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ORCIDBibTeX records: Graziano Pesole
@article{DBLP:journals/nar/GiudiceZCPTPP23,
author = {Claudio Lo Giudice and
Federico Zambelli and
Matteo Chiara and
Giulio Pavesi and
Marco Antonio Tangaro and
Ernesto Picardi and
Graziano Pesole},
title = {UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs
untranslated regions},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {337--344},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1016},
doi = {10.1093/NAR/GKAC1016},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GiudiceZCPTPP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BalechSMPS22,
author = {Bachir Balech and
Anna Sandionigi and
Marinella Marzano and
Graziano Pesole and
Monica Santamaria},
title = {MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome
oxidase subunit-I {DNA} sequences},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baab084},
doi = {10.1093/DATABASE/BAAB084},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/BalechSMPS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icwe/TangaroAMCFDPZ22,
author = {Marco Antonio Tangaro and
Marica Antonacci and
Pietro Mandreoli and
Daniele Colombo and
Nadina Foggetti and
Giacinto Donvito and
Graziano Pesole and
Federico Zambelli},
editor = {Giuseppe Agapito and
Anna Bernasconi and
Cinzia Cappiello and
Hasan Ali Khattak and
In{-}Young Ko and
Giuseppe Loseto and
Michael Mrissa and
Luca Nanni and
Pietro Pinoli and
Azzurra Ragone and
Michele Ruta and
Floriano Scioscia and
Abhishek Srivastava},
title = {The Laniakea Dashboard and Storage Encryption Components: {A} Foundation
for Developing On-Demand Cloud Services for Life Science},
booktitle = {Current Trends in Web Engineering - {ICWE} 2022 International Workshops,
BECS, {SWEET} and WALS, Bari, Italy, July 5-8, 2022, Revised Selected
Papers},
series = {Communications in Computer and Information Science},
volume = {1668},
pages = {179--191},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-25380-5\_14},
doi = {10.1007/978-3-031-25380-5\_14},
timestamp = {Wed, 02 Aug 2023 09:02:08 +0200},
biburl = {https://dblp.org/rec/conf/icwe/TangaroAMCFDPZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChiaraDGMPRZPPH21,
author = {Matteo Chiara and
Anna Maria D'Erchia and
Carmela Gissi and
Caterina Manzari and
Antonio Parisi and
Nicoletta Resta and
Federico Zambelli and
Ernesto Picardi and
Giulio Pavesi and
David Stephen Horner and
Graziano Pesole},
title = {Next generation sequencing of SARS-CoV-2 genomes: challenges, applications
and opportunities},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {616--630},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa297},
doi = {10.1093/BIB/BBAA297},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChiaraDGMPRZPPH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiaraZTMHP21,
author = {Matteo Chiara and
Federico Zambelli and
Marco Antonio Tangaro and
Pietro Mandreoli and
David Stephen Horner and
Graziano Pesole},
title = {CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes},
journal = {Bioinform.},
volume = {36},
number = {22-23},
pages = {5522--5523},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa1047},
doi = {10.1093/BIOINFORMATICS/BTAA1047},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiaraZTMHP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiaraMTDSFHZP21,
author = {Matteo Chiara and
Pietro Mandreoli and
Marco Antonio Tangaro and
Anna Maria D'Erchia and
Sandro Sorrentino and
Cinzia Forleo and
David Stephen Horner and
Federico Zambelli and
Graziano Pesole},
title = {{VINYL:} Variant prIoritizatioN bY survivaL analysis},
journal = {Bioinform.},
volume = {36},
number = {24},
pages = {5590--5599},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa1067},
doi = {10.1093/BIOINFORMATICS/BTAA1067},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiaraMTDSFHZP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangaroDFLGDLBPS21,
author = {Marco Antonio Tangaro and
Giuseppe Defazio and
Bruno Fosso and
Vito Flavio Licciulli and
Giorgio Grillo and
Giacinto Donvito and
Enrico Lavezzo and
Giacomo Baruzzo and
Graziano Pesole and
Monica Santamaria},
title = {ITSoneWB: profiling global taxonomic diversity of eukaryotic communities
on Galaxy},
journal = {Bioinform.},
volume = {37},
number = {22},
pages = {4253--4254},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab431},
doi = {10.1093/BIOINFORMATICS/BTAB431},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangaroDFLGDLBPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangaroMCDAPBRB21,
author = {Marco Antonio Tangaro and
Pietro Mandreoli and
Matteo Chiara and
Giacinto Donvito and
Marica Antonacci and
Antonio Parisi and
Angelica Bianco and
Angelo Romano and
Daniela Manila Bianchi and
Davide Cangelosi and
Paolo Uva and
Ivan Molineris and
Vladimir Nosi and
Raffaele A. Calogero and
Luca Alessandr{\`{\i}} and
Elena Pedrini and
Marina Mordenti and
Emanuele Bonetti and
Luca Sangiorgi and
Graziano Pesole and
Federico Zambelli},
title = {Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand
instances as a cloud-based service},
journal = {{BMC} Bioinform.},
volume = {22-S},
number = {15},
pages = {544},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04401-3},
doi = {10.1186/S12859-021-04401-3},
timestamp = {Wed, 26 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TangaroMCDAPBRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MansiTGFKSCCPP21,
author = {Luigi Mansi and
Marco Antonio Tangaro and
Claudio Lo Giudice and
Tiziano Flati and
Eli Kopel and
Amos Avraham Schaffer and
Tiziana Castrignan{\`{o}} and
Giovanni Chillemi and
Graziano Pesole and
Ernesto Picardi},
title = {REDIportal: millions of novel A-to-I {RNA} editing events from thousands
of RNAseq experiments},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D1012--D1019},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa916},
doi = {10.1093/NAR/GKAA916},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MansiTGFKSCCPP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/WaterhouseAABBCDLPQGRSSAV21,
author = {Robert M. Waterhouse and
Anne{-}Fran{\c{c}}oise Adam{-}Blondon and
Donat Agosti and
Petr Baldrian and
Bachir Balech and
Erwan Le Corre and
Robert P. Davey and
Henrik Lantz and
Graziano Pesole and
Christian Quast and
Frank Oliver Gl{\"{o}}ckner and
Niels Raes and
Anna Sandionigi and
Monica Santamaria and
Wouter Addink and
Jiri Vohradsky and
Amandine Nunes{-}Jorge and
Nils Peder Willassen and
Jerry Lanfear},
title = {Recommendations for connecting molecular sequence and biodiversity
research infrastructures through {ELIXIR}},
journal = {F1000Research},
volume = {10},
pages = {1238},
year = {2021},
