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@article{DBLP:journals/bioinformatics/Abdul-GaderMW11,
author = {Ali Abdul{-}Gader and
Andrew John Miles and
B. A. Wallace},
title = {A reference dataset for the analyses of membrane protein secondary
structures and transmembrane residues using circular dichroism spectroscopy},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1630--1636},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr234},
doi = {10.1093/BIOINFORMATICS/BTR234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Abdul-GaderMW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AboKTC11,
author = {Ryan Abo and
Stacey Knight and
Alun Thomas and
Nicola J. Camp},
title = {Automated construction and testing of multi-locus gene-gene associations},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {134--136},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq616},
doi = {10.1093/BIOINFORMATICS/BTQ616},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AboKTC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbyzovG11,
author = {Alexej Abyzov and
Mark Gerstein},
title = {{AGE:} defining breakpoints of genomic structural variants at single-nucleotide
resolution, through optimal alignments with gap excision},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {595--603},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq713},
doi = {10.1093/BIOINFORMATICS/BTQ713},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbyzovG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AdamsHGHH11,
author = {Nico Adams and
Robert Hoehndorf and
Georgios V. Gkoutos and
Gesine Hansen and
Christian Hennig},
title = {{PIDO:} the primary immunodeficiency disease ontology},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3193--3199},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr531},
doi = {10.1093/BIOINFORMATICS/BTR531},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AdamsHGHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgarwalY11,
author = {Shashank Agarwal and
Hong Yu},
title = {Figure summarizer browser extensions for PubMed Central},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1723--1724},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr194},
doi = {10.1093/BIOINFORMATICS/BTR194},
timestamp = {Sun, 22 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgarwalY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AggioVR11,
author = {Raphael B. M. Aggio and
Silas Granato Villas{-}B{\^{o}}as and
Katya Ruggiero},
title = {Metab: an {R} package for high-throughput analysis of metabolomics
data generated by {GC-MS}},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2316--2318},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr379},
doi = {10.1093/BIOINFORMATICS/BTR379},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AggioVR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhmadSHSBDHKBBH11,
author = {Isthiaq Ahmad and
Frank Suits and
Berend Hoekman and
Morris A. Swertz and
Heorhiy Byelas and
Martijn Dijkstra and
Rob W. W. Hooft and
Dmitry Katsubo and
Bas van Breukelen and
Rainer Bischoff and
Peter Horvatovich},
title = {A high-throughput processing service for retention time alignment
of complex proteomics and metabolomics {LC-MS} data},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1176--1178},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr094},
doi = {10.1093/BIOINFORMATICS/BTR094},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhmadSHSBDHKBBH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhnYPSP11,
author = {Jaegyoon Ahn and
Youngmi Yoon and
Chihyun Park and
Eunji Shin and
Sanghyun Park},
title = {Integrative gene network construction for predicting a set of complementary
prostate cancer genes},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1846--1853},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr283},
doi = {10.1093/BIOINFORMATICS/BTR283},
timestamp = {Wed, 15 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhnYPSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AioaneiBS11,
author = {Daniel Aioanei and
Marco Brucale and
Bruno Samor{\`{\i}}},
title = {Open source platform for the execution and analysis of mechanical
refolding experiments},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {423--425},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq663},
doi = {10.1093/BIOINFORMATICS/BTQ663},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AioaneiBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AiroldiHS11,
author = {Edoardo M. Airoldi and
Katherine A. Heller and
Ricardo Bezerra de Andrade e Silva},
title = {Small sets of interacting proteins suggest functional linkage mechanisms
via Bayesian analogical reasoning},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {374--382},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr236},
doi = {10.1093/BIOINFORMATICS/BTR236},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AiroldiHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AladagES11,
author = {Ahmet Emre Aladag and
Cesim Erten and
Melih S{\"{o}}zdinler},
title = {Reliability-Oriented bioinformatic networks visualization},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1583--1584},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr178},
doi = {10.1093/BIOINFORMATICS/BTR178},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AladagES11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlexandrovK11,
author = {Theodore Alexandrov and
Jan Hendrik Kobarg},
title = {Efficient spatial segmentation of large imaging mass spectrometry
datasets with spatially aware clustering},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {230--238},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr246},
doi = {10.1093/BIOINFORMATICS/BTR246},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlexandrovK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllenM11,
author = {Genevera I. Allen and
Mirjana Maletic{-}Savatic},
title = {Sparse non-negative generalized {PCA} with applications to metabolomics},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3029--3035},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr522},
doi = {10.1093/BIOINFORMATICS/BTR522},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AllenM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlonsoJBVDICM11,
author = {Arnald Alonso and
Antonio Juli{\`{a}} and
Antoni Beltran and
Maria Vinaixa and
Marta D{\'{\i}}az and
Lourdes Iba{\~{n}}ez and
Xavier Correig and
Sara Marsal},
title = {AStream: an {R} package for annotating {LC/MS} metabolomic data},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1339--1340},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr138},
doi = {10.1093/BIOINFORMATICS/BTR138},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlonsoJBVDICM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlthammerGBBE11,
author = {Sonja Althammer and
Juan Gonz{\'{a}}lez{-}Vallinas and
Cecilia Ballar{\'{e}} and
Miguel Beato and
Eduardo Eyras},
title = {Pyicos: a versatile toolkit for the analysis of high-throughput sequencing
data},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3333--3340},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr570},
doi = {10.1093/BIOINFORMATICS/BTR570},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlthammerGBBE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AltmannWQRBM11,
author = {Andr{\'{e}} Altmann and
Peter Weber and
Carina Quast and
Monika Rex{-}Haffner and
Elisabeth B. Binder and
Bertram M{\"{u}}ller{-}Myhsok},
title = {vipR: variant identification in pooled {DNA} using {R}},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {77--84},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr205},
doi = {10.1093/BIOINFORMATICS/BTR205},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AltmannWQRBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AngiuoliS11,
author = {Samuel V. Angiuoli and
Steven L. Salzberg},
title = {Mugsy: fast multiple alignment of closely related whole genomes},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {334--342},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq665},
doi = {10.1093/BIOINFORMATICS/BTQ665},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AngiuoliS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnjosMEFS11,
author = {Ant{\'{o}}nio dos Anjos and
Anders L. B. M{\o}ller and
Bjarne Kj{\ae}r Ersb{\o}ll and
Christine Finnie and
Hamid Reza Shahbazkia},
title = {New approach for segmentation and quantification of two-dimensional
gel electrophoresis images},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {368--375},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq666},
doi = {10.1093/BIOINFORMATICS/BTQ666},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnjosMEFS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntaoB11,
author = {Tiago Antao and
Mark A. Beaumont},
title = {Mcheza: a workbench to detect selection using dominant markers},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1717--1718},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr253},
doi = {10.1093/BIOINFORMATICS/BTR253},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntaoB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntaoH11,
author = {Tiago Antao and
Ian M. Hastings},
title = {ogaraK: a population genetics simulator for malaria},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1335--1336},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr139},
doi = {10.1093/BIOINFORMATICS/BTR139},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntaoH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ApeltsinMBF11,
author = {Leonard Apeltsin and
John H. Morris and
Patricia C. Babbitt and
Thomas E. Ferrin},
title = {Improving the quality of protein similarity network clustering algorithms
using the network edge weight distribution},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {326--333},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq655},
doi = {10.1093/BIOINFORMATICS/BTQ655},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ApeltsinMBF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AppelGS11,
author = {Inka J. Appel and
Wolfram Gronwald and
Rainer Spang},
title = {Estimating classification probabilities in high-dimensional diagnostic
studies},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2563--2570},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr434},
doi = {10.1093/BIOINFORMATICS/BTR434},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AppelGS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AriyaratneS11,
author = {Pramila Nuwantha Ariyaratne and
Wing{-}Kin Sung},
title = {PE-Assembler: \emph{de novo} assembler using short paired-end reads},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {167--174},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq626},
doi = {10.1093/BIOINFORMATICS/BTQ626},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AriyaratneS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArmstrongVGW11,
author = {Craig T. Armstrong and
Thomas L. Vincent and
Peter J. Green and
Derek N. Woolfson},
title = {{SCORER} 2.0: an algorithm for distinguishing parallel dimeric and
trimeric coiled-coil sequences},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1908--1914},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr299},
doi = {10.1093/BIOINFORMATICS/BTR299},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArmstrongVGW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AshkenazyUK11,
author = {Haim Ashkenazy and
Ron Unger and
Yossef Kliger},
title = {Hidden conformations in protein structures},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1941--1947},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr292},
doi = {10.1093/BIOINFORMATICS/BTR292},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AshkenazyUK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsifS11,
author = {Hafiz Muhammad Shahzad Asif and
Guido Sanguinetti},
title = {Large-scale learning of combinatorial transcriptional dynamics from
gene expression},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1277--1283},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr113},
doi = {10.1093/BIOINFORMATICS/BTR113},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsifS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AthaleC11,
author = {Chaitanya A. Athale and
Hemangi Chaudhari},
title = {Population length variability and nucleoid numbers in \emph{Escherichia
coli}},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2944--2948},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr501},
doi = {10.1093/BIOINFORMATICS/BTR501},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AthaleC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AudenaertPBPDPM11,
author = {Pieter Audenaert and
Thomas Van Parys and
Florian Brondel and
Mario Pickavet and
Piet Demeester and
Yves Van de Peer and
Tom Michoel},
title = {CyClus3D: a Cytoscape plugin for clustering network motifs in integrated
networks},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1587--1588},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr182},
doi = {10.1093/BIOINFORMATICS/BTR182},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AudenaertPBPDPM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaderGM11,
author = {Kai Christian Bader and
Christian Grothoff and
Harald Meier},
title = {Comprehensive and relaxed search for oligonucleotide signatures in
hierarchically clustered sequence datasets},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1546--1554},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr161},
doi = {10.1093/BIOINFORMATICS/BTR161},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaderGM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaekM11,
author = {Jangsun Baek and
Geoffrey J. McLachlan},
title = {Mixtures of common \emph{t}-factor analyzers for clustering high-dimensional
microarray data},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1269--1276},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr112},
doi = {10.1093/BIOINFORMATICS/BTR112},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaekM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bailey11,
author = {Timothy L. Bailey},
title = {{DREME:} motif discovery in transcription factor ChIP-seq data},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1653--1659},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr261},
doi = {10.1093/BIOINFORMATICS/BTR261},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bailey11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BajajCR11,
author = {Chandrajit L. Bajaj and
Rezaul Alam Chowdhury and
Muhibur Rasheed},
title = {A dynamic data structure for flexible molecular maintenance and informatics},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {55--62},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq627},
doi = {10.1093/BIOINFORMATICS/BTQ627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BajajCR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakanMB11,
author = {Ahmet Bakan and
Lidio M. C. Meireles and
Ivet Bahar},
title = {\emph{ProDy}: Protein Dynamics Inferred from Theory and Experiments},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1575--1577},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr168},
doi = {10.1093/BIOINFORMATICS/BTR168},
timestamp = {Wed, 23 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakanMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldoF11,
author = {Jose Ignacio Agulleiro Baldo and
Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez},
title = {Fast tomographic reconstruction on multicore computers},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {582--583},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq692},
doi = {10.1093/BIOINFORMATICS/BTQ692},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldoF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Balsa-CantoB11,
author = {Eva Balsa{-}Canto and
Julio R. Banga},
title = {AMIGO, a toolbox for advanced model identification in systems biology
using global optimization},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2311--2313},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr370},
doi = {10.1093/BIOINFORMATICS/BTR370},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Balsa-CantoB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BalzerMJ11,
author = {Susanne Balzer and
Ketil Malde and
Inge Jonassen},
title = {Systematic exploration of error sources in pyrosequencing flowgram
data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {304--309},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr251},
doi = {10.1093/BIOINFORMATICS/BTR251},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BalzerMJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BalzerMLSJ11,
author = {Susanne Balzer and
Ketil Malde and
Anders Lanz{\'{e}}n and
Animesh Sharma and
Inge Jonassen},
title = {Characteristics of 454 pyrosequencing data - enabling realistic simulation
with flowsim},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2171},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr384},
doi = {10.1093/BIOINFORMATICS/BTR384},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BalzerMLSJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BansalL11,
author = {Vikas Bansal and
Ondrej Libiger},
title = {A probabilistic method for the detection and genotyping of small indels
from population-scale sequence data},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2047--2053},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr344},
doi = {10.1093/BIOINFORMATICS/BTR344},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BansalL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaoJKG11,
author = {Ergude Bao and
Tao Jiang and
Isgouhi Kaloshian and
Thomas Girke},
title = {{SEED:} efficient clustering of next-generation sequences},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2502--2509},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr447},
doi = {10.1093/BIOINFORMATICS/BTR447},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaoJKG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaragattiP11,
author = {Me{\"{\i}}li C. Baragatti and
Denys Pommeret},
title = {Comments on 'Bayesian variable selection for disease classification
using gene expression data'},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1194},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr071},
doi = {10.1093/BIOINFORMATICS/BTR071},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaragattiP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarnettGQSM11,
author = {Derek W. Barnett and
Erik K. Garrison and
Aaron R. Quinlan and
Michael Str{\"{o}}mberg and
Gabor T. Marth},
title = {BamTools: a {C++} {API} and toolkit for analyzing and managing {BAM}
files},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1691--1692},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr174},
doi = {10.1093/BIOINFORMATICS/BTR174},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarnettGQSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaronBTDSSHR11,
author = {Daniel Baron and
Audrey Bihou{\'{e}}e and
Raluca Teusan and
Emeric Dubois and
Fr{\'{e}}d{\'{e}}rique Savagner and
Marja Steenman and
R{\'{e}}mi Houlgatte and
G{\'{e}}rard Ramstein},
title = {MADGene: retrieval and processing of gene identifier lists for the
analysis of heterogeneous microarray datasets},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {725--726},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq710},
doi = {10.1093/BIOINFORMATICS/BTQ710},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaronBTDSSHR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BartschBHKMJKJJR11,
author = {Annekathrin Bartsch and
Boyke Bunk and
Isam Haddad and
Johannes Klein and
Richard M{\"{u}}nch and
Thorsten Johl and
Uwe K{\"{a}}rst and
Lothar J{\"{a}}nsch and
Dieter Jahn and
Ida Retter},
title = {GeneReporter - sequence-based document retrieval and annotation},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1034--1035},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr047},
doi = {10.1093/BIOINFORMATICS/BTR047},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BartschBHKMJKJJR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaslerESN11,
author = {Georg Basler and
Oliver Ebenh{\"{o}}h and
Joachim Selbig and
Zoran Nikoloski},
title = {Mass-balanced randomization of metabolic networks},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1397--1403},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr145},
doi = {10.1093/BIOINFORMATICS/BTR145},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaslerESN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaslerN11,
author = {Georg Basler and
Zoran Nikoloski},
title = {\emph{JMassBalance}: mass-balanced randomization and analysis of metabolic
networks},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2761--2762},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr448},
doi = {10.1093/BIOINFORMATICS/BTR448},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaslerN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BattkeSHN11,
author = {Florian Battke and
Stephan Symons and
Alexander Herbig and
Kay Nieselt},
title = {\emph{GaggleBridge}: collaborative data analysis},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2612--2613},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr429},
doi = {10.1093/BIOINFORMATICS/BTR429},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BattkeSHN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BauerEK11,
author = {Tobias Bauer and
Roland Eils and
Rainer K{\"{o}}nig},
title = {{RIP:} the regulatory interaction predictor - a machine learning-based
approach for predicting target genes of transcription factors},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2239--2247},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr366},
doi = {10.1093/BIOINFORMATICS/BTR366},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BauerEK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BauerRG11,
author = {Sebastian Bauer and
Peter N. Robinson and
Julien Gagneur},
title = {Model-based gene set analysis for Bioconductor},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1882--1883},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr296},
doi = {10.1093/BIOINFORMATICS/BTR296},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BauerRG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BauerWBCBDB11,
author = {Denis C. Bauer and
Kai Willadsen and
Fabian A. Buske and
Kim{-}Anh L{\^{e}} Cao and
Timothy L. Bailey and
Graham Dellaire and
Mikael Bod{\'{e}}n},
title = {Sorting the nuclear proteome},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {7--14},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr217},
doi = {10.1093/BIOINFORMATICS/BTR217},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BauerWBCBDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BayerMSSCWM11,
author = {Micha Bayer and
Iain Milne and
Gordon Stephen and
Paul D. Shaw and
Linda Cardle and
Frank Wright and
David F. Marshall},
title = {Comparative visualization of genetic and physical maps with Strudel},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1307--1308},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr111},
doi = {10.1093/BIOINFORMATICS/BTR111},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BayerMSSCWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BecavinTMLB11,
author = {Christophe B{\'{e}}cavin and
Nicolas Tchitchek and
Colette Mintsa{-}Eya and
Annick Lesne and
Arndt Benecke},
title = {Improving the efficiency of multidimensional scaling in the analysis
of high-dimensional data using singular value decomposition},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1413--1421},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr143},
doi = {10.1093/BIOINFORMATICS/BTR143},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BecavinTMLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckSF11,
author = {Daniel Beck and
Matt Settles and
James A. Foster},
title = {OTUbase: an {R} infrastructure package for operational taxonomic unit
data},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1700--1701},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr196},
doi = {10.1093/BIOINFORMATICS/BTR196},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckSF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BedoK11,
author = {Justin Bedo and
Adam Kowalczyk},
title = {Genome annotation test with validation on transcription start site
and ChIP-Seq for Pol-II binding data},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1610--1617},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr263},
doi = {10.1093/BIOINFORMATICS/BTR263},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BedoK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BellePHS11,
author = {Vanya Van Belle and
Kristiaan Pelckmans and
Sabine Van Huffel and
Johan A. K. Suykens},
title = {Improved performance on high-dimensional survival data by application
of Survival-SVM},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {87--94},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq617},
doi = {10.1093/BIOINFORMATICS/BTQ617},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BellePHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeltrameCPRGDRDC11,
author = {Luca Beltrame and
Enrica Calura and
Razvan R. Popovici and
Lisa Rizzetto and
Damariz Rivero Guedez and
Michele Donato and
Chiara Romualdi and
Sorin Draghici and
Duccio Cavalieri},
title = {The Biological Connection Markup Language: a SBGN-compliant format
for visualization, filtering and analysis of biological pathways},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2127--2133},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr339},
doi = {10.1093/BIOINFORMATICS/BTR339},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeltrameCPRGDRDC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BenkertBS11,
author = {Pascal Benkert and
Marco Biasini and
Torsten Schwede},
title = {Toward the estimation of the absolute quality of individual protein
structure models},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {343--350},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq662},
doi = {10.1093/BIOINFORMATICS/BTQ662},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BenkertBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerengerZSZ11,
author = {Francois Berenger and
Yong Zhou and
Rojan Shrestha and
Kam Y. J. Zhang},
title = {Entropy-accelerated exact clustering of protein decoys},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {939--945},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr072},
doi = {10.1093/BIOINFORMATICS/BTR072},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerengerZSZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BergerS11,
author = {Simon A. Berger and
Alexandros Stamatakis},
title = {Aligning short reads to reference alignments and trees},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2068--2075},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr320},
doi = {10.1093/BIOINFORMATICS/BTR320},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BergerS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bergey11,
author = {Christina M. Bergey},
title = {\emph{AluHunter}: a database of potentially polymorphic \emph{Alu}
insertions for use in primate phylogeny and population genetics},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2924--2925},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr491},
doi = {10.1093/BIOINFORMATICS/BTR491},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bergey11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerkEM11,
author = {Maurice Berk and
Timothy M. D. Ebbels and
Giovanni Montana},
title = {A statistical framework for biomarker discovery in metabolomic time
course data},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1979--1985},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr289},
doi = {10.1093/BIOINFORMATICS/BTR289},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerkEM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerthoumieuxBJKC11,
author = {Sara Berthoumieux and
Matteo Brilli and
Hidde de Jong and
Daniel Kahn and
Eugenio Cinquemani},
title = {Identification of metabolic network models from incomplete high-throughput
datasets},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {186--195},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr225},
doi = {10.1093/BIOINFORMATICS/BTR225},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerthoumieuxBJKC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BertiniCFGR11,
author = {Ivano Bertini and
David A. Case and
Lucio Ferella and
Andrea Giachetti and
Antonio Rosato},
title = {A Grid-enabled web portal for {NMR} structure refinement with {AMBER}},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2384--2390},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr415},
doi = {10.1093/BIOINFORMATICS/BTR415},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BertiniCFGR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhattacharyaHS11,
author = {Sanmitra Bhattacharya and
Viet Ha{-}Thuc and
Padmini Srinivasan},
title = {MeSH: a window into full text for document summarization},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {120--128},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr223},
doi = {10.1093/BIOINFORMATICS/BTR223},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhattacharyaHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BielejecRSL11,
author = {Filip Bielejec and
Andrew Rambaut and
Marc A. Suchard and
Philippe Lemey},
title = {{SPREAD:} spatial phylogenetic reconstruction of evolutionary dynamics},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2910--2912},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr481},
doi = {10.1093/BIOINFORMATICS/BTR481},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BielejecRSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiswasRUMRPS11,
author = {Ambarish Biswas and
Raghuraj Rao and
Shivshankar Umashankar and
Kalyan C. Mynampati and
Sheela Reuben and
Gauri Parab and
Sanjay Swarup},
title = {datPAV - an online processing, analysis and visualization tool for
exploratory investigation of experimental data},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1585--1586},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr179},
doi = {10.1093/BIOINFORMATICS/BTR179},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BiswasRUMRPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlakesTRK11,
author = {Jonathan Blakes and
Jamie Twycross and
Francisco Jos{\'{e}} Romero{-}Campero and
Natalio Krasnogor},
title = {The Infobiotics Workbench: an integrated \emph{in silico} modelling
platform for Systems and Synthetic Biology},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3323--3324},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr571},
doi = {10.1093/BIOINFORMATICS/BTR571},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlakesTRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlankenbergTNT11,
author = {Daniel J. Blankenberg and
James Taylor and
Anton Nekrutenko},
title = {Making whole genome multiple alignments usable for biologists},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2426--2428},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr398},
doi = {10.1093/BIOINFORMATICS/BTR398},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlankenbergTNT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlomJDJKSG11,
author = {Jochen Blom and
Tobias Jakobi and
Daniel Doppmeier and
Sebastian Jaenicke and
J{\"{o}}rn Kalinowski and
Jens Stoye and
Alexander Goesmann},
title = {Exact and complete short-read alignment to microbial genomes using
Graphics Processing Unit programming},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1351--1358},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr151},
doi = {10.1093/BIOINFORMATICS/BTR151},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlomJDJKSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlondeMVABK11,
author = {Ward Blond{\'{e}} and
Vladimir Mironov and
Aravind Venkatesan and
Erick Antezana and
Bernard De Baets and
Martin Kuiper},
title = {Reasoning with bio-ontologies: using relational closure rules to enable
practical querying},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1562--1568},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr164},
doi = {10.1093/BIOINFORMATICS/BTR164},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlondeMVABK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BodenhoferKH11,
author = {Ulrich Bodenhofer and
Andreas Kothmeier and
Sepp Hochreiter},
title = {APCluster: an {R} package for affinity propagation clustering},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2463--2464},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr406},
doi = {10.1093/BIOINFORMATICS/BTR406},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BodenhoferKH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoetzerHJBP11,
author = {Marten Boetzer and
Christiaan V. Henkel and
Hans J. Jansen and
Derek Butler and
Walter Pirovano},
title = {Scaffolding pre-assembled contigs using {SSPACE}},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {578--579},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq683},
doi = {10.1093/BIOINFORMATICS/BTQ683},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoetzerHJBP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaZBVJDB11,
author = {Valentina Boeva and
Andrei Yu. Zinovyev and
Kevin Bleakley and
Jean{-}Philippe Vert and
Isabelle Janoueix{-}Lerosey and
Olivier Delattre and
Emmanuel Barillot},
title = {Control-free calling of copy number alterations in deep-sequencing
data using GC-content normalization},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {268--269},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq635},
doi = {10.1093/BIOINFORMATICS/BTQ635},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaZBVJDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BolouriDA11,
author = {Hamid Bolouri and
Rajiv Dulepet and
Michael Angerman},
title = {Menu-driven cloud computing and resource sharing for {R} and Bioconductor},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2309--2310},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr364},
doi = {10.1093/BIOINFORMATICS/BTR364},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BolouriDA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonatoBBSAD11,
author = {Vin{\'{\i}}cius Bonato and
Veerabhadran Baladandayuthapani and
Bradley M. Broom and
Erik P. Sulman and
Kenneth D. Aldape and
Kim{-}Anh Do},
title = {Bayesian ensemble methods for survival prediction in gene expression
data},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {359--367},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq660},
doi = {10.1093/BIOINFORMATICS/BTQ660},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonatoBBSAD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonzanniZOF11,
author = {Nicola Bonzanni and
Nianshu Zhang and
Stephen G. Oliver and
Jasmin Fisher},
title = {The role of proteosome-mediated proteolysis in modulating potentially
harmful transcription factor activity in \emph{Saccharomyces cerevisiae}},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {283--287},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr211},
doi = {10.1093/BIOINFORMATICS/BTR211},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonzanniZOF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BotR11,
author = {Jan Bot and
Marcel J. T. Reinders},
title = {CytoscapeRPC: a plugin to create, modify and query Cytoscape networks
from scripting languages},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2451--2452},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr388},
doi = {10.1093/BIOINFORMATICS/BTR388},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BotR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BottoloCHLPTTR11,
author = {Leonardo Bottolo and
Marc Chadeau{-}Hyam and
David I. Hastie and
Sarah R. Langley and
Enrico Petretto and
Laurence Tiret and
David Tregouet and
Sylvia Richardson},
title = {\emph{ESS}++: a {C++} objected-oriented algorithm for Bayesian stochastic
search model exploration},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {587--588},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq684},
doi = {10.1093/BIOINFORMATICS/BTQ684},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BottoloCHLPTTR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BouaynayaSS11,
author = {Nidhal Bouaynaya and
Roman Shterenberg and
Dan Schonfeld},
title = {Inverse perturbation for optimal intervention in gene regulatory networks},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {103--110},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq605},
doi = {10.1093/BIOINFORMATICS/BTQ605},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BouaynayaSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bowsher11,
author = {Clive G. Bowsher},
title = {Automated analysis of information processing, kinetic independence
and modular architecture in biochemical networks using {MIDIA}},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {584--586},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq694},
doi = {10.1093/BIOINFORMATICS/BTQ694},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bowsher11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoydHSFECDFGSTK11,
author = {Lauren Becnel Boyd and
Scott P. Hunicke{-}Smith and
Grace A. Stafford and
Elaine T. Freund and
Michele Ehlman and
Uma Chandran and
Robert Dennis and
Anna T. Fernandez and
Stephen Goldstein and
David Steffen and
Benjamin Tycko and
Juli D. Klemm},
title = {The caBIG{\textregistered} Life Science Business Architecture Model},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1429--1435},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr141},
doi = {10.1093/BIOINFORMATICS/BTR141},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoydHSFECDFGSTK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrancotteBBRRB11,
author = {Bryan Brancotte and
Anne Biton and
Isabelle Bernard{-}Pierrot and
Fran{\c{c}}ois Radvanyi and
Fabien Reyal and
Sarah Cohen Boulakia},
title = {Gene List significance at-a-glance with GeneValorization},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1187--1189},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr073},
doi = {10.1093/BIOINFORMATICS/BTR073},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrancotteBBRRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrittnacherFHJRR11,
author = {Mitchell J. Brittnacher and
Christine Fong and
H. S. Hayden and
M. A. Jacobs and
Matthew Radey and
Laurence Rohmer},
title = {{PGAT:} a multistrain analysis resource for microbial genomes},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2429--2430},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr418},
doi = {10.1093/BIOINFORMATICS/BTR418},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrittnacherFHJRR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownWGKBKMND11,
author = {Marie Brown and
David C. Wedge and
Royston Goodacre and
Douglas B. Kell and
Philip N. Baker and
Louise C. Kenny and
Mamas A. Mamas and
Ludwig Neyses and
Warwick B. Dunn},
title = {Automated workflows for accurate mass-based putative metabolite identification
in LC/MS-derived metabolomic datasets},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1108--1112},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr079},
doi = {10.1093/BIOINFORMATICS/BTR079},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownWGKBKMND11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuiKS11,
author = {Quoc{-}Chinh Bui and
Sophia Katrenko and
Peter M. A. Sloot},
title = {A hybrid approach to extract protein-protein interactions},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {259--265},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq620},
doi = {10.1093/BIOINFORMATICS/BTQ620},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuiKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CairnsSSSLT11,
author = {Jonathan M. Cairns and
Christiana Spyrou and
Rory Stark and
Mike L. Smith and
Andy G. Lynch and
Simon Tavar{\'{e}}},
title = {BayesPeak - an {R} package for analysing ChIP-seq data},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {713--714},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq685},
doi = {10.1093/BIOINFORMATICS/BTQ685},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CairnsSSSLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoSMHTJ11,
author = {Yang Cao and
Lin Song and
Zhichao Miao and
Yun Hu and
Liqing Tian and
Taijiao Jiang},
title = {Improved side-chain modeling by coupling clash-detection guided iterative
search with rotamer relaxation},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {785--790},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr009},
doi = {10.1093/BIOINFORMATICS/BTR009},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoSMHTJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CapriottiNMM11,
author = {Emidio Capriotti and
Tom{\'{a}}s Norambuena and
Marc A. Mart{\'{\i}}{-}Renom and
Francisco Melo},
title = {All-atom knowledge-based potential for {RNA} structure prediction
and assessment},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1086--1093},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr093},
doi = {10.1093/BIOINFORMATICS/BTR093},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CapriottiNMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarvalhoFPYBB11,
