Mourad Ouzzani and
                  MingJie Tang and
                  Michael Gribskov and
                  Walid G. Aref and
                  Deo Prakash},
  title        = {{COACT:} a query interface language for collaborative databases},
  journal      = {Distributed Parallel Databases},
  volume       = {36},
  number       = {1},
  pages        = {121--151},
  year         = {2018},
  url          = {https://doi.org/10.1007/s10619-017-7213-1},
  doi          = {10.1007/S10619-017-7213-1},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dpd/MershadMOTGAP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangG17,
  author       = {Sufang Wang and
                  Michael Gribskov},
  title        = {Comprehensive evaluation of de novo transcriptome assembly programs
                  and their effects on differential gene expression analysis},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {3},
  pages        = {327--333},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btw625},
  doi          = {10.1093/BIOINFORMATICS/BTW625},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangG17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangKGG17,
  author       = {Biaobin Jiang and
                  Kyle Kloster and
                  David F. Gleich and
                  Michael Gribskov},
  title        = {AptRank: an adaptive PageRank model for protein function prediction
                  on bi-relational graphs},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {12},
  pages        = {1829--1836},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx029},
  doi          = {10.1093/BIOINFORMATICS/BTX029},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JiangKGG17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengYZWGQ17,
  author       = {Hao Peng and
                  Yifan Yang and
                  Shandian Zhe and
                  Jian Wang and
                  Michael Gribskov and
                  Yuan Qi},
  title        = {DEIsoM: a hierarchical Bayesian model for identifying differentially
                  expressed isoforms using biological replicates},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {19},
  pages        = {3018--3027},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx357},
  doi          = {10.1093/BIOINFORMATICS/BTX357},
  timestamp    = {Thu, 03 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PengYZWGQ17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/AndinoBGS17,
  author       = {Gladys K. Andino and
                  Marisa Brazil and
                  Michael Gribskov and
                  Preston M. Smith},
  editor       = {David L. Hart and
                  Maytal Dahan},
  title        = {Advancing the Representation of Women in {HPC} at Purdue University},
  booktitle    = {Proceedings of the Practice and Experience in Advanced Research Computing
                  2017: Sustainability, Success and Impact, {PEARC} 2017, New Orleans,
                  LA, USA, July 9-13, 2017},
  pages        = {56:1--56:3},
  publisher    = {{ACM}},
  year         = {2017},
  url          = {https://doi.org/10.1145/3093338.3104175},
  doi          = {10.1145/3093338.3104175},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/xsede/AndinoBGS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangGHP16,
  author       = {Sufang Wang and
                  Michael Gribskov and
                  Tony R. Hazbun and
                  Pete E. Pascuzzi},
  title        = {CellMiner Companion: an interactive web application to explore CellMiner
                  {NCI-60} data},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {15},
  pages        = {2399--2401},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw162},
  doi          = {10.1093/BIOINFORMATICS/BTW162},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangGHP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/JiangKGG16,
  author       = {Biaobin Jiang and
                  Kyle Kloster and
                  David F. Gleich and
                  Michael Gribskov},
  title        = {AptRank: an adaptive PageRank model for protein function prediction
                  on bi-relational graphs},
  journal      = {CoRR},
  volume       = {abs/1601.05506},
  year         = {2016},
  url          = {http://arxiv.org/abs/1601.05506},
  eprinttype    = {arXiv},
  eprint       = {1601.05506},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/JiangKGG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OtsukaMTOINYDNTSNNABCGKRTWM15,
  author       = {Yuta Otsuka and
                  Ai Muto and
                  Rikiya Takeuchi and
                  Chihiro Okada and
                  Motokazu Ishikawa and
                  Koichiro Nakamura and
                  Natsuko Yamamoto and
                  Hitomi Dose and
                  Kenji Nakahigashi and
                  Shigeki Tanishima and
                  Sivasundaram Suharnan and
                  Wataru Nomura and
                  Toru Nakayashiki and
                  Walid G. Aref and
                  Barry R. Bochner and
                  Tyrrell Conway and
                  Michael Gribskov and
                  Daisuke Kihara and
                  Kenneth E. Rudd and
