:facetid:toc:\"db/conf/wabi/wabi2009.bht\"OK:facetid:toc:db/conf/wabi/wabi2009.bhtSebastian BöckerFlorian RascheTamara SteijgerAnnotating Fragmentation Patterns.WABI13-242009Conference and Workshop Papersclosedconf/wabi/BockerRS0910.1007/978-3-642-04241-6_2https://doi.org/10.1007/978-3-642-04241-6_2https://dblp.org/rec/conf/wabi/BockerRS09URL#5211787Paola BonizzoniGianluca Della VedovaRiccardo DondiYuri PirolaRaffaella RizziMinimum Factorization Agreement of Spliced ESTs.WABI1-122009Conference and Workshop Papersclosedconf/wabi/BonizzoniVDPR0910.1007/978-3-642-04241-6_1https://doi.org/10.1007/978-3-642-04241-6_1https://dblp.org/rec/conf/wabi/BonizzoniVDPR09URL#5211788Hamidreza ChitsazRolf BackofenSüleyman Cenk SahinalpbiRNA: Fast RNA-RNA Binding Sites Prediction.WABI25-362009Conference and Workshop Papersclosedconf/wabi/ChitsazBS0910.1007/978-3-642-04241-6_3https://doi.org/10.1007/978-3-642-04241-6_3https://dblp.org/rec/conf/wabi/ChitsazBS09URL#5211789Phuong DaoAlexander SchönhuthFereydoun HormozdiariIman HajirasoulihaSüleyman Cenk SahinalpMartin EsterQuantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks.WABI37-482009Conference and Workshop Papersclosedconf/wabi/DaoSHHSE0910.1007/978-3-642-04241-6_4https://doi.org/10.1007/978-3-642-04241-6_4https://dblp.org/rec/conf/wabi/DaoSHHSE09URL#5211790Daniel DeBlasioJocelyne BruandShaojie ZhangPMFastR: A New Approach to Multiple RNA Structure Alignment.WABI49-612009Conference and Workshop Papersclosedconf/wabi/DeBlasioBZ0910.1007/978-3-642-04241-6_5https://doi.org/10.1007/978-3-642-04241-6_5https://dblp.org/rec/conf/wabi/DeBlasioBZ09URL#5211791Jianrong DongDavid Fernández-BacaFred R. McMorrisConstructing Majority-Rule Supertrees.WABI73-842009Conference and Workshop Papersclosedconf/wabi/DongFM0910.1007/978-3-642-04241-6_7https://doi.org/10.1007/978-3-642-04241-6_7https://dblp.org/rec/conf/wabi/DongFM09URL#5211792Pedro FeijãoJoão MeidanisSCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy.WABI85-962009Conference and Workshop Papersclosedconf/wabi/FeijaoM0910.1007/978-3-642-04241-6_8https://doi.org/10.1007/978-3-642-04241-6_8https://dblp.org/rec/conf/wabi/FeijaoM09URL#5211793Yelena FridDan GusfieldA Simple, Practical and Complete O(\fracn3 logn)O(\frac{n3}{ \log n})-Time Algorithm for RNA Folding Using the Four-Russians Speedup.WABI97-1072009Conference and Workshop Papersclosedconf/wabi/FridG0910.1007/978-3-642-04241-6_9https://doi.org/10.1007/978-3-642-04241-6_9https://dblp.org/rec/conf/wabi/FridG09URL#5211794Marta GîrdeaLaurent NoéGregory KucherovBack-Translation for Discovering Distant Protein Homologies.WABI108-1202009Conference and Workshop Papersclosedconf/wabi/GirdeaNK0910.1007/978-3-642-04241-6_10https://doi.org/10.1007/978-3-642-04241-6_10https://dblp.org/rec/conf/wabi/GirdeaNK09URL#5211795Roberto GrossiAndrea PietracaprinaNadia PisantiGeppino PucciEli UpfalFabio VandinMADMX: A Novel Strategy for Maximal Dense Motif Extraction.WABI362-3742009Conference and Workshop Papersclosedconf/wabi/GrossiPPPUV0910.1007/978-3-642-04241-6_30https://doi.org/10.1007/978-3-642-04241-6_30https://dblp.org/rec/conf/wabi/GrossiPPPUV09URL#5211796Timothy