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Semantic ScholarSüleyman Cenk Sahinalp
Cenk S. Sahinalp
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- affiliation: Simon Fraser University, Burnaby, Canada
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2010 – today
- 2018
[j46]Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew McPherson, Colin Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp:
Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinformatics 34(10): 1672-1681 (2018)- [j45]Alexander Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune R. Ramnarine, Rohit Malik, Felix Feng, Arul M. Chinnaiyan, Colin Collins, Süleyman Cenk Sahinalp, Rolf Backofen:
MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions. Bioinformatics 34(18): 3101-3110 (2018) - [j44]Makoto Yamada, Jiliang Tang, Jose Lugo-Martinez, Ermin Hodzic, Raunak Shrestha, Avishek Saha, Hua Ouyang, Dawei Yin, Hiroshi Mamitsuka, Süleyman Cenk Sahinalp, Predrag Radivojac, Filippo Menczer, Yi Chang:
Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data. IEEE Trans. Knowl. Data Eng. 30(7): 1352-1365 (2018) - [c55]Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz:
GTED: Graph Traversal Edit Distance. RECOMB 2018: 37-53 - [c54]Salem Malikic, Katharina Jahn, Jack Kuipers, Süleyman Cenk Sahinalp, Niko Beerenwinkel:
Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data. RECOMB 2018: 269-270 - [c53]Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp:
A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression. WABI 2018: 22:1-22:19 - 2017
- [j43]Can Kockan, Faraz Hach, Iman Sarrafi, Robert H. Bell, Brian McConeghy, Kevin Beja, Anne Haegert, Alexander W. Wyatt, Stanislav Volik, Kim N. Chi, Colin Collins, Süleyman Cenk Sahinalp:
SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA. Bioinformatics 33(1): 26-34 (2017) - [j42]Feng Chen, Shuang Wang, Xiaoqian Jiang, Sijie Ding, Yao Lu, Jihoon Kim, Süleyman Cenk Sahinalp, Chisato Shimizu, Jane C. Burns, Victoria J. Wright, Eileen Png, Martin L. Hibberd, David D. Lloyd, Hai Yang, Amalio Telenti, Cinnamon S. Bloss, Dov Fox, Kristin E. Lauter, Lucila Ohno-Machado:
PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. Bioinformatics 33(6): 871-878 (2017) - [j41]Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin Collins, Süleyman Cenk Sahinalp:
Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data. Journal of Computational Biology 24(6): 515-523 (2017) - [e3]Süleyman Cenk Sahinalp:
Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Hong Kong, China, May 3-7, 2017, Proceedings. Lecture Notes in Computer Science 10229, 2017, ISBN 978-3-319-56969-7 [contents] - 2016
- [j40]Ehsan Haghshenas, Faraz Hach, Süleyman Cenk Sahinalp, Cédric Chauve:
CoLoRMap: Correcting Long Reads by Mapping short reads. Bioinformatics 32(17): 545-551 (2016) - [c52]Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin Collins, Süleyman Cenk Sahinalp:
Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data. RECOMB 2016: 83-94 - [r2]Süleyman Cenk Sahinalp:
Edit Distance Under Block Operations. Encyclopedia of Algorithms 2016: 611-614 - 2015
- [j39]Salem Malikic, Andrew W. McPherson, Nilgun Donmez, Cenk S. Sahinalp:
Clonality inference in multiple tumor samples using phylogeny. Bioinformatics 31(9): 1349-1356 (2015) - [j38]Ibrahim Numanagic, Salem Malikic, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp:
Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data. Bioinformatics 31(12): 27-34 (2015) - [c51]Andrew McPherson, Andrew Roth, Cédric Chauve, Süleyman Cenk Sahinalp:
Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. RECOMB 2015: 256-258 - [i2]Andrew McPherson, Andrew Roth, Gavin Ha, Sohrab P. Shah, Cédric Chauve, Süleyman Cenk Sahinalp:
Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples. CoRR abs/1504.03080 (2015) - 2014
- [j37]Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin Collins, Evan E. Eichler, Süleyman Cenk Sahinalp:
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms. Bioinformatics 30(5): 644-651 (2014) - [j36]Faraz Hach, Iman Sarrafi, Farhad Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp:
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications. Nucleic Acids Research 42(Webserver-Issue): 494-500 (2014) - [c50]Raunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas Sauerwald, Phuong Dao, Shawn Anderson, Himisha Beltran, Mark A. Rubin, Colin Collins, Gholamreza Haffari, Süleyman Cenk Sahinalp:
HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time. RECOMB 2014: 293-306 - 2012
- [j35]Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan:
Sensitive and fast mapping of di-base encoded reads. Bioinformatics 28(1): 150 (2012) - [j34]Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp:
Mirroring co-evolving trees in the light of their topologies. Bioinformatics 28(9): 1202-1208 (2012) - [j33]Deniz Yörükoglu, Faraz Hach, Lucas Swanson, Colin Collins, Inanç Birol, Süleyman Cenk Sahinalp:
Dissect: detection and characterization of novel structural alterations in transcribed sequences. Bioinformatics 28(12): 179-187 (2012) - [j32]Faraz Hach, Ibrahim Numanagic, Can Alkan, Süleyman Cenk Sahinalp:
SCALCE: boosting sequence compression algorithms using locally consistent encoding. Bioinformatics 28(23): 3051-3057 (2012) - [c49]Andrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin Collins, Süleyman Cenk Sahinalp:
Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing. RECOMB 2012: 181-182 - [c48]Yen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk, Colin Collins, Süleyman Cenk Sahinalp:
CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population. WABI 2012: 178-189 - 2011
- [j31]Andrew McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin Collins, Süleyman Cenk Sahinalp:
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. Bioinformatics 27(11): 1481-1488 (2011) - [j30]Phuong Dao, Kendric Wang, Colin Collins, Martin Ester, Anna Lapuk, Süleyman Cenk Sahinalp:
Optimally discriminative subnetwork markers predict response to chemotherapy. Bioinformatics [ISMB/ECCB] 27(13): 205-213 (2011) - [j29]Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan:
Sensitive and fast mapping of di-base encoded reads. Bioinformatics 27(14): 1915-1921 (2011) - [j28]Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah:
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. PLoS Computational Biology 7(5) (2011) - [c47]Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp:
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes. RECOMB 2011: 104-105 - [e2]Vineet Bafna, Süleyman Cenk Sahinalp:
Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings. Lecture Notes in Computer Science 6577, Springer 2011, ISBN 978-3-642-20035-9 [contents] - [i1]Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp:
Mirroring co-evolving trees in the light of their topologies. CoRR abs/1110.5704 (2011) - 2010
- [j27]Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp:
Fast prediction of RNA-RNA interaction. Algorithms for Molecular Biology 5: 5 (2010) - [j26]Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp:
Sparsification of RNA structure prediction including pseudoknots. Algorithms for Molecular Biology 5: 39 (2010) - [j25]Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, Inanç Birol, Evan E. Eichler, Süleyman Cenk Sahinalp:
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinformatics 26(10): 1277-1283 (2010) - [j24]Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp:
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics [ISMB] 26(12): 350-357 (2010) - [j23]Nancy Y. Yu, James R. Wagner, Matthew R. Laird, Gabor Melli, Sébastien Rey, Raymond Lo, Phuong Dao, Süleyman Cenk Sahinalp, Martin Ester, Leonard J. Foster, Fiona S. L. Brinkman:
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 26(13): 1608-1615 (2010) - [j22]Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length. Journal of Computational Biology 17(1): 1-20 (2010) - [j21]Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp:
Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets. Journal of Computational Biology 17(5): 669-684 (2010) - [j20]Iurii Sushko, Sergii Novotarskyi, Robert Körner, Anil Kumar Pandey, Artem Cherkasov, Jiazhong Li, Paola Gramatica, Katja Hansen, Timon Schroeter, Klaus-Robert Müller, Lili Xi, Huanxiang Liu, Xiaojun Yao, Tomas Öberg, Farhad Hormozdiari, Phuong Dao, Süleyman Cenk Sahinalp, Roberto Todeschini, Pavel G. Polishchuk, Anatoly G. Artemenko, Victor Kuzmin, Todd Martin, Douglas M. Young, Denis Fourches, Eugene N. Muratov, Alexander Tropsha, Igor I. Baskin, Dragos Horvath, Gilles Marcou, Christophe Muller, Alexandre Varnek, Volodymyr V. Prokopenko, Igor V. Tetko:
Applicability Domains for Classification Problems: Benchmarking of Distance to Models for Ames Mutagenicity Set. Journal of Chemical Information and Modeling 50(12): 2094-2111 (2010) - [j19]Funda Ergün, S. Muthukrishnan, Süleyman Cenk Sahinalp:
Periodicity testing with sublinear samples and space. ACM Trans. Algorithms 6(2): 43:1-43:14 (2010) - [c46]Rolf Backofen, Hamidreza Chitsaz, Ivo L. Hofacker, Süleyman Cenk Sahinalp, Peter F. Stadler:
Session Introduction. Pacific Symposium on Biocomputing 2010: 54-56 - [c45]Can Alkan, Michael Brudno, Evan E. Eichler, Maricel G. Kann, Süleyman Cenk Sahinalp:
Session Introduction. Pacific Symposium on Biocomputing 2010: 302-304 - [c44]Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen:
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. RECOMB 2010: 473-490 - [c43]Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp:
Sparsification of RNA Structure Prediction Including Pseudoknots. WABI 2010: 40-51 - [c42]Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp:
Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. WABI 2010: 350-361
2000 – 2009
- 2009
- [j18]Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen:
A partition function algorithm for interacting nucleic acid strands. Bioinformatics 25(12) (2009) - [j17]Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov:
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study. Journal of Computational Biology 16(2): 159-167 (2009) - [c41]Recep Colak, Fereydoun Hormozdiari, Flavia Moser, Alexander Schönhuth, J. Holman, Martin Ester, Süleyman Cenk Sahinalp:
Dense Graphlet Statistics of Protein Interaction and Random Networks. Pacific Symposium on Biocomputing 2009: 178-189 - [c40]Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp:
Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes. RECOMB 2009: 218-219 - [c39]Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp:
biRNA: Fast RNA-RNA Binding Sites Prediction. WABI 2009: 25-36 - [c38]Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester:
Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks. WABI 2009: 37-48 - [c37]Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp:
Fast Prediction of RNA-RNA Interaction. WABI 2009: 261-272 - 2008
- [c36]Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp, Inanç Birol:
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. ISMB 2008: 32-40 - [c35]Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp:
Biomolecular network motif counting and discovery by color coding. ISMB 2008: 241-249 - [c34]Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
The Relation between Indel Length and Functional Divergence: A Formal Study. WABI 2008: 330-341 - [r1]
- 2007
- [j16]Martin Farach-Colton, Gad M. Landau, Süleyman Cenk Sahinalp, Dekel Tsur:
Optimal spaced seeds for faster approximate string matching. J. Comput. Syst. Sci. 73(7): 1035-1044 (2007) - [j15]Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp:
taveRNA: a web suite for RNA algorithms and applications. Nucleic Acids Research 35(Web-Server-Issue): 325-329 (2007) - [j14]Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp:
Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution. PLoS Computational Biology 3(7) (2007) - [j13]Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Süleyman Cenk Sahinalp, Evan E. Eichler:
Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data. PLoS Computational Biology 3(9) (2007) - [j12]Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp:
Novel approaches for small biomolecule classification and structural similarity search. SIGKDD Explorations 9(1): 14-21 (2007) - [c33]Emre Karakoç, Süleyman Cenk Sahinalp, Artem Cherkasov:
Comparative QSAR Analysis of Bacterial-, Fungalplant- and Human Metabolites. Pacific Symposium on Biocomputing 2007: 133-144 - 2006
- [j11]Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang:
RNA-RNA Interaction Prediction and Antisense RNA Target Search. Journal of Computational Biology 13(2): 267-282 (2006) - [j10]Emre Karakoç, Süleyman Cenk Sahinalp, Artem Cherkasov:
Comparative QSAR- and Fragments Distribution Analysis of Drugs, Druglikes, Metabolic Substances, and Antimicrobial Compounds. Journal of Chemical Information and Modeling 46(5): 2167-2182 (2006) - [j9]Süleyman Cenk Sahinalp, Ugur Dogrusöz, S. Muthukrishnan:
Preface. Theor. Comput. Sci. 368(3): 195 (2006) - [j8]Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp:
The degree distribution of the generalized duplication model. Theor. Comput. Sci. 369(1-3): 239-249 (2006) - [c32]Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp:
Distance based algorithms for small biomolecule classification and structural similarity search. ISMB (Supplement of Bioinformatics) 2006: 243-251 - [c31]Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp:
Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation. Systems Biology and Computational Proteomics 2006: 1-13 - [c30]Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler:
RNA Secondary Structure Prediction Via Energy Density Minimization. RECOMB 2006: 130-142 - [c29]Tugkan Batu, Funda Ergün, Süleyman Cenk Sahinalp:
Oblivious string embeddings and edit distance approximations. SODA 2006: 792-801 - 2005
- [j7]Can Alkan, Eray Tüzün, Jerome Buard, Franck Lethiec, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp:
Manipulating multiple sequence alignments via MaM and WebMaM. Nucleic Acids Research 33(Web-Server-Issue): 295-298 (2005) - [c28]Tugkan Batu, Süleyman Cenk Sahinalp:
Locally Consistent Parsing and Applications to Approximate String Comparisons. Developments in Language Theory 2005: 22-35 - [c27]Martin Farach-Colton, Gad M. Landau, Süleyman Cenk Sahinalp, Dekel Tsur:
Optimal Spaced Seeds for Faster Approximate String Matching. ICALP 2005: 1251-1262 - [c26]Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp:
Improved Duplication Models for Proteome Network Evolution. Systems Biology and Regulatory Genomics 2005: 119-137 - [c25]Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang:
RNA-RNA Interaction Prediction and Antisense RNA Target Search. RECOMB 2005: 152-171 - 2004
- [j6]Emre Karakoç, Z. Meral Özsoyoglu, Süleyman Cenk Sahinalp, Murat Tasan, Xiang Zhang:
Novel Approaches to Biomolecular Sequence Indexing. IEEE Data Eng. Bull. 27(3): 40-47 (2004) - [j5]Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün:
Identifying Uniformly Mutated Segments within Repeats. J. Bioinformatics and Computational Biology 2(4): 657-668 (2004) - [j4]Can Alkan, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp, Eray Tüzün:
The Role of Unequal Crossover in Alpha-Satellite DNA Evolution: A Computational Analysis. Journal of Computational Biology 11(5): 933-944 (2004) - [j3]S. Muthukrishnan, Süleyman Cenk Sahinalp:
An efficient algorithm for sequence comparison with block reversals. Theor. Comput. Sci. 321(1): 95-101 (2004) - [c24]Süleyman Cenk Sahinalp, Andrey Utis:
Hardness of String Similarity Search and Other Indexing Problems. ICALP 2004: 1080-1098 - [c23]Funda Ergün, S. Muthukrishnan, Süleyman Cenk Sahinalp:
Sublinear Methods for Detecting Periodic Trends in Data Streams. LATIN 2004: 16-28 - [e1]Süleyman Cenk Sahinalp, S. Muthukrishnan, Ugur Dogrusöz:
Combinatorial Pattern Matching, 15th Annual Symposium, CPM 2004, Istanbul,Turkey, July 5-7, 2004, Proceedings. Lecture Notes in Computer Science 3109, Springer 2004, ISBN 3-540-22341-X [contents] - 2003
- [c22]Funda Ergün, S. Muthukrishnan, Süleyman Cenk Sahinalp:
Comparing Sequences with Segment Rearrangements. FSTTCS 2003: 183-194 - [c21]Süleyman Cenk Sahinalp, Murat Tasan, Jai Macker, Z. Meral Özsoyoglu:
Distance Based Indexing for String Proximity Search. ICDE 2003: 125-136 - 2002
- [c20]Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün:
Statistical Identification of Uniformly Mutated Segments within Repeats. CPM 2002: 249-261 - [c19]S. Muthukrishnan, Süleyman Cenk Sahinalp:
Simple and Practical Sequence Nearest Neighbors with Block Operations. CPM 2002: 262-278 - [c18]S. Muthukrishnan, Süleyman Cenk Sahinalp:
An Improved Algorithm for Sequence Comparison with Block Reversals. LATIN 2002: 319-325 - 2001
- [j2]Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk:
The Complexity of Gene Placement. J. Algorithms 41(2): 225-243 (2001) - [j1]Yossi Matias, Nasir M. Rajpoot, Süleyman Cenk Sahinalp:
The Effect of Flexible Parsing for Dynamic Dictionary-Based Data Compression. ACM Journal of Experimental Algorithmics 6: 10 (2001) - [c17]Funda Ergün, Süleyman Cenk Sahinalp, Jonathan Sharp, Rakesh K. Sinha:
Biased Skip Lists for Highly Skewed Access Patterns. ALENEX 2001: 216-230 - [c16]Graham Cormode, S. Muthukrishnan, Süleyman Cenk Sahinalp:
Permutation Editing and Matching via Embeddings. ICALP 2001: 481-492 - [c15]Funda Ergün, Suvo Mittra, Süleyman Cenk Sahinalp, Jonathan Sharp, Rakesh K. Sinha:
A Dynamic Lookup Scheme for Bursty Access Patterns. INFOCOM 2001: 1444-1453 - [c14]Funda Ergün, Süleyman Cenk Sahinalp, Jonathan Sharp, Rakesh K. Sinha:
Biased dictionaries with fast insert/deletes. STOC 2001: 483-491 - 2000
- [c13]Z. Cohen, Yossi Matias, S. Muthukrishnan, Süleyman Cenk Sahinalp, Jacob Ziv:
On the temporal HZY compression scheme. SODA 2000: 185-186 - [c12]Graham Cormode, Mike Paterson, Süleyman Cenk Sahinalp, Uzi Vishkin:
Communication complexity of document exchange. SODA 2000: 197-206 - [c11]S. Muthukrishnan, Süleyman Cenk Sahinalp:
Approximate nearest neighbors and sequence comparison with block operations. STOC 2000: 416-424
1990 – 1999
- 1999
- [c10]Yossi Matias, Nasir M. Rajpoot, Süleyman Cenk Sahinalp:
The Effect of Flexible Parsing for Dynamic Dictionary Based Data Compression. Data Compression Conference 1999: 238-246 - [c9]Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk:
The Complexity of Gene Placement. SODA 1999: 386-395 - [c8]Yossi Matias, Süleyman Cenk Sahinalp:
On the Optimality of Parsing in Dynamic Dictionary Based Data Compression. SODA 1999: 943-944 - [c7]S. Muthukrishnan, Mike Paterson, Süleyman Cenk Sahinalp, Torsten Suel:
Compact Grid Layouts of Multi-Level Networks. STOC 1999: 455-463 - 1998
- [c6]Yossi Matias, S. Muthukrishnan, Süleyman Cenk Sahinalp, Jacob Ziv:
Augmenting Suffix Trees, with Applications. ESA 1998: 67-78 - [c5]Shimon Even, S. Muthukrishnan, Mike Paterson, Süleyman Cenk Sahinalp:
Layout of the Batcher Bitonic Sorter (Extended Abstract). SPAA 1998: 172-181 - [c4]Yossi Matias, Nasir M. Rajpoot, Süleyman Cenk Sahinalp:
Implementation and Experimental Evaluation of Flexible Parsing for Dynamic Dictionary Based Data Compression. Algorithm Engineering 1998: 49-61 - 1996
- [c3]Süleyman Cenk Sahinalp, Uzi Vishkin:
Efficient Approximate and Dynamic Matching of Patterns Using a Labeling Paradigm (extended abstract). FOCS 1996: 320-328 - 1994
- [c2]Süleyman Cenk Sahinalp, Uzi Vishkin:
On a Parallel-Algorithms Method for String Matching Problems. CIAC 1994: 22-32 - [c1]Süleyman Cenk Sahinalp, Uzi Vishkin:
Symmetry breaking for suffix tree construction. STOC 1994: 300-309
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