                  Yukako Tohsato and
                  Barry L. Wanner and
                  Hirotada Mori},
  title        = {GenoBase: comprehensive resource database of \emph{Escherichia coli}
                  {K-12}},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Database-Issue},
  pages        = {606--617},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gku1164},
  doi          = {10.1093/NAR/GKU1164},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/OtsukaMTOINYDNTSNNABCGKRTWM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/AndinoGHAE15,
  author       = {Gladys K. Andino and
                  Michael Gribskov and
                  Greg J. Hunt and
                  Denis Anderson and
                  Jay D. Evans},
  editor       = {Jun Huan and
                  Satoru Miyano and
                  Amarda Shehu and
                  Xiaohua Tony Hu and
                  Bin Ma and
                  Sanguthevar Rajasekaran and
                  Vijay K. Gombar and
                  Matthieu{-}P. Schapranow and
                  Illhoi Yoo and
                  Jiayu Zhou and
                  Brian Chen and
                  Vinay Pai and
                  Brian G. Pierce},
  title        = {Differential gene expression in Varroa jacobsoni mites following a
                  host shift to European honey bees (Apis mellifera)},
  booktitle    = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
                  {BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
  pages        = {1715--1716},
  publisher    = {{IEEE} Computer Society},
  year         = {2015},
  url          = {https://doi.org/10.1109/BIBM.2015.7359935},
  doi          = {10.1109/BIBM.2015.7359935},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibm/AndinoGHAE15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigdataconf/LiuG15,
  author       = {Muyi Liu and
                  Michael Gribskov},
  title        = {MMC-margin: Identification of maximum frequent subgraphs by metropolis
                  Monte Carlo sampling},
  booktitle    = {2015 {IEEE} International Conference on Big Data {(IEEE} BigData 2015),
                  Santa Clara, CA, USA, October 29 - November 1, 2015},
  pages        = {849--856},
  publisher    = {{IEEE} Computer Society},
  year         = {2015},
  url          = {https://doi.org/10.1109/BigData.2015.7363832},
  doi          = {10.1109/BIGDATA.2015.7363832},
  timestamp    = {Fri, 19 Nov 2021 16:08:20 +0100},
  biburl       = {https://dblp.org/rec/conf/bigdataconf/LiuG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/globalsip/JiangGG15,
  author       = {Biaobin Jiang and
                  David F. Gleich and
                  Michael Gribskov},
  title        = {Differential flux balance analysis of quantitative proteomic data
                  on protein interaction networks},
  booktitle    = {2015 {IEEE} Global Conference on Signal and Information Processing,
                  GlobalSIP 2015, Orlando, FL, USA, December 14-16, 2015},
  pages        = {977--981},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/GlobalSIP.2015.7418343},
  doi          = {10.1109/GLOBALSIP.2015.7418343},
  timestamp    = {Wed, 16 Oct 2019 14:14:51 +0200},
  biburl       = {https://dblp.org/rec/conf/globalsip/JiangGG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RanganathanGT08,
  author       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Tin Wee Tan},
  title        = {Bioinformatics research in the Asia Pacific: a 2007 update},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  number       = {{S-1}},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-S1-S1},
  doi          = {10.1186/1471-2105-9-S1-S1},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/RanganathanGT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/LiRGSG08,
  author       = {Kejie Li and
                  Reazur Rahman and
                  Aditi Gupta and
                  Prasad Siddavatam and
                  Michael Gribskov},
  editor       = {Ion I. Mandoiu and
                  Raj Sunderraman and
                  Alexander Zelikovsky},
  title        = {Pattern Matching in {RNA} Structures},
  booktitle    = {Bioinformatics Research and Applications, Fourth International Symposium,
                  {ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4983},
  pages        = {317--330},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-79450-9\_30},
  doi          = {10.1007/978-3-540-79450-9\_30},
  timestamp    = {Tue, 14 May 2019 10:00:51 +0200},
  biburl       = {https://dblp.org/rec/conf/isbra/LiRGSG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RanganathanTGT06,
  author       = {Shoba Ranganathan and
                  Martti Tammi and
                  Michael Gribskov and
                  Tin Wee Tan},
  title        = {Establishing bioinformatics research in the Asia Pacific},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  number       = {{S-5}},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-S5-S1},
  doi          = {10.1186/1471-2105-7-S5-S1},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/RanganathanTGT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GuGB06,
  author       = {Jenny Gu and
