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ORCIDBibTeX records: Andrey Rzhetsky
@article{DBLP:journals/ncs/JiaLZWPAELTAMKI23,
author = {Gengjie Jia and
Yu Li and
Xue Zhong and
Kanix Wang and
Milton Pividori and
Rabab Alomairy and
Aniello Esposito and
Hatem Ltaief and
Chikashi Terao and
Masato Akiyama and
Koichi Matsuda and
David E. Keyes and
Hae Kyung Im and
Takashi Gojobori and
Yoichiro Kamatani and
Michiaki Kubo and
Nancy J. Cox and
James A. Evans and
Xin Gao and
Andrey Rzhetsky},
title = {The high-dimensional space of human diseases built from diagnosis
records and mapped to genetic loci},
journal = {Nat. Comput. Sci.},
volume = {3},
number = {5},
pages = {403--417},
year = {2023},
url = {https://doi.org/10.1038/s43588-023-00453-y},
doi = {10.1038/S43588-023-00453-Y},
timestamp = {Fri, 10 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ncs/JiaLZWPAELTAMKI23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ncs/JiaLZWPAELTAMKI23a,
author = {Gengjie Jia and
Yu Li and
Xue Zhong and
Kanix Wang and
Milton Pividori and
Rabab Alomairy and
Aniello Esposito and
Hatem Ltaief and
Chikashi Terao and
Masato Akiyama and
Koichi Matsuda and
David E. Keyes and
Hae Kyung Im and
Takashi Gojobori and
Yoichiro Kamatani and
Michiaki Kubo and
Nancy J. Cox and
James A. Evans and
Xin Gao and
Andrey Rzhetsky},
title = {Author Correction: The high-dimensional space of human diseases built
from diagnosis records and mapped to genetic loci},
journal = {Nat. Comput. Sci.},
volume = {3},
number = {7},
pages = {658},
year = {2023},
url = {https://doi.org/10.1038/s43588-023-00488-1},
doi = {10.1038/S43588-023-00488-1},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ncs/JiaLZWPAELTAMKI23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/BelikovRE22,
author = {Alexander V. Belikov and
Andrey Rzhetsky and
James A. Evans},
title = {Prediction of robust scientific facts from literature},
journal = {Nat. Mach. Intell.},
volume = {4},
number = {5},
pages = {445--454},
year = {2022},
url = {https://doi.org/10.1038/s42256-022-00474-8},
doi = {10.1038/S42256-022-00474-8},
timestamp = {Sat, 10 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/BelikovRE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MatthewsSKLBIISWBKBRT22,
author = {Jonathan M. Matthews and
Brooke Schuster and
Sara Saheb Kashaf and
Ping Liu and
Rakefet Ben{-}Yishay and
Dana Ishay{-}Ronen and
Evgeny Izumchenko and
Le Shen and
Christopher R. Weber and
Margaret Bielski and
Sonia S. Kupfer and
Mustafa Bilgic and
Andrey Rzhetsky and
Savas Tay},
title = {OrganoID: {A} versatile deep learning platform for tracking and analysis
of single-organoid dynamics},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {11},
pages = {1010584},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010584},
doi = {10.1371/JOURNAL.PCBI.1010584},
timestamp = {Sat, 27 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MatthewsSKLBIISWBKBRT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LongCLR21,
author = {Yanan Long and
Qi Chen and
Henrik Larsson and
Andrey Rzhetsky},
title = {Observable variations in human sex ratio at birth},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {12},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1009586},
doi = {10.1371/JOURNAL.PCBI.1009586},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LongCLR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigdataconf/ZhangY0QPRB21,
author = {Chao Zhang and
Jaswanth K. Yella and
Yu Huang and
Xiaoye Qian and
Sergei Petrov and
Andrey Rzhetsky and
Sthitie Bom},
editor = {Yixin Chen and
Heiko Ludwig and
Yicheng Tu and
Usama M. Fayyad and
Xingquan Zhu and
Xiaohua Hu and
Suren Byna and
Xiong Liu and
Jianping Zhang and
Shirui Pan and
Vagelis Papalexakis and
Jianwu Wang and
Alfredo Cuzzocrea and
Carlos Ordonez},
title = {Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word},
booktitle = {2021 {IEEE} International Conference on Big Data (Big Data), Orlando,
FL, USA, December 15-18, 2021},
pages = {1999--2008},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BigData52589.2021.9671925},
doi = {10.1109/BIGDATA52589.2021.9671925},
timestamp = {Fri, 13 Jan 2023 17:06:49 +0100},
biburl = {https://dblp.org/rec/conf/bigdataconf/ZhangY0QPRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-15127,
author = {Chao Zhang and
Hanxin Zhang and
Atif Ali Khan and
Ted Kim and
Olasubomi Omoleye and
Oluwamayomikun Abiona and
Amy Lehman and