author = {Paulo C. Carvalho and
Juliana S. G. Fischer and
Jonas Perales and
John R. Yates III and
Valmir Carneiro Barbosa and
Elias Bareinboim},
title = {Analyzing marginal cases in differential shotgun proteomics},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {275--276},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq632},
doi = {10.1093/BIOINFORMATICS/BTQ632},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarvalhoFPYBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CeredaSCP11,
author = {Matteo Cereda and
Manuela Sironi and
Matteo Cavalleri and
Uberto Pozzoli},
title = {GeCo++: a {C++} library for genomic features computation and annotation
in the presence of variants},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1313--1315},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr123},
doi = {10.1093/BIOINFORMATICS/BTR123},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CeredaSCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChagoyenP11,
author = {Monica Chagoyen and
Florencio Pazos},
title = {MBRole: enrichment analysis of metabolomic data},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {730--731},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr001},
doi = {10.1093/BIOINFORMATICS/BTR001},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChagoyenP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChanJ11,
author = {Siu Hung Joshua Chan and
Ping Ji},
title = {Decomposing flux distributions into elementary flux modes in genome-scale
metabolic networks},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2256--2262},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr367},
doi = {10.1093/BIOINFORMATICS/BTR367},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChanJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChanWLWLTL11,
author = {Tak{-}Ming Chan and
Ka{-}Chun Wong and
Kin{-}Hong Lee and
Man Hon Wong and
Chi{-}Kong Lau and
Stephen Kwok{-}Wing Tsui and
Kwong{-}Sak Leung},
title = {Discovering approximate-associated sequence patterns for protein-DNA
interactions},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {471--478},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq682},
doi = {10.1093/BIOINFORMATICS/BTQ682},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChanWLWLTL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCCHCBWWSW11,
author = {Li Chen and
Tsung{-}Han Chan and
Peter L. Choyke and
Elizabeth M. C. Hillman and
Chong{-}Yung Chi and
Zaver M. Bhujwalla and
Ge Wang and
Sean S. Wang and
Zsolt Szabo and
Yue Joseph Wang},
title = {{CAM-CM:} a signal deconvolution tool for \emph{in vivo} dynamic contrast-enhanced
imaging of complex tissues},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2607--2609},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr436},
doi = {10.1093/BIOINFORMATICS/BTR436},
timestamp = {Wed, 17 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCCHCBWWSW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenJJ11,
author = {Yong Chen and
Tao Jiang and
Rui Jiang},
title = {Uncover disease genes by maximizing information flow in the phenome-interactome
network},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {167--176},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr213},
doi = {10.1093/BIOINFORMATICS/BTR213},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenJJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenMWWG11,
author = {Bin Chen and
Kevin J. McConnell and
Nikil Wale and
David J. Wild and
Eric M. Gifford},
title = {Comparing bioassay response and similarity ensemble approaches to
probing protein pharmacology},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3044--3049},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr506},
doi = {10.1093/BIOINFORMATICS/BTR506},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenMWWG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenOLG11,
author = {Shu{-}An Chen and
Yu{-}Yen Ou and
Tzong{-}Yi Lee and
M. Michael Gromiha},
title = {Prediction of transporter targets using efficient {RBF} networks with
{PSSM} profiles and biochemical properties},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2062--2067},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr340},
doi = {10.1093/BIOINFORMATICS/BTR340},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenOLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenWJ11,
author = {Li Chen and
George Wu and
Hongkai Ji},
title = {hmChIP: a database and web server for exploring publicly available
human and mouse ChIP-seq and ChIP-chip data},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1447--1448},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr156},
doi = {10.1093/BIOINFORMATICS/BTR156},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenWJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenXHLWMJBTLCL11,
author = {Xiujie Chen and
Jiankai Xu and
Bangqing Huang and
Jin Li and
Xin Wu and
Ling Ma and
Xiaodong Jia and
Xiusen Bian and
Fujian Tan and
Lei Liu and
Sheng Chen and
Xia Li},
title = {A sub-pathway-based approach for identifying drug response principal
network},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {649--654},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq714},
doi = {10.1093/BIOINFORMATICS/BTQ714},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenXHLWMJBTLCL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengMG11,
author = {Chao Cheng and
Renqiang Min and
Mark Gerstein},
title = {{TIP:} {A} probabilistic method for identifying transcription factor
target genes from ChIP-seq binding profiles},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3221--3227},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr552},
doi = {10.1093/BIOINFORMATICS/BTR552},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengMG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChewJAS11,
author = {Teong Han Chew and
Kwee Hong Joyce{-}Tan and
Farizuwana Akma and
Mohd Shahir Shamsir},
title = {birgHPC: creating instant computing clusters for bioinformatics and
molecular dynamics},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1320--1321},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr109},
doi = {10.1093/BIOINFORMATICS/BTR109},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChewJAS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiangLH11,
author = {Jung{-}Hsien Chiang and
Heng{-}Hui Liu and
Yi{-}Ting Huang},
title = {Condensing biomedical journal texts through paragraph ranking},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1143--1149},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr080},
doi = {10.1093/BIOINFORMATICS/BTR080},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiangLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChignolaMSFMBM11,
author = {Francesca Chignola and
Silvia Mari and
Tim J. Stevens and
Rasmus H. Fogh and
Valeria Mannella and
Wayne Boucher and
Giovanna Musco},
title = {The {CCPN} Metabolomics Project: a fast protocol for metabolite identification
by 2D-NMR},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {885--886},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr013},
doi = {10.1093/BIOINFORMATICS/BTR013},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChignolaMSFMBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChignolaVFFM11,
author = {Roberto Chignola and
Vladislav Vyshemirsky and
Marcello Farina and
Alessio Del Fabbro and
Edoardo Milotti},
title = {Modular model of TNF{\(\alpha\)} cytotoxicity},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1754--1757},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr297},
doi = {10.1093/BIOINFORMATICS/BTR297},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChignolaVFFM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChisBB11,
author = {Oana Chis and
Julio R. Banga and
Eva Balsa{-}Canto},
title = {GenSSI: a software toolbox for structural identifiability analysis
of biological models},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2610--2611},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr431},
doi = {10.1093/BIOINFORMATICS/BTR431},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChisBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChungLEF11,
author = {Clement Chung and
Jian Liu and
Andrew Emili and
Brendan J. Frey},
title = {Computational refinement of post-translational modifications predicted
from tandem mass spectrometry},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {797--806},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr017},
doi = {10.1093/BIOINFORMATICS/BTR017},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChungLEF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CibulskisMFBDG11,
author = {Kristian Cibulskis and
Aaron McKenna and
Tim Fennell and
Eric Banks and
Mark A. DePristo and
Gad Getz},
title = {ContEst: estimating cross-contamination of human samples in next-generation
sequencing data},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2601--2602},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr446},
doi = {10.1093/BIOINFORMATICS/BTR446},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CibulskisMFBDG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClineK11,
author = {Melissa S. Cline and
Rachel Karchin},
title = {Using bioinformatics to predict the functional impact of SNVs},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {441--448},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq695},
doi = {10.1093/BIOINFORMATICS/BTQ695},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClineK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CongKPSGLG11,
author = {Qian Cong and
Lisa N. Kinch and
Jimin Pei and
Shuoyong Shi and
Vyacheslav N. Grishin and
Wenlin Li and
Nick V. Grishin},
title = {An automatic method for {CASP9} free modeling structure prediction
assessment},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3371--3378},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr572},
doi = {10.1093/BIOINFORMATICS/BTR572},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CongKPSGLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ConwayB11,
author = {Thomas C. Conway and
Andrew J. Bromage},
title = {Succinct data structures for assembling large genomes},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {479--486},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq697},
doi = {10.1093/BIOINFORMATICS/BTQ697},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ConwayB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CosgunLD11,
author = {Erdal Cosgun and
Nita A. Limdi and
Christine W. Duarte},
title = {High-dimensional pharmacogenetic prediction of a continuous trait
using machine learning techniques with application to warfarin dose
prediction in African Americans},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1384--1389},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr159},
doi = {10.1093/BIOINFORMATICS/BTR159},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CosgunLD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostaMQ11,
author = {Ant{\'{o}}nio C. M. Costa and
Jos{\'{e}} Ant{\'{o}}nio Tenreiro Machado and
Maria Dulce Quelhas},
title = {Histogram-based {DNA} analysis for the visualization of chromosome,
genome and species information},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1207--1214},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr131},
doi = {10.1093/BIOINFORMATICS/BTR131},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CostaMQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuiDJW11,
author = {Jike Cui and
Todd F. DeLuca and
Jae{-}Yoon Jung and
Dennis P. Wall},
title = {Detecting biological network organization and functional gene orthologs},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2919--2920},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr485},
doi = {10.1093/BIOINFORMATICS/BTR485},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuiDJW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CurtisYSGX11,
author = {Ross E. Curtis and
Amos Yuen and
Le Song and
Anuj Goyal and
Eric P. Xing},
title = {TVNViewer: An interactive visualization tool for exploring networks
that change over time or space},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1880--1881},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr273},
doi = {10.1093/BIOINFORMATICS/BTR273},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CurtisYSGX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiCTH11,
author = {Hong{-}Jie Dai and
Yen{-}Ching Chang and
Richard Tzong{-}Han Tsai and
Wen{-}Lian Hsu},
title = {Integration of gene normalization stages and co-reference resolution
using a Markov logic network},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2586--2594},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr358},
doi = {10.1093/BIOINFORMATICS/BTR358},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiCTH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiDX11,
author = {Zhiming Dai and
Xianhua Dai and
Qian Xiang},
title = {Genome-wide {DNA} sequence polymorphisms facilitate nucleosome positioning
in yeast},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1758--1764},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr290},
doi = {10.1093/BIOINFORMATICS/BTR290},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiDX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DalePQ11,
author = {Ryan K. Dale and
Brent S. Pedersen and
Aaron R. Quinlan},
title = {Pybedtools: a flexible Python library for manipulating genomic datasets
and annotations},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3423--3424},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr539},
doi = {10.1093/BIOINFORMATICS/BTR539},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DalePQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaltonD11,
author = {Lori A. Dalton and
Edward R. Dougherty},
title = {Application of the Bayesian {MMSE} estimator for classification error
to gene expression microarray data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1822--1831},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr272},
doi = {10.1093/BIOINFORMATICS/BTR272},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaltonD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DanecekAAABDHLMSMD11,
author = {Petr Danecek and
Adam Auton and
Gon{\c{c}}alo R. Abecasis and
Cornelis A. Albers and
Eric Banks and
Mark A. DePristo and
Robert E. Handsaker and
Gerton Lunter and
Gabor T. Marth and
Stephen T. Sherry and
Gilean McVean and
Richard Durbin},
title = {The variant call format and VCFtools},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2156--2158},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr330},
doi = {10.1093/BIOINFORMATICS/BTR330},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DanecekAAABDHLMSMD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DangLVLG11,
author = {Cuong Cao Dang and
Vincent Lefort and
Le Sy Vinh and
Si Quang Le and
Olivier Gascuel},
title = {ReplacementMatrix: a web server for maximum-likelihood estimation
of amino acid replacement rate matrices},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2758--2760},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr435},
doi = {10.1093/BIOINFORMATICS/BTR435},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DangLVLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DannenfelserLSM11,
author = {Ruth Dannenfelser and
Alexander Lachmann and
Mariola Szenk and
Avi Ma'ayan},
title = {{FNV:} light-weight flash-based network and pathway viewer},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1181--1182},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr098},
doi = {10.1093/BIOINFORMATICS/BTR098},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DannenfelserLSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaoWCELS11,
author = {Phuong Dao and
Kendric Wang and
Colin C. Collins and
Martin Ester and
Anna Lapuk and
S{\"{u}}leyman Cenk Sahinalp},
title = {Optimally discriminative subnetwork markers predict response to chemotherapy},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {205--213},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr245},
doi = {10.1093/BIOINFORMATICS/BTR245},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaoWCELS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DarlingTEF11,
author = {Aaron E. Darling and
Andrew J. Tritt and
Jonathan A. Eisen and
Marc T. Facciotti},
title = {Mauve Assembly Metrics},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2756--2757},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr451},
doi = {10.1093/BIOINFORMATICS/BTR451},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DarlingTEF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DarribaTDP11,
author = {Diego Darriba and
Guillermo L. Taboada and
Ramon Doallo and
David Posada},
title = {ProtTest 3: fast selection of best-fit models of protein evolution},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1164--1165},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr088},
doi = {10.1093/BIOINFORMATICS/BTR088},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DarribaTDP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DavidDLIB11,
author = {Matei David and
Misko Dzamba and
Dan Lister and
Lucian Ilie and
Michael Brudno},
title = {SHRiMP2: Sensitive yet Practical Short Read Mapping},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1011--1012},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr046},
doi = {10.1093/BIOINFORMATICS/BTR046},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DavidDLIB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DavisPM11,
author = {Nicholas A. Davis and
Ahwan Pandey and
Brett A. McKinney},
title = {Real-world comparison of {CPU} and {GPU} implementations of SNPrank:
a network analysis tool for {GWAS}},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {284--285},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq638},
doi = {10.1093/BIOINFORMATICS/BTQ638},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DavisPM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeMaereLTYC11,
author = {Matthew Z. DeMaere and
Federico M. Lauro and
Torsten Thomas and
Sheree Yau and
Ricardo Cavicchioli},
title = {Simple high-throughput annotation pipeline {(SHAP)}},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2431--2432},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr411},
doi = {10.1093/BIOINFORMATICS/BTR411},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeMaereLTYC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DehofRBBLH11,
author = {Anna Katharina Dehof and
Alexander Rurainski and
Quang Bao Anh Bui and
Sebastian B{\"{o}}cker and
Hans{-}Peter Lenhof and
Andreas Hildebrandt},
title = {Automated bond order assignment as an optimization problem},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {619--625},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq718},
doi = {10.1093/BIOINFORMATICS/BTQ718},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DehofRBBLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DelageniereBLALVGGJLMMNSSWL11,
author = {Solange Delageni{\`{e}}re and
Patrice Brenchereau and
Ludovic Launer and
Alun W. Ashton and
Ricardo Leal and
St{\'{e}}phanie Veyrier and
Jos{\'{e}} Gabadinho and
Elspeth J. Gordon and
Samuel D. Jones and
Karl Erik Levik and
Se{\'{a}}n M. McSweeney and
St{\'{e}}phanie Monaco and
Max Nanao and
Darren Spruce and
Olof Svensson and
Martin A. Walsh and
Gordon A. Leonard},
title = {ISPyB: an information management system for synchrotron macromolecular
crystallography},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3186--3192},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr535},
doi = {10.1093/BIOINFORMATICS/BTR535},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DelageniereBLALVGGJLMMNSSWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczG11,
author = {Sebastian Deorowicz and
Szymon Grabowski},
title = {Compression of {DNA} sequence reads in {FASTQ} format},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {860--862},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr014},
doi = {10.1093/BIOINFORMATICS/BTR014},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczG11a,
author = {Sebastian Deorowicz and
Szymon Grabowski},
title = {Robust relative compression of genomes with random access},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2979--2986},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr505},
doi = {10.1093/BIOINFORMATICS/BTR505},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczG11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DespalinsMO11,
author = {Arnaud Despalins and
Souhir Marsit and
Jacques Oberto},
title = {Absynte: a web tool to analyze the evolution of orthologous archaeal
and bacterial gene clusters},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2905--2906},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr473},
doi = {10.1093/BIOINFORMATICS/BTR473},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DespalinsMO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiltheyMLM11,
author = {Alexander T. Dilthey and
Loukas Moutsianas and
Stephen Leslie and
Gil McVean},
title = {HLA*IMP - an integrated framework for imputing classical {HLA} alleles
from {SNP} genotypes},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {968--972},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr061},
doi = {10.1093/BIOINFORMATICS/BTR061},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiltheyMLM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DinasarapuSOAS11,
author = {Ashok Reddy Dinasarapu and
Brian Saunders and
Iley Ozerlat and
Kenan Azam and
Shankar Subramaniam},
title = {Signaling gateway molecule pages - a data model perspective},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1736--1738},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr190},
doi = {10.1093/BIOINFORMATICS/BTR190},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DinasarapuSOAS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DinhR11,
author = {Hieu Dinh and
Sanguthevar Rajasekaran},
title = {A memory-efficient data structure representing exact-match overlap
graphs with application for next-generation {DNA} assembly},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1901--1907},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr321},
doi = {10.1093/BIOINFORMATICS/BTR321},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DinhR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DobbinC11,
author = {Kevin K. Dobbin and
Stephanie Cooke},
title = {Lower confidence bounds for prediction accuracy in high dimensions
via {AROHIL} Monte Carlo},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3129--3134},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr542},
doi = {10.1093/BIOINFORMATICS/BTR542},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DobbinC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Domazet-LosoH11,
author = {Mirjana Domazet{-}Loso and
Bernhard Haubold},
title = {Alignment-free detection of local similarity among viral and bacterial
genomes},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1466--1472},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr176},
doi = {10.1093/BIOINFORMATICS/BTR176},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Domazet-LosoH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongSZ11,
author = {Dong Dong and
Xiaojian Shao and
Zhaolei Zhang},
title = {Differential effects of chromatin regulators and transcription factors
on gene regulation: a nucleosomal perspective},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {147--152},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq637},
doi = {10.1093/BIOINFORMATICS/BTQ637},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongSZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DonskyW11,
author = {Elad Donsky and
Haim J. Wolfson},
title = {PepCrawler: a fast RRT-based algorithm for high-resolution refinement
and binding affinity estimation of peptide inhibitors},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2836--2842},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr498},
doi = {10.1093/BIOINFORMATICS/BTR498},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DonskyW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DoughtyKBTAPK11,
author = {Emily Doughty and
Attila Kert{\'{e}}sz{-}Farkas and
Olivier Bodenreider and
Gary Thompson and
Asa Adadey and
Thomas A. Peterson and
Maricel G. Kann},
title = {Toward an automatic method for extracting cancer- and other disease-related
point mutations from the biomedical literature},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {408--415},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq667},
doi = {10.1093/BIOINFORMATICS/BTQ667},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DoughtyKBTAPK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DownPH11,
author = {Thomas A. Down and
Matias Piipari and
Tim J. P. Hubbard},
title = {Dalliance: interactive genome viewing on the web},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {889--890},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr020},
doi = {10.1093/BIOINFORMATICS/BTR020},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DownPH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DragerRDDWNZH11,
author = {Andreas Dr{\"{a}}ger and
Nicolas Rodriguez and
Marine Dumousseau and
Alexander D{\"{o}}rr and
Clemens Wrzodek and
Nicolas Le Nov{\`{e}}re and
Andreas Zell and
Michael Hucka},
title = {{JSBML:} a flexible Java library for working with {SBML}},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2167--2168},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr361},
doi = {10.1093/BIOINFORMATICS/BTR361},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DragerRDDWNZH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DriscollGMDSFHBS11,
author = {Timothy Driscoll and
Joseph L. Gabbard and
Chunhong Mao and
Oral Dalay and
Maulik Shukla and
Clark C. Freifeld and
Anne Gatewood Hoen and
John S. Brownstein and
Bruno W. S. Sobral},
title = {Integration and visualization of host-pathogen data related to infectious
diseases},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2279--2287},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr391},
doi = {10.1093/BIOINFORMATICS/BTR391},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DriscollGMDSFHBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Dugat-BonyMPBBGHP11,
author = {Eric Dugat{-}Bony and
Mohieddine Missaoui and
Eric Peyretaillade and
Corinne Biderre{-}Petit and
Ourdia Bouzid and
Christophe Gouinaud and
David R. C. Hill and
Pierre Peyret},
title = {HiSpOD: probe design for functional {DNA} microarrays},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {641--648},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq712},
doi = {10.1093/BIOINFORMATICS/BTQ712},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Dugat-BonyMPBBGHP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DurmeDSSSR11,
author = {Joost J. J. van Durme and
Javier Delgado Blanco and
Francois Stricher and
Luis Serrano and
Joost Schymkowitz and
Frederic Rousseau},
title = {A graphical interface for the FoldX forcefield},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1711--1712},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr254},
doi = {10.1093/BIOINFORMATICS/BTR254},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DurmeDSSSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DutilhJSHHSWFSSJCH11,
author = {Bas E. Dutilh and
Rasa Jurgelenaite and
Radek Szklarczyk and
Sacha A. F. T. van Hijum and
Harry R. Harhangi and
Markus Schmid and
Bart de Wild and
Kees{-}Jan Fran{\c{c}}oijs and
Henk Stunnenberg and
Marc Strous and
Mike S. M. Jetten and
Huub J. M. Op den Camp and
Martijn A. Huynen},
title = {{FACIL:} Fast and Accurate Genetic Code Inference and Logo},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1929--1933},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr316},
doi = {10.1093/BIOINFORMATICS/BTR316},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DutilhJSHHSWFSSJCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DwightPW11,
author = {Zachary Dwight and
Robert Palais and
Carl T. Wittwer},
title = {uMELT: prediction of high-resolution melting curves and dynamic melting
profiles of {PCR} products in a rich web application},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1019--1020},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr065},
doi = {10.1093/BIOINFORMATICS/BTR065},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DwightPW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EastmanPH11,
author = {Jonathan M. Eastman and
C. E. Timothy Paine and
Olivier J. Hardy},
title = {spacodiR: structuring of phylogenetic diversity in ecological communities},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2437--2438},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr403},
doi = {10.1093/BIOINFORMATICS/BTR403},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EastmanPH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EbinaTK11,
author = {Teppei Ebina and
Hiroyuki Toh and
Yutaka Kuroda},
title = {{DROP:} an {SVM} domain linker predictor trained with optimal features
selected by random forest},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {487--494},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq700},
doi = {10.1093/BIOINFORMATICS/BTQ700},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EbinaTK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdgarHCQK11,
author = {Robert C. Edgar and
Brian J. Haas and
Jos{\'{e}} Carlos Clemente and
Christopher Quince and
Rob Knight},
title = {{UCHIME} improves sensitivity and speed of chimera detection},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2194--2200},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr381},
doi = {10.1093/BIOINFORMATICS/BTR381},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdgarHCQK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdmonsonZYFMB11,
author = {Michael N. Edmonson and
Jinghui Zhang and
Chunhua Yan and
Richard P. Finney and
Daoud M. Meerzaman and
Kenneth H. Buetow},
title = {Bambino: a variant detector and alignment viewer for next-generation
sequencing data in the {SAM/BAM} format},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {865--866},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr032},
doi = {10.1093/BIOINFORMATICS/BTR032},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdmonsonZYFMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdwardsSL11,
author = {Todd L. Edwards and
Zhuo Song and
Chun Li},
title = {Enriching targeted sequencing experiments for rare disease alleles},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2112--2118},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr324},
doi = {10.1093/BIOINFORMATICS/BTR324},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdwardsSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EichbornBP11,
author = {Joachim von Eichborn and
Philip E. Bourne and
Robert Preissner},
title = {Cobweb: a Java applet for network exploration and visualisation},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1725--1726},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr195},
doi = {10.1093/BIOINFORMATICS/BTR195},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EichbornBP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EisslerHM11,
author = {Tilo Ei{\ss}ler and
Christopher P. Hodges and
Harald Meier},
title = {PTPan - overcoming memory limitations in oligonucleotide string matching
for primer/probe design},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2797--2805},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr483},
doi = {10.1093/BIOINFORMATICS/BTR483},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EisslerHM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElHefnawiHKSREAMS11,
author = {Mahmoud ElHefnawi and
Nafisa Hassan and
Mona Kamar and
Rania Siam and
Anna Lisa Remoli and
Iman El{-}Azab and
Osama Alaidi and
Giulia Marsili and
Marco Sgarbanti},
title = {The design of optimal therapeutic small interfering {RNA} molecules
targeting diverse strains of influenza {A} virus},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3364--3370},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr555},
doi = {10.1093/BIOINFORMATICS/BTR555},
timestamp = {Wed, 13 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElHefnawiHKSREAMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElefantAM11,
author = {Naama Elefant and
Yael Altuvia and
Hanah Margalit},
title = {A wide repertoire of miRNA binding sites: prediction and functional
implications},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3093--3101},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr534},
doi = {10.1093/BIOINFORMATICS/BTR534},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElefantAM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EleftherohorinouAWMCJCBFWF11,
author = {Hariklia Eleftherohorinou and
Johanna C. Andersson{-}Assarsson and
Robin G. Walters and
Julia S. El{-}Sayed Moustafa and
Lachlan J. M. Coin and
Peter Jacobson and
Lena M. S. Carlsson and
Alexandra I. F. Blakemore and
Philippe Froguel and
Andrew J. Walley and
Mario Falchi},
title = {famCNV: copy number variant association for quantitative traits in
families},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1873--1875},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr264},
doi = {10.1093/BIOINFORMATICS/BTR264},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EleftherohorinouAWMCJCBFWF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EllwangerBMS11,
author = {Daniel C. Ellwanger and
Florian A. B{\"{u}}ttner and
Hans{-}Werner Mewes and
Volker St{\"{u}}mpflen},
title = {The sufficient minimal set of miRNA seed types},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1346--1350},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr149},
doi = {10.1093/BIOINFORMATICS/BTR149},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EllwangerBMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EngreitzCMDMB11,
author = {Jesse M. Engreitz and
Rong Chen and
Alexander A. Morgan and
Joel Dudley and
Rohan Mallelwar and
Atul J. Butte},
title = {ProfileChaser: searching microarray repositories based on genome-wide
patterns of differential expression},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3317--3318},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr548},
doi = {10.1093/BIOINFORMATICS/BTR548},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EngreitzCMDMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ExcoffierF11,
author = {Laurent Excoffier and
Matthieu Foll},
title = {fastsimcoal: a continuous-time coalescent simulator of genomic diversity
under arbitrarily complex evolutionary scenarios},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1332--1334},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr124},
doi = {10.1093/BIOINFORMATICS/BTR124},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ExcoffierF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FaziusSS11,
author = {Eugen Fazius and
Vladimir Shelest and
Ekaterina Shelest},
title = {SiTaR: a novel tool for transcription factor binding site prediction},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2806--2811},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr492},
doi = {10.1093/BIOINFORMATICS/BTR492},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FaziusSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FejesKBJ11,
author = {Anthony P. Fejes and
Alireza Hadj Khodabakhshi and
Inan{\c{c}} Birol and
Steven J. M. Jones},
title = {Human variation database: an open-source database template for genomic
discovery},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1155--1156},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr100},
doi = {10.1093/BIOINFORMATICS/BTR100},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FejesKBJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FengSK11,
author = {Feng Feng and
Ana Paula Sales and
Thomas B. Kepler},
title = {A Bayesian approach for estimating calibration curves and unknown
concentrations in immunoassays},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {707--712},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq686},
doi = {10.1093/BIOINFORMATICS/BTQ686},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FengSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FernaldCDKA11,
author = {Guy Haskin Fernald and
Emidio Capriotti and
Roxana Daneshjou and
Konrad J. Karczewski and
Russ B. Altman},
title = {Genome Analysis},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1741--1748},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr295},
doi = {10.1093/BIOINFORMATICS/BTR295},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FernaldCDKA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FernaldCDKA11a,
author = {Guy Haskin Fernald and
Emidio Capriotti and
Roxana Daneshjou and
Konrad J. Karczewski and
Russ B. Altman},
title = {Bioinformatics challenges for personalized medicine},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2323},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr408},
doi = {10.1093/BIOINFORMATICS/BTR408},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FernaldCDKA11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerrariSBB11,
author = {Francesco Ferrari and
Aldo Solari and
Cristina Battaglia and
Silvio Bicciato},
title = {\emph{PREDA}: an R-package to identify regional variations in genomic
data},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2446--2447},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr404},
doi = {10.1093/BIOINFORMATICS/BTR404},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerrariSBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerrerSK11,
author = {Luciana Ferrer and
Alexander Glennon Shearer and
Peter D. Karp},
title = {Discovering novel subsystems using comparative genomics},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2478--2485},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr428},
doi = {10.1093/BIOINFORMATICS/BTR428},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerrerSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FijorekFWP11,
author = {Kamil Fijorek and
Damian Fijorek and
Barbara Wisniowska and
Sebastian Polak},
title = {BDTcomparator: a program for comparing binary classifiers},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3439--3440},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr574},
doi = {10.1093/BIOINFORMATICS/BTR574},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FijorekFWP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FitzgeraldLSCRCR11,
author = {Tomas W. Fitzgerald and
Lee D. Larcombe and
Solena Le Scouarnec and
Stephen Clayton and
Diana Rajan and
Nigel P. Carter and
Richard Redon},
title = {aCGH.Spline - an {R} package for aCGH dye bias normalization},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1195--1200},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr107},
doi = {10.1093/BIOINFORMATICS/BTR107},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FitzgeraldLSCRCR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FlemingT11,
author = {Ronan M. T. Fleming and
Ines Thiele},
title = {von Bertalanffy 1.0: a {COBRA} toolbox extension to thermodynamically
constrain metabolic models},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {142--143},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq607},
doi = {10.1093/BIOINFORMATICS/BTQ607},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FlemingT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FloresO11,
author = {Oscar Flores and
Modesto Orozco},
title = {nucleR: a package for non-parametric nucleosome positioning},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2149--2150},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr345},
doi = {10.1093/BIOINFORMATICS/BTR345},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FloresO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FlorisRLOMT11,
author = {Matteo Floris and
Domenico Raimondo and
Guido Leoni and
Massimiliano Orsini and
Paolo Marcatili and
Anna Tramontano},
title = {{MAISTAS:} a tool for automatic structural evaluation of alternative
splicing products},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1625--1629},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr198},
doi = {10.1093/BIOINFORMATICS/BTR198},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FlorisRLOMT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FonsecaBBBCCDFHKLLMSSTY11,
author = {Carissa G. Fonseca and
Michael Backhaus and
David A. Bluemke and
Randall Britten and
Jae Do Chung and
Brett R. Cowan and
Ivo D. Dinov and
J. Paul Finn and
Peter J. Hunter and
Alan H. Kadish and
Daniel C. Lee and
Joao A. C. Lima and
Pau Medrano{-}Gracia and
Kalyanam Shivkumar and
Avan Suinesiaputra and
Wenchao Tao and
Alistair A. Young},
title = {The Cardiac Atlas Project - an imaging database for computational
modeling and statistical atlases of the heart},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2288--2295},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr360},
doi = {10.1093/BIOINFORMATICS/BTR360},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FonsecaBBBCCDFHKLLMSSTY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FostierPDSDPV11,
author = {Jan Fostier and
Sebastian Proost and
Bart Dhoedt and
Yvan Saeys and
Piet Demeester and