url = {https://doi.org/10.12688/f1000research.73825.1},
doi = {10.12688/F1000RESEARCH.73825.1},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/WaterhouseAABBCDLPQGRSSAV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChiaraZPHP20,
author = {Matteo Chiara and
Federico Zambelli and
Ernesto Picardi and
David Stephen Horner and
Graziano Pesole},
title = {Critical assessment of bioinformatics methods for the characterization
of pathological repeat expansions with single-molecule sequencing
data},
journal = {Briefings Bioinform.},
volume = {21},
number = {6},
pages = {1971--1986},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz099},
doi = {10.1093/BIB/BBZ099},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChiaraZPHP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CastrignanoGFCP20,
author = {Tiziana Castrignan{\`{o}} and
Silvia Gioiosa and
Tiziano Flati and
Mirko Cestari and
Ernesto Picardi and
Matteo Chiara and
Maddalena Fratelli and
Stefano Amente and
Marco Cirilli and
Marco Antonio Tangaro and
Giovanni Chillemi and
Graziano Pesole and
Federico Zambelli},
title = {{ELIXIR-IT} HPC@CINECA: high performance computing resources for the
bioinformatics community},
journal = {{BMC} Bioinform.},
volume = {21-S},
number = {10},
pages = {352},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03565-8},
doi = {10.1186/S12859-020-03565-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CastrignanoGFCP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FlatiGSTDPCPC20,
author = {Tiziano Flati and
Silvia Gioiosa and
Nicola Spallanzani and
Ilario Tagliaferri and
Maria Angela Diroma and
Graziano Pesole and
Giovanni Chillemi and
Ernesto Picardi and
Tiziana Castrignan{\`{o}}},
title = {HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing
analysis},
journal = {{BMC} Bioinform.},
volume = {21-S},
number = {10},
pages = {353},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03562-x},
doi = {10.1186/S12859-020-03562-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FlatiGSTDPCPC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DiromaCPP19,
author = {Maria Angela Diroma and
Loredana Ciaccia and
Graziano Pesole and
Ernesto Picardi},
title = {Elucidating the editome: bioinformatics approaches for {RNA} editing
detection},
journal = {Briefings Bioinform.},
volume = {20},
number = {2},
pages = {436--447},
year = {2019},
url = {https://doi.org/10.1093/bib/bbx129},
doi = {10.1093/BIB/BBX129},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/DiromaCPP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FossoPRV18,
author = {Bruno Fosso and
Graziano Pesole and
Francesc Rossell{\'{o}} and
Gabriel Valiente},
title = {Unbiased Taxonomic Annotation of Metagenomic Samples},
journal = {J. Comput. Biol.},
volume = {25},
number = {3},
pages = {348--360},
year = {2018},
url = {https://doi.org/10.1089/cmb.2017.0144},
doi = {10.1089/CMB.2017.0144},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FossoPRV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SantamariaFLBLG18,
author = {Monica Santamaria and
Bruno Fosso and
Flavio Licciulli and
Bachir Balech and
Ilaria Larini and
Giorgio Grillo and
Giorgio De Caro and
Sabino Liuni and
Graziano Pesole},
title = {ITSoneDB: a comprehensive collection of eukaryotic ribosomal {RNA}
Internal Transcribed Spacer 1 {(ITS1)} sequences},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D127--D132},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx855},
doi = {10.1093/NAR/GKX855},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SantamariaFLBLG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FossoSDLCVPGCCV17,
author = {Bruno Fosso and
Monica Santamaria and
Mattia D'Antonio and
Domenica Lovero and
Giacomo Corrado and
Enrico Vizza and
N. P{\'{a}}ssaro and
Anna Rosa Garbuglia and
M. R. Capobianchi and
Marco Crescenzi and
Gabriel Valiente and
Graziano Pesole},
title = {MetaShot: an accurate workflow for taxon classification of host-associated
microbiome from shotgun metagenomic data},
journal = {Bioinform.},
volume = {33},
number = {11},
pages = {1730--1732},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx036},
doi = {10.1093/BIOINFORMATICS/BTX036},
timestamp = {Tue, 14 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FossoSDLCVPGCCV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PicardiDGP17,
author = {Ernesto Picardi and
Anna Maria D'Erchia and
Claudio Lo Giudice and
Graziano Pesole},
title = {REDIportal: a comprehensive database of A-to-I {RNA} editing events
in humans},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D750--D757},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw767},
doi = {10.1093/NAR/GKW767},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/PicardiDGP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/FossoPRV17,
author = {Bruno Fosso and
Graziano Pesole and
Francesc Rossell{\'{o}} and
Gabriel Valiente},
editor = {Zhipeng Cai and
Ovidiu Daescu and
Min Li},
title = {Unbiased Taxonomic Annotation of Metagenomic Samples},
booktitle = {Bioinformatics Research and Applications - 13th International Symposium,
{ISBRA} 2017, Honolulu, HI, USA, May 29 - June 2, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10330},
pages = {162--173},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-59575-7\_15},
doi = {10.1007/978-3-319-59575-7\_15},
timestamp = {Thu, 20 Aug 2020 15:58:55 +0200},
biburl = {https://dblp.org/rec/conf/isbra/FossoPRV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BalechVDMNP15,
author = {Bachir Balech and
Saverio Vicario and
Giacinto Donvito and
Alfonso Monaco and
Pasquale Notarangelo and
Graziano Pesole},
title = {{MSA-PAD:} {DNA} multiple sequence alignment framework based on {PFAM}
accessed domain information},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2571--2573},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv141},
doi = {10.1093/BIOINFORMATICS/BTV141},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BalechVDMNP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FossoSMAVDMNP15,
author = {Bruno Fosso and
Monica Santamaria and
Marinella Marzano and
Daniel Alonso{-}Alemany and
Gabriel Valiente and
Giacinto Donvito and
Alfonso Monaco and
Pasquale Notarangelo and
Graziano Pesole},
title = {BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic
AmpliconS},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {203:1--203:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0595-z},
doi = {10.1186/S12859-015-0595-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FossoSMAVDMNP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CalabreseSDSGGPPA14,
author = {Claudia Calabrese and
Domenico Simone and
Maria Angela Diroma and
Mariangela Santorsola and