Christopher O. Olopade and
Olufunmilayo I. Olopade and
Pedro Lopes and
Andrey Rzhetsky},
title = {Lightweight Mobile Automated Assistant-to-physician for Global Lower-resource
Areas},
journal = {CoRR},
volume = {abs/2110.15127},
year = {2021},
url = {https://arxiv.org/abs/2110.15127},
eprinttype = {arXiv},
eprint = {2110.15127},
timestamp = {Tue, 02 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-15127.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-05973,
author = {Chao Zhang and
Jaswanth K. Yella and
Yu Huang and
Xiaoye Qian and
Sergei Petrov and
Andrey Rzhetsky and
Sthitie Bom},
title = {Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word},
journal = {CoRR},
volume = {abs/2111.05973},
year = {2021},
url = {https://arxiv.org/abs/2111.05973},
eprinttype = {arXiv},
eprint = {2111.05973},
timestamp = {Fri, 28 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-05973.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ZhangDKER20,
author = {Hanxin Zhang and
Torsten Dahl{\'{e}}n and
Atif Ali Khan and
Gustaf Edgren and
Andrey Rzhetsky},
title = {Measurable health effects associated with the daylight saving time
shift},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {6},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1007927},
doi = {10.1371/JOURNAL.PCBI.1007927},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ZhangDKER20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-09985,
author = {Alexander V. Belikov and
Andrey Rzhetsky and
James A. Evans},
title = {Detecting signal from science: The structure of research communities
and prior knowledge improves prediction of genetic regulatory experiments},
journal = {CoRR},
volume = {abs/2008.09985},
year = {2020},
url = {https://arxiv.org/abs/2008.09985},
eprinttype = {arXiv},
eprint = {2008.09985},
timestamp = {Fri, 28 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-09985.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KhachatrianNHGH19,
author = {Hrant Khachatrian and
Lilit Nersisyan and
Karen Hambardzumyan and
Tigran Galstyan and
Anna Hakobyan and
Arsen Arakelyan and
Andrey Rzhetsky and
Aram Galstyan},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {BioRelEx 1.0: Biological Relation Extraction Benchmark},
booktitle = {Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL
2019, Florence, Italy, August 1, 2019},
pages = {176--190},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/w19-5019},
doi = {10.18653/V1/W19-5019},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KhachatrianNHGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KimGR18,
author = {Ji{-}Sung Kim and
Xin Gao and
Andrey Rzhetsky},
title = {{RIDDLE:} Race and ethnicity Imputation from Disease history with
Deep LEarning},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {4},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1006106},
doi = {10.1371/JOURNAL.PCBI.1006106},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KimGR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-05042,
author = {Valentin Danchev and
Andrey Rzhetsky and
James A. Evans},
title = {Centralized "big science" communities more likely generate
non-replicable results},
journal = {CoRR},
volume = {abs/1801.05042},
year = {2018},
url = {http://arxiv.org/abs/1801.05042},
eprinttype = {arXiv},
eprint = {1801.05042},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-05042.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KimR17aa,
author = {Ji{-}Sung Kim and
Andrey Rzhetsky},
title = {{RIDDLE:} Race and ethnicity Imputation from Disease history with
Deep LEarning},
journal = {CoRR},
volume = {abs/1707.01623},
year = {2017},
url = {http://arxiv.org/abs/1707.01623},
eprinttype = {arXiv},
eprint = {1707.01623},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/KimR17aa.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/rcdl/Rzhetsky16,
author = {Andrey Rzhetsky},
editor = {Leonid A. Kalinichenko and
Yannis Manolopoulos and
Sergei O. Kuznetsov},
title = {The Big Mechanism Program: Changing How Science Is Done},
booktitle = {Selected Papers of the {XVIII} International Conference on Data Analytics
and Management in Data Intensive Domains {(DAMDID/RCDL} 2016), Ershovo,
Moscow Region, Russia, October 11-14, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1752},
pages = {1--2},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1752/paper01.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:54 +0100},