Yves Van de Peer and
Klaas Vandepoele},
title = {A greedy, graph-based algorithm for the alignment of multiple homologous
gene lists},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {749--756},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr008},
doi = {10.1093/BIOINFORMATICS/BTR008},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FostierPDSDPV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FournierA11,
author = {David Fournier and
Miguel A. Andrade{-}Navarro},
title = {PDBpaint, a visualization webservice to tag protein structures with
sequence annotations},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2605--2606},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr419},
doi = {10.1093/BIOINFORMATICS/BTR419},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FournierA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FowlerAGF11,
author = {Douglas M. Fowler and
Carlos L. Araya and
Wayne Gerard and
Stanley Fields},
title = {Enrich: software for analysis of protein function by enrichment and
depletion of variants},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3430--3431},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr577},
doi = {10.1093/BIOINFORMATICS/BTR577},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FowlerAGF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoxHBS11,
author = {Andrew D. Fox and
Benjamin J. Hescott and
Anselm Blumer and
Donna K. Slonim},
title = {Connectedness of {PPI} network neighborhoods identifies regulatory
hub proteins},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1135--1142},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr099},
doi = {10.1093/BIOINFORMATICS/BTR099},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoxHBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FreudenbergSPSM11,
author = {Johannes M. Freudenberg and
Siva Sivaganesan and
Mukta Phatak and
Kaustubh Shinde and
Mario Medvedovic},
title = {Generalized random set framework for functional enrichment analysis
using primary genomics datasets},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {70--77},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq593},
doi = {10.1093/BIOINFORMATICS/BTQ593},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FreudenbergSPSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrohlichPT11,
author = {Holger Fr{\"{o}}hlich and
Paurush Praveen and
Achim Tresch},
title = {Fast and efficient dynamic nested effects models},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {238--244},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq631},
doi = {10.1093/BIOINFORMATICS/BTQ631},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrohlichPT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FurlotteKYE11,
author = {Nicholas A. Furlotte and
Hyun Min Kang and
Chun Ye and
Eleazar Eskin},
title = {Mixed-model coexpression: calculating gene coexpression while accounting
for expression heterogeneity},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {288--294},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr221},
doi = {10.1093/BIOINFORMATICS/BTR221},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FurlotteKYE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoFZZC11,
author = {Liyan Gao and
Zhide Fang and
Kui Zhang and
Degui Zhi and
Xiangqin Cui},
title = {Length bias correction for RNA-seq data in gene set analyses},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {662--669},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr005},
doi = {10.1093/BIOINFORMATICS/BTR005},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoFZZC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Garcia-AlcaldeGDC11,
author = {Fernando Garc{\'{\i}}a{-}Alcalde and
Federico Garc{\'{\i}}a{-}L{\'{o}}pez and
Joaqu{\'{\i}}n Dopazo and
Ana Conesa},
title = {Paintomics: a web based tool for the joint visualization of transcriptomics
and metabolomics data},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {137--139},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq594},
doi = {10.1093/BIOINFORMATICS/BTQ594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Garcia-AlcaldeGDC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GarlaKSK11,
author = {Vijay Garla and
Yong Kong and
Sebastian Szpakowski and
Michael Krauthammer},
title = {{MU2A} - reconciling the genome and transcriptome to determine the
effects of base substitutions},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {416--418},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq658},
doi = {10.1093/BIOINFORMATICS/BTQ658},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GarlaKSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GastonSR11,
author = {Daniel Gaston and
Edward Susko and
Andrew J. Roger},
title = {A phylogenetic mixture model for the identification of functionally
divergent protein residues},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2655--2663},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr470},
doi = {10.1093/BIOINFORMATICS/BTR470},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GastonSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GavranovicCST11,
author = {Haris Gavranovic and
C{\'{e}}dric Chauve and
J{\'{e}}r{\^{o}}me Salse and
Eric Tannier},
title = {Mapping ancestral genomes with massive gene loss: {A} matrix sandwich
problem},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {257--265},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr224},
doi = {10.1093/BIOINFORMATICS/BTR224},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GavranovicCST11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeLJFNH11,
author = {Huanying Ge and
Kejun Liu and
Todd Juan and
Fang Fang and
Matthew Newman and
Wolfgang Hoeck},
title = {FusionMap: detecting fusion genes from next-generation sequencing
data at base-pair resolution},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1922--1928},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr310},
doi = {10.1093/BIOINFORMATICS/BTR310},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeLJFNH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeRSHPHNCMDZSAG11,
author = {Dongliang Ge and
Elizabeth K. Ruzzo and
Kevin V. Shianna and
Min He and
Kimberly Pelak and
Erin L. Heinzen and
Anna C. Need and
Elizabeth T. Cirulli and
Jessica M. Maia and
Samuel P. Dickson and
Mingfu Zhu and
Abanish Singh and
Andrew S. Allen and
David B. Goldstein},
title = {{SVA:} software for annotating and visualizing sequenced human genomes},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1998--2000},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr317},
doi = {10.1093/BIOINFORMATICS/BTR317},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeRSHPHNCMDZSAG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeistlingerCKMZ11,
author = {Ludwig Geistlinger and
Gergely Csaba and
Robert K{\"{u}}ffner and
Nicola J. Mulder and
Ralf Zimmer},
title = {From sets to graphs: towards a realistic enrichment analysis of transcriptomic
systems},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {366--373},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr228},
doi = {10.1093/BIOINFORMATICS/BTR228},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeistlingerCKMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GellyB11,
author = {Jean{-}Christophe Gelly and
Alexandre G. de Brevern},
title = {Protein Peeling 3D: new tools for analyzing protein structures},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {132--133},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq610},
doi = {10.1093/BIOINFORMATICS/BTQ610},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GellyB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GevaS11,
author = {Guy Geva and
Roded Sharan},
title = {Identification of protein complexes from co-immunoprecipitation data},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {111--117},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq652},
doi = {10.1093/BIOINFORMATICS/BTQ652},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GevaS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GevorgyanBAK11,
author = {Albert Gevorgyan and
Michael E. Bushell and
Claudio Avignone{-}Rossa and
Andrzej M. Kierzek},
title = {SurreyFBA: a command line tool and graphics user interface for constraint-based
modeling of genome-scale metabolic reaction networks},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {433--434},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq679},
doi = {10.1093/BIOINFORMATICS/BTQ679},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GevorgyanBAK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhoorahDSR11,
author = {Anisah W. Ghoorah and
Marie{-}Dominique Devignes and
Malika Sma{\"{\i}}l{-}Tabbone and
David W. Ritchie},
title = {Spatial clustering of protein binding sites for template based protein
docking},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2820--2827},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr493},
doi = {10.1093/BIOINFORMATICS/BTR493},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhoorahDSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GibsonG11,
author = {Todd A. Gibson and
Debra Goldberg},
title = {Improving evolutionary models of protein interaction networks},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {376--382},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq623},
doi = {10.1093/BIOINFORMATICS/BTQ623},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GibsonG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GidskehaugKHL11,
author = {Lars Halvor Gidskehaug and
Matthew Kent and
Ben J. Hayes and
Sigbj{\o}rn Lien},
title = {Genotype calling and mapping of multisite variants using an Atlantic
salmon iSelect {SNP} array},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {303--310},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq673},
doi = {10.1093/BIOINFORMATICS/BTQ673},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GidskehaugKHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilleHHH11,
author = {Christoph Gille and
Katrin H{\"{u}}bner and
Andreas Hoppe and
Hermann{-}Georg Holzh{\"{u}}tter},
title = {Metannogen: annotation of biological reaction networks},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2763--2764},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr456},
doi = {10.1093/BIOINFORMATICS/BTR456},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GilleHHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GillisP11,
author = {Jesse A. Gillis and
Paul Pavlidis},
title = {The role of indirect connections in gene networks in predicting function},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1860--1866},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr288},
doi = {10.1093/BIOINFORMATICS/BTR288},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GillisP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GinolhacRGWO11,
author = {Aurelien Ginolhac and
Morten Rasmussen and
M. Thomas P. Gilbert and
Eske Willerslev and
Ludovic Orlando},
title = {mapDamage: testing for damage patterns in ancient {DNA} sequences},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2153--2155},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr347},
doi = {10.1093/BIOINFORMATICS/BTR347},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GinolhacRGWO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlusmanCMHR11,
author = {Gustavo Glusman and
Juan Caballero and
Denise E. Mauldin and
Leroy E. Hood and
Jared C. Roach},
title = {Kaviar: an accessible system for testing {SNV} novelty},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3216--3217},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr540},
doi = {10.1093/BIOINFORMATICS/BTR540},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlusmanCMHR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GolanR11,
author = {David Golan and
Saharon Rosset},
title = {Accurate estimation of heritability in genome wide studies using random
effects models},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {317--323},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr219},
doi = {10.1093/BIOINFORMATICS/BTR219},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GolanR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldenbergMQBM11,
author = {Anna Goldenberg and
Sara Mostafavi and
Gerald T. Quon and
Paul C. Boutros and
Quaid Morris},
title = {Unsupervised detection of genes of influence in lung cancer using
biological networks},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3166--3172},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr533},
doi = {10.1093/BIOINFORMATICS/BTR533},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldenbergMQBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoncalvesFMTSOM11,
author = {Joana P. Gon{\c{c}}alves and
Alexandre P. Francisco and
Nuno P. Mira and
Miguel C. Teixeira and
Isabel S{\'{a}}{-}Correia and
Arlindo L. Oliveira and
Sara C. Madeira},
title = {TFRank: network-based prioritization of regulatory associations underlying
transcriptional responses},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3149--3157},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr546},
doi = {10.1093/BIOINFORMATICS/BTR546},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoncalvesFMTSOM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoncalvesTBK11,
author = {{\^{A}}ngela Gon{\c{c}}alves and
Andrew Tikhonov and
Alvis Brazma and
Misha Kapushesky},
title = {A pipeline for RNA-seq data processing and quality assessment},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {867--869},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr012},
doi = {10.1093/BIOINFORMATICS/BTR012},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoncalvesTBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoncearencoB11,
author = {Alexander Goncearenco and
Igor N. Berezovsky},
title = {Computational reconstruction of primordial prototypes of elementary
functional loops in modern proteins},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2368--2375},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr396},
doi = {10.1093/BIOINFORMATICS/BTR396},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoncearencoB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GonzalezZ11,
author = {Orland R. Gonzalez and
Ralf Zimmer},
title = {Contextual analysis of RNAi-based functional screens using interaction
networks},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2707--2713},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr469},
doi = {10.1093/BIOINFORMATICS/BTR469},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GonzalezZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoriFJM11,
author = {Fabio Gori and
Gianluigi Folino and
Mike S. M. Jetten and
Elena Marchiori},
title = {{MTR:} taxonomic annotation of short metagenomic reads using clustering
at multiple taxonomic ranks},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {196--203},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq649},
doi = {10.1093/BIOINFORMATICS/BTQ649},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoriFJM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GostevFRDPRMBK11,
author = {Mikhail Gostev and
Julio Fernandez{-}Banet and
Johan Rung and
Joern Dietrich and
Inga Prokopenko and
Samuli Ripatti and
Mark I. McCarthy and
Alvis Brazma and
Maria Krestyaninova},
title = {{SAIL} - a software system for sample and phenotype availability across
biobanks and cohorts},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {589--591},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq693},
doi = {10.1093/BIOINFORMATICS/BTQ693},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GostevFRDPRMBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GottliebMBRS11,
author = {Assaf Gottlieb and
Oded Magger and
Igor Berman and
Eytan Ruppin and
Roded Sharan},
title = {{PRINCIPLE:} a tool for associating genes with diseases via network
propagation},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3325--3326},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr584},
doi = {10.1093/BIOINFORMATICS/BTR584},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GottliebMBRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GotzASMTJDRC11,
author = {Stefan G{\"{o}}tz and
Roland Arnold and
Patricia Sebasti{\'{a}}n{-}Le{\'{o}}n and
Samuel Mart{\'{\i}}n{-}Rodr{\'{\i}}guez and
Patrick Tischler and
Marc{-}Andr{\'{e}} Jehl and
Joaqu{\'{\i}}n Dopazo and
Thomas Rattei and
Ana Conesa},
title = {B2G-FAR, a species-centered {GO} annotation repository},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {919--924},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr059},
doi = {10.1093/BIOINFORMATICS/BTR059},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GotzASMTJDRC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrantALS11,
author = {Jason R. Grant and
Adriano S. Arantes and
Xiaoping Liao and
Paul Stothard},
title = {In-depth annotation of SNPs arising from resequencing projects using
{NGS-SNP}},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2300--2301},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr372},
doi = {10.1093/BIOINFORMATICS/BTR372},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrantALS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrantBN11,
author = {Charles E. Grant and
Timothy L. Bailey and
William Stafford Noble},
title = {{FIMO:} scanning for occurrences of a given motif},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1017--1018},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr064},
doi = {10.1093/BIOINFORMATICS/BTR064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrantBN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrantFPLSBSHP11,
author = {Gregory R. Grant and
Michael H. Farkas and
Angel D. Pizarro and
Nicholas F. Lahens and
Jonathan Schug and
Brian P. Brunk and
Christian J. Stoeckert Jr. and
John B. Hogenesch and
Eric A. Pierce},
title = {Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq
unified mapper {(RUM)}},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2518--2528},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr427},
doi = {10.1093/BIOINFORMATICS/BTR427},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrantFPLSBSHP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GruningSEFG11,
author = {Bj{\"{o}}rn A. Gr{\"{u}}ning and
Christian Senger and
Anika Erxleben and
Stephan Flemming and
Stefan G{\"{u}}nther},
title = {Compounds In Literature {(CIL):} screening for compounds and relatives
in PubMed},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1341--1342},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr130},
doi = {10.1093/BIOINFORMATICS/BTR130},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GruningSEFG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrzegorczykH11,
author = {Marco Grzegorczyk and
Dirk Husmeier},
title = {Improvements in the reconstruction of time-varying gene regulatory
networks: dynamic programming and regularization by information sharing
among genes},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {693--699},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq711},
doi = {10.1093/BIOINFORMATICS/BTQ711},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrzegorczykH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GulsoyK11,
author = {G{\"{u}}nhan G{\"{u}}lsoy and
Tamer Kahveci},
title = {{RINQ:} Reference-based Indexing for Network Queries},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {149--158},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr203},
doi = {10.1093/BIOINFORMATICS/BTR203},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GulsoyK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoKSS11,
author = {Yufan Guo and
Anna Korhonen and
Ilona Silins and
Ulla Stenius},
title = {Weakly supervised learning of information structure of scientific
abstracts - is it accurate enough to benefit real-world tasks in biomedicine?},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3179--3185},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr536},
doi = {10.1093/BIOINFORMATICS/BTR536},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoKSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HabeggerSGRASG11,
author = {Lukas Habegger and
Andrea Sboner and
Tara A. Gianoulis and
Joel S. Rozowsky and
Ashish Agarwal and
Michael Snyder and
Mark Gerstein},
title = {RSEQtools: a modular framework to analyze RNA-Seq data using compact,
anonymized data summaries},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {281--283},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq643},
doi = {10.1093/BIOINFORMATICS/BTQ643},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HabeggerSGRASG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaeusslerGB11,
author = {Maximilian Haeussler and
Martin Gerner and
Casey M. Bergman},
title = {Annotating genes and genomes with {DNA} sequences extracted from biomedical
articles},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {980--986},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr043},
doi = {10.1093/BIOINFORMATICS/BTR043},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaeusslerGB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafemeisterCSS11,
author = {Christoph Hafemeister and
Ivan G. Costa and
Alexander Sch{\"{o}}nhuth and
Alexander Schliep},
title = {Classifying short gene expression time-courses with Bayesian estimation
of piecewise constant functions},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {946--952},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr037},
doi = {10.1093/BIOINFORMATICS/BTR037},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HafemeisterCSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakenbergGHSPSGNB11,
author = {J{\"{o}}rg Hakenberg and
Martin Gerner and
Maximilian Haeussler and
Ill{\'{e}}s Solt and
Conrad Plake and
Michael Schroeder and
Graciela Gonzalez and
Goran Nenadic and
Casey M. Bergman},
title = {The {GNAT} library for local and remote gene mention normalization},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2769--2771},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr455},
doi = {10.1093/BIOINFORMATICS/BTR455},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakenbergGHSPSGNB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Halper-StrombergFRSJCHHJDDSBPSI11,
author = {Eitan Halper{-}Stromberg and
Laurence Frelin and
Ingo Ruczinski and
Robert B. Scharpf and
Chunfa Jie and
Benilton S. Carvalho and
Haiping Hao and
Kurt N. Hetrick and
Anne Jedlicka and
Amanda Dziedzic and
Kim Doheny and
Alan F. Scott and
Steve Baylin and
Jonathan Pevsner and
Forrest Spencer and
Rafael A. Irizarry},
title = {Performance assessment of copy number microarray platforms using a
spike-in experiment},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1052--1060},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr106},
doi = {10.1093/BIOINFORMATICS/BTR106},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Halper-StrombergFRSJCHHJDDSBPSI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaWFA11,
author = {Michiaki Hamada and
Edward Wijaya and
Martin C. Frith and
Kiyoshi Asai},
title = {Probabilistic alignments with quality scores: an application to short-read
mapping toward accurate SNP/indel detection},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3085--3092},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr537},
doi = {10.1093/BIOINFORMATICS/BTR537},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaWFA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HampBBK11,
author = {Tobias Hamp and
Fabian Birzele and
Fabian Buchwald and
Stefan Kramer},
title = {Improving structure alignment-based prediction of {SCOP} families
using Vorolign Kernels},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {204--210},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq618},
doi = {10.1093/BIOINFORMATICS/BTQ618},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HampBBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanHB11,
author = {Liangxiu Han and
Jano I. van Hemert and
Richard A. Baldock},
title = {Automatically identifying and annotating mouse embryo gene expression
patterns},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1101--1107},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr105},
doi = {10.1093/BIOINFORMATICS/BTR105},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanHB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoJC11,
author = {Xiaolin Hao and
Rui Jiang and
Ting Chen},
title = {Clustering 16S rRNA for {OTU} prediction: a method of unsupervised
Bayesian clustering},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {611--618},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq725},
doi = {10.1093/BIOINFORMATICS/BTQ725},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoJC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoMVPTRTGW11,
author = {Yanqi Hao and
Anna Merkoulovitch and
James Vlasblom and
Shuye Pu and
Andrei L. Turinsky and
Denitza Roudeva and
Brian Turner and
Jack Greenblatt and
Shoshana J. Wodak},
title = {OrthoNets: simultaneous visual analysis of orthologs and their interaction
neighborhoods across different organisms},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {883--884},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr035},
doi = {10.1093/BIOINFORMATICS/BTR035},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoMVPTRTGW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HartlerTCSKT11,
author = {J{\"{u}}rgen Hartler and
Martin Tr{\"{o}}tzm{\"{u}}ller and
Chandramohan Chitraju and
Friedrich Spener and
Harald C. K{\"{o}}feler and
Gerhard G. Thallinger},
title = {Lipid Data Analyzer: unattended identification and quantitation of
lipids in {LC-MS} data},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {572--577},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq699},
doi = {10.1093/BIOINFORMATICS/BTQ699},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HartlerTCSKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HauboldRP11,
author = {Bernhard Haubold and
Floyd A. Reed and
Peter Pfaffelhuber},
title = {Alignment-free estimation of nucleotide diversity},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {449--455},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq689},
doi = {10.1093/BIOINFORMATICS/BTQ689},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HauboldRP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HawkinsDPDMMC11,
author = {Troy B. Hawkins and
Jessica Dantzer and
Brandon Peters and
Mary Dinauer and
Keithanne Mockaitis and
Sean D. Mooney and
Kenneth Cornetta},
title = {Identifying viral integration sites using SeqMap 2.0},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {720--722},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq722},
doi = {10.1093/BIOINFORMATICS/BTQ722},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HawkinsDPDMMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayesKSLRPC11,
author = {Catherine A. Hayes and
Niclas G. Karlsson and
Weston B. Struwe and
Fr{\'{e}}d{\'{e}}rique Lisacek and
Pauline M. Rudd and
Nicolle H. Packer and
Matthew P. Campbell},
title = {UniCarb-DB: a database resource for glycomic discovery},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1343--1344},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr137},
doi = {10.1093/BIOINFORMATICS/BTR137},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayesKSLRPC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HazelhurstL11,
author = {Scott Hazelhurst and
Zsuzsanna Lipt{\'{a}}k},
title = {KABOOM! {A} new suffix array based algorithm for clustering expression
data},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3348--3355},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr560},
doi = {10.1093/BIOINFORMATICS/BTR560},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HazelhurstL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeHFE11,
author = {Dan He and
Farhad Hormozdiari and
Nicholas A. Furlotte and
Eleazar Eskin},
title = {Efficient algorithms for tandem copy number variation reconstruction
in repeat-rich regions},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1513--1520},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr169},
doi = {10.1093/BIOINFORMATICS/BTR169},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeHFE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeL11,
author = {Qianchuan He and
Dan{-}Yu Lin},
title = {A variable selection method for genome-wide association studies},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {1--8},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq600},
doi = {10.1093/BIOINFORMATICS/BTQ600},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeeringenV11,
author = {Simon J. van Heeringen and
Gert Jan C. Veenstra},
title = {GimmeMotifs: a \emph{de novo} motif prediction pipeline for ChIP-sequencing
experiments},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {270--271},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq636},
doi = {10.1093/BIOINFORMATICS/BTQ636},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeeringenV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeikkinenKW11,
author = {Liisa Heikkinen and
Mikko Kolehmainen and
Garry Wong},
title = {Prediction of microRNA targets in \emph{Caenorhabditis elegans} using
a self-organizing map},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1247--1254},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr144},
doi = {10.1093/BIOINFORMATICS/BTR144},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeikkinenKW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HemaniTWH11,
author = {Gibran Hemani and
Athanasios Theocharidis and
Wenhua Wei and
Chris S. Haley},
title = {EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer
level graphics cards},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1462--1465},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr172},
doi = {10.1093/BIOINFORMATICS/BTR172},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HemaniTWH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HennerdalE11,
author = {Aron Hennerdal and
Arne Elofsson},
title = {Rapid membrane protein topology prediction},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1322--1323},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr119},
doi = {10.1093/BIOINFORMATICS/BTR119},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HennerdalE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HillKSD11,
author = {Jamie R. Hill and
Sebastian Kelm and
Jiye Shi and
Charlotte M. Deane},
title = {Environment specific substitution tables improve membrane protein
alignment},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {15--23},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr230},
doi = {10.1093/BIOINFORMATICS/BTR230},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HillKSD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoehndorfDOWRSG11,
author = {Robert Hoehndorf and
Michel Dumontier and
Anika Oellrich and
Sarala M. Wimalaratne and
Dietrich Rebholz{-}Schuhmann and
Paul N. Schofield and
Georgios V. Gkoutos},
title = {A common layer of interoperability for biomedical ontologies based
on {OWL} {EL}},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1001--1008},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr058},
doi = {10.1093/BIOINFORMATICS/BTR058},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoehndorfDOWRSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HonkelaGRRL11,
author = {Antti Honkela and
Pei Gao and
Jonatan Ropponen and
Magnus Rattray and
Neil D. Lawrence},
title = {tigre: Transcription factor inference through gaussian process reconstruction
of expression for bioconductor},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1026--1027},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr057},
doi = {10.1093/BIOINFORMATICS/BTR057},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HonkelaGRRL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HormozdiariHSEA11,
author = {Farhad Hormozdiari and
Faraz Hach and
S{\"{u}}leyman Cenk Sahinalp and
Evan E. Eichler and
Can Alkan},
title = {Sensitive and fast mapping of di-base encoded reads},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1915--1921},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr303},
doi = {10.1093/BIOINFORMATICS/BTR303},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HormozdiariHSEA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HouLW11,
author = {Tingjun Hou and
Youyong Li and
Wei Wang},
title = {Prediction of peptides binding to the {PKA} RII{\(\alpha\)} subunit
using a hierarchical strategy},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1814--1821},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr294},
doi = {10.1093/BIOINFORMATICS/BTR294},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HouWQLTZDL11,
author = {Lin Hou and
Lin Wang and
Minping Qian and
Dong Li and
Chao Tang and
Yunping Zhu and
Minghua Deng and
Fangting Li},
title = {Modular analysis of the probabilistic genetic interaction network},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {853--859},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr031},
doi = {10.1093/BIOINFORMATICS/BTR031},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouWQLTZDL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HouYAJ11,
author = {Minmei Hou and
Ping Yao and
Angela Antonou and
Mitrick A. Johns},
title = {Pico-inplace-inversions between human and chimpanzee},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3266--3275},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr566},
doi = {10.1093/BIOINFORMATICS/BTR566},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouYAJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoweSSQ11,
author = {Eleanor Howe and
Raktim Sinha and
Daniel Schlauch and
John Quackenbush},
title = {RNA-Seq analysis in MeV},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3209--3210},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr490},
doi = {10.1093/BIOINFORMATICS/BTR490},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoweSSQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuDHCL11,
author = {Qian{-}Nan Hu and
Zhe Deng and
Huanan Hu and
Dong{-}Sheng Cao and
Yi{-}Zeng Liang},
title = {RxnFinder: biochemical reaction search engines using molecular structures,
molecular fragments and reaction similarity},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2465--2467},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr413},
doi = {10.1093/BIOINFORMATICS/BTR413},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuDHCL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangAC11,
author = {Y. Wayne Huang and
Adam P. Arkin and
John{-}Marc Chandonia},
title = {{WIST:} toolkit for rapid, customized {LIMS} development},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {437--438},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq676},
doi = {10.1093/BIOINFORMATICS/BTQ676},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangAC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangG11,
author = {Bevan Emma Huang and
Andrew W. George},
title = {R/mpMap: a computational platform for the genetic analysis of multiparent
recombinant inbred lines},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {727--729},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq719},
doi = {10.1093/BIOINFORMATICS/BTQ719},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangHBCHKC11,
author = {Donglin Huang and
Yiling Huang and
Youhuang Bai and
Dijun Chen and
Ralf Hofest{\"{a}}dt and
Christian Klukas and
Ming Chen},
title = {MyBioNet: interactively visualize, edit and merge biological networks
on the Web},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3321--3322},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr557},
doi = {10.1093/BIOINFORMATICS/BTR557},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangHBCHKC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangJO11,
author = {Jie Huang and
Andrew D. Johnson and
Christopher J. O'Donnell},
title = {PRIMe: a method for characterization and evaluation of pleiotropic
regions from multiple genome-wide association studies},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1201--1206},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr116},
doi = {10.1093/BIOINFORMATICS/BTR116},
timestamp = {Wed, 25 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangJO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangLZ11,
author = {Minlie Huang and
Jingchen Liu and
Xiaoyan Zhu},
title = {GeneTUKit: a software for document-level gene normalization},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1032--1033},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr042},
doi = {10.1093/BIOINFORMATICS/BTR042},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangLZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangLZYH11,
author = {Jialiang Huang and
Yi Liu and
Wei Zhang and
Hong Yu and
Jing{-}Dong J. Han},
title = {eResponseNet: a package prioritizing candidate disease genes through
cellular pathways},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2319--2320},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr380},
doi = {10.1093/BIOINFORMATICS/BTR380},
timestamp = {Sun, 22 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangLZYH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangMSMZCW11,
author = {Hongzhan Huang and
Peter B. McGarvey and
Baris E. Suzek and
Raja Mazumder and
Jian Zhang and
Yongxing Chen and
Cathy H. Wu},
title = {A comprehensive protein-centric {ID} mapping service for molecular
data integration},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1190--1191},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr101},
doi = {10.1093/BIOINFORMATICS/BTR101},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangMSMZCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangWZ11,
author = {Qiang Huang and
Ling{-}Yun Wu and
Xiang{-}Sun Zhang},
title = {An efficient network querying method based on conditional random fields},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3173--3178},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr524},
doi = {10.1093/BIOINFORMATICS/BTR524},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangWZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Huerta-CepasG11,
author = {Jaime Huerta{-}Cepas and
Toni Gabald{\'{o}}n},
title = {Assigning duplication events to relative temporal scales in genome-wide
studies},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {38--45},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq609},
doi = {10.1093/BIOINFORMATICS/BTQ609},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Huerta-CepasG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HugginsZSBLPSSB11,
author = {Peter Huggins and
Shan Zhong and
Idit Shiff and
Rachel Beckerman and
Oleg Laptenko and
Carol Prives and
Marcel H. Schulz and
Itamar Simon and
Ziv Bar{-}Joseph},
title = {{DECOD:} fast and accurate discriminative {DNA} motif finding},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2361--2367},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr412},
doi = {10.1093/BIOINFORMATICS/BTR412},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HugginsZSBLPSSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HummelBLR11,
author = {Manuela Hummel and
Sarah Bonnin and
Ernesto Lowy{-}Gallego and
Guglielmo Roma},
title = {{TEQC:} an {R} package for quality control in target capture experiments},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1316--1317},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr122},
doi = {10.1093/BIOINFORMATICS/BTR122},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HummelBLR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HwangZXLK11,
author = {TaeHyun Hwang and
Wei Zhang and
Maoqiang Xie and
Jinfeng Liu and
Rui Kuang},
title = {Inferring disease and gene set associations with rank coherence in
networks},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2692--2699},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr463},
doi = {10.1093/BIOINFORMATICS/BTR463},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HwangZXLK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IlieFI11,
author = {Lucian Ilie and
Farideh Fazayeli and
Silvana Ilie},
title = {HiTEC: accurate error correction in high-throughput sequencing data},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {295--302},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq653},
doi = {10.1093/BIOINFORMATICS/BTQ653},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IlieFI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IlieIB11,
author = {Lucian Ilie and
Silvana Ilie and
Anahita Mansouri Bigvand},
title = {SpEED: fast computation of sensitive spaced seeds},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2433--2434},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr368},
doi = {10.1093/BIOINFORMATICS/BTR368},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IlieIB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IngsriswangYW11,
author = {Supawadee Ingsriswang and
Sunai Yokwai and
Duangdao Wichadakul},
title = {LinkinPath: from sequence to interconnected pathway},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2015--2017},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr328},
doi = {10.1093/BIOINFORMATICS/BTR328},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IngsriswangYW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IsakovMS11,