Cristiano Gutt{\`{a}} and
Giuseppe Gasparre and
Ernesto Picardi and
Graziano Pesole and
Marcella Attimonelli},
title = {MToolBox: a highly automated pipeline for heteroplasmy annotation
and prioritization analysis of human mitochondrial variants in high-throughput
sequencing},
journal = {Bioinform.},
volume = {30},
number = {21},
pages = {3115--3117},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu483},
doi = {10.1093/BIOINFORMATICS/BTU483},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CalabreseSDSGGPPA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BevilacquaPGSSPP14,
author = {Vitoantonio Bevilacqua and
Nicola Pietroleonardo and
Ely Ignazio Giannino and
Fabio Stroppa and
Domenico Simone and
Graziano Pesole and
Ernesto Picardi},
title = {EasyCluster2: an improved tool for clustering and assembling long
transcriptome reads},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-15}},
pages = {S7},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S15-S7},
doi = {10.1186/1471-2105-15-S15-S7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BevilacquaPGSSPP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcs/DAntonioMCEPP14,
author = {Mattia D'Antonio and
Paolo D'Onorio De Meo and
Tiziana Castrignan{\`{o}} and
Giovanni Erbacci and
Matteo Pallocca and
Graziano Pesole},
title = {{ODESSA:} {A} high performance analysis pipeline for Ultra Deep targeted
Exome Sequencing data},
booktitle = {International Conference on High Performance Computing {\&} Simulation,
{HPCS} 2014, Bologna, Italy, 21-25 July, 2014},
pages = {608--615},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/HPCSim.2014.6903743},
doi = {10.1109/HPCSIM.2014.6903743},
timestamp = {Wed, 16 Oct 2019 14:14:55 +0200},
biburl = {https://dblp.org/rec/conf/hpcs/DAntonioMCEPP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZambelliPP13,
author = {Federico Zambelli and
Graziano Pesole and
Giulio Pavesi},
title = {Motif discovery and transcription factor binding sites before and
after the next-generation sequencing era},
journal = {Briefings Bioinform.},
volume = {14},
number = {2},
pages = {225--237},
year = {2013},
url = {https://doi.org/10.1093/bib/bbs016},
doi = {10.1093/BIB/BBS016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZambelliPP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PicardiP13,
author = {Ernesto Picardi and
Graziano Pesole},
title = {REDItools: high-throughput {RNA} editing detection made easy},
journal = {Bioinform.},
volume = {29},
number = {14},
pages = {1813--1814},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt287},
doi = {10.1093/BIOINFORMATICS/BTT287},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PicardiP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoriaBPM13,
author = {Ilenia Boria and
Lara Boatti and
Graziano Pesole and
Flavio Mignone},
title = {NGS-Trex: Next Generation Sequencing Transcriptome profile explorer},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-7}},
pages = {S10},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S7-S10},
doi = {10.1186/1471-2105-14-S7-S10},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BoriaBPM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DAntonioMPEPSPPC13,
author = {Mattia D'Antonio and
Paolo D'Onorio De Meo and
Daniele Paoletti and
Berardino Elmi and
Matteo Pallocca and
Nico Sanna and
Ernesto Picardi and
Graziano Pesole and
Tiziana Castrignan{\`{o}}},
title = {{WEP:} a high-performance analysis pipeline for whole-exome data},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-7}},
pages = {S11},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S7-S11},
doi = {10.1186/1471-2105-14-S7-S11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DAntonioMPEPSPPC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GiuliettiPDMPCDPZPPP13,
author = {Matteo Giulietti and
Francesco Piva and
Mattia D'Antonio and
Paolo D'Onorio De Meo and
Daniele Paoletti and
Tiziana Castrignan{\`{o}} and
Anna Maria D'Erchia and
Ernesto Picardi and
Federico Zambelli and
Giovanni Principato and
Giulio Pavesi and
Graziano Pesole},
title = {SpliceAid-F: a database of human splicing factors and their RNA-binding
sites},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {125--131},
year = {2013},
url = {https://doi.org/10.1093/nar/gks997},
doi = {10.1093/NAR/GKS997},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GiuliettiPDMPCDPZPPP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZambelliPP13,
author = {Federico Zambelli and
Graziano Pesole and
Giulio Pavesi},
title = {PscanChIP: finding over-represented transcription factor-binding site
motifs and their correlations in sequences from ChIP-Seq experiments},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {535--543},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt448},
doi = {10.1093/NAR/GKT448},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZambelliPP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/BevilacquaPGSPP13,
author = {Vitoantonio Bevilacqua and
Nicola Pietroleonardo and
Ely Ignazio Giannino and
Fabio Stroppa and
Graziano Pesole and
Ernesto Picardi},
editor = {De{-}Shuang Huang and
Phalguni Gupta and
Ling Wang and
M. Michael Gromiha},
title = {Clustering and Assembling Large Transcriptome Datasets by EasyCluster2},
booktitle = {Emerging Intelligent Computing Technology and Applications - 9th International
Conference, {ICIC} 2013, Nanning, China, July 28-31, 2013. Proceedings},
series = {Communications in Computer and Information Science},
volume = {375},
pages = {231--236},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39678-6\_39},
doi = {10.1007/978-3-642-39678-6\_39},
timestamp = {Fri, 27 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icic/BevilacquaPGSPP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ValienteP12,
author = {Gabriel Valiente and
Graziano Pesole},
title = {Editorial},
journal = {Briefings Bioinform.},
volume = {13},
number = {6},
pages = {645},
year = {2012},
url = {https://doi.org/10.1093/bib/bbs079},
doi = {10.1093/BIB/BBS079},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ValienteP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SantamariaFCCGLLMAVP12,
author = {Monica Santamaria and
Bruno Fosso and
Arianna Consiglio and
Giorgio De Caro and
Giorgio Grillo and
Flavio Licciulli and
Sabino Liuni and
Marinella Marzano and
Daniel Alonso{-}Alemany and
Gabriel Valiente and
Graziano Pesole},
title = {Reference databases for taxonomic assignment in metagenomics},
journal = {Briefings Bioinform.},
volume = {13},
number = {6},
pages = {682--695},
year = {2012},
url = {https://doi.org/10.1093/bib/bbs036},