biburl = {https://dblp.org/rec/conf/rcdl/Rzhetsky16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiuTLWMRSWCCLCZ14,
author = {Chun{-}Chi Liu and
Yu{-}Ting Tseng and
Wenyuan Li and
Chia{-}Yu Wu and
Ilya Mayzus and
Andrey Rzhetsky and
Fengzhu Sun and
Michael S. Waterman and
Jeremy J. W. Chen and
Preet M. Chaudhary and
Joseph Loscalzo and
Edward Crandall and
Xianghong Jasmine Zhou},
title = {DiseaseConnect: a comprehensive web server for mechanism-based disease-disease
connections},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {137--146},
year = {2014},
url = {https://doi.org/10.1093/nar/gku412},
doi = {10.1093/NAR/GKU412},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiuTLWMRSWCCLCZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RzhetskyBWLCAG14,
author = {Andrey Rzhetsky and
Steven C. Bagley and
Kanix Wang and
Christopher S. Lyttle and
Edwin H. Cook Jr. and
Russ B. Altman and
Robert D. Gibbons},
title = {Environmental and State-Level Regulatory Factors Affect the Incidence
of Autism and Intellectual Disability},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {3},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003518},
doi = {10.1371/JOURNAL.PCBI.1003518},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RzhetskyBWLCAG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BlairWNER14,
author = {David R. Blair and
Kanix Wang and
Svetlozar Nestorov and
James A. Evans and
Andrey Rzhetsky},
title = {Quantifying the Impact and Extent of Undocumented Biomedical Synonymy},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {9},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003799},
doi = {10.1371/JOURNAL.PCBI.1003799},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BlairWNER14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaRGK13,
author = {Larisa N. Soldatova and
Andrey Rzhetsky and
Kurt De Grave and
Ross D. King},
title = {Representation of probabilistic scientific knowledge},
journal = {J. Biomed. Semant.},
volume = {4},
number = {{S-1}},
pages = {S7},
year = {2013},
url = {http://www.jbiomedsem.com/content/4/S1/S7},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaRGK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1302-6906,
author = {Jacob G. Foster and
Andrey Rzhetsky and
James A. Evans},
title = {Tradition and Innovation in Scientists' Research Strategies},
journal = {CoRR},
volume = {abs/1302.6906},
year = {2013},
url = {http://arxiv.org/abs/1302.6906},
eprinttype = {arXiv},
eprint = {1302.6906},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1302-6906.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/YuGR12,
author = {Shi Yu and
Robert Grossman and
Andrey Rzhetsky},
title = {Global and Local Approach of Part-of-Speech Tagging for Large Corpora},
booktitle = {Information Retrieval and Knowledge Discovery in Biomedical Text,
Papers from the 2012 {AAAI} Fall Symposium, Arlington, Virginia, USA,
November 2-4, 2012},
series = {{AAAI} Technical Report},
volume = {{FS-12-05}},
publisher = {{AAAI}},
year = {2012},
url = {http://www.aaai.org/ocs/index.php/FSS/FSS12/paper/view/5638},
timestamp = {Tue, 08 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aaaifs/YuGR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaR11,
author = {Larisa N. Soldatova and
Andrey Rzhetsky},
title = {Representation of research hypotheses},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-2}},
pages = {S9},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S2/S9},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/YaoDMER11,
author = {Lixia Yao and
Anna Divoli and
Ilya Mayzus and
James A. Evans and
Andrey Rzhetsky},
title = {Benchmarking Ontologies: Bigger or Better?},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {1},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1001055},
doi = {10.1371/JOURNAL.PCBI.1001055},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/YaoDMER11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RzhetskyE11,
author = {Andrey Rzhetsky and
James A. Evans},
title = {War of Ontology Worlds: Mathematics, Computer Code, or Esperanto?},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {9},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002191},
doi = {10.1371/JOURNAL.PCBI.1002191},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RzhetskyE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DivoliMER11,
author = {Anna Divoli and
Eneida A. Mendon{\c{c}}a and
James A. Evans and
Andrey Rzhetsky},