HancockHiroshi MamitsukaA Markov Classification Model for Metabolic Pathways.WABI121-1322009Conference and Workshop Papersclosedconf/wabi/HancockM0910.1007/978-3-642-04241-6_11https://doi.org/10.1007/978-3-642-04241-6_11https://dblp.org/rec/conf/wabi/HancockM09URL#5211797Matthew HansenLogan EverettLarry N. SinghSridhar HannenhalliMimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction.WABI133-1442009Conference and Workshop Papersclosedconf/wabi/HansenESH0910.1007/978-3-642-04241-6_12https://doi.org/10.1007/978-3-642-04241-6_12https://dblp.org/rec/conf/wabi/HansenESH09URL#5211798Peter Husemann 0002Jens StoyePhylogenetic Comparative Assembly.WABI145-1562009Conference and Workshop Papersclosedconf/wabi/HusemannS0910.1007/978-3-642-04241-6_13https://doi.org/10.1007/978-3-642-04241-6_13https://dblp.org/rec/conf/wabi/HusemannS09URL#5211799Minghui Jiang 0001Pedro J. TejadaRamoni O. LasisiShanhong ChengD. Scott FechserK-Partite RNA Secondary Structures.WABI157-1682009Conference and Workshop Papersclosedconf/wabi/JiangTLCF0910.1007/978-3-642-04241-6_14https://doi.org/10.1007/978-3-642-04241-6_14https://dblp.org/rec/conf/wabi/JiangTLCF09URL#5211800Crystal L. KahnShay MozesBenjamin J. RaphaelEfficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in Genomes.WABI169-1802009Conference and Workshop Papersclosedconf/wabi/KahnMR0910.1007/978-3-642-04241-6_15https://doi.org/10.1007/978-3-642-04241-6_15https://dblp.org/rec/conf/wabi/KahnMR09URL#5211801Jakub KovácTomás VinarBrona BrejováPredicting Gene Structures from Multiple RT-PCR Tests.WABI181-1932009Conference and Workshop Papersclosedconf/wabi/KovacVB0910.1007/978-3-642-04241-6_16https://doi.org/10.1007/978-3-642-04241-6_16https://dblp.org/rec/conf/wabi/KovacVB09URL#5211802Thomas Greve KristensenJesper Buus NielsenChristian N. S. PedersenA Tree Based Method for the Rapid Screening of Chemical Fingerprints.WABI194-2052009Conference and Workshop Papersclosedconf/wabi/KristensenNP0910.1007/978-3-642-04241-6_17https://doi.org/10.1007/978-3-642-04241-6_17https://dblp.org/rec/conf/wabi/KristensenNP09URL#5211803Fumei LamDan GusfieldSrinath Sridhar 0001Generalizing the Four Gamete Condition and Splits Equivalence Theorem: Perfect Phylogeny on Three State Characters.WABI206-2192009Conference and Workshop Papersclosedconf/wabi/LamGS0910.1007/978-3-642-04241-6_18https://doi.org/10.1007/978-3-642-04241-6_18https://dblp.org/rec/conf/wabi/LamGS09URL#5211804Pietro di LenaPiero FariselliLuciano MargaraMarco VassuraRita CasadioOn the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices.WABI62-722009Conference and Workshop Papersclosedconf/wabi/LenaFMVC0910.1007/978-3-642-04241-6_6https://doi.org/10.1007/978-3-642-04241-6_6https://dblp.org/rec/conf/wabi/LenaFMVC09URL#5211805Qian PengMax A. AlekseyevGlenn TeslerPavel A. PevznerDecoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes.WABI220-2322009Conference and Workshop Papersclosedconf/wabi/PengATP0910.1007/978-3-642-04241-6_19https://doi.org/10.1007/978-3-642-04241-6_19https://dblp.org/rec/conf/wabi/PengATP09URL#5211806Pasi RastasA