doi = {10.1093/BIB/BBS036},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SantamariaFCCGLLMAVP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PirolaRPPVB12,
author = {Yuri Pirola and
Raffaella Rizzi and
Ernesto Picardi and
Graziano Pesole and
Gianluca Della Vedova and
Paola Bonizzoni},
title = {PIntron: a fast method for detecting the gene structure due to alternative
splicing via maximal pairings of a pattern and a text},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-5}},
pages = {S2},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S5-S2},
doi = {10.1186/1471-2105-13-S5-S2},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PirolaRPPVB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeoDGLBPCPG12,
author = {Paolo D'Onorio De Meo and
Mattia D'Antonio and
Francesca Griggio and
Renato Lupi and
Massimiliano Borsani and
Giulio Pavesi and
Tiziana Castrignan{\`{o}} and
Graziano Pesole and
Carmela Gissi},
title = {MitoZoa 2.0: a database resource and search tools for comparative
and evolutionary analyses of mitochondrial genomes in Metazoa},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {1168--1172},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1144},
doi = {10.1093/NAR/GKR1144},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MeoDGLBPCPG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZambelliPPP12,
author = {Federico Zambelli and
Gian Marco Prazzoli and
Graziano Pesole and
Giulio Pavesi},
title = {Cscan: finding common regulators of a set of genes by using a collection
of genome-wide ChIP-seq datasets},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {510--515},
year = {2012},
url = {https://doi.org/10.1093/nar/gks483},
doi = {10.1093/NAR/GKS483},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZambelliPPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PicardiDCCP11,
author = {Ernesto Picardi and
Mattia D'Antonio and
Danilo Carrabino and
Tiziana Castrignan{\`{o}} and
Graziano Pesole},
title = {ExpEdit: a webserver to explore human {RNA} editing in RNA-Seq experiments},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1311--1312},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr117},
doi = {10.1093/BIOINFORMATICS/BTR117},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PicardiDCCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MartelliDBCDMFFLMMPPRRVZZCP11,
author = {Pier Luigi Martelli and
Mattia D'Antonio and
Paola Bonizzoni and
Tiziana Castrignan{\`{o}} and
Anna Maria D'Erchia and
Paolo D'Onorio De Meo and
Piero Fariselli and
Michele Finelli and
Flavio Licciulli and
Marina Mangiulli and
Flavio Mignone and
Giulio Pavesi and
Ernesto Picardi and
Raffaella Rizzi and
Ivan Rossi and
Alessio Valletti and
Andrea Zauli and
Federico Zambelli and
Rita Casadio and
Graziano Pesole},
title = {ASPicDB: a database of annotated transcript and protein variants generated
by alternative splicing},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {80--85},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1073},
doi = {10.1093/NAR/GKQ1073},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MartelliDBCDMFFLMMPPRRVZZCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HornerPCMLSPP10,
author = {David Stephen Horner and
Giulio Pavesi and
Tiziana Castrignan{\`{o}} and
Paolo D'Onorio De Meo and
Sabino Liuni and
Michael Sammeth and
Ernesto Picardi and
Graziano Pesole},
title = {Bioinformatics approaches for genomics and post genomics applications
of next-generation sequencing},
journal = {Briefings Bioinform.},
volume = {11},
number = {2},
pages = {181--197},
year = {2010},
url = {https://doi.org/10.1093/bib/bbp046},
doi = {10.1093/BIB/BBP046},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HornerPCMLSPP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrilloTLMLBGHPPP10,
author = {Giorgio Grillo and
Antonio Turi and
Flavio Licciulli and
Flavio Mignone and
Sabino Liuni and
Sandro Banfi and
Vincenzo Alessandro Gennarino and
David Stephen Horner and
Giulio Pavesi and
Ernesto Picardi and
Graziano Pesole},
title = {UTRdb and UTRsite {(RELEASE} 2010): a collection of sequences and
regulatory motifs of the untranslated regions of eukaryotic mRNAs},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {75--80},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp902},
doi = {10.1093/NAR/GKP902},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrilloTLMLBGHPPP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/BevilacquaPPRSR10,
author = {Vitoantonio Bevilacqua and
Ernesto Picardi and
Graziano Pesole and
Daniele Ranieri and
Vincenzo Stola and
Vito Ren{\`{o}}},
editor = {De{-}Shuang Huang and
T. Martin McGinnity and
Laurent Heutte and
Xiao{-}Ping (Steven) Zhang},
title = {New Tools for Expression Alternative Splicing Validation},
booktitle = {Advanced Intelligent Computing Theories and Applications - 6th International
Conference on Intelligent Computing, {ICIC} 2010, Changsha, China,
August 18-21, 2010. Proceedings},
series = {Communications in Computer and Information Science},
volume = {93},
pages = {222--231},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-14831-6\_30},
doi = {10.1007/978-3-642-14831-6\_30},
timestamp = {Fri, 28 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/BevilacquaPPRSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CreanzaHDMMAP09,
author = {Teresa Maria Creanza and
David Stephen Horner and
Annarita D'Addabbo and
Rosalia Maglietta and
Flavio Mignone and
Nicola Ancona and
Graziano Pesole},
title = {Statistical assessment of discriminative features for protein-coding
and non coding cross-species conserved sequence elements},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-6}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S6-S2},
doi = {10.1186/1471-2105-10-S6-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CreanzaHDMMAP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PicardiMP09,
author = {Ernesto Picardi and
Flavio Mignone and
Graziano Pesole},
title = {EasyCluster: a fast and efficient gene-oriented clustering tool for
large-scale transcriptome data},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-6}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S6-S10},
doi = {10.1186/1471-2105-10-S6-S10},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PicardiMP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RePH09,
author = {Matteo Re and
Graziano Pesole and
David Stephen Horner},
title = {Accurate discrimination of conserved coding and non-coding regions
through multiple indicators of evolutionary dynamics},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {282},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-282},
doi = {10.1186/1471-2105-10-282},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RePH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniMPPPR09,
