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ORCIDBibTeX records: Neil Swainston
@article{DBLP:journals/jcheminf/KhemchandaniOSS20,
author = {Yash Khemchandani and
Stephen O'Hagan and
Soumitra Samanta and
Neil Swainston and
Timothy J. Roberts and
Danushka Bollegala and
Douglas B. Kell},
title = {DeepGraphMolGen, a multi-objective, computational strategy for generating
molecules with desirable properties: a graph convolution and reinforcement
learning approach},
journal = {J. Cheminformatics},
volume = {12},
number = {1},
pages = {53},
year = {2020},
url = {https://doi.org/10.1186/s13321-020-00454-3},
doi = {10.1186/S13321-020-00454-3},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/KhemchandaniOSS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarbonellWSTTSK18,
author = {Pablo Carbonell and
Jerry Wong and
Neil Swainston and
Eriko Takano and
Nicholas J. Turner and
Nigel S. Scrutton and
Douglas B. Kell and
Rainer Breitling and
Jean{-}Loup Faulon},
title = {Selenzyme: enzyme selection tool for pathway design},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2153--2154},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty065},
doi = {10.1093/BIOINFORMATICS/BTY065},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarbonellWSTTSK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwainstonDJRCWF18,
author = {Neil Swainston and
Mark Dunstan and
Adrian J. Jervis and
Christopher J. Robinson and
Pablo Carbonell and
Alan R. Williams and
Jean{-}Loup Faulon and
Nigel S. Scrutton and
Douglas B. Kell},
title = {PartsGenie: an integrated tool for optimizing and sharing synthetic
biology parts},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2327--2329},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty105},
doi = {10.1093/BIOINFORMATICS/BTY105},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwainstonDJRCWF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/SwainstonCGBDK17,
author = {Neil Swainston and
Andrew Currin and
Lucy Green and
Rainer Breitling and
Philip J. Day and
Douglas B. Kell},
title = {CodonGenie: optimised ambiguous codon design tools},
journal = {PeerJ Comput. Sci.},
volume = {3},
pages = {e120},
year = {2017},
url = {https://doi.org/10.7717/peerj-cs.120},
doi = {10.7717/PEERJ-CS.120},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerj-cs/SwainstonCGBDK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/SwainstonCGBDK17,
author = {Neil Swainston and
Andrew Currin and
Lucy Green and
Rainer Breitling and
Philip J. Day and
Douglas B. Kell},
title = {CodonGenie: optimised ambiguous codon design tools},
journal = {PeerJ Prepr.},
volume = {5},
pages = {e2797},
year = {2017},
url = {https://doi.org/10.7287/peerj.preprints.2797v1},
doi = {10.7287/PEERJ.PREPRINTS.2797V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/SwainstonCGBDK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/SwainstonHDMMSM16,
author = {Neil Swainston and
Janna Hastings and
Adriano Dekker and
Venkatesh Muthukrishnan and
John W. May and
Christoph Steinbeck and
Pedro Mendes},
title = {libChEBI: an {API} for accessing the ChEBI database},
journal = {J. Cheminformatics},
volume = {8},
number = {1},
pages = {11:1--11:6},
year = {2016},
url = {https://doi.org/10.1186/s13321-016-0123-9},
doi = {10.1186/S13321-016-0123-9},
timestamp = {Tue, 05 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/SwainstonHDMMSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HastingsODEKMTS16,
author = {Janna Hastings and
Gareth I. Owen and
Adriano Dekker and
Marcus Ennis and
Namrata Kale and
Venkatesh Muthukrishnan and
Steve Turner and
Neil Swainston and
Pedro Mendes and
Christoph Steinbeck},
title = {ChEBI in 2016: Improved services and an expanding collection of metabolites},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1214--1219},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1031},
doi = {10.1093/NAR/GKV1031},
timestamp = {Fri, 24 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HastingsODEKMTS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HastingsSMKDOTM15,
author = {Janna Hastings and
Neil Swainston and
Venkatesh Muthukrishnan and
Namrata Kale and
Adriano Dekker and
Gareth I. Owen and
Steve Turner and
Pedro Mendes and
Christoph Steinbeck},
editor = {Francisco M. Couto and
Janna Hastings},
title = {ChEBI for systems biology and metabolic modelling},
booktitle = {Proceedings of the International Conference on Biomedical Ontology,
{ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1515},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1515/poster7.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HastingsSMKDOTM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SwainstonCDK14,
author = {Neil Swainston and
Andrew Currin and
Philip J. Day and
Douglas B. Kell},
title = {GeneGenie: optimized oligomer design for directed evolution},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {395--400},
year = {2014},
url = {https://doi.org/10.1093/nar/gku336},
doi = {10.1093/NAR/GKU336},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SwainstonCDK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13,
author = {Finja B{\"{u}}chel and
Nicolas Rodriguez and
Neil Swainston and
Clemens Wrzodek and
Tobias Czauderna and
Roland Keller and
Florian Mittag and
Michael Schubert and
Mihai Glont and
Martin Golebiewski and
Martijn P. van Iersel and
Sarah M. Keating and
Matthias Rall and
Michael Wybrow and
Henning Hermjakob and
Michael Hucka and
Douglas B. Kell and
Wolfgang M{\"{u}}ller and
Pedro Mendes and
Andreas Zell and
Claudine Chaouiya and
Julio Saez{-}Rodriguez and
Falk Schreiber and
Camille Laibe and
Andreas Dr{\"{a}}ger and
Nicolas Le Nov{\`{e}}re},
title = {Path2Models: large-scale generation of computational models from biochemical
pathway maps},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {116},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-116},
doi = {10.1186/1752-0509-7-116},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeSDMWKMS12,
author = {Dave Lee and
Kieran Smallbone and
Warwick B. Dunn and
Ettore Murabito and
Catherine Winder and
Douglas B. Kell and
Pedro Mendes and
Neil Swainston},
title = {Improving metabolic flux predictions using absolute gene expression
data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {73},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-73},
doi = {10.1186/1752-0509-6-73},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeSDMWKMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ThieleHSFABCCFHKLMMORRSSSSSTZPAB11,
author = {Ines Thiele and
Daniel R. Hyduke and
Benjamin Steeb and
Guy Fankam and
Douglas K. Allen and
Susanna Bazzani and
Pep Charusanti and
Feng{-}Chi Chen and
Ronan M. T. Fleming and
Chao A. Hsiung and
Sigrid C. J. De Keersmaecker and
Yu{-}Chieh Liao and
Kathleen Marchal and
Monica L. Mo and
Emre {\"{O}}zdemir and
Anu Raghunathan and
Jennifer L. Reed and
Sook{-}Il Shin and
Sara Sigurbj{\"{o}}rnsd{\'{o}}ttir and
Jonas Steinmann and
Suresh Sudarsan and
Neil Swainston and
Inge M. Thijs and
Karsten Zengler and
Bernhard O. Palsson and
Joshua N. Adkins and
Dirk Bumann},
title = {A community effort towards a knowledge-base and mathematical model
of the human pathogen Salmonella Typhimurium {LT2}},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {8},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-8},
doi = {10.1186/1752-0509-5-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ThieleHSFABCCFHKLMMORRSSSSSTZPAB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SwainstonSMKP11,
author = {Neil Swainston and
Kieran Smallbone and
Pedro Mendes and
Douglas B. Kell and
Norman W. Paton},
title = {The SuBliMinaL Toolbox: automating steps in the reconstruction of
metabolic networks},
journal = {J. Integr. Bioinform.},
volume = {8},
number = {2},
year = {2011},
url = {https://doi.org/10.2390/biecoll-jib-2011-186},
doi = {10.2390/BIECOLL-JIB-2011-186},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SwainstonSMKP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiDJSSCDKMMSWWWBGGKWMP10,
author = {Peter Li and
Joseph O. Dada and
Daniel Jameson and
Irena Spasic and
Neil Swainston and
Kathleen Carroll and
Warwick B. Dunn and
Farid Khan and
Naglis Malys and
Hanan L. Messiha and
Evangelos Simeonidis and
Dieter Weichart and
Catherine Winder and
Jill Wishart and
David S. Broomhead and
Carole A. Goble and
Simon J. Gaskell and
Douglas B. Kell and
Hans V. Westerhoff and
Pedro Mendes and
Norman W. Paton},
title = {Systematic integration of experimental data and models in systems
biology},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {582},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-582},
doi = {10.1186/1471-2105-11-582},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiDJSSCDKMMSWWWBGGKWMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SmallboneSSM10,
author = {Kieran Smallbone and
Evangelos Simeonidis and
Neil Swainston and
Pedro Mendes},