title = {Conflicting Biomedical Assumptions for Mathematical Modeling: The
Case of Cancer Metastasis},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {10},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002132},
doi = {10.1371/JOURNAL.PCBI.1002132},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/DivoliMER11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aime/Rzhetsky11,
author = {Andrey Rzhetsky},
editor = {Mor Peleg and
Nada Lavrac and
Carlo Combi},
title = {Understanding Etiology of Complex Neurodevelopmental Disorders: Two
Approaches},
booktitle = {Artificial Intelligence in Medicine - 13th Conference on Artificial
Intelligence in Medicine, {AIME} 2011, Bled, Slovenia, July 2-6, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6747},
pages = {1},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-22218-4\_1},
doi = {10.1007/978-3-642-22218-4\_1},
timestamp = {Mon, 16 Sep 2019 15:30:05 +0200},
biburl = {https://dblp.org/rec/conf/aime/Rzhetsky11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/BalkirFR11,
author = {Atilla Soner Balkir and
Ian T. Foster and
Andrey Rzhetsky},
editor = {Arthur B. Maccabe and
Douglas Thain},
title = {A distributed look-up architecture for text mining applications using
mapreduce},
booktitle = {Proceedings of the 20th {ACM} International Symposium on High Performance
Distributed Computing, {HPDC} 2011, San Jose, CA, USA, June 8-11,
2011},
pages = {279--280},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/1996130.1996174},
doi = {10.1145/1996130.1996174},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/BalkirFR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/BalkirFR11,
author = {Atilla Soner Balkir and
Ian T. Foster and
Andrey Rzhetsky},
editor = {Scott A. Lathrop and
Jim Costa and
William Kramer},
title = {A distributed look-up architecture for text mining applications using
MapReduce},
booktitle = {Conference on High Performance Computing Networking, Storage and Analysis,
{SC} 2011, Seattle, WA, USA, November 12-18, 2011},
pages = {59:1--59:11},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2063384.2063463},
doi = {10.1145/2063384.2063463},
timestamp = {Fri, 03 Jul 2020 08:57:23 +0200},
biburl = {https://dblp.org/rec/conf/sc/BalkirFR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2011,
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
publisher = {{ACM}},
year = {2011},
url = {http://dl.acm.org/citation.cfm?id=2147805},
isbn = {978-1-4503-0796-3},
timestamp = {Sun, 11 Nov 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/WaxmonskyGR10,
author = {Sonjia Waxmonsky and
John Goldsmith and
Andrey Rzhetsky},
editor = {Sorin Draghici and
Taghi M. Khoshgoftaar and
Vasile Palade and
Witold Pedrycz and
M. Arif Wani and
Xingquan Zhu},
title = {Discovering and Counting Biomedical Verbs},
booktitle = {The Ninth International Conference on Machine Learning and Applications,
{ICMLA} 2010, Washington, DC, USA, 12-14 December 2010},
pages = {975--978},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/ICMLA.2010.155},
doi = {10.1109/ICMLA.2010.155},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/WaxmonskyGR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RzhetskySW09,
author = {Andrey Rzhetsky and
Hagit Shatkay and
W. John Wilbur},
title = {How to Get the Most out of Your Curation Effort},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {5},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000391},
doi = {10.1371/JOURNAL.PCBI.1000391},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RzhetskySW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RzhetskySG09,
author = {Andrey Rzhetsky and
Michael R. Seringhaus and
Mark B. Gerstein},
title = {Getting Started in Text Mining: Part Two},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {7},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000411},
doi = {10.1371/JOURNAL.PCBI.1000411},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RzhetskySG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/IossifovRMMR09,
author = {Ivan Iossifov and
Raul Rodriguez{-}Esteban and
Ilya Mayzus and
Kathleen J. Millen and
Andrey Rzhetsky},
title = {Looking at Cerebellar Malformations through Text-Mined Interactomes
of Mice and Humans},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {11},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000559},
