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- Gianluca Della Vedova
University of Milano-Bicocca, Milan, Italy
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Publication search results
found 97 matches
- 2023
- Simone Ciccolella, Gianluca Della Vedova, Vladimir Filipovic, Mauricio Soto Gomez:
Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison. Algorithms 16(7): 333 (2023) - Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson:
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. J. Comput. Biol. 30(4): 469-491 (2023) - Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi, Mattia Sgrò:
Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via PBWT. IWBBIO (1) 2023: 62-76 - Gianluca Della Vedova, Besik Dundua, Steffen Lempp, Florin Manea:
Unity of Logic and Computation - 19th Conference on Computability in Europe, CiE 2023, Batumi, Georgia, July 24-28, 2023, Proceedings. Lecture Notes in Computer Science 13967, Springer 2023, ISBN 978-3-031-36977-3 [contents] - 2022
- Jasmijn A. Baaijens, Paola Bonizzoni, Christina Boucher, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi, Jouni Sirén:
Computational graph pangenomics: a tutorial on data structures and their applications. Nat. Comput. 21(1): 81-108 (2022) - Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson:
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. CoRR abs/2211.08267 (2022) - 2021
- Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova:
Triplet-based similarity score for fully multilabeled trees with poly-occurring labels. Bioinform. 37(2): 178-184 (2021) - Simone Ciccolella, Camir Ricketts, Mauricio Soto Gomez, Murray Patterson, Dana Silverbush, Paola Bonizzoni, Iman Hajirasouliha, Gianluca Della Vedova:
Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses. Bioinform. 37(3): 326-333 (2021) - Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova, Raffaella Rizzi, Paola Bonizzoni:
Shark: fishing relevant reads in an RNA-Seq sample. Bioinform. 37(4): 464-472 (2021) - Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali:
MALVIRUS: an integrated application for viral variant analysis. BMC Bioinform. 22-S(15): 625 (2021) - Sarwan Ali, Simone Ciccolella, Lorenzo Lucarella, Gianluca Della Vedova, Murray Patterson:
Simpler and Faster Development of Tumor Phylogeny Pipelines. J. Comput. Biol. 28(11): 1142-1155 (2021) - Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi:
Computing the multi-string BWT and LCP array in external memory. Theor. Comput. Sci. 862: 42-58 (2021) - Simone Ciccolella, Murray Patterson, Paola Bonizzoni, Gianluca Della Vedova:
Effective Clustering for Single Cell Sequencing Cancer Data. IEEE J. Biomed. Health Informatics 25(11): 4068-4078 (2021) - Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson:
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data. ICCABS 2021: 133-148 - 2020
- Simone Ciccolella, Mauricio Soto Gomez, Murray D. Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni:
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. BMC Bioinform. 21-S(1): 413 (2020) - Marcella Anselmo, Gianluca Della Vedova, Florin Manea, Arno Pauly:
Beyond the Horizon of Computability - 16th Conference on Computability in Europe, CiE 2020, Fisciano, Italy, June 29 - July 3, 2020, Proceedings. Lecture Notes in Computer Science 12098, Springer 2020, ISBN 978-3-030-51465-5 [contents] - 2019
- Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi:
Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array. J. Comput. Biol. 26(9): 948-961 (2019) - Raffaella Rizzi, Stefano Beretta, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni:
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era. Quant. Biol. 7(4): 278-292 (2019) - Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez:
Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1410-1423 (2019) - Simone Ciccolella, Murray D. Patterson, Paola Bonizzoni, Gianluca Della Vedova:
Effective Clustering for Single Cell Sequencing Cancer Data. BCB 2019: 437-446 - Giulia Bernardini, Paola Bonizzoni, Gianluca Della Vedova, Murray Patterson:
A Rearrangement Distance for Fully-Labelled Trees. CPM 2019: 28:1-28:15 - Giulia Bernardini, Paola Bonizzoni, Gianluca Della Vedova, Murray Patterson:
A rearrangement distance for fully-labelled trees. CoRR abs/1904.01321 (2019) - 2018
- Stefano Beretta, Murray Patterson, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni:
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads. BMC Bioinform. 19(1): 252:1-252:19 (2018) - Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni:
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events. BMC Bioinform. 19(1): 444:1-444:21 (2018) - Paola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Yuri Pirola, Marco Previtali, Raffaella Rizzi:
Divide and Conquer Computation of the Multi-string BWT and LCP Array. CiE 2018: 107-117 - Simone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni:
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. ICCABS 2018: 1 - 2017
- Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi:
An External-Memory Algorithm for String Graph Construction. Algorithmica 78(2): 394-424 (2017) - Paola Bonizzoni, Anna Paola Carrieri, Gianluca Della Vedova, Raffaella Rizzi, Gabriella Trucco:
Species-Driven Persistent Phylogeny. Fundam. Informaticae 154(1-4): 47-63 (2017) - Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi:
FSG: Fast String Graph Construction for De Novo Assembly. J. Comput. Biol. 24(10): 953-968 (2017) - Paola Bonizzoni, Anna Paola Carrieri, Gianluca Della Vedova, Raffaella Rizzi, Gabriella Trucco:
A colored graph approach to perfect phylogeny with persistent characters. Theor. Comput. Sci. 658: 60-73 (2017)
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