author = {Paola Bonizzoni and
Giancarlo Mauri and
Graziano Pesole and
Ernesto Picardi and
Yuri Pirola and
Raffaella Rizzi},
title = {Detecting Alternative Gene Structures from Spliced ESTs: {A} Computational
Approach},
journal = {J. Comput. Biol.},
volume = {16},
number = {1},
pages = {43--66},
year = {2009},
url = {https://doi.org/10.1089/cmb.2008.0028},
doi = {10.1089/CMB.2008.0028},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniMPPPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZambelliPP09,
author = {Federico Zambelli and
Graziano Pesole and
Giulio Pavesi},
title = {Pscan: finding over-represented transcription factor binding site
motifs in sequences from co-regulated or co-expressed genes},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {247--252},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp464},
doi = {10.1093/NAR/GKP464},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZambelliPP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HornerPP08,
author = {David Stephen Horner and
Walter Pirovano and
Graziano Pesole},
title = {Correlated substitution analysis and the prediction of amino acid
structural contacts},
journal = {Briefings Bioinform.},
volume = {9},
number = {1},
pages = {46--56},
year = {2008},
url = {https://doi.org/10.1093/bib/bbm052},
doi = {10.1093/BIB/BBM052},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HornerPP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CastrignanoDACMDLMMPPRRBP08,
author = {Tiziana Castrignan{\`{o}} and
Mattia D'Antonio and
Anna Anselmo and
Danilo Carrabino and
A. D'Onorio De Meo and
Anna Maria D'Erchia and
Flavio Licciulli and
Marina Mangiulli and
Flavio Mignone and
Giulio Pavesi and
Ernesto Picardi and
Alberto Riva and
Raffaella Rizzi and
Paola Bonizzoni and
Graziano Pesole},
title = {ASPicDB: {A} database resource for alternative splicing analysis},
journal = {Bioinform.},
volume = {24},
number = {10},
pages = {1300--1304},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn113},
doi = {10.1093/BIOINFORMATICS/BTN113},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CastrignanoDACMDLMMPPRRBP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PesoleH08,
author = {Graziano Pesole and
Manuela Helmer{-}Citterich},
title = {Bioinformatics in Italy: BITS2007, the fourth annual meeting of the
Italian Society of Bioinformatics},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-2}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S2-S1},
doi = {10.1186/1471-2105-9-S2-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PesoleH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/AliotoGPP08,
author = {Tyler S. Alioto and
Roderic Guig{\'{o}} and
Ernesto Picardi and
Graziano Pesole},
editor = {Alvis Brazma and
Satoru Miyano and
Tatsuya Akutsu},
title = {GenePC and {ASPIC} Integrate Gene Predictions with Expressed Sequence
Alignments To Predict Alternative Transcripts},
booktitle = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
2008, 14-17 January 2008, Kyoto, Japan},
series = {Advances in Bioinformatics and Computational Biology},
volume = {6},
pages = {363--372},
publisher = {Imperial College Press},
year = {2008},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2008/apbc038a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/AliotoGPP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/MeoCDDLMPA08,
author = {Paolo D'Onorio De Meo and
Danilo Carrabino and
Mattia D'Antonio and
Annarita D'Addabbo and
Sabino Liuni and
Flavio Mignone and
Graziano Pesole and
Nicola Ancona},
title = {{HT-RLS:} High-Throughput Web Tool for Analysis of {DNA} Microarray
Data Using {RLS} classifiers},
booktitle = {8th {IEEE} International Symposium on Cluster Computing and the Grid
(CCGrid 2008), 19-22 May 2008, Lyon, France},
pages = {747--752},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/CCGRID.2008.108},
doi = {10.1109/CCGRID.2008.108},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/MeoCDDLMPA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/MagliettaDPPLPA07,
author = {Rosalia Maglietta and
Annarita D'Addabbo and
Ada Piepoli and
Francesco Perri and
Sabino Liuni and
Graziano Pesole and
Nicola Ancona},
title = {Selection of relevant genes in cancer diagnosis based on their prediction
accuracy},
journal = {Artif. Intell. Medicine},
volume = {40},
number = {1},
pages = {29--44},
year = {2007},
url = {https://doi.org/10.1016/j.artmed.2006.06.002},
doi = {10.1016/J.ARTMED.2006.06.002},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/MagliettaDPPLPA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagliettaPCLCLPPA07,
author = {Rosalia Maglietta and
Ada Piepoli and
Domenico Catalano and
Piepoli Licciulli and
Massimo Carella and
Sabino Liuni and
Graziano Pesole and
Francesco Perri and
Nicola Ancona},
title = {Statistical assessment of functional categories of genes deregulated
in pathological conditions by using microarray data},
journal = {Bioinform.},
volume = {23},
number = {16},
pages = {2063--2072},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm289},
doi = {10.1093/BIOINFORMATICS/BTM289},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagliettaPCLCLPPA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CasadioHP07,
author = {Rita Casadio and
Manuela Helmer{-}Citterich and
Graziano Pesole},
title = {Bioinformatics in Italy: BITS2006, the third annual meeting of the
Italian Society of Bioinformatics},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-1}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S1-S1},
doi = {10.1186/1471-2105-8-S1-S1},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CasadioHP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PavesiZP07,
author = {Giulio Pavesi and
Federico Zambelli and
Graziano Pesole},
title = {WeederH: an algorithm for finding conserved regulatory motifs and
regions in homologous sequences},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-46},
doi = {10.1186/1471-2105-8-46},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PavesiZP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SbisaCGLTLPGCDNTSG07,
author = {Elisabetta Sbis{\`{a}} and
Domenico Catalano and
Giorgio Grillo and
Flavio Licciulli and
Antonio Turi and
Sabino Liuni and
Graziano Pesole and
Anna De Grassi and
Mariano Francesco Caratozzolo and
Anna Maria D'Erchia and
Beatriz Navarro and
Apollonia Tullo and
Cecilia Saccone and
Andreas Gisel},
title = {p53FamTaG: a database resource of human p53, p63 and p73 direct target
genes combining \emph{in silico }prediction and microarray data},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-1}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S1-S20},