doi = {10.1371/JOURNAL.PCBI.1000559},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/IossifovRMMR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShatkayPRW08,
author = {Hagit Shatkay and
Fengxia Pan and
Andrey Rzhetsky and
W. John Wilbur},
title = {Multi-dimensional classification of biomedical text: Toward automated,
practical provision of high-utility text to diverse users},
journal = {Bioinform.},
volume = {24},
number = {18},
pages = {2086--2093},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn381},
doi = {10.1093/BIOINFORMATICS/BTN381},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShatkayPRW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YaoR08,
author = {Lixia Yao and
Andrey Rzhetsky},
title = {Quantitative systems-level determinants of drug targets},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-10}},
year = {2008},
url = {http://www.biomedcentral.com/1471-2105/9/S10/P6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YaoR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilburRS06,
author = {W. John Wilbur and
Andrey Rzhetsky and
Hagit Shatkay},
title = {New directions in biomedical text annotation: definitions, guidelines
and corpus construction},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {356},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-356},
doi = {10.1186/1471-2105-7-356},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WilburRS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Rodriguez-EstebanIR06,
author = {Raul Rodriguez{-}Esteban and
Ivan Iossifov and
Andrey Rzhetsky},
title = {Imitating Manual Curation of Text-Mined Facts in Biomedicine},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {9},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020118},
doi = {10.1371/JOURNAL.PCBI.0020118},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Rodriguez-EstebanIR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/Rzhetsky06,
author = {Andrey Rzhetsky},
editor = {Karin Verspoor and
Kevin Bretonnel Cohen and
Ben Goertzel and
Inderjeet Mani},
title = {Mining biomedical texts for disease-related pathways},
booktitle = {Proceedings of the Workshop on Linking Natural Language and Biology,
BioNLP@NAACL-HLT 2006, New York, NY, USA, June 8, 2006},
pages = {81},
publisher = {Association for Computational Linguistics},
year = {2006},
url = {https://aclanthology.org/W06-3311/},
timestamp = {Thu, 17 Feb 2022 16:43:16 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/Rzhetsky06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorodovskyRF05,
author = {Mark Borodovsky and
Andrey Rzhetsky and
Dmitrij Frishman},
title = {The Fifth Georgia Tech - Oak Ridge National Laboratory International
Conference in Bioinformatics: \emph{in silico} Biology, Computational
Genomics and Evolutionary Biology},
journal = {Bioinform.},
volume = {21},
number = {{S3}},
pages = {1},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1207},
doi = {10.1093/BIOINFORMATICS/BTI1207},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorodovskyRF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IossifovKFHBWR04,
author = {Ivan Iossifov and
Michael Krauthammer and
Carol Friedman and
Vasileios Hatzivassiloglou and
Joel S. Bader and
Kevin P. White and
Andrey Rzhetsky},
title = {Probabilistic inference of molecular networks from noisy data sources},
journal = {Bioinform.},
volume = {20},
number = {8},
pages = {1205--1213},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth061},
doi = {10.1093/BIOINFORMATICS/BTH061},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IossifovKFHBWR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RzhetskyIKKKMYDWW04,
author = {Andrey Rzhetsky and
Ivan Iossifov and
Tomohiro Koike and
Michael Krauthammer and
Pauline Kra and
Mitzi Morris and
Hong Yu and
Pablo Ariel Dubou{\'{e}} and
Wubin Weng and
W. John Wilbur},
title = {GeneWays: a system for extracting, analyzing, visualizing, and integrating
molecular pathway data},
journal = {J. Biomed. Informatics},
volume = {37},
number = {1},
pages = {43--53},
year = {2004},
url = {https://doi.org/10.1016/j.jbi.2003.10.001},
doi = {10.1016/J.JBI.2003.10.001},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/RzhetskyIKKKMYDWW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GomezNR03,
author = {Shawn M. Gomez and
William Stafford Noble and
Andrey Rzhetsky},
title = {Learning to predict protein-protein interactions from protein sequences},
journal = {Bioinform.},
volume = {19},
number = {15},