author = {Ofer Isakov and
Shira Modai and
Noam Shomron},
title = {Pathogen detection using short-RNA deep sequencing subtraction and
assembly},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2027--2030},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr349},
doi = {10.1093/BIOINFORMATICS/BTR349},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IsakovMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IsciOJO11,
author = {Senol Isci and
Cengizhan Ozturk and
Jon Jones and
Hasan H. Otu},
title = {Pathway analysis of high-throughput biological data within a Bayesian
network framework},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1667--1674},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr269},
doi = {10.1093/BIOINFORMATICS/BTR269},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IsciOJO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IvanG11,
author = {G{\'{a}}bor Iv{\'{a}}n and
Vince Grolmusz},
title = {When the Web meets the cell: using personalized PageRank for analyzing
protein interaction networks},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {405--407},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq680},
doi = {10.1093/BIOINFORMATICS/BTQ680},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IvanG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IvchenkoYSWMH11,
author = {Olga Ivchenko and
Erfan Younesi and
Mohammad Shahid and
Antje Wolf and
Bernd M{\"{u}}ller and
Martin Hofmann{-}Apitius},
title = {{PLIO:} an ontology for formal description of protein-ligand interactions},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1684--1690},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr256},
doi = {10.1093/BIOINFORMATICS/BTR256},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IvchenkoYSWMH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IyerCM11,
author = {Matthew K. Iyer and
Arul M. Chinnaiyan and
Christopher A. Maher},
title = {ChimeraScan: a tool for identifying chimeric transcription in sequencing
data},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2903--2904},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr467},
doi = {10.1093/BIOINFORMATICS/BTR467},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IyerCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JacksonGMK11,
author = {Charles Jackson and
Estelle Glory{-}Afshar and
Robert F. Murphy and
Jelena Kovacevic},
title = {Model building and intelligent acquisition with application to protein
subcellular location classification},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1854--1859},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr286},
doi = {10.1093/BIOINFORMATICS/BTR286},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JacksonGMK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JaglaWC11,
author = {Bernd Jagla and
Bernd Wiswedel and
Jean{-}Yves Copp{\'{e}}e},
title = {Extending {KNIME} for next-generation sequencing data analysis},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2907--2909},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr478},
doi = {10.1093/BIOINFORMATICS/BTR478},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JaglaWC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JavedPMUBCP11,
author = {Asif Javed and
Marc Pybus and
Marta Mel{\'{e}} and
Filippo Utro and
Jaume Bertranpetit and
Francesc Calafell and
Laxmi Parida},
title = {IRiS: Construction of {ARG} networks at genomic scales},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2448--2450},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr423},
doi = {10.1093/BIOINFORMATICS/BTR423},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JavedPMUBCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeeRYLBZZFWWG11,
author = {Justin Jee and
Joel S. Rozowsky and
Kevin Y. Yip and
Lucas Lochovsky and
Robert D. Bjornson and
Guoneng Zhong and
Zhengdong D. Zhang and
Yutao Fu and
Jie Wang and
Zhiping Weng and
Mark Gerstein},
title = {{ACT:} aggregation and correlation toolbox for analyses of genome
tracks},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1152--1154},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr092},
doi = {10.1093/BIOINFORMATICS/BTR092},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeeRYLBZZFWWG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JefferysG11,
author = {Stuart R. Jefferys and
Morgan C. Giddings},
title = {Baking a mass-spectrometry data {PIE} with McMC and simulated annealing:
predicting protein post-translational modifications from integrated
top-down and bottom-up data},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {844--852},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr027},
doi = {10.1093/BIOINFORMATICS/BTR027},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JefferysG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JensenB11,
author = {Lars Juhl Jensen and
Alex Bateman},
title = {The rise and fall of supervised machine learning techniques},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3331--3332},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr585},
doi = {10.1093/BIOINFORMATICS/BTR585},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JensenB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JensenP11,
author = {Paul A. Jensen and
Jason A. Papin},
title = {Functional integration of a metabolic network model and expression
data without arbitrary thresholding},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {541--547},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq702},
doi = {10.1093/BIOINFORMATICS/BTQ702},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JensenP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeongNISSM11,
author = {Euna Jeong and
Masao Nagasaki and
Emi Ikeda and
Yayoi Sekiya and
Ayumu Saito and
Satoru Miyano},
title = {{CSO} validator: improving manual curation workflow for biological
pathways},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2471--2472},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr395},
doi = {10.1093/BIOINFORMATICS/BTR395},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeongNISSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ji11,
author = {Shuiwang Ji},
title = {Computational network analysis of the anatomical and genetic organizations
in the mouse brain},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3293--3299},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr558},
doi = {10.1093/BIOINFORMATICS/BTR558},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ji11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiSLSB11,
author = {Rui{-}Ru Ji and
Nathan O. Siemers and
Ming Lei and
Liang Schweizer and
Robert E. Bruccoleri},
title = {{SDRS} - an algorithm for analyzing large-scale dose-response data},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2921--2923},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr489},
doi = {10.1093/BIOINFORMATICS/BTR489},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiSLSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaSG11,
author = {Gengjie Jia and
Gregory Stephanopoulos and
Rudiyanto Gunawan},
title = {Parameter estimation of kinetic models from metabolic profiles: two-phase
dynamic decoupling method},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1964--1970},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr293},
doi = {10.1093/BIOINFORMATICS/BTR293},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiaSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaZLZZ11,
author = {Peilin Jia and
Siyuan Zheng and
Jirong Long and
Wei Zheng and
Zhongming Zhao},
title = {dmGWAS: dense module searching for genome-wide association studies
in protein-protein interaction networks},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {95--102},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq615},
doi = {10.1093/BIOINFORMATICS/BTQ615},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiaZLZZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangZZ11,
author = {Haitao Jiang and
Binhai Zhu and
Daming Zhu},
title = {Algorithms for sorting unsigned linear genomes by the {DCJ} operations},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {311--316},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq674},
doi = {10.1093/BIOINFORMATICS/BTQ674},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangZZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JilineMT11,
author = {Mikhail Jiline and
Stan Matwin and
Marcel Turcotte},
title = {Annotation concept synthesis and enrichment analysis: a logic-based
approach to the interpretation of high-throughput experiments},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2391--2398},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr337},
doi = {10.1093/BIOINFORMATICS/BTR337},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JilineMT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinZZW11,
author = {Guangxu Jin and
Hong Zhao and
Xiaobo Zhou and
Stephen T. C. Wong},
title = {An enhanced Petri-net model to predict synergistic effects of pairwise
drug combinations from gene microarray data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {310--316},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr202},
doi = {10.1093/BIOINFORMATICS/BTR202},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JinZZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JohannesFSB11,
author = {Marc Johannes and
Holger Fr{\"{o}}hlich and
Holger S{\"{u}}ltmann and
Tim Bei{\ss}barth},
title = {pathClass: an R-package for integration of pathway knowledge into
support vector machines for biomarker discovery},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1442--1443},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr157},
doi = {10.1093/BIOINFORMATICS/BTR157},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JohannesFSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JombartA11,
author = {Thibaut Jombart and
Isma{\"{\i}}l Ahmed},
title = {\emph{adegenet 1.3-1}: new tools for the analysis of genome-wide {SNP}
data},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3070--3071},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr521},
doi = {10.1093/BIOINFORMATICS/BTR521},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JombartA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JoostenJCVP11,
author = {Robbie P. Joosten and
Krista Joosten and
Serge X. Cohen and
Gert Vriend and
Anastassis Perrakis},
title = {Automatic rebuilding and optimization of crystallographic structures
in the Protein Data Bank},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3392--3398},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr590},
doi = {10.1093/BIOINFORMATICS/BTR590},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JoostenJCVP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungBBB11,
author = {Klaus Jung and
Benjamin Becker and
Edgar Brunner and
Tim Bei{\ss}barth},
title = {Comparison of global tests for functional gene sets in two-group designs
and selection of potentially effect-causing genes},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1377--1383},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr152},
doi = {10.1093/BIOINFORMATICS/BTR152},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungBBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KahramanMA11,
author = {Abdullah Kahraman and
Lars Malmstr{\"{o}}m and
Ruedi Aebersold},
title = {Xwalk: computing and visualizing distances in cross-linking experiments},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2163--2164},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr348},
doi = {10.1093/BIOINFORMATICS/BTR348},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KahramanMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalevH11,
author = {Ivan Kalev and
Michael Habeck},
title = {HHfrag: HMM-based fragment detection using HHpred},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3110--3116},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr541},
doi = {10.1093/BIOINFORMATICS/BTR541},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalevH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalinkaT11,
author = {Alex T. Kalinka and
Pavel Tomancak},
title = {linkcomm: an {R} package for the generation, visualization, and analysis
of link communities in networks of arbitrary size and type},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2011--2012},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr311},
doi = {10.1093/BIOINFORMATICS/BTR311},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalinkaT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KallioniemiWV11,
author = {Olli{-}P. Kallioniemi and
Lodewyk F. A. Wessels and
Alfonso Valencia},
title = {On the organization of bioinformatics core services in biology-based
research institutes},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1345},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr125},
doi = {10.1093/BIOINFORMATICS/BTR125},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KallioniemiWV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalyanaramanCLB11,
author = {Ananth Kalyanaraman and
William R. Cannon and
Benjamin Latt and
Douglas J. Baxter},
title = {MapReduce implementation of a hybrid spectral library-database search
method for large-scale peptide identification},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3072--3073},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr523},
doi = {10.1093/BIOINFORMATICS/BTR523},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalyanaramanCLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kam-ThongPKMB11,
author = {Tony Kam{-}Thong and
Benno P{\"{u}}tz and
Nazanin Karbalai and
Bertram M{\"{u}}ller{-}Myhsok and
Karsten M. Borgwardt},
title = {Epistasis detection on quantitative phenotypes by exhaustive enumeration
using GPUs},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {214--221},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr218},
doi = {10.1093/BIOINFORMATICS/BTR218},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kam-ThongPKMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KamburovCEHK11,
author = {Atanas Kamburov and
Rachel Cavill and
Timothy M. D. Ebbels and
Ralf Herwig and
Hector C. Keun},
title = {Integrated pathway-level analysis of transcriptomics and metabolomics
data with IMPaLA},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2917--2918},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr499},
doi = {10.1093/BIOINFORMATICS/BTR499},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KamburovCEHK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KamentskyJFBLMLREC11,
author = {Lee Kamentsky and
Thouis R. Jones and
Adam Fraser and
Mark{-}Anthony Bray and
David J. Logan and
Katherine L. Madden and
Vebjorn Ljosa and
Curtis Rueden and
Kevin W. Eliceiri and
Anne E. Carpenter},
title = {Improved structure, function and compatibility for CellProfiler: modular
high-throughput image analysis software},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1179--1180},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr095},
doi = {10.1093/BIOINFORMATICS/BTR095},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KamentskyJFBLMLREC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KankainenGHO11,
author = {Matti Kankainen and
Peddinti V. Gopalacharyulu and
Liisa Holm and
Matej Oresic},
title = {{MPEA} - metabolite pathway enrichment analysis},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1878--1879},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr278},
doi = {10.1093/BIOINFORMATICS/BTR278},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KankainenGHO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KehrBST11,
author = {Stephanie Kehr and
Sebastian Bartschat and
Peter F. Stadler and
Hakim Tafer},
title = {{PLEXY:} efficient target prediction for box {C/D} snoRNAs},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {279--280},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq642},
doi = {10.1093/BIOINFORMATICS/BTQ642},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KehrBST11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KellerKSW11,
author = {Oliver Keller and
Martin Kollmar and
Mario Stanke and
Stephan Waack},
title = {A novel hybrid gene prediction method employing protein multiple sequence
alignments},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {757--763},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr010},
doi = {10.1093/BIOINFORMATICS/BTR010},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KellerKSW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KemenaTKN11,
author = {Carsten Kemena and
Jean{-}Fran{\c{c}}ois Taly and
Jens Kleinjung and
C{\'{e}}dric Notredame},
title = {{STRIKE:} evaluation of protein MSAs using a single 3D structure},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3385--3391},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr587},
doi = {10.1093/BIOINFORMATICS/BTR587},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KemenaTKN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanCTR11,
author = {Javed Mohammed Khan and
Harish Reddy Cheruku and
Joo Chuan Tong and
Shoba Ranganathan},
title = {{MPID-T2:} a database for sequence-structure-function analyses of
pMHC and TR/pMHC structures},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1192--1193},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr104},
doi = {10.1093/BIOINFORMATICS/BTR104},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanCTR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KiferNW11,
author = {Ilona Kifer and
Ruth Nussinov and
Haim J. Wolfson},
title = {{GOSSIP:} a method for fast and accurate global alignment of protein
structures},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {925--932},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr044},
doi = {10.1093/BIOINFORMATICS/BTR044},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KiferNW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimBHB11,
author = {Yoona Kim and
Steven Bark and
Vivian Hook and
Nuno Bandeira},
title = {NeuroPedia: neuropeptide database and spectral library},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2772--2773},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr445},
doi = {10.1093/BIOINFORMATICS/BTR445},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimBHB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimFWJZ11,
author = {Seongho Kim and
Aiqin Fang and
Bing Wang and
Jaesik Jeong and
Xiang Zhang},
title = {An optimal peak alignment for comprehensive two-dimensional gas chromatography
mass spectrometry using mixture similarity measure},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1660--1666},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr188},
doi = {10.1093/BIOINFORMATICS/BTR188},
timestamp = {Mon, 30 Mar 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimFWJZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimH11,
author = {Dong Seon Kim and
Yoonsoo Hahn},
title = {Identification of human-specific transcript variants induced by {DNA}
insertions in the human genome},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {14--21},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq612},
doi = {10.1093/BIOINFORMATICS/BTQ612},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimH11a,
author = {Dong Seon Kim and
Yoonsoo Hahn},
title = {Identification of novel phosphorylation modification sites in human
proteins that originated after the human-chimpanzee divergence},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2494--2501},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr426},
doi = {10.1093/BIOINFORMATICS/BTR426},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimH11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKHC11,
author = {Tae{-}Hwan Kim and
Junil Kim and
Pat Heslop{-}Harrison and
Kwang{-}Hyun Cho},
title = {Evolutionary design principles and functional characteristics based
on kingdom-specific network motifs},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {245--251},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq633},
doi = {10.1093/BIOINFORMATICS/BTQ633},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKHC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKK11,
author = {Kangseok Kim and
Wonil Kim and
Sunshin Kim},
title = {ReMark: an automatic program for clustering orthologs flexibly combining
a Recursive and a Markov clustering algorithms},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1731--1733},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr259},
doi = {10.1093/BIOINFORMATICS/BTR259},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKKYYLCHCH11,
author = {Yongsoo Kim and
Taek{-}Kyun Kim and
Yungu Kim and
Jiho Yoo and
Sungyong You and
Inyoul Y. Lee and
George Carlson and
Leroy Hood and
Seungjin Choi and
Daehee Hwang},
title = {Principal network analysis: identification of subnetworks representing
major dynamics using gene expression data},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {391--398},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq670},
doi = {10.1093/BIOINFORMATICS/BTQ670},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKKYYLCHCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimL11,
author = {Ryung S. Kim and
Juan Lin},
title = {Multi-level mixed effects models for bead arrays},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {633--640},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq708},
doi = {10.1093/BIOINFORMATICS/BTQ708},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KinsellaHNFB11,
author = {Marcus Kinsella and
Olivier Harismendy and
Masakazu Nakano and
Kelly A. Frazer and
Vineet Bafna},
title = {Sensitive gene fusion detection using ambiguously mapping RNA-Seq
read pairs},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1068--1075},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr085},
doi = {10.1093/BIOINFORMATICS/BTR085},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KinsellaHNFB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirchnerXSS11,
author = {Marc Kirchner and
Buote Xu and
Hanno Steen and
Judith A. J. Steen},
title = {libfbi: a {C++} implementation for fast box intersection and application
to sparse mass spectrometry data},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1166--1167},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr084},
doi = {10.1093/BIOINFORMATICS/BTR084},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirchnerXSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kiryu11,
author = {Hisanori Kiryu},
title = {Sufficient statistics and expectation maximization algorithms in phylogenetic
tree models},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2346--2353},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr420},
doi = {10.1093/BIOINFORMATICS/BTR420},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kiryu11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KiryuTIYSA11,
author = {Hisanori Kiryu and
Goro Terai and
Osamu Imamura and
Hiroyuki Yoneyama and
Kenji Suzuki and
Kiyoshi Asai},
title = {A detailed investigation of accessibilities around target sites of
siRNAs and miRNAs},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1788--1797},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr276},
doi = {10.1093/BIOINFORMATICS/BTR276},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KiryuTIYSA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleinBKGRHD11,
author = {Hans{-}Ulrich Klein and
Christoph Bartenhagen and
Alexander Kohlmann and
Vera Grossmann and
Christian Ruckert and
Torsten Haferlach and
Martin Dugas},
title = {R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454
Sequencing data},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1162--1163},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr102},
doi = {10.1093/BIOINFORMATICS/BTR102},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KleinBKGRHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlingbeilEGM11,
author = {Guido Klingbeil and
Radek Erban and
Mike B. Giles and
Philip K. Maini},
title = {{STOCHSIMGPU:} parallel stochastic simulation for the Systems Biology
Toolbox 2 for {MATLAB}},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1170--1171},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr068},
doi = {10.1093/BIOINFORMATICS/BTR068},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlingbeilEGM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlinglmuellerTP11,
author = {Florian Klinglmueller and
Thomas Tuechler and
Martin Posch},
title = {Cross-platform comparison of microarray data using order restricted
inference},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {953--960},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr066},
doi = {10.1093/BIOINFORMATICS/BTR066},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlinglmuellerTP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Knowles-BarleyBMA11,
author = {Seymour Knowles{-}Barley and
Nancy J. Butcher and
Ian A. Meinertzhagen and
J. Douglas Armstrong},
title = {Biologically inspired {EM} image alignment and neural reconstruction},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2216--2223},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr378},
doi = {10.1093/BIOINFORMATICS/BTR378},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Knowles-BarleyBMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KocbekSSKPTKAT11,
author = {Simon Kocbek and
Rune S{\ae}tre and
Gregor Stiglic and
Jin{-}Dong Kim and
Igor Pernek and
Yoshimasa Tsuruoka and
Peter Kokol and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {{AGRA:} analysis of gene ranking algorithms},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1185--1186},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr097},
doi = {10.1093/BIOINFORMATICS/BTR097},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KocbekSSKPTKAT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoehlerICG11,
author = {Ryan Koehler and
Hadar Issac and
Nicole Cloonan and
Sean M. Grimmond},
title = {The uniqueome: a mappability resource for short-tag sequencing},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {272--274},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq640},
doi = {10.1093/BIOINFORMATICS/BTQ640},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoehlerICG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoflerPS11,
author = {Robert Kofler and
Ram Vinay Pandey and
Christian Schl{\"{o}}tterer},
title = {PoPoolation2: identifying differentiation between populations using
sequencing of pooled {DNA} samples (Pool-Seq)},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3435--3436},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr589},
doi = {10.1093/BIOINFORMATICS/BTR589},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoflerPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KohNSLWM11,
author = {Chuan Hock Koh and
Masao Nagasaki and
Ayumu Saito and
Chen Li and
Limsoon Wong and
Satoru Miyano},
title = {{MIRACH:} efficient model checker for quantitative biological pathway
models},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {734--735},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq727},
doi = {10.1093/BIOINFORMATICS/BTQ727},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KohNSLWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KohlhoffSHPA11,
author = {Kai J. Kohlhoff and
Marc H. Sosnick and
William T. Hsu and
Vijay S. Pande and
Russ B. Altman},
title = {{CAMPAIGN:} an open-source library of GPU-accelerated data clustering
algorithms},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2321--2322},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr386},
doi = {10.1093/BIOINFORMATICS/BTR386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KohlhoffSHPA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KolbeE11,
author = {Diana L. Kolbe and
Sean R. Eddy},
title = {Fast filtering for {RNA} homology search},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3102--3109},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr545},
doi = {10.1093/BIOINFORMATICS/BTR545},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KolbeE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonagurthuASL11,
author = {Arun Siddharth Konagurthu and
Lloyd Allison and
Peter J. Stuckey and
Arthur M. Lesk},
title = {Piecewise linear approximation of protein structures using the principle
of minimum message length},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {43--51},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr240},
doi = {10.1093/BIOINFORMATICS/BTR240},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonagurthuASL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonopacDC11,
author = {Martin Konopac and
Petra Dusatkova and
Ondrej Cinek},
title = {SNPman: a program for genotype calling using run data from TaqMan
allelic discrimination},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2306--2308},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr383},
doi = {10.1093/BIOINFORMATICS/BTR383},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonopacDC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Konopka11,
author = {Tomasz Konopka},
title = {Automated analysis of biological oscillator models using mode decomposition},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {961--967},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr069},
doi = {10.1093/BIOINFORMATICS/BTR069},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Konopka11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KorenTP11,
author = {Sergey Koren and
Todd J. Treangen and
Mihai Pop},
title = {Bambus 2: scaffolding metagenomes},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2964--2971},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr520},
doi = {10.1093/BIOINFORMATICS/BTR520},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KorenTP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Koslicki11,
author = {David Koslicki},
title = {Topological entropy of {DNA} sequences},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1061--1067},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr077},
doi = {10.1093/BIOINFORMATICS/BTR077},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Koslicki11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KotaDRD11,
author = {Pradeep Kota and
Feng Ding and
Srinivas Ramachandran and
Nikolay V. Dokholyan},
title = {Gaia: automated quality assessment of protein structure models},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2209--2215},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr374},
doi = {10.1093/BIOINFORMATICS/BTR374},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KotaDRD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KruegerA11,
author = {Felix Krueger and
Simon R. Andrews},
title = {Bismark: a flexible aligner and methylation caller for Bisulfite-Seq
applications},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1571--1572},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr167},
doi = {10.1093/BIOINFORMATICS/BTR167},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KruegerA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuchaievP11,
author = {Oleksii Kuchaiev and
Natasa Przulj},
title = {Integrative network alignment reveals large regions of global network
similarity in yeast and human},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1390--1396},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr127},
doi = {10.1093/BIOINFORMATICS/BTR127},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuchaievP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KulakovskiyBKEMEM11,
author = {Ivan V. Kulakovskiy and
A. A. Belostotsky and
Artem S. Kasianov and
Natalia G. Esipova and
Yulia A. Medvedeva and
I. A. Eliseeva and
Vsevolod J. Makeev},
title = {A deeper look into transcription regulatory code by preferred pair
distance templates for transcription factor binding sites},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2621--2624},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr453},
doi = {10.1093/BIOINFORMATICS/BTR453},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KulakovskiyBKEMEM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarH11,
author = {Sudhir Kumar and
S. Blair Hedges},
title = {TimeTree2: species divergence times on the iPhone},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2023--2024},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr315},
doi = {10.1093/BIOINFORMATICS/BTR315},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarKEBDJWRBPYKGMN11,
author = {Sudhir Kumar and
Charlotte Konikoff and
Bernard Van Emden and
Christopher Busick and
Kailah T. Davis and
Shuiwang Ji and
Lin{-}Wei Wu and
Hector Ramos and
Thomas Brody and
Sethuraman Panchanathan and
Jieping Ye and
Timothy L. Karr and
Kristyn Gerold and
Michael McCutchan and
Stuart J. Newfeld},
title = {FlyExpress: visual mining of spatiotemporal patterns for genes and
publications in \emph{Drosophila} embryogenesis},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3319--3320},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr567},
doi = {10.1093/BIOINFORMATICS/BTR567},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarKEBDJWRBPYKGMN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KurbatovaAKSK11,
author = {Natalja Kurbatova and
Tomasz Adamusiak and
Pavel Kurnosov and
Morris A. Swertz and
Misha Kapushesky},
title = {ontoCAT: an {R} package for ontology traversal and search},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2468--2470},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr375},
doi = {10.1093/BIOINFORMATICS/BTR375},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KurbatovaAKSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuttippurathuHLSMLHPK11,
author = {Lakshmi Kuttippurathu and
Michael Hsing and
Yongchao Liu and
Bertil Schmidt and
Douglas L. Maskell and
Kyungjoon Lee and
Aibin He and
William T. Pu and
Sek Won Kong},
title = {CompleteMOTIFs: {DNA} motif discovery platform for transcription factor
binding experiments},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {715--717},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq707},
doi = {10.1093/BIOINFORMATICS/BTQ707},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuttippurathuHLSMLHPK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kyriazopoulou-PanagiotopoulouHASBB11,
author = {Sofia Kyriazopoulou{-}Panagiotopoulou and
Dorna Kashef Haghighi and
Sarah J. Aerni and
Andreas Sundquist and
Sivan Bercovici and
Serafim Batzoglou},
title = {Reconstruction of genealogical relationships with applications to
Phase {III} of HapMap},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {333--341},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr243},
doi = {10.1093/BIOINFORMATICS/BTR243},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kyriazopoulou-PanagiotopoulouHASBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaarhovenNM11,
author = {Twan van Laarhoven and
Sander B. Nabuurs and
Elena Marchiori},
title = {Gaussian interaction profile kernels for predicting drug-target interaction},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3036--3043},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr500},
doi = {10.1093/BIOINFORMATICS/BTR500},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaarhovenNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LabajLLMWK11,
author = {Pawel P. Labaj and
Germ{\'{a}}n G. Leparc and
Bryan E. Linggi and
Lye Meng Markillie and
H. Steven Wiley and
David P. Kreil},
title = {Characterization and improvement of RNA-Seq precision in quantitative
transcript expression profiling},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {383--391},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr247},
doi = {10.1093/BIOINFORMATICS/BTR247},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LabajLLMWK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LagorceMBSTMGV11,
author = {David Lagorce and
Julien Maupetit and
Jonathan B. Baell and
Olivier Sperandio and
Pierre Tuff{\'{e}}ry and
Maria A. Miteva and
Herv{\'{e}} Galons and
Bruno O. Villoutreix},
title = {The FAF-Drugs2 server: a multistep engine to prepare electronic chemical
compound collections},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2018--2020},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr333},
doi = {10.1093/BIOINFORMATICS/BTR333},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LagorceMBSTMGV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaiYWLN11,
author = {Darong Lai and
Xinyi Yang and
Gang Wu and
Yuanhua Liu and
Christine Nardini},
title = {Inference of gene networks - application to \emph{Bifidobacterium}},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {232--237},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq629},
doi = {10.1093/BIOINFORMATICS/BTQ629},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaiYWLN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lajeunesse11,
author = {Marc J. Lajeunesse},
title = {\emph{phyloMeta}: a program for phylogenetic comparative analyses
with meta-analysis},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2603--2604},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr438},
doi = {10.1093/BIOINFORMATICS/BTR438},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lajeunesse11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LajugieB11,
author = {Julien Lajugie and
Eric E. Bouhassira},
title = {GenPlay, a multipurpose genome analyzer and browser},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1889--1893},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr309},
doi = {10.1093/BIOINFORMATICS/BTR309},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LajugieB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LakinYPEP11,
author = {Matthew R. Lakin and
Simon Youssef and
Filippo Polo and
Stephen Emmott and
Andrew Phillips},
title = {Visual {DSD:} a design and analysis tool for {DNA} strand displacement
systems},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3211--3213},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr543},
doi = {10.1093/BIOINFORMATICS/BTR543},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LakinYPEP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LamyWOA11,
author = {Philippe Lamy and
Carsten Wiuf and
Torben F. {\O}rntoft and
Claus L. Andersen},
title = {Rseg - an {R} package to optimize segmentation of {SNP} array data},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {419--420},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq668},
doi = {10.1093/BIOINFORMATICS/BTQ668},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LamyWOA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LanBAWJ11,
author = {Xun Lan and
Russell Bonneville and
Jeff Apostolos and
Wangcheng Wu and
Victor X. Jin},
title = {W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip
and ChIP-seq data},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {428--430},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq669},
doi = {10.1093/BIOINFORMATICS/BTQ669},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LanBAWJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaoXYJZ11,
author = {Yong{-}Min Lao and
Lan Xiao and
Zhi{-}Wei Ye and
Jian{-}Guo Jiang and
Shi{-}Shui Zhou},
title = {\emph{In silico} analysis of phytoene synthase and its promoter reveals
hints for regulation mechanisms of carotenogenesis in \emph{Duanliella
bardawil}},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2201--2208},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr371},
doi = {10.1093/BIOINFORMATICS/BTR371},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaoXYJZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LarssonSN11,
author = {Ola Larsson and
Nahum Sonenberg and
Robert Nadon},
title = {\emph{anota}: analysis of differential translation in genome-wide
studies},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1440--1441},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr146},
doi = {10.1093/BIOINFORMATICS/BTR146},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LarssonSN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LarssonSWE11,
author = {Per Larsson and
Marcin J. Skwark and
Bj{\"{o}}rn Wallner and
Arne Elofsson},
title = {Improved predictions by Pcons.net using multiple templates},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {426--427},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq664},
doi = {10.1093/BIOINFORMATICS/BTQ664},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LarssonSWE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LassmannHD11,
author = {Timo Lassmann and
Yoshihide Hayashizaki and
Carsten O. Daub},
title = {SAMStat: monitoring biases in next generation sequencing data},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {130--131},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq614},
doi = {10.1093/BIOINFORMATICS/BTQ614},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LassmannHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LayekDBD11,
author = {Ritwik Layek and
Aniruddha Datta and
Michael L. Bittner and
Edward R. Dougherty},
title = {Cancer therapy design based on pathway logic},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {548--555},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq703},
doi = {10.1093/BIOINFORMATICS/BTQ703},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LayekDBD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeK11,
author = {Duc{-}Hau Le and
Yung{-}Keun Kwon},