doi = {10.1186/1471-2105-8-S1-S20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SbisaCGLTLPGCDNTSG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/MeoCSCGLLRMP07,
author = {Paolo D'Onorio De Meo and
Danilo Carrabino and
Nico Sanna and
Tiziana Castrignan{\`{o}} and
Giorgio Grillo and
Flavio Licciulli and
Sabino Liuni and
Matteo Re and
Flavio Mignone and
Graziano Pesole},
title = {A high performance grid-web service framework for the identification
of 'conserved sequence tags'},
journal = {Future Gener. Comput. Syst.},
volume = {23},
number = {3},
pages = {371--381},
year = {2007},
url = {https://doi.org/10.1016/j.future.2006.07.012},
doi = {10.1016/J.FUTURE.2006.07.012},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/MeoCSCGLLRMP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CastrignanoMGLMTP06,
author = {Tiziana Castrignan{\`{o}} and
Paolo D'Onorio De Meo and
Giorgio Grillo and
Sabino Liuni and
Flavio Mignone and
Ivano Giuseppe Talamo and
Graziano Pesole},
title = {GenoMiner: a tool for genome-wide search of coding and non-coding
conserved sequence tags},
journal = {Bioinform.},
volume = {22},
number = {4},
pages = {497--499},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti754},
doi = {10.1093/BIOINFORMATICS/BTI754},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CastrignanoMGLMTP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnconaMPDCSLCPP06,
author = {Nicola Ancona and
Rosalia Maglietta and
Ada Piepoli and
Annarita D'Addabbo and
R. Cotugno and
M. Savino and
Sabino Liuni and
Massimo Carella and
Graziano Pesole and
Francesco Perri},
title = {On the statistical assessment of classifiers using {DNA} microarray
data},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {387},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-387},
doi = {10.1186/1471-2105-7-387},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AnconaMPDCSLCPP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CastrignanoRTMABP06,
author = {Tiziana Castrignan{\`{o}} and
Raffaella Rizzi and
Ivano Giuseppe Talamo and
Paolo D'Onorio De Meo and
Anna Anselmo and
Paola Bonizzoni and
Graziano Pesole},
title = {{ASPIC:} a web resource for alternative splicing prediction and transcript
isoforms characterization},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {440--443},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl324},
doi = {10.1093/NAR/GKL324},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CastrignanoRTMABP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PavesiMZSMP06,
author = {Giulio Pavesi and
Paolo Mereghetti and
Federico Zambelli and
Marco Stefani and
Giancarlo Mauri and
Graziano Pesole},
title = {MoD Tools: regulatory motif discovery in nucleotide sequences from
co-regulated or homologous genes},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {566--570},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl285},
doi = {10.1093/NAR/GKL285},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PavesiMZSMP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/MagliettaDPPLPA06,
author = {Rosalia Maglietta and
Annarita D'Addabbo and
Ada Piepoli and
Francesco Perri and
Sabino Liuni and
Graziano Pesole and
Nicola Ancona},
title = {Classification error as a measure of gene relevance in cancer diagnosis},
booktitle = {Proceedings of the International Joint Conference on Neural Networks,
{IJCNN} 2006, part of the {IEEE} World Congress on Computational Intelligence,
{WCCI} 2006, Vancouver, BC, Canada, 16-21 July 2006},
pages = {3553--3560},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IJCNN.2006.247364},
doi = {10.1109/IJCNN.2006.247364},
timestamp = {Tue, 10 Aug 2021 14:29:47 +0200},
biburl = {https://dblp.org/rec/conf/ijcnn/MagliettaDPPLPA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnconaMDLP05,
author = {Nicola Ancona and
Rosalia Maglietta and
Annarita D'Addabbo and
Sabino Liuni and
Graziano Pesole},
title = {Regularized Least Squares Cancer Classifiers from {DNA} microarray
data},
journal = {{BMC} Bioinform.},
volume = {6},
number = {{S-4}},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-S4-S2},
doi = {10.1186/1471-2105-6-S4-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AnconaMDLP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BonizzoniRP05,
author = {Paola Bonizzoni and
Raffaella Rizzi and
Graziano Pesole},
title = {{ASPIC:} a novel method to predict the exon-intron structure of a
gene that is optimally compatible to a set of transcript sequences},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {244},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-244},
doi = {10.1186/1471-2105-6-244},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BonizzoniRP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Helmer-CitterichCGMMPVS05,
author = {Manuela Helmer{-}Citterich and
Rita Casadio and
Alessandro Guffanti and
Giancarlo Mauri and
Luciano Milanesi and
Graziano Pesole and
Giorgio Valle and
Cecilia Saccone},
title = {Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics
Society},
journal = {{BMC} Bioinform.},
volume = {6},
number = {{S-4}},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-S4-S1},
doi = {10.1186/1471-2105-6-S4-S1},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Helmer-CitterichCGMMPVS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MignoneGLILKDSP05,
author = {Flavio Mignone and
Giorgio Grillo and
Flavio Licciulli and
Michele Iacono and
Sabino Liuni and
Paul J. Kersey and
Jorge Duarte and
Cecilia Saccone and
Graziano Pesole},
title = {UTRdb and UTRsite: a collection of sequences and regulatory motifs
of the untranslated regions of eukaryotic mRNAs},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {141--146},
year = {2005},
url = {https://doi.org/10.1093/nar/gki021},
doi = {10.1093/NAR/GKI021},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MignoneGLILKDSP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BocciaPBGMCLPPBB05,
author = {Angelo Boccia and
Mauro Petrillo and
Diego di Bernardo and
Alessandro Guffanti and
Flavio Mignone and
Stefano Confalonieri and
Lucilla Luzi and
Graziano Pesole and
Giovanni Paolella and
Andrea Ballabio and
Sandro Banfi},
title = {{DG-CST} (Disease Gene Conserved Sequence Tags), a database of human-mouse
conserved elements associated to disease genes},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {505--510},
year = {2005},
url = {https://doi.org/10.1093/nar/gki011},
doi = {10.1093/NAR/GKI011},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BocciaPBGMCLPPBB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iastedCI/AnconaALPM05,
author = {Nicola Ancona and
Annarita D'Addabbo and
Sabino Liuni and
Graziano Pesole and
Rosalia Maglietta},
