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ORCIDMathieu Raffinot
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- affiliation: Pierre and Marie Curie University, Paris, France
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Books and Theses
- 2002
[b1]Gonzalo Navarro, Mathieu Raffinot:
Flexible pattern matching in strings - practical on-line search algorithms for texts and biological sequences. Cambridge University Press 2002, ISBN 978-0-521-81307-5, pp. I-X, 1-221
Journal Articles
- 2020
- [j21]Geoffrey Solano
, Guillaume Blin, Mathieu Raffinot, Jhoirene B. Clemente, Jaime Caro:
On the Approximability of the Minimum Weight $t$-partite Clique Problem. J. Graph Algorithms Appl. 24(3): 171-190 (2020) - 2016
- [j20]Djamal Belazzougui, Roman Kolpakov, Mathieu Raffinot:
Indexing and querying color sets of images. Theor. Comput. Sci. 647: 74-84 (2016) - 2014
- [j19]Aïda Ouangraoua, Mathieu Raffinot:
On the Identification of Conflicting Contiguities in Ancestral Genome Reconstruction. J. Comput. Biol. 21(1): 64-79 (2014) - [j18]Fabien de Montgolfier, Mathieu Raffinot, Irena Rusu:
Easy Identification of Generalized Common and Conserved Nested Intervals. J. Comput. Biol. 21(7): 520-533 (2014) - 2013
- [j17]Djamal Belazzougui, Mathieu Raffinot:
Approximate regular expression matching with multi-strings. J. Discrete Algorithms 18: 14-21 (2013) - [j16]Djamal Belazzougui, Roman Kolpakov, Mathieu Raffinot:
Various improvements to text fingerprinting. J. Discrete Algorithms 22: 1-18 (2013) - 2012
- [j15]Pierre Charbit, Fabien de Montgolfier, Mathieu Raffinot:
Linear Time Split Decomposition Revisited. SIAM J. Discret. Math. 26(2): 499-514 (2012) - 2008
- [j14]Pierre Charbit, Michel Habib, Vincent Limouzy, Fabien de Montgolfier, Mathieu Raffinot, Michaël Rao:
A note on computing set overlap classes. Inf. Process. Lett. 108(4): 186-191 (2008) - [j13]Roman Kolpakov, Mathieu Raffinot:
New algorithms for text fingerprinting. J. Discrete Algorithms 6(2): 243-255 (2008) - [j12]Anne Bergeron, Cédric Chauve, Fabien de Montgolfier, Mathieu Raffinot:
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs. SIAM J. Discret. Math. 22(3): 1022-1039 (2008) - 2006
- [j11]Fabien Coulon, Mathieu Raffinot:
Fast algorithms for identifying maximal common connected sets of interval graphs. Discret. Appl. Math. 154(12): 1709-1721 (2006) - 2005
- [j10]Gonzalo Navarro, Mathieu Raffinot:
New Techniques for Regular Expression Searching. Algorithmica 41(2): 89-116 (2005) - [j9]Nadia El-Mabrouk, Mathieu Raffinot, Jean-Eudes Duchesne, Mathieu Lajoie, Nicolas Luc:
Approximate Matching of Structured Motifs in Dna Sequences. J. Bioinform. Comput. Biol. 3(2): 317-342 (2005) - 2004
- [j8]Gonzalo Navarro, Mathieu Raffinot:
Practical and flexible pattern matching over Ziv-Lempel compressed text. J. Discrete Algorithms 2(3): 347-371 (2004) - [j7]Marie-Pierre Béal, Anne Bergeron, Sylvie Corteel, Mathieu Raffinot:
An algorithmic view of gene teams. Theor. Comput. Sci. 320(2-3): 395-418 (2004) - 2003
- [j6]Nicolas Luc, Jean-Loup Risler, Anne Bergeron, Mathieu Raffinot:
Gene teams: a new formalization of gene clusters for comparative genomics. Comput. Biol. Chem. 27(1): 59-67 (2003) - [j5]Gonzalo Navarro, Mathieu Raffinot:
Fast and Simple Character Classes and Bounded Gaps Pattern Matching, with Applications to Protein Searching. J. Comput. Biol. 10(6): 903-923 (2003) - 2001
- [j4]Mathieu Raffinot:
On maximal repeats in strings. Inf. Process. Lett. 80(3): 165-169 (2001) - 2000
- [j3]Cyril Allauzen, Mathieu Raffinot:
Simple Optimal String Matching Algorithm. J. Algorithms 36(1): 102-116 (2000) - [j2]Gonzalo Navarro, Mathieu Raffinot:
Fast and Flexible String Matching by Combining Bit-Parallelism and Suffix Automata. ACM J. Exp. Algorithmics 5: 4 (2000) - 1999
- [j1]Mathieu Raffinot:
Asymptotic Estimation of the Average Number of Terminal States in DAWGs. Discret. Appl. Math. 92(2-3): 193-203 (1999)
Conference and Workshop Papers
- 2023
- [c25]Guillaume Blin, Alexandru Popa, Mathieu Raffinot, Raluca Uricaru:
Approximation and Fixed Parameter Algorithms for the Approximate Cover Problem. SPIRE 2023: 75-88 - 2020
- [c24]Arnaud Casteigts, Mathieu Raffinot, Jason Schoeters:
VectorTSP: A Traveling Salesperson Problem with Racetrack-Like Acceleration Constraints. ALGOSENSORS 2020: 45-59 - 2017
- [c23]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Flexible Indexing of Repetitive Collections. CiE 2017: 162-174 - [c22]Tristan Braquelaire, Marie Gasparoux, Mathieu Raffinot, Raluca Uricaru:
On the Shortest Common Superstring of NGS Reads. TAMC 2017: 97-111 - 2015
- [c21]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Composite Repetition-Aware Data Structures. CPM 2015: 26-39 - 2013
- [c20]Djamal Belazzougui, Mathieu Raffinot:
Average Optimal String Matching in Packed Strings. CIAC 2013: 37-48 - [c19]Djamal Belazzougui, Adeline Pierrot, Mathieu Raffinot, Stéphane Vialette:
Single and Multiple Consecutive Permutation Motif Search. ISAAC 2013: 66-77 - 2012
- [c18]Aïda Ouangraoua, Mathieu Raffinot:
Faster and Simpler Minimal Conflicting Set Identification - (Extended Abstract). CPM 2012: 41-55 - 2011
- [c17]Mathieu Raffinot:
Consecutive Ones Property Testing: Cut or Swap. CiE 2011: 239-249 - [c16]Djamal Belazzougui, Mathieu Raffinot:
Approximate Regular Expression Matching with Multi-strings. SPIRE 2011: 55-66 - 2008
- [c15]Roman Kolpakov, Mathieu Raffinot:
Faster Text Fingerprinting. SPIRE 2008: 15-26 - 2006
- [c14]Roman Kolpakov, Mathieu Raffinot:
New Algorithms for Text Fingerprinting. CPM 2006: 342-353 - 2005
- [c13]Anne Bergeron, Cédric Chauve, Fabien de Montgolfier, Mathieu Raffinot:
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs. ESA 2005: 779-790 - 2004
- [c12]Michel Habib, Christophe Paul, Mathieu Raffinot:
Maximal Common Connected Sets of Interval Graphs. CPM 2004: 359-372 - 2002
- [c11]Lorie Dudoignon, Eric Glémet, Hendrik Cornelis Heus, Mathieu Raffinot:
High Similarity Sequence Comparison in Clustering Large Sequence Databases. CSB 2002: 228-236 - [c10]Nadia El-Mabrouk, Mathieu Raffinot:
Approximate matching of secondary structures. RECOMB 2002: 156-164 - [c9]Anne Bergeron, Sylvie Corteel, Mathieu Raffinot:
The Algorithmic of Gene Teams. WABI 2002: 464-476 - 2001
- [c8]Cyril Allauzen, Maxime Crochemore, Mathieu Raffinot:
Efficient Experimental String Matching by Weak Factor Recognition. CPM 2001: 51-72 - [c7]Gonzalo Navarro, Mathieu Raffinot:
Fast and simple character classes and bounded gaps pattern matching, with application to protein searching. RECOMB 2001: 231-240 - [c6]Gonzalo Navarro, Mathieu Raffinot:
Compact DFA Representation for Fast Regular Expression Search. WAE 2001: 1-12 - 2000
- [c5]Cyril Allauzen, Mathieu Raffinot:
Simple Optimal String Matching Algorithm. CPM 2000: 364-374 - 1999
- [c4]Gonzalo Navarro, Mathieu Raffinot:
A General Practical Approach to Pattern Matching over Ziv-Lempel Compressed Text. CPM 1999: 14-36 - [c3]Cyril Allauzen, Maxime Crochemore, Mathieu Raffinot:
Factor Oracle: A New Structure for Pattern Matching. SOFSEM 1999: 295-310 - [c2]Gonzalo Navarro, Mathieu Raffinot:
Fast Regular Expression Search. WAE 1999: 198-212 - 1998
- [c1]Gonzalo Navarro, Mathieu Raffinot:
A Bit-Parallel Approach to Suffix Automata: Fast Extended String Matching. CPM 1998: 14-33
Informal and Other Publications
- 2020
- [i14]Arnaud Casteigts, Mathieu Raffinot, Jason Schoeters:
VectorTSP: A Traveling Salesperson Problem with Racetrack-like acceleration constraints. CoRR abs/2006.03666 (2020) - 2018
- [i13]Tristan Braquelaire, Marie Gasparoux, Mathieu Raffinot, Raluca Uricaru:
On improving the approximation ratio of the r-shortest common superstring problem. CoRR abs/1805.00060 (2018) - 2017
- [i12]Mathieu Raffinot, Romain Rivière:
Optimizing Google Shopping Campaigns Structures With Query-Level Matching. CoRR abs/1708.04586 (2017) - 2016
- [i11]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Practical combinations of repetition-aware data structures. CoRR abs/1604.06002 (2016) - [i10]Tristan Braquelaire, Marie Gasparoux, Mathieu Raffinot, Raluca Uricaru:
A note on the shortest common superstring of NGS reads. CoRR abs/1605.05542 (2016) - [i9]Djamal Belazzougui, Roman Kolpakov, Mathieu Raffinot:
Indexing and querying color sets of images. CoRR abs/1608.07847 (2016) - 2015
- [i8]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Composite repetition-aware data structures. CoRR abs/1502.05937 (2015) - 2013
- [i7]Djamal Belazzougui, Roman Kolpakov, Mathieu Raffinot:
Various improvements to text fingerprinting. CoRR abs/1301.3488 (2013) - [i6]Djamal Belazzougui, Adeline Pierrot, Mathieu Raffinot, Stéphane Vialette:
Single and multiple consecutive permutation motif search. CoRR abs/1301.4952 (2013) - [i5]Fabien de Montgolfier, Mathieu Raffinot, Irena Rusu:
Easy identification of generalized common nested intervals. CoRR abs/1305.4747 (2013) - 2012
- [i4]Aïda Ouangraoua, Mathieu Raffinot:
Faster and Simpler Minimal Conflicting Set Identification. CoRR abs/1201.5513 (2012) - 2010
- [i3]Mathieu Raffinot:
Consecutive ones property testing: cut or swap. CoRR abs/1008.3786 (2010) - 2009
- [i2]Pierre Charbit, Fabien de Montgolfier, Mathieu Raffinot:
A Simple Linear Time Split Decomposition Algorithm of Undirected Graphs. CoRR abs/0902.1700 (2009) - 2007
- [i1]Pierre Charbit, Michel Habib, Vincent Limouzy, Fabien de Montgolfier, Mathieu Raffinot, Michaël Rao:
A Note On Computing Set Overlap Classes. CoRR abs/0711.4573 (2007)
Coauthor Index
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