title = {The effects of feedback loops on disease comorbidity in human signaling
networks},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1113--1120},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr082},
doi = {10.1093/BIOINFORMATICS/BTR082},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeK11a,
author = {Duc{-}Hau Le and
Yung{-}Keun Kwon},
title = {NetDS: a Cytoscape plugin to analyze the robustness of dynamics and
feedforward/feedback loop structures of biological networks},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2767--2768},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr466},
doi = {10.1093/BIOINFORMATICS/BTR466},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeK11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeKWM11,
author = {Woonghee Lee and
Jin Hae Kim and
William M. Westler and
John L. Markley},
title = {PONDEROSA, an automated 3D-NOESY peak picking program, enables automated
protein structure determination},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1727--1728},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr200},
doi = {10.1093/BIOINFORMATICS/BTR200},
timestamp = {Mon, 30 Oct 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeKWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeLHBL11,
author = {Tzong{-}Yi Lee and
Zong{-}Qing Lin and
Sheng{-}Jen Hsieh and
Neil Arvin Breta{\~{n}}a and
Cheng{-}Tsung Lu},
title = {Exploiting maximal dependence decomposition to identify conserved
motifs from a group of aligned signal sequences},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1780--1787},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr291},
doi = {10.1093/BIOINFORMATICS/BTR291},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeLHBL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeungYYPWLCQLC11,
author = {Henry C. M. Leung and
Siu{-}Ming Yiu and
Bin Yang and
Yu Peng and
Yi Wang and
Zhihua Liu and
Jing{-}Chi Chen and
Junjie Qin and
Ruiqiang Li and
Francis Y. L. Chin},
title = {A robust and accurate binning algorithm for metagenomic sequences
with arbitrary species abundance ratio},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1489--1495},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr186},
doi = {10.1093/BIOINFORMATICS/BTR186},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeungYYPWLCQLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LexaMBKB11,
author = {Matej Lexa and
Tom{\'{a}}s Mart{\'{\i}}nek and
Ivana Burgetova and
Daniel Kopecek and
Marie Br{\'{a}}zdov{\'{a}}},
title = {A dynamic programming algorithm for identification of triplex-forming
sequences},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2510--2517},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr439},
doi = {10.1093/BIOINFORMATICS/BTR439},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LexaMBKB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li11,
author = {Heng Li},
title = {Tabix: fast retrieval of sequence features from generic TAB-delimited
files},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {718--719},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq671},
doi = {10.1093/BIOINFORMATICS/BTQ671},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li11a,
author = {Heng Li},
title = {Improving {SNP} discovery by base alignment quality},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1157--1158},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr076},
doi = {10.1093/BIOINFORMATICS/BTR076},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li11b,
author = {Heng Li},
title = {A statistical framework for {SNP} calling, mutation discovery, association
mapping and population genetical parameter estimation from sequencing
data},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2987--2993},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr509},
doi = {10.1093/BIOINFORMATICS/BTR509},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li11b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCLB11,
author = {Yuheng Li and
Nicholas Chia and
Mario Lauria and
Ralf Bundschuh},
title = {A performance enhanced {PSI-BLAST} based on hybrid alignment},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {31--37},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq621},
doi = {10.1093/BIOINFORMATICS/BTQ621},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiCLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCSM11,
author = {Yang Li and
Jeremy Chien and
David I. Smith and
Jian Ma},
title = {FusionHunter: identifying fusion transcripts in cancer using paired-end
RNA-seq},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1708--1710},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr265},
doi = {10.1093/BIOINFORMATICS/BTR265},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiCSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCZCS11,
author = {Ming Li and
Shuo Chen and
Joan Zhang and
Heidi Chen and
Yu Shyr},
title = {Wave-spec: a preprocessing package for mass spectrometry data},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {739--740},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq724},
doi = {10.1093/BIOINFORMATICS/BTQ724},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiCZCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiDFLW11,
author = {Jiahan Li and
Kiranmoy Das and
Guifang Fu and
Runze Li and
Rongling Wu},
title = {The Bayesian lasso for genome-wide association studies},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {516--523},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq688},
doi = {10.1093/BIOINFORMATICS/BTQ688},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiDFLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiFF11,
author = {Yunqi Li and
Yaping Fang and
Jianwen Fang},
title = {Predicting residue-residue contacts using random forest models},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3379--3384},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr579},
doi = {10.1093/BIOINFORMATICS/BTR579},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiFF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiFLL11,
author = {Qiwei Li and
Xiaodan Fan and
Tong Liang and
Shuo{-}Yen Robert Li},
title = {An {MCMC} algorithm for detecting short adjacent repeats shared by
multiple sequences},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1772--1779},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr287},
doi = {10.1093/BIOINFORMATICS/BTR287},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiFLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHC11,
author = {Jing Li and
Benjamin Horstman and
Yixuan Chen},
title = {Detecting epistatic effects in association studies at a genomic level
based on an ensemble approach},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {222--229},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr227},
doi = {10.1093/BIOINFORMATICS/BTR227},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLKL11,
author = {Zheng Li and
Ping Li and
Arun Krishnan and
Jingdong Liu},
title = {Large-scale dynamic gene regulatory network inference combining differential
equation models with local dynamic Bayesian network analysis},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2686--2691},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr454},
doi = {10.1093/BIOINFORMATICS/BTR454},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLKL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiMQR11,
author = {Andrew X. Li and
Manja Marz and
Jing Qin and
Christian M. Reidys},
title = {{RNA-RNA} interaction prediction based on multiple sequence alignments},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {456--463},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq659},
doi = {10.1093/BIOINFORMATICS/BTQ659},
timestamp = {Thu, 21 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiMQR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiRB11,
author = {Limin Li and
Barbara Rakitsch and
Karsten M. Borgwardt},
title = {ccSVM: correcting Support Vector Machines for confounding factors
in biological data classification},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {342--348},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr204},
doi = {10.1093/BIOINFORMATICS/BTR204},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiZ11,
author = {Yuan Li and
Shaojie Zhang},
title = {Finding stable local optimal {RNA} secondary structures},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2994--3001},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr510},
doi = {10.1093/BIOINFORMATICS/BTR510},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiangZZS11,
author = {Shide Liang and
Dandan Zheng and
Chi Zhang and
Daron M. Standley},
title = {Fast and accurate prediction of protein side-chain conformations},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2913--2914},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr482},
doi = {10.1093/BIOINFORMATICS/BTR482},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiangZZS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiberzonSPTTM11,
author = {Arthur Liberzon and
Aravind Subramanian and
Reid Pinchback and
Helga Thorvaldsd{\'{o}}ttir and
Pablo Tamayo and
Jill P. Mesirov},
title = {Molecular signatures database (MSigDB) 3.0},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1739--1740},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr260},
doi = {10.1093/BIOINFORMATICS/BTR260},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiberzonSPTTM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LimCM11,
author = {Huat Chye Lim and
Marcel E. Curlin and
John E. Mittler},
title = {{HIV} Therapy Simulator: a graphical user interface for comparing
the effectiveness of novel therapy regimens},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3065--3066},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr515},
doi = {10.1093/BIOINFORMATICS/BTR515},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LimCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinJK11,
author = {Michael F. Lin and
Irwin Jungreis and
Manolis Kellis},
title = {PhyloCSF: a comparative genomics method to distinguish protein coding
and non-coding regions},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {275--282},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr209},
doi = {10.1093/BIOINFORMATICS/BTR209},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinJK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinLSZPD11,
author = {Yong Lin and
Jian Li and
Hui Shen and
Lei Zhang and
Christopher J. Papasian and
Hong{-}Wen Deng},
title = {Comparative studies of \emph{de novo} assembly tools for next-generation
sequencing technologies},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2031--2037},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr319},
doi = {10.1093/BIOINFORMATICS/BTR319},
timestamp = {Fri, 02 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinLSZPD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindenbaumSPR11,
author = {Pierre Lindenbaum and
Solena Le Scouarnec and
Vincent Portero and
Richard Redon},
title = {Knime4Bio: a set of custom nodes for the interpretation of next-generation
sequencing data with {KNIME}},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3200--3201},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr554},
doi = {10.1093/BIOINFORMATICS/BTR554},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindenbaumSPR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindermanPCB11,
author = {George C. Linderman and
Vishal N. Patel and
Mark R. Chance and
G{\"{u}}rkan Bebek},
title = {BiC: a web server for calculating bimodality of coexpression between
gene and protein networks},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1174--1175},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr086},
doi = {10.1093/BIOINFORMATICS/BTR086},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindermanPCB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinkeGG11,
author = {Burkhard Linke and
Robert Giegerich and
Alexander Goesmann},
title = {Conveyor: a workflow engine for bioinformatic analyses},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {903--911},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr040},
doi = {10.1093/BIOINFORMATICS/BTR040},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinkeGG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuCT11,
author = {Yu{-}Cheng Liu and
Chun{-}Pei Cheng and
Vincent S. Tseng},
title = {Discovering relational-based association rules with multiple minimum
supports on microarray datasets},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3142--3148},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr526},
doi = {10.1093/BIOINFORMATICS/BTR526},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuCT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHCDF11,
author = {Zhenqiu Liu and
William Hsiao and
Brandi L. Cantarel and
Elliott Franco Dr{\'{a}}bek and
Claire Fraser{-}Liggett},
title = {Sparse distance-based learning for simultaneous multiclass classification
and feature selection of metagenomic data},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3242--3249},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr547},
doi = {10.1093/BIOINFORMATICS/BTR547},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuHCDF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHSLKWL11,
author = {Qian Liu and
Steven C. H. Hoi and
Chinh T. T. Su and
Zhenhua Li and
Chee Keong Kwoh and
Limsoon Wong and
Jinyan Li},
title = {Structural analysis of the hot spots in the binding between {H1N1}
{HA} and the 2D1 antibody: do mutations of {H1N1} from 1918 to 2009
affect much on this binding?},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2529--2536},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr437},
doi = {10.1093/BIOINFORMATICS/BTR437},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuHSLKWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSWHWLZWPCZCSZ11,
author = {Xinyi Liu and
Xubo Su and
Fei Wang and
Zhimin Huang and
Qi Wang and
Zhen Li and
Ruina Zhang and
Lifang Wu and
Yi Pan and
Yingyi Chen and
Hanyi Zhuang and
Guoqiang Chen and
Ting Shi and
Jian Zhang},
title = {ODORactor: a web server for deciphering olfactory coding},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2302--2303},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr385},
doi = {10.1093/BIOINFORMATICS/BTR385},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSWHWLZWPCZCSZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LongairBA11,
author = {Mark Longair and
Dean A. Baker and
J. Douglas Armstrong},
title = {Simple Neurite Tracer: open source software for reconstruction, visualization
and analysis of neuronal processes},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2453--2454},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr390},
doi = {10.1093/BIOINFORMATICS/BTR390},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LongairBA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LopesSSMFNAKK11,
author = {Tiago J. S. Lopes and
Martin H. Schaefer and
Jason E. Shoemaker and
Yukiko Matsuoka and
Jean{-}Fred Fontaine and
Gabriele Neumann and
Miguel A. Andrade{-}Navarro and
Yoshihiro Kawaoka and
Hiroaki Kitano},
title = {Tissue-specific subnetworks and characteristics of publicly available
human protein interaction databases},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2414--2421},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr414},
doi = {10.1093/BIOINFORMATICS/BTR414},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LopesSSMFNAKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lopez-BlancoGC11,
author = {Jos{\'{e}} Ram{\'{o}}n L{\'{o}}pez{-}Blanco and
Jos{\'{e}} Ignacio Garz{\'{o}}n and
Pablo Chac{\'{o}}n},
title = {iMod: multipurpose normal mode analysis in internal coordinates},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2843--2850},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr497},
doi = {10.1093/BIOINFORMATICS/BTR497},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lopez-BlancoGC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LopezS11,
author = {Marcela D{\'{a}}vila L{\'{o}}pez and
Tore Samuelsson},
title = {eGOB: eukaryotic Gene Order Browser},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1150--1151},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr075},
doi = {10.1093/BIOINFORMATICS/BTR075},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LopezS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LouNLTCL11,
author = {Shao{-}Ke Lou and
Bing Ni and
Leung{-}Yau Lo and
Stephen Kwok{-}Wing Tsui and
Ting{-}Fung Chan and
Kwong{-}Sak Leung},
title = {ABMapper: a suffix array-based tool for multi-location searching and
splice-junction mapping},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {421--422},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq656},
doi = {10.1093/BIOINFORMATICS/BTQ656},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LouNLTCL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LouhimoH11,
author = {Riku Louhimo and
Sampsa Hautaniemi},
title = {CNAmet: an {R} package for integrating copy number, methylation and
expression data},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {887--888},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr019},
doi = {10.1093/BIOINFORMATICS/BTR019},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LouhimoH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LourencoPK11,
author = {Vanda M. Louren{\c{c}}o and
Ana M. Pires and
M. Kirst},
title = {Robust linear regression methods in association studies},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {815--821},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr006},
doi = {10.1093/BIOINFORMATICS/BTR006},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LourencoPK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuZQDZ11,
author = {Yiming Lu and
Yang Zhou and
Wubin Qu and
Minghua Deng and
Chenggang Zhang},
title = {A Lasso regression model for the construction of microRNA-target regulatory
networks},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2406--2413},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr410},
doi = {10.1093/BIOINFORMATICS/BTR410},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuZQDZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuckT11,
author = {Katja Luck and
Gilles Trav{\'{e}}},
title = {Phage display can select over-hydrophobic sequences that may impair
prediction of natural domain-peptide interactions},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {899--902},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr060},
doi = {10.1093/BIOINFORMATICS/BTR060},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuckT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LukashinNBPMYD11,
author = {Igor Lukashin and
Pavel S. Novichkov and
Dario Boffelli and
Alex R. Paciorkowski and
Simon Minovitsky and
Song Yang and
Inna Dubchak},
title = {{VISTA} Region Viewer (RViewer) - a computational system for prioritizing
genomic intervals for biomedical studies},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2595--2597},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr440},
doi = {10.1093/BIOINFORMATICS/BTR440},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LukashinNBPMYD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LunaSIAK11,
author = {Augustin Luna and
Margot Sunshine and
Martijn P. van Iersel and
Mirit I. Aladjem and
Kurt W. Kohn},
title = {PathVisio-MIM: PathVisio plugin for creating and editing Molecular
Interaction Maps (MIMs)},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2165--2166},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr336},
doi = {10.1093/BIOINFORMATICS/BTR336},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LunaSIAK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LutjohannSCRKL11,
author = {Dominic Sebastian L{\"{u}}tjohann and
Asmi H. Shah and
Michael P. Christen and
Florian Richter and
Karsten Knese and
Urban Liebel},
title = {'Sciencenet' - towards a global search and share engine for all scientific
knowledge},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1734--1735},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr181},
doi = {10.1093/BIOINFORMATICS/BTR181},
timestamp = {Thu, 19 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LutjohannSCRKL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaSKZ11,
author = {Haisu Ma and
Eric E. Schadt and
Lee M. Kaplan and
Hongyu Zhao},
title = {{COSINE:} COndition-SpecIfic sub-NEtwork identification using a global
optimization method},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1290--1298},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr136},
doi = {10.1093/BIOINFORMATICS/BTR136},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaSKZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaTBCCCHLOSSTWL11,
author = {Zeqiang Ma and
David L. Tabb and
Joseph Burden and
Matthew Chambers and
Matthew B. Cox and
Michael J. Cantrell and
Amy{-}Joan L. Ham and
Michael D. Litton and
Michael R. Oreto and
William C. Schultz and
Scott M. Sobecki and
Tina Y. Tsui and
Gregory R. Wernke and
Daniel C. Liebler},
title = {Supporting tool suite for production proteomics},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3214--3215},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr544},
doi = {10.1093/BIOINFORMATICS/BTR544},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaTBCCCHLOSSTWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaYRC11,
author = {Shujie Ma and
Lijian Yang and
Roberto Romero and
Yuehua Cui},
title = {Varying coefficient model for gene-environment interaction: a non-linear
look},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2119--2126},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr318},
doi = {10.1093/BIOINFORMATICS/BTR318},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaYRC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MachanickB11,
author = {Philip Machanick and
Timothy L. Bailey},
title = {MEME-ChIP: motif analysis of large {DNA} datasets},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1696--1697},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr189},
doi = {10.1093/BIOINFORMATICS/BTR189},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MachanickB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagisEKEP11,
author = {Andrew T. Magis and
John C. Earls and
Youn{-}Hee Ko and
James A. Eddy and
Nathan D. Price},
title = {Graphics processing unit implementations of relative expression analysis
algorithms enable dramatic computational speedup},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {872--873},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr033},
doi = {10.1093/BIOINFORMATICS/BTR033},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagisEKEP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagocS11,
author = {Tanja Magoc and
Steven L. Salzberg},
title = {{FLASH:} fast length adjustment of short reads to improve genome assemblies},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2957--2963},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr507},
doi = {10.1093/BIOINFORMATICS/BTR507},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagocS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MakelaHKYR11,
author = {Jarno M{\"{a}}kel{\"{a}} and
Heikki Huttunen and
Meenakshisundaram Kandhavelu and
Olli Yli{-}Harja and
Andre S. Ribeiro},
title = {Automatic detection of changes in the dynamics of delayed stochastic
gene networks and \emph{in vivo} production of {RNA} molecules in
\emph{Escherichia coli}},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2714--2720},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr471},
doi = {10.1093/BIOINFORMATICS/BTR471},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MakelaHKYR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Malde11,
author = {Ketil Malde},
title = {Flower: extracting information from pyrosequencing data},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1041--1042},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr063},
doi = {10.1093/BIOINFORMATICS/BTR063},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Malde11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManeckSKS11,
author = {Matthias Maneck and
Alexandra Schrader and
Dieter Kube and
Rainer Spang},
title = {Genomic data integration using guided clustering},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2231--2238},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr363},
doi = {10.1093/BIOINFORMATICS/BTR363},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManeckSKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarWQ11,
author = {Jessica Cara Mar and
Christine A. Wells and
John Quackenbush},
title = {Defining an informativeness metric for clustering gene expression
data},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1094--1100},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr074},
doi = {10.1093/BIOINFORMATICS/BTR074},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarWQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarcaisK11,
author = {Guillaume Mar{\c{c}}ais and
Carl Kingsford},
title = {A fast, lock-free approach for efficient parallel counting of occurrences
of \emph{k}-mers},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {764--770},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr011},
doi = {10.1093/BIOINFORMATICS/BTR011},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarcaisK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MareuilBMN11,
author = {Fabien Mareuil and
Christophe Blanchet and
Therese E. Malliavin and
Michael Nilges},
title = {Grid computing for improving conformational sampling in {NMR} structure
calculation},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1713--1714},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr255},
doi = {10.1093/BIOINFORMATICS/BTR255},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MareuilBMN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarkusBG11,
author = {Barak Markus and
Ohad S. Birk and
Dan Geiger},
title = {Integration of {SNP} genotyping confidence scores in {IBD} inference},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2880--2887},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr486},
doi = {10.1093/BIOINFORMATICS/BTR486},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarkusBG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinBE11,
author = {Paul Martin and
Anne Barton and
Stephen Eyre},
title = {{ASSIMILATOR:} a new tool to inform selection of associated genetic
variants for functional studies},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {144--146},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq611},
doi = {10.1093/BIOINFORMATICS/BTQ611},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinBE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinVBDWT11,
author = {Alberto J. M. Martin and
Michele Vidotto and
Filippo Boscariol and
Tom{\'{a}}s Di Domenico and
Ian Walsh and
Silvio C. E. Tosatto},
title = {{RING:} networking interacting residues, evolutionary information
and energetics in protein structures},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2003--2005},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr191},
doi = {10.1093/BIOINFORMATICS/BTR191},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinVBDWT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatzkeWMJSBPW11,
author = {Melissa M. Matzke and
Katrina M. Waters and
Thomas O. Metz and
Jon M. Jacobs and
Amy C. Sims and
Ralph S. Baric and
Joel G. Pounds and
Bobbie{-}Jo M. Webb{-}Robertson},
title = {Improved quality control processing of peptide-centric {LC-MS} proteomics
data},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2866--2872},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr479},
doi = {10.1093/BIOINFORMATICS/BTR479},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatzkeWMJSBPW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaucherKKK11,
author = {Markus Maucher and
Barbara Kracher and
Michael K{\"{u}}hl and
Hans A. Kestler},
title = {Inferring Boolean network structure via correlation},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1529--1536},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr166},
doi = {10.1093/BIOINFORMATICS/BTR166},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaucherKKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaverP11,
author = {Ales Maver and
Borut Peterlin},
title = {Positional integratomic approach in identification of genomic candidate
regions for Parkinson's disease},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1971--1978},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr313},
doi = {10.1093/BIOINFORMATICS/BTR313},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaverP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MayhewRJHH11,
author = {Michael B. Mayhew and
Joshua W. Robinson and
Boyoun Jung and
Steven B. Haase and
Alexander J. Hartemink},
title = {A generalized model for multi-marker analysis of cell cycle progression
in synchrony experiments},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {295--303},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr244},
doi = {10.1093/BIOINFORMATICS/BTR244},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MayhewRJHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McLeayLB11,
author = {Robert C. McLeay and
Chris J. Leat and
Timothy L. Bailey},
title = {Tissue-specific prediction of directly regulated genes},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2354--2360},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr399},
doi = {10.1093/BIOINFORMATICS/BTR399},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McLeayLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McPhersonWHHHLVSCS11,
author = {Andrew W. McPherson and
Chunxiao Wu and
Iman Hajirasouliha and
Fereydoun Hormozdiari and
Faraz Hach and
Anna Lapuk and
Stanislav Volik and
Sohrab P. Shah and
Colin C. Collins and
S{\"{u}}leyman Cenk Sahinalp},
title = {Comrad: detection of expressed rearrangements by integrated analysis
of RNA-Seq and low coverage genome sequence data},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1481--1488},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr184},
doi = {10.1093/BIOINFORMATICS/BTR184},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/McPhersonWHHHLVSCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MedvedevSKP11,
author = {Paul Medvedev and
Eric Scott and
Boyko Kakaradov and
Pavel A. Pevzner},
title = {Error correction of high-throughput sequencing datasets with non-uniform
coverage},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {137--141},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr208},
doi = {10.1093/BIOINFORMATICS/BTR208},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MedvedevSKP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MegleczPDGGGPM11,
author = {Emese Megl{\'{e}}cz and
Sylvain Piry and
Erick Desmarais and
Maxime Galan and
Andr{\'{e}} Gilles and
Emmanuel Guivier and
Nicolas Pech and
Jean{-}Fran{\c{c}}ois Martin},
title = {{SESAME} (SEquence Sorter {\&} AMplicon Explorer): genotyping
based on high-throughput multiplex amplicon sequencing},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {277--278},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq641},
doi = {10.1093/BIOINFORMATICS/BTQ641},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MegleczPDGGGPM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MehdiSKBB11,
author = {Ahmed M. Mehdi and
Muhammad Shoaib B. Sehgal and
Bostjan Kobe and
Timothy L. Bailey and
Mikael Bod{\'{e}}n},
title = {A probabilistic model of nuclear import of proteins},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1239--1246},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr121},
doi = {10.1093/BIOINFORMATICS/BTR121},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MehdiSKBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeiPKTSCS11,
author = {Teo Shu Mei and
Yudi Pawitan and
Vikrant Kumar and
Anbupalam Thalamuthu and
Mark Seielstad and
Kee Seng Chia and
Agus Salim},
title = {Multi-platform segmentation for joint detection of copy number variants},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1555--1561},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr162},
doi = {10.1093/BIOINFORMATICS/BTR162},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeiPKTSCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeinickeAL11,
author = {Peter Meinicke and
Kathrin Petra A{\ss}hauer and
Thomas Lingner},
title = {Mixture models for analysis of the taxonomic composition of metagenomes},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1618--1624},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr266},
doi = {10.1093/BIOINFORMATICS/BTR266},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeinickeAL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengesNM11,
author = {Fabian Menges and
Giuseppe Narzisi and
Bud Mishra},
title = {TotalReCaller: improved accuracy and performance via integrated alignment
and base-calling},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2330--2337},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr393},
doi = {10.1093/BIOINFORMATICS/BTR393},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MengesNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MenzelSG11,
author = {Peter Menzel and
Peter F. Stadler and
Jan Gorodkin},
title = {maxAlike: maximum likelihood-based sequence reconstruction with application
to improved primer design for unknown sequences},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {317--325},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq651},
doi = {10.1093/BIOINFORMATICS/BTQ651},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MenzelSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeslamaniRK11,
author = {Jamel Meslamani and
Didier Rognan and
Esther Kellenberger},
title = {sc-PDB: a database for identifying variations and multiplicity of
'druggable' binding sites in proteins},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1324--1326},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr120},
doi = {10.1093/BIOINFORMATICS/BTR120},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeslamaniRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerHBL11,
author = {Clifford A. Meyer and
Housheng H. He and
Myles Brown and
Xiaole Shirley Liu},
title = {BINOCh: binding inference from nucleosome occupancy changes},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1867--1868},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr279},
doi = {10.1093/BIOINFORMATICS/BTR279},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerHBL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiMDMFKT11,
author = {Huaiyu Mi and
Anushya Muruganujan and
Emek Demir and
Yukiko Matsuoka and
Akira Funahashi and
Hiroaki Kitano and
Paul D. Thomas},
title = {BioPAX support in CellDesigner},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3437--3438},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr586},
doi = {10.1093/BIOINFORMATICS/BTR586},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiMDMFKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiaoCJ11,
author = {Zhichao Miao and
Yang Cao and
Taijiao Jiang},
title = {{RASP:} rapid modeling of protein side chain conformations},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3117--3122},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr538},
doi = {10.1093/BIOINFORMATICS/BTR538},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiaoCJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinasWM11,
author = {Christopher Minas and
Simon J. Waddell and
Giovanni Montana},
title = {Distance-based differential analysis of gene curves},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3135--3141},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr528},
doi = {10.1093/BIOINFORMATICS/BTR528},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MinasWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiquelLRCBV11,
author = {Miquel Miquel and
I. L{\'{o}}pez{-}Ribera and
Miquel R{\`{a}}mia and
S{\`{o}}nia Casillas and
Antonio Barbadilla and
Carlos M. Vicient},
title = {{MASISH:} a database for gene expression in maize seeds},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {435--436},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq654},
doi = {10.1093/BIOINFORMATICS/BTQ654},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiquelLRCBV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirarabW11,
author = {Siavash Mirarab and
Tandy J. Warnow},
title = {{FASTSP:} linear time calculation of alignment accuracy},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3250--3258},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr553},
doi = {10.1093/BIOINFORMATICS/BTR553},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirarabW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MisirliHYLWCW11,
author = {Goksel Misirli and
Jennifer Hallinan and
Tommy Yu and
James R. Lawson and
Sarala M. Wimalaratne and
Mike T. Cooling and
Anil Wipat},
title = {Model annotation for synthetic biology: automating model to nucleotide
sequence conversion},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {973--979},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr048},
doi = {10.1093/BIOINFORMATICS/BTR048},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MisirliHYLWCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MisraALC11,
author = {Sanchit Misra and
Ankit Agrawal and
Wei{-}keng Liao and
Alok N. Choudhary},
title = {Anatomy of a hash-based long read sequence mapping algorithm for next
generation {DNA} sequencing},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {189--195},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq648},
doi = {10.1093/BIOINFORMATICS/BTQ648},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MisraALC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiziantyK11,
author = {Marcin J. Mizianty and
Lukasz A. Kurgan},
title = {Sequence-based prediction of protein crystallization, purification
and production propensity},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {24--33},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr229},
doi = {10.1093/BIOINFORMATICS/BTR229},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiziantyK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoalAB11,
author = {Iain H. Moal and
Rudi Agius and
Paul A. Bates},
title = {Protein-protein binding affinity prediction on a diverse set of structures},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3002--3009},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr513},
doi = {10.1093/BIOINFORMATICS/BTR513},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoalAB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MohammedGSM11,
author = {Monzoorul Haque Mohammed and
Tarini Shankar Ghosh and
Nitin Kumar Singh and
Sharmila S. Mande},
title = {{SPHINX} - an algorithm for taxonomic binning of metagenomic sequences},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {22--30},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq608},
doi = {10.1093/BIOINFORMATICS/BTQ608},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MohammedGSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MollBK11,
author = {Mark Moll and
Drew H. Bryant and
Lydia E. Kavraki},
title = {The LabelHash Server and Tools for substructure-based functional annotation},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2161--2162},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr343},
doi = {10.1093/BIOINFORMATICS/BTR343},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MollBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MooneyWP11,
author = {Catherine Mooney and
Yong{-}Hong Wang and
Gianluca Pollastri},
title = {SCLpred: protein subcellular localization prediction by N-to-1 neural
networks},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2812--2819},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr494},
doi = {10.1093/BIOINFORMATICS/BTR494},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MooneyWP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorganellaPC11,
author = {Sandro Morganella and
Stefano Maria Pagnotta and
Michele Ceccarelli},
title = {Finding recurrent copy number alterations preserving within-sample
homogeneity},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2949--2956},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr488},
doi = {10.1093/BIOINFORMATICS/BTR488},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorganellaPC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuUUH11,
author = {Fangping Mu and
Clifford J. Unkefer and
Pat J. Unkefer and
William S. Hlavacek},
title = {Prediction of metabolic reactions based on atomic and molecular properties
of small-molecule compounds},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1537--1545},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr177},
doi = {10.1093/BIOINFORMATICS/BTR177},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuUUH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuellerKDGD11,
author = {Laurin A. J. Mueller and
Karl G. Kugler and
Andreas Dander and
Armin Graber and
Matthias Dehmer},
title = {QuACN: an {R} package for analyzing complex biological networks quantitatively},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {140--141},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq606},
doi = {10.1093/BIOINFORMATICS/BTQ606},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuellerKDGD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuggeoA11,