editor = {M. H. Hamza},
title = {{SVM} and {RLS} Models for Cancer Classification},
booktitle = {{IASTED} International Conference on Computational Intelligence, Calgary,
Alberta, Canada, July 4-6, 2005},
pages = {250--255},
publisher = {{IASTED/ACTA} Press},
year = {2005},
timestamp = {Wed, 23 Aug 2006 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iastedCI/AnconaALPM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PavesiMP04,
author = {Giulio Pavesi and
Giancarlo Mauri and
Graziano Pesole},
title = {In silico representation and discovery of transcription factor binding
sites},
journal = {Briefings Bioinform.},
volume = {5},
number = {3},
pages = {217--236},
year = {2004},
url = {https://doi.org/10.1093/bib/5.3.217},
doi = {10.1093/BIB/5.3.217},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PavesiMP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MignoneHP04,
author = {Flavio Mignone and
David Stephen Horner and
Graziano Pesole},
title = {WebVar: a resource for the rapid estimation of relative site variability
from multiple sequence alignments},
journal = {Bioinform.},
volume = {20},
number = {8},
pages = {1331--1333},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth076},
doi = {10.1093/BIOINFORMATICS/BTH076},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MignoneHP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiselPGLLSP04,
author = {Andreas Gisel and
Maria Panetta and
Giorgio Grillo and
Flavio Licciulli and
Sabino Liuni and
Cecilia Saccone and
Graziano Pesole},
title = {DNAfan: a software tool for automated extraction and analysis of user-defined
sequence regions},
journal = {Bioinform.},
volume = {20},
number = {18},
pages = {3676--3679},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth420},
doi = {10.1093/BIOINFORMATICS/BTH420},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiselPGLLSP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcst/PavesiMP04,
author = {Giulio Pavesi and
Giancarlo Mauri and
Graziano Pesole},
title = {An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned
{RNA} Sequences},
journal = {J. Comput. Sci. Technol.},
volume = {19},
number = {1},
pages = {2--12},
year = {2004},
url = {https://doi.org/10.1007/BF02944781},
doi = {10.1007/BF02944781},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcst/PavesiMP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PavesiMMP04,
author = {Giulio Pavesi and
Paolo Mereghetti and
Giancarlo Mauri and
Graziano Pesole},
title = {Weeder Web: discovery of transcription factor binding sites in a set
of sequences from co-regulated genes},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {199--203},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh465},
doi = {10.1093/NAR/GKH465},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PavesiMMP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CastrignanoCGLMP04,
author = {Tiziana Castrignan{\`{o}} and
Alessandro Canali and
Giorgio Grillo and
Sabino Liuni and
Flavio Mignone and
Graziano Pesole},
title = {CSTminer: a web tool for the identification of coding and noncoding
conserved sequence tags through cross-species genome comparison},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {624--627},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh486},
doi = {10.1093/NAR/GKH486},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CastrignanoCGLMP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0024080,
author = {Cecilia Saccone and
Graziano Pesole},
title = {Handbook of Comparative Genomics - Principles and Methodology},
publisher = {Wiley},
year = {2003},
url = {http://eu.wiley.com/WileyCDA/WileyTitle/productCd-047139128X.html},
isbn = {978-0-471-39128-9},
timestamp = {Thu, 14 Apr 2011 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0024080.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HornerP03,
author = {David Stephen Horner and
Graziano Pesole},
title = {The estimation of relative site variability among aligned homologous
protein sequences},
journal = {Bioinform.},
volume = {19},
number = {5},
pages = {600--606},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg063},
doi = {10.1093/BIOINFORMATICS/BTG063},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HornerP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrilloLLSP03,
author = {Giorgio Grillo and
Flavio Licciulli and
Sabino Liuni and
Elisabetta Sbis{\`{a}} and
Graziano Pesole},
title = {PatSearch: a program for the detection of patterns and structural
motifs in nucleotide sequences},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3608--3612},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg548},
doi = {10.1093/NAR/GKG548},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrilloLLSP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ictai/PavesiMP03,
author = {Giulio Pavesi and
Giancarlo Mauri and
Graziano Pesole},
title = {Predicting Conserved Hairpin Motifs in Unaligned {RNA} Sequences},
booktitle = {15th {IEEE} International Conference on Tools with Artificial Intelligence
{(ICTAI} 2003), 3-5 November 2003, Sacramento, California, {USA}},
pages = {10--17},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/TAI.2003.1250164},
doi = {10.1109/TAI.2003.1250164},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ictai/PavesiMP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniPR03,
author = {Paola Bonizzoni and
Graziano Pesole and
Raffaella Rizzi},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Method to Detect Gene Structure and Alternative Splice Sites by
Agreeing ESTs to a Genomic Sequence},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {63--77},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_6},
doi = {10.1007/978-3-540-39763-2\_6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonizzoniPR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/LarizzaMPS02,
author = {Alessandra Larizza and
Wojciech Makalowski and
Graziano Pesole and
Cecilia Saccone},
title = {Evolutionary Dynamics of Mammalian {MRNA} Untranslated Regions by
Comparative Analysis of Orthologous Human, Artiodactyl and Rodent
Gene Pairs},
journal = {Comput. Chem.},
volume = {26},
number = {5},
pages = {479--490},
year = {2002},
url = {https://doi.org/10.1016/S0097-8485(02)00009-8},
doi = {10.1016/S0097-8485(02)00009-8},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/LarizzaMPS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AttimonelliCGGLLSPS03,
author = {Marcella Attimonelli and
Domenico Catalano and
Carmela Gissi and
Giorgio Grillo and
Flavio Licciulli and
Sabino Liuni and
Monica Santamaria and
Graziano Pesole and
Cecilia Saccone},
title = {MitoNuc: a database of nuclear genes coding for mitochondrial proteins.