                  Michael Gribskov and
                  Philip E. Bourne},
  title        = {Wiggle - Predicting Functionally Flexible Regions from Primary Sequence},
  journal      = {PLoS Comput. Biol.},
  volume       = {2},
  number       = {7},
  year         = {2006},
  url          = {https://doi.org/10.1371/journal.pcbi.0020090},
  doi          = {10.1371/JOURNAL.PCBI.0020090},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/GuGB06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Gribskov05,
  author       = {Michael Gribskov},
  title        = {An Open Forum for Computational Biology},
  journal      = {PLoS Comput. Biol.},
  volume       = {1},
  number       = {1},
  year         = {2005},
  url          = {https://doi.org/10.1371/journal.pcbi.0010005},
  doi          = {10.1371/JOURNAL.PCBI.0010005},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/Gribskov05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Gribskov05a,
  author       = {Michael Gribskov},
  title        = {The {ISCB:} Growing and Evolving in Step with Science},
  journal      = {PLoS Comput. Biol.},
  volume       = {1},
  number       = {5},
  year         = {2005},
  url          = {https://doi.org/10.1371/journal.pcbi.0010051},
  doi          = {10.1371/JOURNAL.PCBI.0010051},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/Gribskov05a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ZhengNGKLF04,
  author       = {Christina L. Zheng and
                  T. Murlidharan Nair and
                  Michael Gribskov and
                  Y. S. Kwon and
                  Hai{-}Ri Li and
                  Xiang{-}Dong Fu},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Tiffany A. Jung and
                  Teri E. Klein},
  title        = {A Database Designed to Computationally Aid an Experimental Approach
                  to Alternative Splicing},
  booktitle    = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
                  6-10 January 2004},
  pages        = {78--88},
  publisher    = {World Scientific},
  year         = {2004},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb04/zheng.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/ZhengNGKLF04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FinkDPWMCG03,
  author       = {J. Lynn Fink and
                  Scott Drewes and
                  Hiren Patel and
                  John B. Welsh and
                  Daniel R. Masys and
                  Jacques Corbeil and
                  Michael Gribskov},
  title        = {2HAPI: {A} Microarray Data Analysis System},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {11},
  pages        = {1443--1445},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg169},
  doi          = {10.1093/BIOINFORMATICS/BTG169},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FinkDPWMCG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ZhengFUG03,
  author       = {Christina L. Zheng and
                  Fariba Fana and
                  Poornaprajna V. Udupi and
                  Michael Gribskov},
  title        = {a program for automatic generation of database interfaces},
  journal      = {Comput. Biol. Chem.},
  volume       = {27},
  number       = {2},
  pages        = {135--139},
  year         = {2003},
  url          = {https://doi.org/10.1016/S1476-9271(03)00021-5},
  doi          = {10.1016/S1476-9271(03)00021-5},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/candc/ZhengFUG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/NairZFSG03,
  author       = {T. Murlidharan Nair and
                  Christina L. Zheng and
                  J. Lynn Fink and
                  Robert O. Stuart and
                  Michael Gribskov},
  title        = {Rival penalized competitive learning {(RPCL):} a topology-determining
                  algorithm for analyzing gene expression data},
  journal      = {Comput. Biol. Chem.},
  volume       = {27},
  number       = {6},
  pages        = {565--574},
  year         = {2003},
  url          = {https://doi.org/10.1016/j.compbiolchem.2003.09.006},
  doi          = {10.1016/J.COMPBIOLCHEM.2003.09.006},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/NairZFSG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BaileyG03,
  author       = {Timothy L. Bailey and
                  Michael Gribskov},
  title        = {Estimating and Evaluating the Statistics of Gapped Local-Alignment
                  Scores},
  journal      = {J. Comput. Biol.},
  volume       = {9},
  number       = {3},
  pages        = {575--593},
  year         = {2003},
  url          = {https://doi.org/10.1089/106652702760138637},
  doi          = {10.1089/106652702760138637},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/BaileyG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TchieuFFHNNSSTVWG03,
  author       = {Jason H. Tchieu and
                  Fariba Fana and
                  J. Lynn Fink and
                  Jeffrey Harper and
                  T. Murlidharan Nair and
                  R. Hannes Niedner and
                  Douglas W. Smith and
                  Kenneth Steube and
                  Tobey M. Tam and
                  Stella Veretnik and
                  Degeng Wang and