author = {Vito M. R. Muggeo and
Giada Adelfio},
title = {Efficient change point detection for genomic sequences of continuous
measurements},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {161--166},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq647},
doi = {10.1093/BIOINFORMATICS/BTQ647},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuggeoA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeeH11,
author = {Sach Mukherjee and
Steven M. Hill},
title = {Network clustering: probing biological heterogeneity by sparse graphical
models},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {994--1000},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr070},
doi = {10.1093/BIOINFORMATICS/BTR070},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeeH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Muniz-FernandezCMN11,
author = {Fernando Mu{\~{n}}iz{-}Fernandez and
Angel Carre{\~{n}}o{-}Torres and
Carlos Morcillo{-}Suarez and
Arcadi Navarro},
title = {Genome-wide association studies pipeline (GWASpi): a desktop application
for genome-wide {SNP} analysis and management},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1871--1872},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr301},
doi = {10.1093/BIOINFORMATICS/BTR301},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Muniz-FernandezCMN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaderiKBW11,
author = {Nona Naderi and
Thomas Kappler and
Christopher J. O. Baker and
Ren{\'{e}} Witte},
title = {OrganismTagger: detection, normalization and grounding of organism
entities in biomedical documents},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2721--2729},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr452},
doi = {10.1093/BIOINFORMATICS/BTR452},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaderiKBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaeemFWP11,
author = {Asad Naeem and
Andrew P. French and
Darren M. Wells and
Tony P. Pridmore},
title = {High-throughput feature counting and measurement of roots},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1337--1338},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr126},
doi = {10.1093/BIOINFORMATICS/BTR126},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaeemFWP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NagasakiSFTUIJM11,
author = {Masao Nagasaki and
Ayumu Saito and
Andr{\'{e}} Fujita and
Georg Tremmel and
Kazuko Ueno and
Emi Ikeda and
Euna Jeong and
Satoru Miyano},
title = {Systems biology model repository for macrophage pathway simulation},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1591--1593},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr173},
doi = {10.1093/BIOINFORMATICS/BTR173},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NagasakiSFTUIJM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NarzisiM11,
author = {Giuseppe Narzisi and
Bud Mishra},
title = {Scoring-and-unfolding trimmed tree assembler: concepts, constructs
and comparisons},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {153--160},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq646},
doi = {10.1093/BIOINFORMATICS/BTQ646},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NarzisiM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Nepomuceno-ChamorroADNMAW11,
author = {Isabel A. Nepomuceno{-}Chamorro and
Francisco Azuaje and
Yvan Devaux and
Petr V. Nazarov and
Arnaud Muller and
Jes{\'{u}}s S. Aguilar{-}Ruiz and
Daniel R. Wagner},
title = {Prognostic transcriptional association networks: a new supervised
approach based on regression trees},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {252--258},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq645},
doi = {10.1093/BIOINFORMATICS/BTQ645},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Nepomuceno-ChamorroADNMAW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeudertK11,
author = {Gerd Neudert and
Gerhard Klebe},
title = {fconv: format conversion, manipulation and feature computation of
molecular data},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1021--1022},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr055},
doi = {10.1093/BIOINFORMATICS/BTR055},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeudertK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeveolWL11,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
W. John Wilbur and
Zhiyong Lu},
title = {Extraction of data deposition statements from the literature: a method
for automatically tracking research results},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3306--3312},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr573},
doi = {10.1093/BIOINFORMATICS/BTR573},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeveolWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Newell11,
author = {Nicholas E. Newell},
title = {Cascade detection for the extraction of localized sequence features;
specificity results for {HIV-1} protease and structure-function results
for the Schellman loop},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3415--3422},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr594},
doi = {10.1093/BIOINFORMATICS/BTR594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Newell11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiuZFWL11,
author = {Beifang Niu and
Zhengwei Zhu and
Limin Fu and
Sitao Wu and
Weizhong Li},
title = {FR-HIT, a very fast program to recruit metagenomic reads to homologous
reference genomes},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1704--1705},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr252},
doi = {10.1093/BIOINFORMATICS/BTR252},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiuZFWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NovershternRF11,
author = {Noa Novershtern and
Aviv Regev and
Nir Friedman},
title = {Physical Module Networks: an integrative approach for reconstructing
transcription regulation},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {177--185},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr222},
doi = {10.1093/BIOINFORMATICS/BTR222},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NovershternRF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NugentWJ11,
author = {Timothy Nugent and
Sean Ward and
David T. Jones},
title = {The {MEMPACK} alpha-helical transmembrane protein structure prediction
server},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1438--1439},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr096},
doi = {10.1093/BIOINFORMATICS/BTR096},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NugentWJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ODonnellWLHDLB11,
author = {Charles W. O'Donnell and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Mieszko Lis and
Randal Halfmann and
Srinivas Devadas and
Susan Lindquist and
Bonnie Berger},
title = {A method for probing the mutational landscape of amyloid structure},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {34--42},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr238},
doi = {10.1093/BIOINFORMATICS/BTR238},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ODonnellWLHDLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OconeS11,
author = {Andrea Ocone and
Guido Sanguinetti},
title = {Reconstructing transcription factor activities in hierarchical transcription
network motifs},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2873--2879},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr487},
doi = {10.1093/BIOINFORMATICS/BTR487},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OconeS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OhKBT11,
author = {Sunghee Oh and
Dongwan D. Kang and
Guy N. Brock and
George C. Tseng},
title = {Biological impact of missing-value imputation on downstream analyses
of gene expression profiles},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {78--86},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq613},
doi = {10.1093/BIOINFORMATICS/BTQ613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OhKBT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OldmeadowK11,
author = {Christopher Oldmeadow and
Jonathan M. Keith},
title = {Model selection in Bayesian segmentation of multiple {DNA} alignments},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {604--610},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq716},
doi = {10.1093/BIOINFORMATICS/BTQ716},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OldmeadowK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlechnovicMV11,
author = {Kliment Olechnovic and
Mindaugas Margelevicius and
Ceslovas Venclovas},
title = {Voroprot: an interactive tool for the analysis and visualization of
complex geometric features of protein structure},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {723--724},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq720},
doi = {10.1093/BIOINFORMATICS/BTQ720},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlechnovicMV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlexF11,
author = {Amy L. Olex and
Jacquelyn S. Fetrow},
title = {SC\({}^{\mbox{2}}\)ATmd: a tool for integration of the figure of merit
with cluster analysis for gene expression data},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1330--1331},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr115},
doi = {10.1093/BIOINFORMATICS/BTR115},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlexF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlshenBNSOS11,
author = {Adam B. Olshen and
Henrik Bengtsson and
Pierre Neuvial and
Paul T. Spellman and
Richard A. Olshen and
Venkatraman E. Seshan},
title = {Parent-specific copy number in paired tumor-normal studies using circular
binary segmentation},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2038--2046},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr329},
doi = {10.1093/BIOINFORMATICS/BTR329},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlshenBNSOS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OngLPSCT11,
author = {Rick Twee{-}Hee Ong and
Xuanyao Liu and
Wan{-}Ting Poh and
Xueling Sim and
Kee Seng Chia and
Yik{-}Ying Teo},
title = {A method for identifying haplotypes carrying the causative allele
in positive natural selection and genome-wide association studies},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {822--828},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr007},
doi = {10.1093/BIOINFORMATICS/BTR007},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OngLPSCT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OroszO11,
author = {Ferenc Orosz and
Judit Ov{\'{a}}di},
title = {Proteins without 3D structure: definition, detection and beyond},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1449--1454},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr175},
doi = {10.1093/BIOINFORMATICS/BTR175},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OroszO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OstrovnayaSOB11,
author = {Irina Ostrovnaya and
Venkatraman E. Seshan and
Adam B. Olshen and
Colin B. Begg},
title = {Clonality: an {R} package for testing clonal relatedness of two tumors
from the same patient based on their genomic profiles},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1698--1699},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr267},
doi = {10.1093/BIOINFORMATICS/BTR267},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OstrovnayaSOB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OuangraouaTC11,
author = {A{\"{\i}}da Ouangraoua and
Eric Tannier and
C{\'{e}}dric Chauve},
title = {Reconstructing the architecture of the ancestral amniote genome},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2664--2671},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr461},
doi = {10.1093/BIOINFORMATICS/BTR461},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OuangraouaTC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OuyangSGHLG11,
author = {Zhengyu Ouyang and
Mingzhou Song and
Robert G{\"{u}}th and
Thomas Ha and
Matt Larouche and
Daniel Goldowitz},
title = {Conserved and differential gene interactions in dynamical biological
systems},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2851--2858},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr472},
doi = {10.1093/BIOINFORMATICS/BTR472},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OuyangSGHLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PaliyF11,
author = {Oleg Paliy and
Brent D. Foy},
title = {Mathematical modeling of 16S ribosomal {DNA} amplification reveals
optimal conditions for the interrogation of complex microbial communities
with phylogenetic microarrays},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2134--2140},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr326},
doi = {10.1093/BIOINFORMATICS/BTR326},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PaliyF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PantanoEM11,
author = {Lorena Pantano and
Xavier Estivill and
Eulalia Mart{\'{\i}}},
title = {A non-biased framework for the annotation and classification of the
non-miRNA small {RNA} transcriptome},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3202--3203},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr527},
doi = {10.1093/BIOINFORMATICS/BTR527},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PantanoEM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParikhWCX11,
author = {Ankur P. Parikh and
Wei Wu and
Ross E. Curtis and
Eric P. Xing},
title = {{TREEGL:} reverse engineering tree-evolving gene networks underlying
developing biological lineages},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {196--204},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr239},
doi = {10.1093/BIOINFORMATICS/BTR239},
timestamp = {Thu, 04 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParikhWCX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkM11,
author = {Yungki Park and
Edward M. Marcotte},
title = {Revisiting the negative example sampling problem for predicting protein-protein
interactions},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3024--3028},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr514},
doi = {10.1093/BIOINFORMATICS/BTR514},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PedersenHIF11,
author = {Brent Pedersen and
Tzung{-}Fu Hsieh and
Christian Ibarra and
Robert L. Fischer},
title = {MethylCoder: software pipeline for bisulfite-treated sequences},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2435--2436},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr394},
doi = {10.1093/BIOINFORMATICS/BTR394},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PedersenHIF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PedersenTF11,
author = {Brent S. Pedersen and
Haibao Tang and
Michael Freeling},
title = {Gobe: an interactive, web-based tool for comparative genomic visualization},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1015--1016},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr056},
doi = {10.1093/BIOINFORMATICS/BTR056},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PedersenTF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengLM11,
author = {Hanchuan Peng and
Fuhui Long and
Gene Myers},
title = {Automatic 3D neuron tracing using all-path pruning},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {239--247},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr237},
doi = {10.1093/BIOINFORMATICS/BTR237},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengLM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengLYC11,
author = {Yu Peng and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Francis Y. L. Chin},
title = {Meta-IDBA: a \emph{de Novo} assembler for metagenomic data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {94--101},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr216},
doi = {10.1093/BIOINFORMATICS/BTR216},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengLYC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PicardiDCCP11,
author = {Ernesto Picardi and
Mattia D'Antonio and
Danilo Carrabino and
Tiziana Castrignan{\`{o}} and
Graziano Pesole},
title = {ExpEdit: a webserver to explore human {RNA} editing in RNA-Seq experiments},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1311--1312},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr117},
doi = {10.1093/BIOINFORMATICS/BTR117},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PicardiDCCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PickrellGGP11,
author = {Joseph K. Pickrell and
Daniel J. Gaffney and
Yoav Gilad and
Jonathan K. Pritchard},
title = {False positive peaks in ChIP-seq and other sequencing-based functional
assays caused by unannotated high copy number regions},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2144--2146},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr354},
doi = {10.1093/BIOINFORMATICS/BTR354},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PickrellGGP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PierleoniMC11,
author = {Andrea Pierleoni and
Pier Luigi Martelli and
Rita Casadio},
title = {MemLoci: predicting subcellular localization of membrane proteins
in eukaryotes},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1224--1230},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr108},
doi = {10.1093/BIOINFORMATICS/BTR108},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PierleoniMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PinnaSHF11,
author = {Andrea Pinna and
Nicola Soranzo and
Ina Hoeschele and
Alberto de la Fuente},
title = {Simulating systems genetics data with SysGenSIM},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2459--2462},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr407},
doi = {10.1093/BIOINFORMATICS/BTR407},
timestamp = {Mon, 08 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PinnaSHF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiredduLZ11,
author = {Luca Pireddu and
Simone Leo and
Gianluigi Zanetti},
title = {{SEAL:} a distributed short read mapping and duplicate removal tool},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2159--2160},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr325},
doi = {10.1093/BIOINFORMATICS/BTR325},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiredduLZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PirrungKCSWK11,
author = {Meg Pirrung and
Ryan Kennedy and
J. Gregory Caporaso and
Jesse Stombaugh and
Doug Wendel and
Rob Knight},
title = {TopiaryExplorer: visualizing large phylogenetic trees with environmental
metadata},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3067--3069},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr517},
doi = {10.1093/BIOINFORMATICS/BTR517},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PirrungKCSWK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PopoviciBD11,
author = {Vlad Popovici and
Eva Budinska and
Mauro Delorenzi},
title = {Rgtsp: a generalized top scoring pairs package for class prediction},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1729--1730},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr233},
doi = {10.1093/BIOINFORMATICS/BTR233},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PopoviciBD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PosekanyFS11,
author = {Alexandra Posekany and
K. Felsenstein and
Peter Sykacek},
title = {Biological assessment of robust noise models in microarray data analysis},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {807--814},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr018},
doi = {10.1093/BIOINFORMATICS/BTR018},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PosekanyFS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoundsGJWPFLG11,
author = {Stan Pounds and
Cuilan Lani Gao and
Robert A. Johnson and
Karen D. Wright and
Helen Poppleton and
David Finkelstein and
Sarah E. S. Leary and
Richard J. Gilbertson},
title = {A procedure to statistically evaluate agreement of differential expression
for cross-species genomics},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2098--2103},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr362},
doi = {10.1093/BIOINFORMATICS/BTR362},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PoundsGJWPFLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PraneenararatTI11,
author = {Thanet Praneenararat and
Toshihisa Takagi and
Wataru Iwasaki},
title = {Interactive, multiscale navigation of large and complicated biological
networks},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1121--1127},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr083},
doi = {10.1093/BIOINFORMATICS/BTR083},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PraneenararatTI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PratFLL11,
author = {Yosef Prat and
Menachem Fromer and
Nathan Linial and
Michal Linial},
title = {Recovering key biological constituents through sparse representation
of gene expression},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {655--661},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr002},
doi = {10.1093/BIOINFORMATICS/BTR002},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PratFLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuLLKMP11,
author = {Lei Qu and
Fuhui Long and
Xiao Liu and
Stuart K. Kim and
Eugene W. Myers and
Hanchuan Peng},
title = {Simultaneous recognition and segmentation of cells: application in
\emph{C.elegans}},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2895--2902},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr480},
doi = {10.1093/BIOINFORMATICS/BTR480},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuLLKMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ramirez-GonzalezCM11,
author = {Ricardo Ramirez{-}Gonzalez and
Mario C{\'{a}}ccamo and
Daniel MacLean},
title = {Gee Fu: a sequence version and web-services database tool for genomic
assembly, genome feature and {NGS} data},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2754--2755},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr442},
doi = {10.1093/BIOINFORMATICS/BTR442},
timestamp = {Sun, 04 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ramirez-GonzalezCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RapinLC11,
author = {Nicolas Rapin and
Ole Lund and
Filippo Castiglione},
title = {Immune system simulation online},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2013--2014},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr335},
doi = {10.1093/BIOINFORMATICS/BTR335},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RapinLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Raychaudhuri11,
author = {Soumya Raychaudhuri},
title = {{VIZ-GRAIL:} visualizing functional connections across disease loci},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1589--1590},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr185},
doi = {10.1093/BIOINFORMATICS/BTR185},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Raychaudhuri11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RedestigC11,
author = {Henning Redestig and
Ivan G. Costa},
title = {Detection and interpretation of metabolite-transcript coresponses
using combined profiling data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {357--365},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr231},
doi = {10.1093/BIOINFORMATICS/BTR231},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RedestigC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReidysHAPSN11,
author = {Christian M. Reidys and
Fenix W. D. Huang and
J{\o}rgen E. Andersen and
Robert C. Penner and
Peter F. Stadler and
Markus E. Nebel},
title = {Topology and prediction of {RNA} pseudoknots},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1076--1085},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr090},
doi = {10.1093/BIOINFORMATICS/BTR090},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReidysHAPSN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RezolaFBPPWSBP11,
author = {Alberto Rezola and
Luis F. de Figueiredo and
Matthias Brock and
Jon Pey and
Adam Podhorski and
Christoph Wittmann and
Stefan Schuster and
Alexander Bockmayr and
Francisco J. Planes},
title = {Exploring metabolic pathways in genome-scale networks via generating
flux modes},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {534--540},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq681},
doi = {10.1093/BIOINFORMATICS/BTQ681},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RezolaFBPPWSBP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Riba-GrognuzKFXW11,
author = {Oksana Riba{-}Grognuz and
Laurent Keller and
Laurent Falquet and
Ioannis Xenarios and
Yannick Wurm},
title = {Visualization and quality assessment of \emph{de novo} genome assemblies},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3425--3426},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr569},
doi = {10.1093/BIOINFORMATICS/BTR569},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Riba-GrognuzKFXW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RibaletSA11,
author = {Francois Ribalet and
David M. Schruth and
E. Virginia Armbrust},
title = {flowPhyto: enabling automated analysis of microscopic algae from continuous
flow cytometric data},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {732--733},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr003},
doi = {10.1093/BIOINFORMATICS/BTR003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RibaletSA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RiddickSAWBZF11,
author = {Gregory Riddick and
Hua Song and
Susie Ahn and
Jennifer Walling and
Diego Borges{-}Rivera and
Wei Zhang and
Howard A. Fine},
title = {Predicting \emph{in vitro} drug sensitivity using Random Forests},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {220--224},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq628},
doi = {10.1093/BIOINFORMATICS/BTQ628},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RiddickSAWBZF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rivas-AstrozaXCZ11,
author = {Marcelo Rivas{-}Astroza and
Dan Xie and
Xiaoyi Cao and
Sheng Zhong},
title = {Mapping personal functional data to personal genomes},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3427--3429},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr578},
doi = {10.1093/BIOINFORMATICS/BTR578},
timestamp = {Wed, 29 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rivas-AstrozaXCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobertsPTP11,
author = {Adam Roberts and
Harold Pimentel and
Cole Trapnell and
Lior Pachter},
title = {Identification of novel transcripts in annotated genomes using RNA-Seq},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2325--2329},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr355},
doi = {10.1093/BIOINFORMATICS/BTR355},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RobertsPTP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodelspergerKBHBBCSR11,
author = {Christian R{\"{o}}delsperger and
Peter M. Krawitz and
Sebastian Bauer and
Jochen Hecht and
Abigail W. Bigham and
Michael Bamshad and
Birgit Jonske de Condor and
Michal R. Schweiger and
Peter N. Robinson},
title = {Identity-by-descent filtering of exome sequence data for disease-gene
identification in autosomal recessive disorders},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {829--836},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr022},
doi = {10.1093/BIOINFORMATICS/BTR022},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RodelspergerKBHBBCSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rodriguez-BaenaPA11,
author = {Domingo S. Rodr{\'{\i}}guez{-}Baena and
Antonio J. P{\'{e}}rez{-}Pulido and
Jes{\'{u}}s S. Aguilar{-}Ruiz},
title = {A biclustering algorithm for extracting bit-patterns from binary datasets},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2738--2745},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr464},
doi = {10.1093/BIOINFORMATICS/BTR464},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rodriguez-BaenaPA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RohnKS11,
author = {Hendrik Rohn and
Christian Klukas and
Falk Schreiber},
title = {Creating views on integrated multidomain data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1839--1845},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr282},
doi = {10.1093/BIOINFORMATICS/BTR282},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RohnKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rojas-ChertoKWVHR11,
author = {Miguel Rojas{-}Chert{\'{o}} and
Piotr T. Kasper and
Egon L. Willighagen and
Rob J. Vreeken and
Thomas Hankemeier and
Theo H. Reijmers},
title = {Elemental composition determination based on MS\({}^{\mbox{\emph{n}}}\)},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2376--2383},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr409},
doi = {10.1093/BIOINFORMATICS/BTR409},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rojas-ChertoKWVHR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RookeY11,
author = {Rebecca Rooke and
Guojun Yang},
title = {{TE} Displayer for post-genomic analysis of transposable elements},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {286--287},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq639},
doi = {10.1093/BIOINFORMATICS/BTQ639},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RookeY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoseHSHBS11,
author = {Dominic Rose and
Michael Hiller and
Katharina Schutt and
J{\"{o}}rg Hackerm{\"{u}}ller and
Rolf Backofen and
Peter F. Stadler},
title = {Computational discovery of human coding and non-coding transcripts
with conserved splice sites},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1894--1900},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr314},
doi = {10.1093/BIOINFORMATICS/BTR314},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoseHSHBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RosenRR11,
author = {Gail L. Rosen and
Erin R. Reichenberger and
Aaron M. Rosenfeld},
title = {{NBC:} the Na{\"{\i}}ve Bayes Classification tool webserver for
taxonomic classification of metagenomic reads},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {127--129},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq619},
doi = {10.1093/BIOINFORMATICS/BTQ619},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RosenRR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RossinLHMP11,
author = {Elizabeth Rossin and
Tsung{-}I Lin and
Hsiu J. Ho and
Steven J. Mentzer and
Saumyadipta Pyne},
title = {A framework for analytical characterization of monoclonal antibodies
based on reactivity profiles in different tissues},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2746--2753},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr468},
doi = {10.1093/BIOINFORMATICS/BTR468},
timestamp = {Wed, 09 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RossinLHMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RotherMPJRB11,
author = {Magdalena Rother and
Kaja Milanowska and
Tomasz Puton and
Jaroslaw Jeleniewicz and
Kristian Rother and
Janusz M. Bujnicki},
title = {ModeRNA server: an online tool for modeling {RNA} 3D structures},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2441--2442},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr400},
doi = {10.1093/BIOINFORMATICS/BTR400},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RotherMPJRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RouxFMPBDE11,
author = {Simon Roux and
Micha{\"{e}}l Faubladier and
Antoine Mahul and
Nils Paulhe and
Aur{\'{e}}lien Bernard and
Didier Debroas and
Fran{\c{c}}ois Enault},
title = {Metavir: a web server dedicated to virome analysis},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3074--3075},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr519},
doi = {10.1093/BIOINFORMATICS/BTR519},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RouxFMPBDE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoyWL11,
author = {Sushmita Roy and
Margaret Werner{-}Washburne and
Terran Lane},
title = {A multiple network learning approach to capture system-wide condition-specific
responses},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1832--1838},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr270},
doi = {10.1093/BIOINFORMATICS/BTR270},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoyWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuffaloLK11,
author = {Matthew Ruffalo and
Thomas LaFramboise and
Mehmet Koyut{\"{u}}rk},
title = {Comparative analysis of algorithms for next-generation sequencing
read alignment},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2790--2796},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr477},
doi = {10.1093/BIOINFORMATICS/BTR477},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuffaloLK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RybergNM11,
author = {Martin Ryberg and
R. Henrik Nilsson and
P. Brandon Matheny},
title = {DivBayes and SubT: exploring species diversification using Bayesian
statistics},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2439--2440},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr405},
doi = {10.1093/BIOINFORMATICS/BTR405},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RybergNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SabbahMPRH11,
author = {Camille Sabbah and
Gildas Mazo and
Caroline Paccard and
Fabien Reyal and
Philippe Hup{\'{e}}},
title = {{SMETHILLIUM:} spatial normalization METHod for ILLumina InfinIUM
HumanMethylation BeadChip},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1693--1695},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr187},
doi = {10.1093/BIOINFORMATICS/BTR187},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SabbahMPRH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SadriDB11,
author = {Javad Sadri and
Abdoulaye Banir{\'{e}} Diallo and
Mathieu Blanchette},
title = {Predicting site-specific human selective pressure using evolutionary
signatures},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {266--274},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr241},
doi = {10.1093/BIOINFORMATICS/BTR241},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SadriDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalesR11,
author = {Gabriele Sales and
Chiara Romualdi},
title = {\emph{parmigene} - a parallel {R} package for mutual information estimation
and gene network reconstruction},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1876--1877},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr274},
doi = {10.1093/BIOINFORMATICS/BTR274},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalesR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalmelaMVYU11,
author = {Leena Salmela and
Veli M{\"{a}}kinen and
Niko V{\"{a}}lim{\"{a}}ki and
Johannes Ylinen and
Esko Ukkonen},
title = {Fast scaffolding with small independent mixed integer programs},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3259--3265},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr562},
doi = {10.1093/BIOINFORMATICS/BTR562},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalmelaMVYU11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalmelaS11,
author = {Leena Salmela and
Jan Schr{\"{o}}der},
title = {Correcting errors in short reads by multiple alignments},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1455--1461},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr170},
doi = {10.1093/BIOINFORMATICS/BTR170},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalmelaS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SamayoaYK11,
author = {Josue Samayoa and
Fitnat H. Yildiz and
Kevin Karplus},
title = {Identification of prokaryotic small proteins using a comparative genomic
approach},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1765--1771},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr275},
doi = {10.1093/BIOINFORMATICS/BTR275},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SamayoaYK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SanaIMPGV11,
author = {Maria Elena Sana and
Maria Iascone and
Daniela Marchetti and
Jeffrey J. T. Palatini and
Marco Galasso and
Stefano Volinia},
title = {{GAMES} identifies and annotates mutations in next-generation sequencing
projects},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {9--13},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq603},
doi = {10.1093/BIOINFORMATICS/BTQ603},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SanaIMPGV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sanchez-PulidoP11,
author = {Luis S{\'{a}}nchez{-}Pulido and
Chris P. Ponting},
title = {Cdc45: the missing RecJ ortholog in eukaryotes?},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1885--1888},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr332},
doi = {10.1093/BIOINFORMATICS/BTR332},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sanchez-PulidoP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SandveFN11,
author = {Geir Kjetil Sandve and
Egil Ferkingstad and
St{\aa}le Nyg{\aa}rd},
title = {Sequential Monte Carlo multiple testing},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3235--3241},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr568},
doi = {10.1093/BIOINFORMATICS/BTR568},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SandveFN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SanftWRFLP11,
author = {Kevin R. Sanft and
Sheng Wu and
Min K. Roh and
Jin Fu and
Rone Kwei Lim and
Linda R. Petzold},
title = {StochKit2: software for discrete stochastic simulation of biochemical
systems with events},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2457--2458},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr401},
doi = {10.1093/BIOINFORMATICS/BTR401},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SanftWRFLP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SankarORGTSXH11,
author = {Martial Sankar and
Karen S. Osmont and
Jakub Rolcik and
Bojan Gujas and
Danuse Tarkowska and
Miroslav Strnad and
Ioannis Xenarios and
Christian S. Hardtke},
title = {A qualitative continuous model of cellular auxin and brassinosteroid
signaling and their crosstalk},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1404--1412},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr158},
doi = {10.1093/BIOINFORMATICS/BTR158},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SankarORGTSXH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SantanaSMFS11,
author = {Filipe Santana and
Daniel Schober and
Zulma Medeiros and
Fred Freitas and
Stefan Schulz},
title = {Ontology patterns for tabular representations of biomedical knowledge
on neglected tropical diseases},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {349--356},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr226},
doi = {10.1093/BIOINFORMATICS/BTR226},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SantanaSMFS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SathirapongsasutiLHBCBQN11,
author = {Jarupon Fah Sathirapongsasuti and
Hane Lee and
Basil A. J. Horst and
Georg Brunner and
Alistair J. Cochran and
Scott Binder and
John Quackenbush and
Stanley F. Nelson},
title = {Exome sequencing-based copy-number variation and loss of heterozygosity
detection: ExomeCNV},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2648--2654},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr462},
doi = {10.1093/BIOINFORMATICS/BTR462},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SathirapongsasutiLHBCBQN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SatoKHAA11,
author = {Kengo Sato and
Yuki Kato and
Michiaki Hamada and
Tatsuya Akutsu and
Kiyoshi Asai},
title = {IPknot: fast and accurate prediction of {RNA} secondary structures
with pseudoknots using integer programming},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {85--93},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr215},
doi = {10.1093/BIOINFORMATICS/BTR215},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SatoKHAA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavojardoFAMPC11,
author = {Castrense Savojardo and
Piero Fariselli and
Monther Alhamdoosh and
Pier Luigi Martelli and
Andrea Pierleoni and
Rita Casadio},
title = {Improving the prediction of disulfide bonds in Eukaryotes with machine
learning methods and protein subcellular localization},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2224--2230},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr387},
doi = {10.1093/BIOINFORMATICS/BTR387},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SavojardoFAMPC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavojardoFC11,
author = {Castrense Savojardo and
Piero Fariselli and
Rita Casadio},
title = {Improving the detection of transmembrane {\(\beta\)}-barrel chains
with N-to-1 extreme learning machines},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3123--3128},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr549},
doi = {10.1093/BIOINFORMATICS/BTR549},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SavojardoFC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavolBARC11,
author = {Andrej J. Savol and
Virginia M. Burger and
Pratul K. Agarwal and
Arvind Ramanathan and
Chakra S. Chennubhotla},
title = {{QAARM:} quasi-anharmonic autoregressive model reveals molecular recognition
pathways in ubiquitin},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {52--60},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr248},