Update 2002},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {172--173},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.172},
doi = {10.1093/NAR/30.1.172},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AttimonelliCGGLLSPS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PesoleLGLMGS03,
author = {Graziano Pesole and
Sabino Liuni and
Giorgio Grillo and
Flavio Licciulli and
Flavio Mignone and
Carmela Gissi and
Cecilia Saccone},
title = {UTRdb and UTRsite: specialized databases of sequences and functional
elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update
2002},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {335--340},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.335},
doi = {10.1093/NAR/30.1.335},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PesoleLGLMGS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PavesiMP01,
author = {Giulio Pavesi and
Giancarlo Mauri and
Graziano Pesole},
title = {Methods for Pattern Discovery in Unaligned Biological Sequences},
journal = {Briefings Bioinform.},
volume = {2},
number = {4},
pages = {417},
year = {2001},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PavesiMP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PavesiMP01,
author = {Giulio Pavesi and
Giancarlo Mauri and
Graziano Pesole},
title = {An algorithm for finding signals of unknown length in {DNA} sequences},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {207--214},
year = {2001},
timestamp = {Thu, 20 Jun 2002 11:09:36 +0200},
biburl = {https://dblp.org/rec/conf/ismb/PavesiMP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PesoleGLL00,
author = {Graziano Pesole and
Giorgio Grillo and
Alessandra Larizza and
Sabino Liuni},
title = {The Untranslated Regions of Eukaryotic MRNAs: Structure, Function,
Evolution and Bioinformatic Tools for Their Analysis},
journal = {Briefings Bioinform.},
volume = {1},
number = {3},
pages = {236--249},
year = {2000},
url = {https://doi.org/10.1093/bib/1.3.236},
doi = {10.1093/BIB/1.3.236},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PesoleGLL00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PesoleLD00,
author = {Graziano Pesole and
Sabino Liuni and
Mark D'Souza},
title = {PatSearch: a pattern matcher software that finds functional elements
in nucleotide and protein sequences and assesses their statistical
significance},
journal = {Bioinform.},
volume = {16},
number = {5},
pages = {439--450},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.5.439},
doi = {10.1093/BIOINFORMATICS/16.5.439},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PesoleLD00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PesoleGCGLLAS00,
author = {Graziano Pesole and
Carmela Gissi and
Domenico Catalano and
Giorgio Grillo and
Flavio Licciulli and
Sabino Liuni and
Marcella Attimonelli and
Cecilia Saccone},
title = {MitoNuc and MitoAln: two related databases of nuclear genes coding
for mitochondrial proteins},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {163--165},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.163},
doi = {10.1093/NAR/28.1.163},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PesoleGCGLLAS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PesoleLGLLMS00,
author = {Graziano Pesole and
Sabino Liuni and
Giorgio Grillo and
Flavio Licciulli and
Alessandra Larizza and
Wojciech Makalowski and
Cecilia Saccone},
title = {UTRdb and UTRsite: specialized databases of sequences and functional
elements of 5' and 3' untranslated regions of eukaryotic mRNAs},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {193--196},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.193},
doi = {10.1093/NAR/28.1.193},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PesoleLGLLMS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PesoleLGILMS99,
author = {Graziano Pesole and
Sabino Liuni and
Giorgio Grillo and
Matilde Ippedico and
Alessandra Larizza and
Wojciech Makalowski and
Cecilia Saccone},
title = {UTRdb: a specialized database of 5' and 3' untranslated regions of
eukaryotic mRNAs},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {188--191},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.188},
doi = {10.1093/NAR/27.1.188},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PesoleLGILMS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PesoleLGS98,
author = {Graziano Pesole and
Sabino Liuni and
Giorgio Grillo and
Cecilia Saccone},
title = {UTRdb: a specialized database of 5'- and 3'-untranslated regions of
eukaryotic mRNAs},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {192--195},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.192},
doi = {10.1093/NAR/26.1.192},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PesoleLGS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrilloALP96,
author = {Giorgio Grillo and
Marcella Attimonelli and
Sabino Liuni and
Graziano Pesole},
title = {{CLEANUP:} a fast computer program for removing redundancies from
nucleotide sequence databases},
journal = {Comput. Appl. Biosci.},
volume = {12},
number = {1},
pages = {1--8},
year = {1996},
url = {https://doi.org/10.1093/bioinformatics/12.1.1},
doi = {10.1093/BIOINFORMATICS/12.1.1},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrilloALP96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/PesoleGL96,
author = {Graziano Pesole and
Giorgio Grillo and
Sabino Liuni},
title = {Databases of {MRNA} Untranslated Regions for Metazoa},
journal = {Comput. Chem.},
volume = {20},
number = {1},
pages = {141--144},
year = {1996},
url = {https://doi.org/10.1016/S0097-8485(96)80016-7},
doi = {10.1016/S0097-8485(96)80016-7},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/PesoleGL96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrunellaLAP93,
author = {N. Prunella and
Sabino Liuni and
Marcella Attimonelli and
Graziano Pesole},
title = {{FASTPAT:} a fast and efficient algorithm for string searching in
{DNA} sequences},
journal = {Comput. Appl. Biosci.},
volume = {9},
number = {5},
pages = {541--545},
year = {1993},
url = {https://doi.org/10.1093/bioinformatics/9.5.541},
doi = {10.1093/BIOINFORMATICS/9.5.541},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrunellaLAP93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuniPPDSD93,
author = {Sabino Liuni and
N. Prunella and
Graziano Pesole and
Tiziana D'Orazio and
Ettore Stella and
Arcangelo Distante},
title = {{SIMD} parallelization of the {WORDUP} algorithm for detecting statistically
significant patterns in {DNA} sequences},
journal = {Comput. Appl. Biosci.},
volume = {9},
number = {6},
pages = {701--707},
year = {1993},
url = {https://doi.org/10.1093/bioinformatics/9.6.701},
doi = {10.1093/BIOINFORMATICS/9.6.701},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuniPPDSD93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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