                  Michael Gribskov},
  title        = {The PlantsP and PlantsT Functional Genomics Databases},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {342--344},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg025},
  doi          = {10.1093/NAR/GKG025},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/TchieuFFHNNSSTVWG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/omics/Gribskov03,
  author       = {Michael Gribskov},
  title        = {Challenges in Data Management for Functional Genomics},
  journal      = {{OMICS}},
  volume       = {7},
  number       = {1},
  pages        = {3--6},
  year         = {2003},
  url          = {https://doi.org/10.1089/153623103322006463},
  doi          = {10.1089/153623103322006463},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/omics/Gribskov03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChienRBG03,
  author       = {Samson Chien and
                  Lawrence T. Reiter and
                  Ethan Bier and
                  Michael Gribskov},
  title        = {Homophila: human disease gene cognates in Drosophila},
  journal      = {Nucleic Acids Res.},
  volume       = {30},
  number       = {1},
  pages        = {149--151},
  year         = {2002},
  url          = {https://doi.org/10.1093/nar/30.1.149},
  doi          = {10.1093/NAR/30.1.149},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ChienRBG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MasysWFGKC01,
  author       = {Daniel R. Masys and
                  John B. Welsh and
                  J. Lynn Fink and
                  Michael Gribskov and
                  Igor Klacansky and
                  Jacques Corbeil},
  title        = {Use of keyword hierarchies to interpret gene expression patterns},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {4},
  pages        = {319--326},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.4.319},
  doi          = {10.1093/BIOINFORMATICS/17.4.319},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MasysWFGKC01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GribskovFHHHSTZ01,
  author       = {Michael Gribskov and
                  Fariba Fana and
                  Jeffrey Harper and
                  Debra A. Hope and
                  Alice C. Harmon and
                  Douglas W. Smith and
                  Frans E. Tax and
                  Guangfa Zhang},
  title        = {PlantsP: a functional genomics database for plant phosphorylation},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {111--113},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.111},
  doi          = {10.1093/NAR/29.1.111},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GribskovFHHHSTZ01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaileyG00,
  author       = {Timothy L. Bailey and
                  Michael Gribskov},
  title        = {Concerning the accuracy of {MAST} E-values},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {5},
  pages        = {488--489},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.5.488},
  doi          = {10.1093/BIOINFORMATICS/16.5.488},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaileyG00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BourneG00,
  author       = {Philip E. Bourne and
                  Michael Gribskov},
  title        = {{ISMB-2000:} Bioinformatics enters a new millennium},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {9},
  pages        = {749},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.9.749},
  doi          = {10.1093/BIOINFORMATICS/16.9.749},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BourneG00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/2000,
  editor       = {Philip E. Bourne and
                  Michael Gribskov and
                  Russ B. Altman and
                  Nancy Jensen and
                  Debra A. Hope and
                  Thomas Lengauer and
                  Julie C. Mitchell and
                  Eric D. Scheeff and
                  Chris Smith and
                  Shawn Strande and
                  Helge Weissig},
  title        = {Proceedings of the Eighth International Conference on Intelligent
                  Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
                  Diego, CA, {USA}},
  publisher    = {{AAAI}},
  year         = {2000},
  isbn         = {1-57735-115-0},
  timestamp    = {Fri, 04 May 2007 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/2000.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaileyG98,
  author       = {Timothy L. Bailey and
                  Michael Gribskov},
  title        = {Combining evidence using p-values: application to sequence homology
                  searches},
  journal      = {Bioinform.},
  volume       = {14},
  number       = {1},
  pages        = {48--54},
  year         = {1998},
  url          = {https://doi.org/10.1093/bioinformatics/14.1.48},
  doi          = {10.1093/BIOINFORMATICS/14.1.48},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaileyG98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BaileyG98,
  author       = {Timothy L. Bailey and
                  Michael Gribskov},
  title        = {Methods and Statistics for Combining Motif Match Scores},