doi = {10.1093/BIOINFORMATICS/BTR248},
timestamp = {Fri, 20 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SavolBARC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaefferJSD11,
author = {R. Dustin Schaeffer and
Amanda L. Jonsson and
Andrew M. Simms and
Valerie Daggett},
title = {Generation of a consensus protein domain dictionary},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {46--54},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq625},
doi = {10.1093/BIOINFORMATICS/BTQ625},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaefferJSD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaffterMF11,
author = {Thomas Schaffter and
Daniel Marbach and
Dario Floreano},
title = {GeneNetWeaver: \emph{in silico} benchmark generation and performance
profiling of network inference methods},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2263--2270},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr373},
doi = {10.1093/BIOINFORMATICS/BTR373},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaffterMF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchleifRBSC11,
author = {Frank{-}Michael Schleif and
T. Riemer and
U. B{\"{o}}rner and
L. Schnapka{-}Hille and
Michael Cross},
title = {Genetic algorithm for shift-uncertainty correction in 1-D NMR-based
metabolite identifications and quantifications},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {524--533},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq661},
doi = {10.1093/BIOINFORMATICS/BTQ661},
timestamp = {Thu, 24 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchleifRBSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Schliep11,
author = {Klaus Peter Schliep},
title = {phangorn: phylogenetic analysis in {R}},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {592--593},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq706},
doi = {10.1093/BIOINFORMATICS/BTQ706},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Schliep11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtkeBLB11,
author = {Peter Schmidtke and
Axel Bidon{-}Chanal and
F. Javier Luque and
Xavier Barril},
title = {MDpocket: open-source cavity detection and characterization on molecular
dynamics trajectories},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3276--3285},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr550},
doi = {10.1093/BIOINFORMATICS/BTR550},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtkeBLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmiederE11,
author = {Robert Schmieder and
Robert A. Edwards},
title = {Quality control and preprocessing of metagenomic datasets},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {863--864},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr026},
doi = {10.1093/BIOINFORMATICS/BTR026},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmiederE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchroderCQH11,
author = {Markus S. Schr{\"{o}}der and
Aed{\'{\i}}n C. Culhane and
John Quackenbush and
Benjamin Haibe{-}Kains},
title = {\emph{survcomp}: an R/Bioconductor package for performance assessment
and comparison of survival models},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3206--3208},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr511},
doi = {10.1093/BIOINFORMATICS/BTR511},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchroderCQH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchroderWWDBBTTZZ11,
author = {Adrian Schr{\"{o}}der and
Johannes Wollnik and
Clemens Wrzodek and
Andreas Dr{\"{a}}ger and
Michael Bonin and
Oliver Burk and
Maria Thomas and
Wolfgang E. Thasler and
Ulrich M. Zanger and
Andreas Zell},
title = {Inferring statin-induced gene regulatory relationships in primary
human hepatocytes},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2473--2477},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr416},
doi = {10.1093/BIOINFORMATICS/BTR416},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchroderWWDBBTTZZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchwarzKZ11,
author = {Daniel F. Schwarz and
Inke R. K{\"{o}}nig and
Andreas Ziegler},
title = {On safari to Random Jungle: a fast implementation of Random Forests
for high-dimensional data},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {439},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr004},
doi = {10.1093/BIOINFORMATICS/BTR004},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchwarzKZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchweigerLL11,
author = {Regev Schweiger and
Michal Linial and
Nathan Linial},
title = {Generative probabilistic models for protein-protein interaction networks
- the biclique perspective},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {142--148},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr201},
doi = {10.1093/BIOINFORMATICS/BTR201},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchweigerLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScornavaccaZH11,
author = {C{\'{e}}line Scornavacca and
Franziska Zickmann and
Daniel H. Huson},
title = {Tanglegrams for rooted phylogenetic trees and networks},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {248--256},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr210},
doi = {10.1093/BIOINFORMATICS/BTR210},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScornavaccaZH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeemannRGBG11,
author = {Stefan E. Seemann and
Andreas S. Richter and
Tanja Gesell and
Rolf Backofen and
Jan Gorodkin},
title = {PETcofold: predicting conserved interactions and structures of two
multiple alignments of {RNA} sequences},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {211--219},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq634},
doi = {10.1093/BIOINFORMATICS/BTQ634},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeemannRGBG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertSSG11,
author = {Michael Seifert and
Marc Strickert and
Alexander Schliep and
Ivo Grosse},
title = {Exploiting prior knowledge and gene distances in the analysis of tumor
expression profiles with extended Hidden Markov Models},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1645--1652},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr199},
doi = {10.1093/BIOINFORMATICS/BTR199},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertSSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SemegniWGHGM11,
author = {J. Y. Semegni and
Mark Wamalwa and
R. Gaujoux and
G. W. Harkins and
A. Gray and
D. P. Martin},
title = {{NASP:} a parallel program for identifying evolutionarily conserved
nucleic acid secondary structures from nucleotide sequence alignments},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2443--2445},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr417},
doi = {10.1093/BIOINFORMATICS/BTR417},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SemegniWGHGM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShaoTVLDB11,
author = {Xiaojian Shao and
Chris Soon Heng Tan and
Courtney Voss and
Shawn S. C. Li and
Naiyang Deng and
Gary D. Bader},
title = {A regression framework incorporating quantitative and negative interaction
data improves quantitative prediction of {PDZ} domain-peptide interaction
from primary sequence},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {383--390},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq657},
doi = {10.1093/BIOINFORMATICS/BTQ657},
timestamp = {Tue, 31 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShaoTVLDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheCUWWC11,
author = {Rong She and
Jeffrey Shih{-}Chieh Chu and
Bora Uyar and
Jun Wang and
Ke Wang and
Nansheng Chen},
title = {genBlastG: using {BLAST} searches to build homologous gene models},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2141--2143},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr342},
doi = {10.1093/BIOINFORMATICS/BTR342},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SheCUWWC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenSP11,
author = {Yufeng Shen and
Ruijie Song and
Itsik Pe'er},
title = {Coverage tradeoffs and power estimation in the design of whole-genome
sequencing experiments for detecting association},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1995--1997},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr305},
doi = {10.1093/BIOINFORMATICS/BTR305},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenWZY11,
author = {Ying Shen and
Hau{-}San Wong and
Shaohong Zhang and
Zhiwen Yu},
title = {Feature-based 3D motif filtering for ribosomal {RNA}},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2828--2835},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr495},
doi = {10.1093/BIOINFORMATICS/BTR495},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenWZY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiZ11,
author = {Mingguang Shi and
Bing Zhang},
title = {Semi-supervised learning improves gene expression-based prediction
of cancer recurrence},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3017--3023},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr502},
doi = {10.1093/BIOINFORMATICS/BTR502},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiehZJCSWT11,
author = {Grace S. Shieh and
Shurong Zheng and
Richard A. Johnson and
Yi{-}Feng Chang and
Kunio Shimizu and
Chia{-}Chang Wang and
Sen{-}Lin Tang},
title = {Modeling and comparing the organization of circular genomes},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {912--918},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr049},
doi = {10.1093/BIOINFORMATICS/BTR049},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiehZJCSWT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShimizuT11,
author = {Kana Shimizu and
Koji Tsuda},
title = {SlideSort: all pairs similarity search for short reads},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {464--470},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq677},
doi = {10.1093/BIOINFORMATICS/BTQ677},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShimizuT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiraishiOM11,
author = {Yuichi Shiraishi and
Mariko Okada{-}Hatakeyama and
Satoru Miyano},
title = {A rank-based statistical test for measuring synergistic effects between
two gene sets},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2399--2405},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr382},
doi = {10.1093/BIOINFORMATICS/BTR382},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiraishiOM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShirleyTTLG11,
author = {James W. Shirley and
Sereyvathana Ty and
Shin{-}ichiro Takebayashi and
Xiuwen Liu and
David M. Gilbert},
title = {{FISH} Finder: a high-throughput tool for analyzing {FISH} images},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {933--938},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr053},
doi = {10.1093/BIOINFORMATICS/BTR053},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShirleyTTLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShirvanyantsAD11,
author = {David Shirvanyants and
Anastassia N. Alexandrova and
Nikolay V. Dokholyan},
title = {Rigid substructure search},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1327--1329},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr129},
doi = {10.1093/BIOINFORMATICS/BTR129},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShirvanyantsAD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShivashankarSRT11,
author = {S. Shivashankar and
S. Srivathsan and
Balaraman Ravindran and
Ashish V. Tendulkar},
title = {Multi-view methods for protein structure comparison using latent dirichlet
allocation},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {61--68},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr249},
doi = {10.1093/BIOINFORMATICS/BTR249},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShivashankarSRT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShringarpureWX11,
author = {Suyash Shringarpure and
Daegun Won and
Eric P. Xing},
title = {StructHDP: automatic inference of number of clusters and population
structure from admixed genotype data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {324--332},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr242},
doi = {10.1093/BIOINFORMATICS/BTR242},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShringarpureWX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShuE11,
author = {Nanjiang Shu and
Arne Elofsson},
title = {KalignP: Improved multiple sequence alignments using position specific
gap penalties in Kalign2},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1702--1703},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr235},
doi = {10.1093/BIOINFORMATICS/BTR235},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShuE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiddleGKS11,
author = {K. J. Siddle and
Judith A. Goodship and
Bernard D. Keavney and
Mauro F. Santibanez{-}Koref},
title = {Bases adjacent to mononucleotide repeats show an increased single
nucleotide polymorphism frequency in the human genome},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {895--898},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr067},
doi = {10.1093/BIOINFORMATICS/BTR067},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SiddleGKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiederdissenBSH11,
author = {Christian H{\"{o}}ner zu Siederdissen and
Stephan H. Bernhart and
Peter F. Stadler and
Ivo L. Hofacker},
title = {A folding algorithm for extended {RNA} secondary structures},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {129--136},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr220},
doi = {10.1093/BIOINFORMATICS/BTR220},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SiederdissenBSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SillKBK11,
author = {Martin Sill and
Sebastian Kaiser and
Axel Benner and
Annette Kopp{-}Schneider},
title = {Robust biclustering by sparse singular value decomposition incorporating
stability selection},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2089--2097},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr322},
doi = {10.1093/BIOINFORMATICS/BTR322},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SillKBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilvaWDBMM11,
author = {A. Sofia Silva and
Shona H. Wood and
Sipko van Dam and
Sven Berres and
Anne McArdle and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es},
title = {Gathering insights on disease etiology from gene expression profiles
of healthy tissues},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3300--3305},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr559},
doi = {10.1093/BIOINFORMATICS/BTR559},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SilvaWDBMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimaBD11,
author = {Chao Sima and
Ulisses M. Braga{-}Neto and
Edward R. Dougherty},
title = {High-dimensional bolstered error estimation},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3056--3064},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr518},
doi = {10.1093/BIOINFORMATICS/BTR518},
timestamp = {Fri, 24 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimaBD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SinghOHJLCLP11,
author = {Darshan Singh and
Christian F. Orellana and
Yin Hu and
Corbin D. Jones and
Yufeng Liu and
Derek Y. Chiang and
Jinze Liu and
Jan F. Prins},
title = {{FDM:} a graph-based statistical method to detect differential transcription
using RNA-seq data},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2633--2640},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr458},
doi = {10.1093/BIOINFORMATICS/BTR458},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SinghOHJLCLP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SivriverHF11,
author = {Julia Sivriver and
Naomi Habib and
Nir Friedman},
title = {An integrative clustering and modeling algorithm for dynamical gene
expression data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {392--400},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr250},
doi = {10.1093/BIOINFORMATICS/BTR250},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SivriverHF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmetM11,
author = {Riet De Smet and
Kathleen Marchal},
title = {An ensemble biclustering approach for querying gene expression compendia
with experimental lists},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1948--1956},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr307},
doi = {10.1093/BIOINFORMATICS/BTR307},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmetM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmootOIM11,
author = {Michael E. Smoot and
Keiichiro Ono and
Trey Ideker and
Steven Maere},
title = {PiNGO: a Cytoscape plugin to find candidate genes in biological networks},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1030--1031},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr045},
doi = {10.1093/BIOINFORMATICS/BTR045},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmootOIM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmootORWI11,
author = {Michael E. Smoot and
Keiichiro Ono and
Johannes Ruscheinski and
Peng{-}Liang Wang and
Trey Ideker},
title = {Cytoscape 2.8: new features for data integration and network visualization},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {431--432},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq675},
doi = {10.1093/BIOINFORMATICS/BTQ675},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmootORWI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoltisS11,
author = {Anthony R. Soltis and
Jeffrey J. Saucerman},
title = {Robustness portraits of diverse biological networks conserved despite
order-of-magnitude parameter uncertainty},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2888--2894},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr496},
doi = {10.1093/BIOINFORMATICS/BTR496},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoltisS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongL11,
author = {Xin{-}Yuan Song and
Zhaohua Lu},
title = {Response to "Comments on 'Bayesian variable selection for disease
classification using gene expression data'"},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2169--2170},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr334},
doi = {10.1093/BIOINFORMATICS/BTR334},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongS11,
author = {Qiang Song and
Andrew D. Smith},
title = {Identifying dispersed epigenomic domains from ChIP-Seq data},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {870--871},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr030},
doi = {10.1093/BIOINFORMATICS/BTR030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SouthernG11,
author = {Mark R. Southern and
Patrick R. Griffin},
title = {A Java {API} for working with PubChem datasets},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {741--742},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq715},
doi = {10.1093/BIOINFORMATICS/BTQ715},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SouthernG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpangenbergBGNN11,
author = {Luc{\'{\i}}a Spangenberg and
Florian Battke and
Mart{\'{\i}} Gra{\~{n}}a and
Kay Nieselt and
Hugo Naya},
title = {Identifying associations between amino acid changes and meta information
in alignments},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2782--2789},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr476},
doi = {10.1093/BIOINFORMATICS/BTR476},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpangenbergBGNN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpechtKFH11,
author = {Michael Specht and
Sebastian Kuhlgert and
Christian Fufezan and
Michael Hippler},
title = {Proteomics to go: Proteomatic enables the user-friendly creation of
versatile {MS/MS} data evaluation workflows},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1183--1184},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr081},
doi = {10.1093/BIOINFORMATICS/BTR081},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpechtKFH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpirinSSGSGS11,
author = {Victor Spirin and
Alexander Shpunt and
Jan Seebacher and
Marc Gentzel and
Andrej Shevchenko and
Steven Gygi and
Shamil R. Sunyaev},
title = {Assigning spectrum-specific \emph{P}-values to protein identifications
by mass spectrometry},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1128--1134},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr089},
doi = {10.1093/BIOINFORMATICS/BTR089},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpirinSSGSGS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpjuthELJW11,
author = {Ola Spjuth and
Martin Eklund and
Maris Lapins and
Muhammad Junaid and
Jarl E. S. Wikberg},
title = {Services for prediction of drug susceptibility for {HIV} proteases
and reverse transcriptases at the {HIV} drug research centre},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1719--1720},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr192},
doi = {10.1093/BIOINFORMATICS/BTR192},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpjuthELJW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SrokaKKT11,
author = {Jacek Sroka and
Lukasz Krupa and
Andrzej M. Kierzek and
Jerzy Tyszkiewicz},
title = {\emph{CalcTav} - integration of a spreadsheet and \emph{Taverna} workbench},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2618--2619},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr425},
doi = {10.1093/BIOINFORMATICS/BTR425},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SrokaKKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StamoulisB11,
author = {Catherine Stamoulis and
Rebecca A. Betensky},
title = {A novel signal processing approach for the detection of copy number
variations in the human genome},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2338--2345},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr402},
doi = {10.1093/BIOINFORMATICS/BTR402},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StamoulisB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteadWW11,
author = {Lucy F. Stead and
I. C. Wood and
David R. Westhead},
title = {KvSNP: accurately predicting the effect of genetic variants in voltage-gated
potassium channels},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2181--2186},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr365},
doi = {10.1093/BIOINFORMATICS/BTR365},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteadWW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StingoV11,
author = {Francesco C. Stingo and
Marina Vannucci},
title = {Variable selection for discriminant analysis with Markov random field
priors for the analysis of microarray data},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {495--501},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq690},
doi = {10.1093/BIOINFORMATICS/BTQ690},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StingoV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StivalaWWWS11,
author = {Alex D. Stivala and
Michael Wybrow and
Anthony Wirth and
James C. Whisstock and
Peter J. Stuckey},
title = {Automatic generation of protein structure cartoons with Pro-origami},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3315--3316},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr575},
doi = {10.1093/BIOINFORMATICS/BTR575},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StivalaWWWS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StombaughWMK11,
author = {Jesse Stombaugh and
Jeremy Widmann and
Daniel McDonald and
Rob Knight},
title = {Boulder ALignment Editor {(ALE):} a web-based {RNA} alignment tool},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1706--1707},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr258},
doi = {10.1093/BIOINFORMATICS/BTR258},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StombaughWMK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StrozziA11,
author = {Francesco Strozzi and
Jan Aerts},
title = {A Ruby {API} to query the Ensembl database for genomic features},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1013--1014},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr050},
doi = {10.1093/BIOINFORMATICS/BTR050},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StrozziA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuHWCCWKWT11,
author = {Chien{-}Hao Su and
Ming{-}Tsung Hsu and
Tse{-}Yi Wang and
Sufeng Chiang and
Jen{-}Hao Cheng and
Francis C. Weng and
Cheng{-}Yan Kao and
Daryi Wang and
Huai{-}Kuang Tsai},
title = {MetaABC - an integrated metagenomics platform for data adjustment,
binning and clustering},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2298--2299},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr376},
doi = {10.1093/BIOINFORMATICS/BTR376},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuHWCCWKWT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuMD11,
author = {Zhan Su and
Jonathan Marchini and
Peter Donnelly},
title = {{HAPGEN2:} simulation of multiple disease SNPs},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2304--2305},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr341},
doi = {10.1093/BIOINFORMATICS/BTR341},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuMD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SullivanPB11,
author = {Mitchell J. Sullivan and
Nicola K. Petty and
Scott A. Beatson},
title = {Easyfig: a genome comparison visualizer},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1009--1010},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr039},
doi = {10.1093/BIOINFORMATICS/BTR039},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SullivanPB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunLHTR11,
author = {He Quan Sun and
Malcolm Yoke Hean Low and
Wen{-}Jing Hsu and
Ching{-}Wai Tan and
Jagath C. Rajapakse},
title = {Tree-structured algorithm for long weak motif discovery},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2641--2647},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr459},
doi = {10.1093/BIOINFORMATICS/BTR459},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunLHTR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwamidassCBBC11,
author = {Sanjay Joshua Swamidass and
Bradley T. Calhoun and
Joshua A. Bittker and
Nicole E. Bodycombe and
Paul A. Clemons},
title = {Enhancing the rate of scaffold discovery with diversity-oriented prioritization},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2271--2278},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr369},
doi = {10.1093/BIOINFORMATICS/BTR369},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwamidassCBBC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SymonsN11,
author = {Stephan Symons and
Kay Nieselt},
title = {{MGV:} a generic graph viewer for comparative omics data},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2248--2255},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr351},
doi = {10.1093/BIOINFORMATICS/BTR351},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SymonsN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaKH11,
author = {Hung Xuan Ta and
Patrik Koskinen and
Liisa Holm},
title = {A novel method for assigning functional linkages to proteins using
enhanced phylogenetic trees},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {700--706},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq705},
doi = {10.1093/BIOINFORMATICS/BTQ705},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaKH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaferAESH11,
author = {Hakim Tafer and
Fabian Amman and
Florian Eggenhofer and
Peter F. Stadler and
Ivo L. Hofacker},
title = {Fast accessibility-based prediction of {RNA-RNA} interactions},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1934--1940},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr281},
doi = {10.1093/BIOINFORMATICS/BTR281},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaferAESH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TamadaYIHYNM11,
author = {Yoshinori Tamada and
Rui Yamaguchi and
Seiya Imoto and
Osamu Hirose and
Ryo Yoshida and
Masao Nagasaki and
Satoru Miyano},
title = {SiGN-SSM: open source parallel software for estimating gene networks
with state space models},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1172--1173},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr078},
doi = {10.1093/BIOINFORMATICS/BTR078},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TamadaYIHYNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaminauSCMLSDMBNS11,
author = {Jonatan Taminau and
David Steenhoff and
Alain Coletta and
Stijn Meganck and
Cosmin Lazar and
Virginie de Schaetzen and
Robin Duque and
Colin Molter and
Hugues Bersini and
Ann Now{\'{e}} and
David Y. Weiss Sol{\'{\i}}s},
title = {inSilicoDb: an R/Bioconductor package for accessing human Affymetrix
expert-curated datasets from {GEO}},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3204--3205},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr529},
doi = {10.1093/BIOINFORMATICS/BTR529},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaminauSCMLSDMBNS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TamiolaM11,
author = {Kamil Tamiola and
Frans A. A. Mulder},
title = {ncIDP-assign: a {SPARKY} extension for the effective {NMR} assignment
of intrinsically disordered proteins},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1039--1040},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr054},
doi = {10.1093/BIOINFORMATICS/BTR054},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TamiolaM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanTD11,
author = {Alan Tan and
Ben W. Tripp and
Denise Daley},
title = {{BRISK} - research-oriented storage kit for biology-related data},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2422--2425},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr389},
doi = {10.1093/BIOINFORMATICS/BTR389},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanTD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanakaBGNK11,
author = {Emi Tanaka and
Timothy L. Bailey and
Charles E. Grant and
William Stafford Noble and
Uri Keich},
title = {Improved similarity scores for comparing motifs},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1603--1609},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr257},
doi = {10.1093/BIOINFORMATICS/BTR257},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanakaBGNK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaslimHL11,
author = {Cenny Taslim and
Tim Hui{-}Ming Huang and
Shili Lin},
title = {{DIME:} R-package for identifying differential ChIP-seq based on an
ensemble of mixture models},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1569--1570},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr165},
doi = {10.1093/BIOINFORMATICS/BTR165},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaslimHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeschendorffZW11,
author = {Andrew E. Teschendorff and
Joanna Zhuang and
Martin Widschwendter},
title = {Independent surrogate variable analysis to deconvolve confounding
factors in large-scale microarray profiling studies},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1496--1505},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr171},
doi = {10.1093/BIOINFORMATICS/BTR171},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeschendorffZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThiemeGLT11,
author = {Christoph J. Thieme and
Lydia Gramzow and
Dajana Lobbes and
G{\"{u}}nter Thei{\ss}en},
title = {SplamiR - prediction of spliced miRNAs in plants},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1215--1223},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr132},
doi = {10.1093/BIOINFORMATICS/BTR132},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThiemeGLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThilakarathneCLSKTVV11,
author = {Pushpike Jayantha Thilakarathne and
Lieven Clement and
Dan Lin and
Ziv Shkedy and
Adetayo Kasim and
Willem Talloen and
Matthias Versele and
Geert Verbeke},
title = {The use of semiparametric mixed models to analyze PamChip\({}^{\mbox{{\textregistered}}}\)
peptide array data: an application to an oncology experiment},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2859--2865},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr475},
doi = {10.1093/BIOINFORMATICS/BTR475},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThilakarathneCLSKTVV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThorleifssonT11,
author = {Stefan Gretar Thorleifsson and
Ines Thiele},
title = {rBioNet: {A} {COBRA} toolbox extension for \emph{r}econstructing high-quality
\emph{bio}chemical \emph{net}works},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2009--2010},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr308},
doi = {10.1093/BIOINFORMATICS/BTR308},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThorleifssonT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TolosiL11,
author = {Laura Tolosi and
Thomas Lengauer},
title = {Classification with correlated features: unreliability of feature
ranking and solutions},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {1986--1994},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr300},
doi = {10.1093/BIOINFORMATICS/BTR300},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TolosiL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongCK11,
author = {Mark Y. Tong and
Christopher A. Cassa and
Isaac S. Kohane},
title = {Automated validation of genetic variants from large databases: ensuring
that variant references refer to the same genomic locations},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {891--893},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr029},
doi = {10.1093/BIOINFORMATICS/BTR029},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongCK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongWZSW11,
author = {Chunfa Tong and
Zhong Wang and
Bo Zhang and
Jisen Shi and
Rongling Wu},
title = {3FunMap: full-sib family functional mapping of dynamic traits},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2006--2008},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr306},
doi = {10.1093/BIOINFORMATICS/BTR306},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongWZSW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TroshinPB11,
author = {Peter V. Troshin and
James B. Procter and
Geoffrey J. Barton},
title = {Java bioinformatics analysis web services for multiple sequence alignment
- {JABAWS:} {MSA}},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2001--2002},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr304},
doi = {10.1093/BIOINFORMATICS/BTR304},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TroshinPB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrostK11,
author = {Brett Trost and
Anthony J. Kusalik},
title = {Computational prediction of eukaryotic phosphorylation sites},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2927--2935},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr525},
doi = {10.1093/BIOINFORMATICS/BTR525},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrostK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsafnatSCIPC11,
author = {Guy Tsafnat and
Jaron Schaeffer and
Andrew Clayphan and
Jonathan R. Iredell and
Sally R. Partridge and
Enrico W. Coiera},
title = {Computational inference of grammars for larger-than-gene structures
from annotated gene sequences},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {791--796},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr036},
doi = {10.1093/BIOINFORMATICS/BTR036},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsafnatSCIPC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsuruokaMHTA11,
author = {Yoshimasa Tsuruoka and
Makoto Miwa and
Kaisei Hamamoto and
Jun'ichi Tsujii and
Sophia Ananiadou},
title = {Discovering and visualizing indirect associations between biomedical
concepts},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {111--119},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr214},
doi = {10.1093/BIOINFORMATICS/BTR214},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsuruokaMHTA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VangoneSSCO11,
author = {Anna Vangone and
Raffaele Spinelli and
Vittorio Scarano and
Luigi Cavallo and
Romina Oliva},
title = {{COCOMAPS:} a web application to analyze and visualize contacts at
the interface of biomolecular complexes},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2915--2916},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr484},
doi = {10.1093/BIOINFORMATICS/BTR484},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VangoneSSCO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VehlowSWDPDL11,
author = {Corinna Vehlow and
Henning Stehr and
Matthias Winkelmann and
Jose M. Duarte and
Lars Petzold and
Juliane Dinse and
Michael Lappe},
title = {CMView: Interactive contact map visualization and analysis},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1573--1574},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr163},
doi = {10.1093/BIOINFORMATICS/BTR163},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VehlowSWDPDL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VensRD11,
author = {Celine Vens and
Marie{-}No{\"{e}}lle Rosso and
Etienne G. J. Danchin},
title = {Identifying discriminative classification-based motifs in biological
sequences},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1231--1238},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr110},
doi = {10.1093/BIOINFORMATICS/BTR110},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VensRD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VigeliusLM11,
author = {Matthias Vigelius and
Aidan Lane and
Bernd Meyer},
title = {Accelerating reaction-diffusion simulations with general-purpose graphics
processing units},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {288--290},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq622},
doi = {10.1093/BIOINFORMATICS/BTQ622},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VigeliusLM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VignesBLF11,
author = {Matthieu Vignes and
Juliette Blanchet and
Damien Leroux and
Florence Forbes},
title = {SpaCEM\({}^{\mbox{3}}\): a software for biological module detection
when data is incomplete, high dimensional and dependent},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {881--882},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr034},
doi = {10.1093/BIOINFORMATICS/BTR034},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VignesBLF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VillavecesJGSGMMCH11,
author = {Jose M. Villaveces and
Rafael C. Jim{\'{e}}nez and
Leyla J. Garc{\'{\i}}a and
Gustavo A. Salazar and
Bernat Gel and
Nicola J. Mulder and
Maria Jesus Martin and
Alexander Garc{\'{\i}}a Castro and
Henning Hermjakob},
title = {Dasty3, a {WEB} framework for {DAS}},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2616--2617},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr433},
doi = {10.1093/BIOINFORMATICS/BTR433},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VillavecesJGSGMMCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VinhCCW11,
author = {Xuan Vinh Nguyen and
Madhu Chetty and
Ross L. Coppel and
Pramod P. Wangikar},
title = {GlobalMIT: learning globally optimal dynamic bayesian network with
the mutual information test criterion},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2765--2766},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr457},
doi = {10.1093/BIOINFORMATICS/BTR457},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VinhCCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VossHRLKKH11,
author = {Bj{\"{o}}rn Voss and
Michael Hanselmann and
Bernhard Y. Renard and
Martin S. Lindner and
Ullrich K{\"{o}}the and
Marc Kirchner and
Fred A. Hamprecht},
title = {{SIMA:} Simultaneous Multiple Alignment of {LC/MS} Peak Lists},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {987--993},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr051},
doi = {10.1093/BIOINFORMATICS/BTR051},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VossHRLKKH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VouzisS11,
author = {Panagiotis D. Vouzis and
Nikolaos V. Sahinidis},
title = {{GPU-BLAST:} using graphics processors to accelerate protein sequence
alignment},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {182--188},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq644},
doi = {10.1093/BIOINFORMATICS/BTQ644},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VouzisS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WainrebWADB11,
author = {Gilad Wainreb and
Lior Wolf and
Haim Ashkenazy and
Yves Dehouck and
Nir Ben{-}Tal},
title = {Protein stability: a single recorded mutation aids in predicting the
effects of other mutations in the same amino acid site},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3286--3292},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr576},
doi = {10.1093/BIOINFORMATICS/BTR576},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WainrebWADB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaldronPTSHJ11,
author = {Levi Waldron and
Melania Pintilie and
Ming{-}Sound Tsao and
Frances A. Shepherd and
Curtis Huttenhower and
Igor Jurisica},
title = {Optimized application of penalized regression methods to diverse genomic
