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2020 – today
- 2025
[i11]Yizhen Luo, Jiashuo Wang, Siqi Fan, Zaiqing Nie:
PharMolixFM: All-Atom Foundation Models for Molecular Modeling and Generation. CoRR abs/2503.21788 (2025)- [i10]Suyuan Zhao, Yizhen Luo, Ganbo Yang, Yan Zhong, Hao Zhou, Zaiqing Nie:
SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics. CoRR abs/2507.11588 (2025) - 2024
- [c5]Suyuan Zhao, Jiahuan Zhang, Yushuai Wu, Yizhen Luo, Zaiqing Nie:
LangCell: Language-Cell Pre-training for Cell Identity Understanding. ICML 2024 - [c4]Yizhen Luo
, Kai Yang, Massimo Hong, Xing Yi Liu, Zikun Nie, Hao Zhou, Zaiqing Nie:
Learning Multi-view Molecular Representations with Structured and Unstructured Knowledge. KDD 2024: 2082-2093 - [c3]Yizhen Luo, Zikun Nie, Massimo Hong, Suyuan Zhao, Hao Zhou, Zaiqing Nie:
MutaPLM: Protein Language Modeling for Mutation Explanation and Engineering. NeurIPS 2024 - [i9]Yushuai Wu, Ting Zhang, Hao Zhou, Hainan Wu, Hanwen Sunchu, Lei Hu, Xiaofang Chen, Suyuan Zhao, Gaochao Liu, Chao Sun, Jiahuan Zhang, Yizhen Luo, Peng Liu, Zaiqing Nie:
DeepCRE: Transforming Drug R&D via AI-Driven Cross-drug Response Evaluation. CoRR abs/2403.03768 (2024) - [i8]Suyuan Zhao, Jiahuan Zhang, Yizhen Luo, Yushuai Wu, Zaiqing Nie:
LangCell: Language-Cell Pre-training for Cell Identity Understanding. CoRR abs/2405.06708 (2024) - [i7]Yizhen Luo, Kai Yang, Massimo Hong, Xing Yi Liu, Zikun Nie, Hao Zhou, Zaiqing Nie:
Learning Multi-view Molecular Representations with Structured and Unstructured Knowledge. CoRR abs/2406.09841 (2024) - [i6]Yizhen Luo, Zikun Nie, Massimo Hong, Suyuan Zhao, Hao Zhou, Zaiqing Nie:
MutaPLM: Protein Language Modeling for Mutation Explanation and Engineering. CoRR abs/2410.22949 (2024) - 2023
- [c2]Yukuo Cen, Zhenyu Hou, Yan Wang, Qibin Chen, Yizhen Luo, Zhongming Yu, Hengrui Zhang, Xingcheng Yao, Aohan Zeng, Shiguang Guo, Yuxiao Dong, Yang Yang, Peng Zhang, Guohao Dai, Yu Wang, Chang Zhou, Hongxia Yang, Jie Tang:
CogDL: A Comprehensive Library for Graph Deep Learning. WWW 2023: 747-758 - [i5]Yizhen Luo, Kui Huang, Massimo Hong, Kai Yang, Jiahuan Zhang, Yushuai Wu, Zaiqing Nie:
Empowering AI drug discovery with explicit and implicit knowledge. CoRR abs/2305.01523 (2023) - [i4]Yizhen Luo, Kai Yang, Massimo Hong, Xing Yi Liu, Zaiqing Nie:
MolFM: A Multimodal Molecular Foundation Model. CoRR abs/2307.09484 (2023) - [i3]Yizhen Luo, Jiahuan Zhang, Siqi Fan, Kai Yang, Yushuai Wu, Mu Qiao, Zaiqing Nie:
BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine. CoRR abs/2308.09442 (2023) - 2022
- [c1]Haibao Yu, Yizhen Luo, Mao Shu, Yiyi Huo, Zebang Yang, Yifeng Shi, Zhenglong Guo, Hanyu Li, Xing Hu, Jirui Yuan, Zaiqing Nie:
DAIR-V2X: A Large-Scale Dataset for Vehicle-Infrastructure Cooperative 3D Object Detection. CVPR 2022: 21329-21338 - [i2]Haibao Yu, Yizhen Luo, Mao Shu, Yiyi Huo, Zebang Yang, Yifeng Shi, Zhenglong Guo, Hanyu Li, Xing Hu, Jirui Yuan, Zaiqing Nie:
DAIR-V2X: A Large-Scale Dataset for Vehicle-Infrastructure Cooperative 3D Object Detection. CoRR abs/2204.05575 (2022) - 2021
- [i1]Yukuo Cen, Zhenyu Hou, Yan Wang, Qibin Chen, Yizhen Luo, Xingcheng Yao, Aohan Zeng, Shiguang Guo, Peng Zhang, Guohao Dai, Yu Wang, Chang Zhou, Hongxia Yang, Jie Tang:
CogDL: An Extensive Toolkit for Deep Learning on Graphs. CoRR abs/2103.00959 (2021)
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