  journal      = {J. Comput. Biol.},
  volume       = {5},
  number       = {2},
  pages        = {211--221},
  year         = {1998},
  url          = {https://doi.org/10.1089/cmb.1998.5.211},
  doi          = {10.1089/CMB.1998.5.211},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/BaileyG98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BaileyG97,
  author       = {Timothy L. Bailey and
                  Michael Gribskov},
  title        = {Score Distributions for Simultaneous Matching to Multiple Motifs},
  journal      = {J. Comput. Biol.},
  volume       = {4},
  number       = {1},
  pages        = {45--59},
  year         = {1997},
  url          = {https://doi.org/10.1089/cmb.1997.4.45},
  doi          = {10.1089/CMB.1997.4.45},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/BaileyG97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/GribskovR96,
  author       = {Michael Gribskov and
                  Nina L. Robinson},
  title        = {Use of Receiver Operating Characteristic {(ROC)} Analysis to Evaluate
                  Sequence Matching},
  journal      = {Comput. Chem.},
  volume       = {20},
  number       = {1},
  pages        = {25--33},
  year         = {1996},
  url          = {https://doi.org/10.1016/S0097-8485(96)80004-0},
  doi          = {10.1016/S0097-8485(96)80004-0},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/GribskovR96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaileyG96,
  author       = {Timothy L. Bailey and
                  Michael Gribskov},
  editor       = {David J. States and
                  Pankaj Agarwal and
                  Terry Gaasterland and
                  Lawrence Hunter and
                  Randall Smith},
  title        = {The Megaprior Heuristic for Discovering Protein Sequence Patterns},
  booktitle    = {Proceedings of the Fourth International Conference on Intelligent
                  Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996},
  pages        = {15--24},
  publisher    = {{AAAI}},
  year         = {1996},
  url          = {http://www.aaai.org/Library/ISMB/1996/ismb96-002.php},
  timestamp    = {Thu, 13 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BaileyG96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/Gribskov93,
  author       = {Michael Gribskov},
  title        = {A Mechanistic View of Proteins and Their Sequences},
  journal      = {Comput. Chem.},
  volume       = {17},
  number       = {2},
  pages        = {113--116},
  year         = {1993},
  url          = {https://doi.org/10.1016/0097-8485(93)85002-T},
  doi          = {10.1016/0097-8485(93)85002-T},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/Gribskov93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/Gribskov92,
  author       = {Michael Gribskov},
  title        = {The Language Metaphor in Sequence Analysis},
  journal      = {Comput. Chem.},
  volume       = {16},
  number       = {2},
  pages        = {85--88},
  year         = {1992},
  url          = {https://doi.org/10.1016/0097-8485(92)80033-V},
  doi          = {10.1016/0097-8485(92)80033-V},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/Gribskov92.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GribskovHEE88,
  author       = {Michael Gribskov and
                  M. Homyak and
                  J. Edenfield and
                  David S. Eisenberg},
  title        = {Profile scanning for three-dimensional structural patterns in protein
                  sequences},
  journal      = {Comput. Appl. Biosci.},
  volume       = {4},
  number       = {1},
  pages        = {61--66},
  year         = {1988},
  url          = {https://doi.org/10.1093/bioinformatics/4.1.61},
  doi          = {10.1093/BIOINFORMATICS/4.1.61},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GribskovHEE88.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GribskovBD86,
  author       = {Michael Gribskov and
                  Richard R. Burgess and
                  J. Devereux},
  title        = {PEPPLOT, a protein secondary structure analysis program for the {UWGCG}
                  sequence analysis software package},
  journal      = {Nucleic Acids Res.},
  volume       = {14},
  number       = {1},
  pages        = {327--334},
  year         = {1986},
  url          = {https://doi.org/10.1093/nar/14.1.327},
  doi          = {10.1093/NAR/14.1.327},
  timestamp    = {Fri, 08 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GribskovBD86.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GribskovDB84,
  author       = {Michael Gribskov and
                  J. Devereux and
                  Richard R. Burgess},
  title        = {The codon preference plot: graphic analysis of protein coding sequences
                  and prediction of gene expression},
  journal      = {Nucleic Acids Res.},
  volume       = {12},
  number       = {1},
  pages        = {539--549},
  year         = {1984},
  url          = {https://doi.org/10.1093/nar/12.1Part2.539},
  doi          = {10.1093/NAR/12.1PART2.539},
  timestamp    = {Fri, 08 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GribskovDB84.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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