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Douglas Thain
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Publications
- 2018
- [j30]Nicholas L. Hazekamp, Nathaniel Kremer-Herman, Benjamín Tovar, Haiyan Meng, Olivia Choudhury, Scott J. Emrich, Douglas Thain:
Combining Static and Dynamic Storage Management for Data Intensive Scientific Workflows. IEEE Trans. Parallel Distributed Syst. 29(2): 338-350 (2018) - 2015
- [j22]Olivia Choudhury, Nicholas L. Hazekamp, Douglas Thain, Scott J. Emrich:
Accelerating Comparative Genomics Work ows in a Distributed Environment with Optimized Data Partitioning and Workflow Fusion. Scalable Comput. Pract. Exp. 16(1) (2015) - [c71]Olivia Choudhury, Dinesh Rajan, Nicholas L. Hazekamp, Sandra Gesing, Douglas Thain, Scott J. Emrich:
Balancing Thread-Level and Task-Level Parallelism for Data-Intensive Workloads on Clusters and Clouds. CLUSTER 2015: 390-393 - [c69]Nicholas L. Hazekamp, Joseph Sarro, Olivia Choudhury, Sandra Gesing, Scott J. Emrich, Douglas Thain:
Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow. e-Science 2015: 332-341 - 2014
- [j21]Irena Lanc, Peter Bui, Douglas Thain, Scott J. Emrich:
Adapting bioinformatics applications for heterogeneous systems: a case study. Concurr. Comput. Pract. Exp. 26(4): 866-877 (2014) - [j20]Andrew Thrasher, Zachary Musgrave, Brian Kachmarck, Douglas Thain, Scott J. Emrich:
Scaling up genome annotation using MAKER and work queue. Int. J. Bioinform. Res. Appl. 10(4/5): 447-460 (2014) - [c62]Nicholas L. Hazekamp, Olivia Choudhury, Sandra Gesing, Scott J. Emrich, Douglas Thain:
Expanding Tasks of Logical Workflows Into Independent Workflows for Improved Scalability. CCGRID 2014: 548-549 - [c61]Olivia Choudhury, Nicholas L. Hazekamp, Douglas Thain, Scott J. Emrich:
Accelerating Comparative Genomics Workflows in a Distributed Environment with Optimized Data Partitioning. CCGRID 2014: 711-719 - 2013
- [c60]Dinesh Rajan, Andrew Thrasher, Badi Abdul-Wahid, Jesús A. Izaguirre, Scott J. Emrich, Douglas Thain:
Case Studies in Designing Elastic Applications. CCGRID 2013: 466-473 - 2012
- [j16]Christopher Moretti, Andrew Thrasher, Li Yu, Michael Olson, Scott J. Emrich, Douglas Thain:
A Framework for Scalable Genome Assembly on Clusters, Clouds, and Grids. IEEE Trans. Parallel Distributed Syst. 23(12): 2189-2197 (2012) - [c51]Andrew Thrasher, Douglas Thain, Scott J. Emrich, Zachary Musgrave:
Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue. ICCABS 2012: 1-6 - 2011
- [j15]Rory Carmichael, Patrick Braga-Henebry, Douglas Thain, Scott J. Emrich:
Biocompute 2.0: an improved collaborative workspace for data intensive bio-science. Concurr. Comput. Pract. Exp. 23(17): 2305-2314 (2011) - 2010
- [j14]Li Yu, Christopher Moretti, Andrew Thrasher, Scott J. Emrich, Kenneth Judd, Douglas Thain:
Harnessing parallelism in multicore clusters with the All-Pairs, Wavefront, and Makeflow abstractions. Clust. Comput. 13(3): 243-256 (2010) - [c43]Rory Carmichael, Patrick Braga-Henebry, Douglas Thain, Scott J. Emrich:
Biocompute: towards a collaborative workspace for data intensive bio-science. HPDC 2010: 489-498 - 2009
- [c37]Li Yi, Christopher Moretti, Scott J. Emrich, Kenneth Judd, Douglas Thain:
Harnessing parallelism in multicore clusters with the all-pairs and wavefront abstractions. HPDC 2009: 1-10 - [c35]Christopher Moretti, Michael Olson, Scott J. Emrich, Douglas Thain:
Highly scalable genome assembly on campus grids. SC-MTAGS 2009
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