General Framework for Local Pairwise Alignment Statistics with Gaps.WABI233-2452009Conference and Workshop Papersclosedconf/wabi/Rastas0910.1007/978-3-642-04241-6_20https://doi.org/10.1007/978-3-642-04241-6_20https://dblp.org/rec/conf/wabi/Rastas09URL#5211807Eric RivalsLeena SalmelaPetteri KiiskinenPetri KalsiJorma Tarhiompscan: Fast Localisation of Multiple Reads in Genomes.WABI246-2602009Conference and Workshop Papersclosedconf/wabi/RivalsSKKT0910.1007/978-3-642-04241-6_21https://doi.org/10.1007/978-3-642-04241-6_21https://dblp.org/rec/conf/wabi/RivalsSKKT09URL#5211808Raheleh SalariRolf BackofenSüleyman Cenk SahinalpFast Prediction of RNA-RNA Interaction.WABI261-2722009Conference and Workshop Papersclosedconf/wabi/SalariBS0910.1007/978-3-642-04241-6_22https://doi.org/10.1007/978-3-642-04241-6_22https://dblp.org/rec/conf/wabi/SalariBS09URL#5211809Saeed SalemMohammed J. ZakiChris BystroffFlexSnap: Flexible Non-sequential Protein Structure Alignment.WABI273-2852009Conference and Workshop Papersclosedconf/wabi/SalemZB0910.1007/978-3-642-04241-6_23https://doi.org/10.1007/978-3-642-04241-6_23https://dblp.org/rec/conf/wabi/SalemZB09URL#5211810Kengo SatoMichiaki HamadaToutai MituyamaKiyoshi AsaiYasubumi SakakibaraA Non-parametric Bayesian Approach for Predicting RNA Secondary Structures.WABI286-2972009Conference and Workshop Papersclosedconf/wabi/SatoHMAS0910.1007/978-3-642-04241-6_24https://doi.org/10.1007/978-3-642-04241-6_24https://dblp.org/rec/conf/wabi/SatoHMAS09URL#5211811Marcel H. SchulzSebastian Köhler 0001Sebastian Bauer 0002Martin VingronPeter N. RobinsonExact Score Distribution Computation for Similarity Searches in Ontologies.WABI298-3092009Conference and Workshop Papersclosedconf/wabi/SchulzKBVR0910.1007/978-3-642-04241-6_25https://doi.org/10.1007/978-3-642-04241-6_25https://dblp.org/rec/conf/wabi/SchulzKBVR09URL#5211812Tetsuo ShibuyaJesper Jansson 0001Kunihiko SadakaneLinear-Time Protein 3-D Structure Searching with Insertions and Deletions.WABI310-3202009Conference and Workshop Papersclosedconf/wabi/ShibuyaJS0910.1007/978-3-642-04241-6_26https://doi.org/10.1007/978-3-642-04241-6_26https://dblp.org/rec/conf/wabi/ShibuyaJS09URL#5211813Kenneth SundbergMark J. ClementQuinn SnellVisualizing Phylogenetic Treespace Using Cartographic Projections.WABI321-3322009Conference and Workshop Papersclosedconf/wabi/SundbergCS0910.1007/978-3-642-04241-6_27https://doi.org/10.1007/978-3-642-04241-6_27https://dblp.org/rec/conf/wabi/SundbergCS09URL#5211814M. Shel SwensonFrançois BarbançonC. Randal LinderTandy J. WarnowA Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen.WABI333-3442009Conference and Workshop Papersclosedconf/wabi/SwensonBLW0910.1007/978-3-642-04241-6_28https://doi.org/10.1007/978-3-642-04241-6_28https://dblp.org/rec/conf/wabi/SwensonBLW09URL#5211815Fadi TowficM. Heather West GreenleeVasant G. HonavarAligning Biomolecular Networks Using Modular Graph Kernels.WABI345-3612009Conference and Workshop Papersclosedconf/wabi/TowficGH0910.1007/978-3-642-04241-6_29https://doi.org/10.1007/978-3-642-04241-6_29https://dblp.org/rec/conf/wabi/TowficGH09URL#5211816