pages = {1875--1881},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg352},
doi = {10.1093/BIOINFORMATICS/BTG352},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GomezNR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/FriedmanKR02,
author = {Carol Friedman and
Pauline Kra and
Andrey Rzhetsky},
title = {Two biomedical sublanguages: a description based on the theories of
Zellig Harris},
journal = {J. Biomed. Informatics},
volume = {35},
number = {4},
pages = {222--235},
year = {2002},
url = {https://doi.org/10.1016/S1532-0464(03)00012-1},
doi = {10.1016/S1532-0464(03)00012-1},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/FriedmanKR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/YuHRW02,
author = {Hong Yu and
Vasileios Hatzivassiloglou and
Andrey Rzhetsky and
W. John Wilbur},
title = {Automatically identifying gene/protein terms in {MEDLINE} abstracts},
journal = {J. Biomed. Informatics},
volume = {35},
number = {5-6},
pages = {322--330},
year = {2002},
url = {https://doi.org/10.1016/S1532-0464(03)00032-7},
doi = {10.1016/S1532-0464(03)00032-7},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/YuHRW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuHFRW02,
author = {Hong Yu and
Vasileios Hatzivassiloglou and
Carol Friedman and
Andrey Rzhetsky and
W. John Wilbur},
title = {Automatic extraction of gene and protein synonyms from {MEDLINE} and
journal articles},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-185-1.612693/a-186-1.612690},
timestamp = {Wed, 17 Apr 2024 11:48:33 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuHFRW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KrauthammerKIGHHFR02,
author = {Michael Krauthammer and
Pauline Kra and
Ivan Iossifov and
Shawn M. Gomez and
George Hripcsak and
Vasileios Hatzivassiloglou and
Carol Friedman and
Andrey Rzhetsky},
title = {Of truth and pathways: chasing bits of information through myriads
of articles},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {249--257},
year = {2002},
timestamp = {Wed, 29 Jun 2011 14:55:41 +0200},
biburl = {https://dblp.org/rec/conf/ismb/KrauthammerKIGHHFR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GomezR02,
author = {Shawn M. Gomez and
Andrey Rzhetsky},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Towards the Prediction of Complete Protein-Protein Interaction Networks},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {413--424},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/gomez.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/GomezR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RzhetskyG01,
author = {Andrey Rzhetsky and
Shawn M. Gomez},
title = {Birth of scale-free molecular networks and the number of distinct
{DNA} and protein domains per genome},
journal = {Bioinform.},
volume = {17},
number = {10},
pages = {988--996},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.10.988},
doi = {10.1093/BIOINFORMATICS/17.10.988},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RzhetskyG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/RzhetskyKKKGYDWJHF01,
author = {Andrey Rzhetsky and
Michael Krauthammer and
Tomohiro Koike and
Pauline Kra and
Shawn M. Gomez and
Hong Yu and
Pablo Ariel Dubou{\'{e}} and
Wubin Weng and
Stephen B. Johnson and
Vasileios Hatzivassiloglou and
Carol Friedman},
editor = {Edgar Wingender},
title = {GeneWays: {A} System for Mining Text and for Integrating Data on Molecular
Pathways},
booktitle = {Computer science and biology: Proceedings of the German Conference
on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
pages = {2--5},
publisher = {German Research Center for Biotechnology},
year = {2001},
timestamp = {Sat, 21 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/RzhetskyKKKGYDWJHF01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/FriedmanKYKR01,
author = {Carol Friedman and
Pauline Kra and
Hong Yu and
Michael Krauthammer and
Andrey Rzhetsky},
title = {{GENIES:} a natural-language processing system for the extraction
of molecular pathways from journal articles},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {74--82},
year = {2001},
timestamp = {Sat, 21 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/FriedmanKYKR01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HatzivassiloglouDR01,
author = {Vasileios Hatzivassiloglou and
Pablo Ariel Dubou{\'{e}} and
Andrey Rzhetsky},
title = {Disambiguating proteins, genes, and {RNA} in text: a machine learning