title = {Towards a genome-scale kinetic model of cellular metabolism},
journal = {{BMC} Syst. Biol.},
volume = {4},
pages = {6},
year = {2010},
url = {https://doi.org/10.1186/1752-0509-4-6},
doi = {10.1186/1752-0509-4-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SmallboneSSM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RadrichTDGSBS10,
author = {Karin Radrich and
Yoshimasa Tsuruoka and
Paul D. Dobson and
Albert Gevorgyan and
Neil Swainston and
Gino Baart and
Jean{-}Marc Schwartz},
title = {Integration of metabolic databases for the reconstruction of genome-scale
metabolic networks},
journal = {{BMC} Syst. Biol.},
volume = {4},
pages = {114},
year = {2010},
url = {https://doi.org/10.1186/1752-0509-4-114},
doi = {10.1186/1752-0509-4-114},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RadrichTDGSBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DobsonSJSLPLSDFHBOSKKOSM10,
author = {Paul D. Dobson and
Kieran Smallbone and
Daniel Jameson and
Evangelos Simeonidis and
Karin Lanthaler and
Pinar Pir and
Chuan Lu and
Neil Swainston and
Warwick B. Dunn and
Paul Fisher and
Duncan Hull and
Marie Brown and
Olusegun Oshota and
Natalie J. Stanford and
Douglas B. Kell and
Ross D. King and
Stephen G. Oliver and
Robert D. Stevens and
Pedro Mendes},
title = {Further developments towards a genome-scale metabolic model of yeast},
journal = {{BMC} Syst. Biol.},
volume = {4},
pages = {145},
year = {2010},
url = {https://doi.org/10.1186/1752-0509-4-145},
doi = {10.1186/1752-0509-4-145},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/DobsonSJSLPLSDFHBOSKKOSM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/SwainstonJLSMP10,
author = {Neil Swainston and
Daniel Jameson and
Peter Li and
Irena Spasic and
Pedro Mendes and
Norman W. Paton},
editor = {Patrick Lambrix and
Graham J. L. Kemp},
title = {Integrative Information Management for Systems Biology},
booktitle = {Data Integration in the Life Sciences, 7th International Conference,
{DILS} 2010, Gothenburg, Sweden, August 25-27, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6254},
pages = {164--178},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15120-0\_13},
doi = {10.1007/978-3-642-15120-0\_13},
timestamp = {Tue, 05 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dils/SwainstonJLSMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwainstonM09,
author = {Neil Swainston and
Pedro Mendes},
title = {libAnnotationSBML: a library for exploiting {SBML} annotations},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2292--2293},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp392},
doi = {10.1093/BIOINFORMATICS/BTP392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwainstonM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JamesonTAKRSGSOWKP09,
author = {Daniel Jameson and
David A. Turner and
John Ankers and
Stephnie Kennedy and
Sheila Ryan and
Neil Swainston and
Tony Griffiths and
David G. Spiller and
Stephen G. Oliver and
Michael R. H. White and
Douglas B. Kell and
Norman W. Paton},
title = {Information management for high content live cell imaging},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-226},
doi = {10.1186/1471-2105-10-226},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JamesonTAKRSGSOWKP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SwainstonSJHHJH07,
author = {Neil Swainston and
Jennifer A. Siepen and
Andrew R. Jones and
Sarah R. Hart and
Henning Hermjakob and
Philip Jones and
Simon J. Hubbard},
title = {Pride Wizard: generation of standards compliant quantitative proteomics
data},
journal = {{BMC} Syst. Biol.},
volume = {1},
number = {{S-1}},
pages = {P27},
year = {2007},
url = {https://doi.org/10.1186/1752-0509-1-S1-P27},
doi = {10.1186/1752-0509-1-S1-P27},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SwainstonSJHHJH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GarwoodGHGSOP06,
author = {Kevin L. Garwood and
Christopher Garwood and
Cornelia Hedeler and
Tony Griffiths and
Neil Swainston and
Stephen G. Oliver and
Norman W. Paton},
title = {Model-driven user interfaces for bioinformatics data resources: regenerating
the wheel as an alternative to reinventing it},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {532},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-532},
doi = {10.1186/1471-2105-7-532},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GarwoodGHGSOP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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