approach},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {97--106},
year = {2001},
timestamp = {Thu, 06 Jul 2006 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/HatzivassiloglouDR01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/RzhetskyM01,
author = {Andrey Rzhetsky and
Pavel Morozov},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate
Variation in Proteins},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {203--214},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/rzhetsky.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/RzhetskyM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RzhetskyKKGKKKRF00,
author = {Andrey Rzhetsky and
Tomohiro Koike and
Sergey Kalachikov and
Shawn M. Gomez and
Michael Krauthammer and
Sabina H. Kaplan and
Pauline Kra and
James J. Russo and
Carol Friedman},
title = {A knowledge model for analysis and simulation of regulatory networks},
journal = {Bioinform.},
volume = {16},
number = {12},
pages = {1120--1128},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.12.1120},
doi = {10.1093/BIOINFORMATICS/16.12.1120},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RzhetskyKKGKKKRF00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KrauthammerRMF00,
author = {Michael Krauthammer and
Andrey Rzhetsky and
Pavel Morozov and
Carol Friedman},
title = {Using BLAST, {A} {DNA} and Protein Sequence Comparison Tool, for Finding
Gene and Protein Names in Journal Articles},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-002-1.608710/f-001-1.608711/a-300-1.609074/a-301-1.609071},
timestamp = {Wed, 17 Apr 2024 11:48:44 +0200},
biburl = {https://dblp.org/rec/conf/amia/KrauthammerRMF00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RzhetskyKKKF99,
author = {Andrey Rzhetsky and
Tomohiro Koike and
Sergey Kalachikov and
Pauline Kra and
Carol Friedman},
title = {A Knowledge Model for Analysis and Simulation of Regulatory Based
on Information in Electronic Publications},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-002-1.592771/f-001-1.592772/a-346-1.592922/a-347-1.592919},
timestamp = {Wed, 17 Apr 2024 11:48:49 +0200},
biburl = {https://dblp.org/rec/conf/amia/RzhetskyKKKF99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuFRK99,
author = {Hong Yu and
Carol Friedman and
Andrey Rzhetsky and
Pauline Kra},
title = {Representing genomic knowledge in the {UMLS} semantic network},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-001-1.593353/f-001-1.593354/a-036-1.593859/a-037-1.593856},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuFRK99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dimacs/dimacs37,
editor = {Boris G. Mirkin and
Fred R. McMorris and
Fred S. Roberts and
Andrey Rzhetsky},
title = {Mathematical Hierarchies and Biology, Proceedings of a {DIMACS} Workshop,
November 13-15, 1996},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {37},
publisher = {{DIMACS/AMS}},
year = {1997},
url = {https://doi.org/10.1090/dimacs/037},
doi = {10.1090/DIMACS/037},
isbn = {978-0-8218-0762-0},
timestamp = {Mon, 22 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/dimacs37.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dimacs/RzhetskyAHCY96,
author = {Andrey Rzhetsky and
Francisco Jos{\'{e}} Ayala and
Lily C. Hsu and
Cheng Chang and
Akira Yoshida},
editor = {Boris G. Mirkin and
Fred R. McMorris and
Fred S. Roberts and
Andrey Rzhetsky},
title = {Fitting models of intron evolution to aldehyde dehydrogenase data},
booktitle = {Mathematical Hierarchies and Biology, Proceedings of a {DIMACS} Workshop,
November 13-15, 1996},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {37},
pages = {95--110},
publisher = {{DIMACS/AMS}},
year = {1996},
url = {https://doi.org/10.1090/dimacs/037/06},
doi = {10.1090/DIMACS/037/06},
timestamp = {Mon, 22 May 2023 16:07:35 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/RzhetskyAHCY96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RzhetskyN94,
author = {Andrey Rzhetsky and
Masatoshi Nei},
title = {{METREE:} a program package for inferring and testing minimum-evolution
trees},
journal = {Comput. Appl. Biosci.},
volume = {10},
number = {4},
pages = {409--412},
year = {1994},
url = {https://doi.org/10.1093/bioinformatics/10.4.409},
doi = {10.1093/BIOINFORMATICS/10.4.409},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RzhetskyN94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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