data},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3399--3406},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr591},
doi = {10.1093/BIOINFORMATICS/BTR591},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaldronPTSHJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalenzF11,
author = {Brian Walenz and
Liliana Florea},
title = {Sim4db and Leaff: utilities for fast batch spliced alignment and sequence
indexing},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1869--1870},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr285},
doi = {10.1093/BIOINFORMATICS/BTR285},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalenzF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalterNW11,
author = {Vonn Walter and
Andrew B. Nobel and
Fred A. Wright},
title = {DiNAMIC: a method to identify recurrent {DNA} copy number aberrations
in tumors},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {678--685},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq717},
doi = {10.1093/BIOINFORMATICS/BTQ717},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalterNW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaltersCLBFK11,
author = {William A. Walters and
J. Gregory Caporaso and
Christian L. Lauber and
Donna Berg{-}Lyons and
Noah Fierer and
Rob Knight},
title = {PrimerProspector: \emph{de novo} design and taxonomic analysis of
barcoded polymerase chain reaction primers},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1159--1161},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr087},
doi = {10.1093/BIOINFORMATICS/BTR087},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaltersCLBFK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCKT11,
author = {Hei{-}Chia Wang and
Yi{-}Hsiu Chen and
Hung{-}Yu Kao and
Shaw{-}Jenq Tsai},
title = {Inference of transcriptional regulatory network by bootstrapping patterns},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1422--1428},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr155},
doi = {10.1093/BIOINFORMATICS/BTR155},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangEC11,
author = {Zheng Wang and
Jesse Eickholt and
Jianlin Cheng},
title = {{APOLLO:} a quality assessment service for single and multiple protein
models},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1715--1716},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr268},
doi = {10.1093/BIOINFORMATICS/BTR268},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangEC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangJWCGAZ11,
author = {Lily Wang and
Peilin Jia and
Russell D. Wolfinger and
Xi Chen and
Britney L. Grayson and
Thomas M. Aune and
Zhongming Zhao},
title = {An efficient hierarchical generalized linear mixed model for pathway
analysis of genome-wide association studies},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {686--692},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq728},
doi = {10.1093/BIOINFORMATICS/BTQ728},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangJWCGAZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLCA11,
author = {Ruiqi Wang and
Kaihui Liu and
Luonan Chen and
Kazuyuki Aihara},
title = {Neural fate decisions mediated by \emph{trans}-activation and \emph{cis}-inhibition
in Notch signaling},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3158--3165},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr551},
doi = {10.1093/BIOINFORMATICS/BTR551},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLCA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLFW11,
author = {Yue Wang and
Guimei Liu and
Mengling Feng and
Limsoon Wong},
title = {An empirical comparison of several recent epistatic interaction detection
methods},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2936--2943},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr512},
doi = {10.1093/BIOINFORMATICS/BTR512},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLFW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMBDFTA11,
author = {Xinglong Wang and
Iain McKendrick and
Ian Barrett and
Ian Dix and
Tim French and
Jun'ichi Tsujii and
Sophia Ananiadou},
title = {Automatic extraction of angiogenesis bioprocess from text},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2730--2737},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr460},
doi = {10.1093/BIOINFORMATICS/BTR460},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMBDFTA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMMLSCCYWEKDC11,
author = {Ying Wang and
Gaurang Mehta and
Rajiv Mayani and
Jingxi Lu and
Tade Souaiaia and
Yangho Chen and
Andrew P. Clark and
Hee Jae Yoon and
Lin Wan and
Oleg V. Evgrafov and
James A. Knowles and
Ewa Deelman and
Ting Chen},
title = {RseqFlow: workflows for RNA-Seq data analysis},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2598--2600},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr441},
doi = {10.1093/BIOINFORMATICS/BTR441},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMMLSCCYWEKDC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangPX11,
author = {Sheng Wang and
Jian Peng and
Jinbo Xu},
title = {Alignment of distantly related protein structures: algorithm, bound
and implications to homology modeling},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2537--2545},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr432},
doi = {10.1093/BIOINFORMATICS/BTR432},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangPX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangST11,
author = {Tse{-}Yi Wang and
Chien{-}Hao Su and
Huai{-}Kuang Tsai},
title = {MetaRank: a rank conversion scheme for comparative analysis of microbial
community compositions},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3341--3347},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr583},
doi = {10.1093/BIOINFORMATICS/BTR583},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangST11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangSZYLLLLL11,
author = {Qianghu Wang and
Jie Sun and
Meng Zhou and
Haixiu Yang and
Yan Li and
Xiang Li and
Sali Lv and
Xia Li and
Yixue Li},
title = {A novel network-based method for measuring the functional relationship
between gene sets},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1521--1528},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr154},
doi = {10.1093/BIOINFORMATICS/BTR154},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangSZYLLLLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangTRM11,
author = {Xin Wang and
Camille Terfve and
John C. Rose and
Florian Markowetz},
title = {HTSanalyzeR: an R/Bioconductor package for integrated network analysis
of high-throughput screens},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {879--880},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr028},
doi = {10.1093/BIOINFORMATICS/BTR028},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangTRM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangTT11,
author = {Hong{-}Qiang Wang and
Lindsey K. Tuominen and
Chung{-}Jui Tsai},
title = {{SLIM:} a sliding linear model for estimating the proportion of true
null hypotheses in datasets with dependence structures},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {225--231},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq650},
doi = {10.1093/BIOINFORMATICS/BTQ650},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangTT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWB11,
author = {Kai Wang and
Rasmus Wernersson and
S{\o}ren Brunak},
title = {The strength of intron donor splice sites in human genes displays
a bell-shaped pattern},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3079--3084},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr532},
doi = {10.1093/BIOINFORMATICS/BTR532},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWTWA11,
author = {Zhengkui Wang and
Yue Wang and
Kian{-}Lee Tan and
Limsoon Wong and
Divyakant Agrawal},
title = {\emph{eCEO}: an efficient Cloud Epistasis cOmputing model in genome-wide
association study},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1045--1051},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr091},
doi = {10.1093/BIOINFORMATICS/BTR091},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWTWA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWX11,
author = {Bin Wang and
Xiao{-}Feng Wang and
Yaguang Xi},
title = {Normalizing bead-based microRNA expression data: a measurement error
model-based approach},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1506--1512},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr180},
doi = {10.1093/BIOINFORMATICS/BTR180},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangX11,
author = {Zhiyong Wang and
Jinbo Xu},
title = {A conditional random fields method for {RNA} sequence-structure relationship
modeling and conformation sampling},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {102--110},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr232},
doi = {10.1093/BIOINFORMATICS/BTR232},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZQCELL11,
author = {Xuexia Wang and
Xiaofeng Zhu and
Huaizhen Qin and
Richard S. Cooper and
Warren J. Ewens and
Chun Li and
Mingyao Li},
title = {Adjustment for local ancestry in genetic association analysis of admixed
populations},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {670--677},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq709},
doi = {10.1093/BIOINFORMATICS/BTQ709},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZQCELL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZSG11,
author = {Yejun Wang and
Qing Zhang and
Ming{-}an Sun and
Dianjing Guo},
title = {High-accuracy prediction of bacterial type {III} secreted effectors
based on position-specific amino acid composition profiles},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {777--784},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr021},
doi = {10.1093/BIOINFORMATICS/BTR021},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiAL11,
author = {Donglai Wei and
Lauren V. Alpert and
Charles E. Lawrence},
title = {{RNAG:} a new Gibbs sampler for predicting {RNA} secondary structure
for unaligned sequences},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2486--2493},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr421},
doi = {10.1093/BIOINFORMATICS/BTR421},
timestamp = {Mon, 27 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiAL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeilePCLDHWLHW11,
author = {Jochen Weile and
Matthew R. Pocock and
Simon J. Cockell and
Phillip W. Lord and
James M. Dewar and
Eva{-}Maria Holstein and
Darren J. Wilkinson and
David A. Lydall and
Jennifer Hallinan and
Anil Wipat},
title = {Customizable views on semantically integrated networks for systems
biology},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1299--1306},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr134},
doi = {10.1093/BIOINFORMATICS/BTR134},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeilePCLDHWLHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WendlWLKMWD11,
author = {Michael C. Wendl and
John W. Wallis and
Ling Lin and
Cyriac Kandoth and
Elaine R. Mardis and
Richard K. Wilson and
Li Ding},
title = {PathScan: a tool for discerning mutational significance in groups
of putative cancer genes},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1595--1602},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr193},
doi = {10.1093/BIOINFORMATICS/BTR193},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WendlWLKMWD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WengL11,
author = {Meng{-}Pin Weng and
Ben{-}Yang Liao},
title = {\emph{Dro}PhEA: \emph{Drosophila} phenotype enrichment analysis for
insect functional genomics},
journal = {Bioinform.},
volume = {27},
number = {22},
pages = {3218--3219},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr530},
doi = {10.1093/BIOINFORMATICS/BTR530},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WengL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WestraJFMHWF11,
author = {Harm{-}Jan Westra and
Ritsert C. Jansen and
Rudolf S. N. Fehrmann and
Gerard J. te Meerman and
David van Heel and
Cisca Wijmenga and
Lude Franke},
title = {MixupMapper: correcting sample mix-ups in genome-wide datasets increases
power to detect small genetic effects},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2104--2111},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr323},
doi = {10.1093/BIOINFORMATICS/BTR323},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WestraJFMHWF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhiteH11,
author = {W. Timothy J. White and
Barbara R. Holland},
title = {Faster exact maximum parsimony search with {XMP}},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1359--1367},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr147},
doi = {10.1093/BIOINFORMATICS/BTR147},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhiteH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WieringenV11,
author = {Wessel N. van Wieringen and
Aad van der Vaart},
title = {Statistical analysis of the cancer cell's molecular entropy using
high-throughput data},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {556--563},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq704},
doi = {10.1093/BIOINFORMATICS/BTQ704},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WieringenV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WillingHKWD11,
author = {Eva{-}Maria Willing and
Margarete Hoffmann and
Juliane D. Klein and
Detlef Weigel and
Christine Dreyer},
title = {Paired-end RAD-seq for \emph{de novo} assembly and marker design without
available reference},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2187--2193},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr346},
doi = {10.1093/BIOINFORMATICS/BTR346},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WillingHKWD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WinterWT11,
author = {Andrew G. Winter and
Jan Wildenhain and
Mike Tyers},
title = {BioGRID {REST} Service, BiogridPlugin2 and BioGRID WebGraph: new tools
for access to interaction data at BioGRID},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1043--1044},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr062},
doi = {10.1093/BIOINFORMATICS/BTR062},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WinterWT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WolstencroftOHKMSPG11,
author = {Katy Wolstencroft and
Stuart Owen and
Matthew Horridge and
Olga Krebs and
Wolfgang M{\"{u}}ller and
Jacky L. Snoep and
Franco B. du Preez and
Carole A. Goble},
title = {RightField: embedding ontology annotation in spreadsheets},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2021--2022},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr312},
doi = {10.1093/BIOINFORMATICS/BTR312},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WolstencroftOHKMSPG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongKCDRK11,
author = {Wing Chung Wong and
Dewey Kim and
Hannah Carter and
Mark Diekhans and
Michael C. Ryan and
Rachel Karchin},
title = {{CHASM} and SNVBox: toolkit for detecting biologically important single
nucleotide mutations in cancer},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2147--2148},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr357},
doi = {10.1093/BIOINFORMATICS/BTR357},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongKCDRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongWHCHLY11,
author = {Thomas K. F. Wong and
Kwok{-}Lung Wan and
Bay{-}Yuan Hsu and
Brenda W. Y. Cheung and
Wing{-}Kai Hon and
Tak Wah Lam and
Siu{-}Ming Yiu},
title = {RNASAlign: {RNA} Structural Alignment System},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2151--2152},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr338},
doi = {10.1093/BIOINFORMATICS/BTR338},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongWHCHLY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WooLS11,
author = {Sangsoon Woo and
Jeffrey T. Leek and
John D. Storey},
title = {A computationally efficient modular optimal discovery procedure},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {509--515},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq701},
doi = {10.1093/BIOINFORMATICS/BTQ701},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WooLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WoodXPCG11,
author = {David L. A. Wood and
Qinying Xu and
John V. Pearson and
Nicole Cloonan and
Sean M. Grimmond},
title = {{X-MATE:} a flexible system for mapping short read data},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {580--581},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq698},
doi = {10.1093/BIOINFORMATICS/BTQ698},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WoodXPCG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WozniakWT11,
author = {Michal Wozniak and
Limsoon Wong and
Jerzy Tiuryn},
title = {CAMBerVis: visualization software to support comparative analysis
of multiple bacterial strains},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3313--3314},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr561},
doi = {10.1093/BIOINFORMATICS/BTR561},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WozniakWT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wren11,
author = {Jonathan D. Wren},
title = {Question answering systems in biology and medicine - the time is now},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2025--2026},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr327},
doi = {10.1093/BIOINFORMATICS/BTR327},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wren11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WrzodekDZ11,
author = {Clemens Wrzodek and
Andreas Dr{\"{a}}ger and
Andreas Zell},
title = {KEGGtranslator: visualizing and converting the {KEGG} {PATHWAY} database
to various formats},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2314--2315},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr377},
doi = {10.1093/BIOINFORMATICS/BTR377},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WrzodekDZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuASMKZ11,
author = {Jie Wu and
Martin Akerman and
Shuying Sun and
W. Richard McCombie and
Adrian R. Krainer and
Michael Q. Zhang},
title = {SpliceTrap: a method to quantify alternative splicing under single
cellular conditions},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3010--3016},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr508},
doi = {10.1093/BIOINFORMATICS/BTR508},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuASMKZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuLC11,
author = {Chih{-}Hung Wu and
Hsiao{-}Ching Lee and
Bor{-}Sen Chen},
title = {Robust synthetic gene network design via library-based search method},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2700--2706},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr465},
doi = {10.1093/BIOINFORMATICS/BTR465},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuWZ11,
author = {Zhengpeng Wu and
Xi Wang and
Xuegong Zhang},
title = {Using non-uniform read distribution models to improve isoform expression
inference in RNA-Seq},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {502--508},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq696},
doi = {10.1093/BIOINFORMATICS/BTQ696},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuWZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaHD11,
author = {Tian Xia and
John L. Van Hemert and
Julie A. Dickerson},
title = {CytoModeler: a tool for bridging large-scale network analysis and
dynamic quantitative modeling},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1578--1580},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr150},
doi = {10.1093/BIOINFORMATICS/BTR150},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaSW11,
author = {Jianguo Xia and
Igor Sinelnikov and
David S. Wishart},
title = {MetATT: a web-based metabolomics tool for analyzing time-series and
two-factor datasets},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2455--2456},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr392},
doi = {10.1093/BIOINFORMATICS/BTR392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaSW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaZF11,
author = {Fan Xia and
Ji{-}Yuan Zhou and
Wing Kam Fung},
title = {A powerful approach for association analysis incorporating imprinting
effects},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2571--2577},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr443},
doi = {10.1093/BIOINFORMATICS/BTR443},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaZF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaZLLLHZ11,
author = {Deguo Xia and
Haoran Zheng and
Zhiqiang Liu and
Guisheng Li and
Jinlong Li and
Jiong Hong and
Kai Zhao},
title = {{MRSD:} a web server for Metabolic Route Search and Design},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1581--1582},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr160},
doi = {10.1093/BIOINFORMATICS/BTR160},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaZLLLHZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaoLDM11,
author = {Hang Xiao and
Ying Li and
Jiulin Du and
Axel Mosig},
title = {\emph{Ct3d: } tracking microglia motility in 3D using a novel cosegmentation
approach},
journal = {Bioinform.},
volume = {27},
number = {4},
pages = {564--571},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq691},
doi = {10.1093/BIOINFORMATICS/BTQ691},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaoLDM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieKLW11,
author = {Zhipeng Xie and
Chee Keong Kwoh and
Xiaoli Li and
Min Wu},
title = {Construction of co-complex score matrix for protein complex prediction
from {AP-MS} data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {159--166},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr212},
doi = {10.1093/BIOINFORMATICS/BTR212},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieKLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XinGH11,
author = {Yurong Xin and
Yongchao Ge and
Fatemeh G. Haghighi},
title = {Methyl-Analyzer - whole genome {DNA} methylation profiling},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2296--2297},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr356},
doi = {10.1093/BIOINFORMATICS/BTR356},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XinGH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiongBF11,
author = {Hui Yuan Xiong and
Yoseph Barash and
Brendan J. Frey},
title = {Bayesian prediction of tissue-regulated splicing using {RNA} sequence
and cellular context},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2554--2562},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr444},
doi = {10.1093/BIOINFORMATICS/BTR444},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiongBF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiongSOLPP11,
author = {Xuejian Xiong and
Hongyan Song and
Tuan On and
Lucas Lochovsky and
Nicholas J. Provart and
John Parkinson},
title = {PhyloPro: a web-based tool for the generation and visualization of
phylogenetic profiles across Eukarya},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {877--878},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr023},
doi = {10.1093/BIOINFORMATICS/BTR023},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiongSOLPP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuBA11,
author = {Min Xu and
Martin Beck and
Frank Alber},
title = {Template-free detection of macromolecular complexes in cryo electron
tomograms},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {69--76},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr207},
doi = {10.1093/BIOINFORMATICS/BTR207},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuBA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuM11,
author = {Zhenjiang Xu and
David H. Mathews},
title = {Multilign: an algorithm to predict secondary structures conserved
in multiple {RNA} sequences},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {626--632},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq726},
doi = {10.1093/BIOINFORMATICS/BTQ726},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuSFM11,
author = {Wen Xu and
Adam M. Smith and
James R. Faeder and
G. Elisabeta Marai},
title = {RuleBender: a visual interface for rule-based modeling},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1721--1722},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr197},
doi = {10.1093/BIOINFORMATICS/BTR197},
timestamp = {Mon, 17 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuSFM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuWUL11,
author = {Mengyuan Xu and
Clarice R. Weinberg and
David M. Umbach and
Leping Li},
title = {coMOTIF: a mixture framework for identifying transcription factor
and a coregulator motif in ChIP-seq Data},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2625--2632},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr397},
doi = {10.1093/BIOINFORMATICS/BTR397},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuWUL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuanGLHLH11,
author = {Ping Xuan and
Maozu Guo and
Xiaoyan Liu and
Yangchao Huang and
Wenbin Li and
Yufei Huang},
title = {\emph{PlantMiRNAPred}: efficient classification of real and pseudo
plant pre-miRNAs},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1368--1376},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr153},
doi = {10.1093/BIOINFORMATICS/BTR153},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuanGLHLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanBJ11,
author = {Rui Yan and
Paul C. Boutros and
Igor Jurisica},
title = {A tree-based approach for motif discovery and sequence classification},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2054--2061},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr353},
doi = {10.1093/BIOINFORMATICS/BTR353},
timestamp = {Thu, 09 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanBJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangFZZ11,
author = {Yuedong Yang and
Eshel Faraggi and
Huiying Zhao and
Yaoqi Zhou},
title = {Improving protein fold recognition and template-based modeling by
employing probabilistic-based matching between predicted one-dimensional
structural properties of query and corresponding native properties
of templates},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2076--2082},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr350},
doi = {10.1093/BIOINFORMATICS/BTR350},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangFZZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangL11,
author = {Xiaozeng Yang and
Lei Li},
title = {miRDeep-P: a computational tool for analyzing the microRNA transcriptome
in plants},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2614--2615},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr430},
doi = {10.1093/BIOINFORMATICS/BTR430},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLLL11,
author = {Xinan Yang and
Jianrong Li and
Younghee Lee and
Yves A. Lussier},
title = {\emph{GO-Module}: functional synthesis and improved interpretation
of Gene Ontology patterns},
journal = {Bioinform.},
volume = {27},
number = {10},
pages = {1444--1446},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr142},
doi = {10.1093/BIOINFORMATICS/BTR142},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangQYWC11,
author = {Qingqing Yang and
Chengxiang Qiu and
Jie Yang and
Qing Wu and
Qinghua Cui},
title = {miREnvironment Database: providing a bridge for microRNAs, environmental
factors and phenotypes},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3329--3330},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr556},
doi = {10.1093/BIOINFORMATICS/BTR556},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangQYWC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangYLYSZW11,
author = {Shu Yang and
Hari Krishna Yalamanchili and
Xinran Li and
Kwok{-}Ming Yao and
Pak Chung Sham and
Michael Q. Zhang and
Junwen Wang},
title = {Correlated evolution of transcription factors and their binding sites},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {2972--2978},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr503},
doi = {10.1093/BIOINFORMATICS/BTR503},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangYLYSZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangZS11,
author = {Rendong Yang and
Chen Zhang and
Zhen Su},
title = {{LSPR:} an integrated periodicity detection algorithm for unevenly
sampled temporal microarray data},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1023--1025},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr041},
doi = {10.1093/BIOINFORMATICS/BTR041},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangZS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangZWYXY11,
author = {Can Yang and
Xiaowei Zhou and
Xiang Wan and
Qiang Yang and
Hong Xue and
Weichuan Yu},
title = {Identifying disease-associated {SNP} clusters via contiguous outlier
detection},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2578--2585},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr424},
doi = {10.1093/BIOINFORMATICS/BTR424},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangZWYXY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Yasrebi11,
author = {Haleh Yasrebi},
title = {SurvJamda: an {R} package to predict patients' survival and risk assessment
using joint analysis of microarray gene expression data},
journal = {Bioinform.},
volume = {27},
number = {8},
pages = {1168--1169},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr103},
doi = {10.1093/BIOINFORMATICS/BTR103},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Yasrebi11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeWA11,
author = {Xugang Ye and
Guoli Wang and
Stephen F. Altschul},
title = {An assessment of substitution scores for protein profile-profile comparison},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3356--3363},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr565},
doi = {10.1093/BIOINFORMATICS/BTR565},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeWA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YipL11,
author = {Wai{-}Ki Yip and
Christoph Lange},
title = {Quantitative trait prediction based on genetic marker-array data,
a simulation study},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {745--748},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr024},
doi = {10.1093/BIOINFORMATICS/BTR024},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YipL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YoonKHKPKD11,
author = {Sungroh Yoon and
Jinkyu Kim and
Justine Hum and
Hanjoo Kim and
Seunghyun Park and
Wipapat Kladwang and
Rhiju Das},
title = {HiTRACE: high-throughput robust analysis for capillary electrophoresis},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1798--1805},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr277},
doi = {10.1093/BIOINFORMATICS/BTR277},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YoonKHKPKD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YounS11,
author = {Ahrim Youn and
Richard Simon},
title = {Identifying cancer driver genes in tumor genome sequencing studies},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {175--181},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq630},
doi = {10.1093/BIOINFORMATICS/BTQ630},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YounS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YousefiHD11,
author = {Mohammadmahdi R. Yousefi and
Jianping Hua and
Edward R. Dougherty},
title = {Multiple-rule bias in the comparison of classification rules},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1675--1683},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr262},
doi = {10.1093/BIOINFORMATICS/BTR262},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YousefiHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuDBKVSV11,
author = {Danni Yu and
John Danku and
Ivan Baxter and
Sungjin Kim and
Olena K. Vatamaniuk and
David E. Salt and
Olga Vitek},
title = {Noise reduction in genome-wide perturbation screens using linear mixed-effect
models},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2173--2180},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr359},
doi = {10.1093/BIOINFORMATICS/BTR359},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuDBKVSV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuLHSCHMXW11,
author = {Guoqiang Yu and
Huai Li and
Sook S. Ha and
Ie{-}Ming Shih and
Robert Clarke and
Eric P. Hoffman and
Subha Madhavan and
Jianhua Xuan and
Yue Joseph Wang},
title = {{PUGSVM:} a caBIG\({}^{\mbox{TM}}\) analytical tool for multiclass
gene selection and predictive classification},
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volume = {27},
number = {5},
pages = {736--738},
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doi = {10.1093/BIOINFORMATICS/BTQ721},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuLHSCHMXW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuLNCMGTLBHN11,
author = {Tommy Yu and
Catherine M. Lloyd and
David P. Nickerson and
Mike T. Cooling and
Andrew K. Miller and
Alan Garny and
Jonna R. Terkildsen and
James R. Lawson and
Randall Britten and
Peter J. Hunter and
Poul M. F. Nielsen},
title = {The Physiome Model Repository 2},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {743--744},
year = {2011},
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doi = {10.1093/BIOINFORMATICS/BTQ723},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuLNCMGTLBHN11.bib},
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}
@article{DBLP:journals/bioinformatics/YuLTGSMM11,
author = {Shi Yu and
Xinhai Liu and
L{\'{e}}on{-}Charles Tranchevent and
Wolfgang Gl{\"{a}}nzel and
Johan A. K. Suykens and
Bart De Moor and
Yves Moreau},
title = {Optimized data fusion for K-means Laplacian clustering},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {118--126},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq569},
doi = {10.1093/BIOINFORMATICS/BTQ569},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuLTGSMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuRABHL11,
author = {Qing Yu and
Elizabeth M. Ryan and
Todd M. Allen and
Bruce W. Birren and
Matthew R. Henn and
Niall J. Lennon},
title = {PriSM: a primer selection and matching tool for amplification and
sequencing of viral genomes},
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volume = {27},
number = {2},
pages = {266--267},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq624},
doi = {10.1093/BIOINFORMATICS/BTQ624},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuRABHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuZBXSW11,
author = {Guoqiang Yu and
Bai Zhang and
G. Steven Bova and
Jianfeng Xu and
Ie{-}Ming Shih and
Yue Joseph Wang},
title = {{BACOM:} \emph{in silico} detection of genomic deletion types and
correction of normal cell contamination in copy number data},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1473--1480},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr183},
doi = {10.1093/BIOINFORMATICS/BTR183},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuZBXSW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanRCM11,
author = {Yinyin Yuan and
Oscar M. Rueda and
Christina Curtis and
Florian Markowetz},
title = {Penalized regression elucidates aberration hotspots mediating subtype-specific
transcriptional responses in breast cancer},
journal = {Bioinform.},
volume = {27},
number = {19},
pages = {2679--2685},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr450},
doi = {10.1093/BIOINFORMATICS/BTR450},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanRCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YungYWY11,
author = {Ling Sing Yung and
Can Yang and
Xiang Wan and
Weichuan Yu},
title = {{GBOOST:} a GPU-based tool for detecting gene-gene interactions in
genome-wide case control studies},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1309--1310},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr114},
doi = {10.1093/BIOINFORMATICS/BTR114},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZagarMGZBZ11,
author = {Lan Zagar and
Francesca Mulas and
Silvia Garagna and
Maurizio Zuccotti and
Riccardo Bellazzi and
Blaz Zupan},
title = {Stage prediction of embryonic stem cell differentiation from genome-wide
expression data},
journal = {Bioinform.},
volume = {27},
number = {18},
pages = {2546--2553},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr422},
doi = {10.1093/BIOINFORMATICS/BTR422},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZagarMGZBZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZampieriLSA11,
author = {Mattia Zampieri and
Giuseppe Legname and
Daniel Segr{\`{e}} and
Claudio Altafini},
title = {A system-level approach for deciphering the transcriptional response
to prion infection},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3407--3414},
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url = {https://doi.org/10.1093/bioinformatics/btr580},
doi = {10.1093/BIOINFORMATICS/BTR580},
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biburl = {https://dblp.org/rec/journals/bioinformatics/ZampieriLSA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhanCX11,
author = {Haimao Zhan and
Xin Chen and
Shizhong Xu},
title = {A stochastic expectation and maximization algorithm for detecting
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journal = {Bioinform.},
volume = {27},
number = {1},
pages = {63--69},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq558},
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timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhanCX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLLSH11,
author = {Zengming Zhang and
Yu Li and
Biaoyang Lin and
Michael Schroeder and
Bingding Huang},
title = {Identification of cavities on protein surface using multiple computational
approaches for drug binding site prediction},
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volume = {27},
number = {15},
pages = {2083--2088},
year = {2011},
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}
@article{DBLP:journals/bioinformatics/ZhangLLZ11,
author = {Shi{-}Hua Zhang and
Qingjiao Li and
Juan Liu and
Xianghong Jasmine Zhou},
title = {A novel computational framework for simultaneous integration of multiple
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volume = {27},
number = {13},
pages = {401--409},
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biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLLZ11.bib},
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}
@article{DBLP:journals/bioinformatics/ZhangSLMWBYMBTSHSHF11,
author = {Xiaohua Douglas Zhang and
Francesca Santini and
Raul Lacson and
Shane D. Marine and
Qian Wu and
Luca Benetti and
Ruojing Yang and
Alex McCampbell and
Joel P. Berger and
Dawn M. Toolan and
Erica M. Stec and
Daniel J. Holder and
Keith A. Soper and
Joseph F. Heyse and
Marc Ferrer},
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number = {20},
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}
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Ye Tian and
Lu Jin and
Huai Li and
Ie{-}Ming Shih and
Subha Madhavan and
Robert Clarke and
Eric P. Hoffman and
Jianhua Xuan and
Leena Hilakivi{-}Clarke and
Yue Joseph Wang},
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volume = {27},
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number = {13},
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timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
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}
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author = {Jin Zhang and
Yufeng Wu},
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number = {23},
pages = {3228--3234},
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}
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Xianhui Wang and
Le Kang},
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biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWK11.bib},
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}
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Yifan Yang and
Huan Zhang and
Xiaohua Jiang and
Bo Xu and
Yu Xue and
Yunxia Cao and
Qian Zhai and
Yong Zhai and
Mingqing Xu and
Howard J. Cooke and
Qinghua Shi},
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number = {10},
pages = {1436--1437},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangYZJXXCZZXCS11.bib},
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}
@article{DBLP:journals/bioinformatics/ZhaoDLT11,
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W. Dai and
Y. Li and
Lu Tian},
title = {AUC-based biomarker ensemble with an application on gene scores predicting
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volume = {27},
number = {21},
pages = {3050--3055},
year = {2011},
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timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoDLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoLTTWYLLWSH11,
author = {Wenming Zhao and
Wanfei Liu and
Dongmei Tian and
Bixia Tang and
Yanqing Wang and
Caixia Yu and
Rujiao Li and
Yunchao Ling and
Jiayan Wu and
Shuhui Song and
Songnian Hu},
title = {wapRNA: a web-based application for the processing of {RNA} sequences},
journal = {Bioinform.},
volume = {27},
number = {21},
pages = {3076--3077},
year = {2011},
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doi = {10.1093/BIOINFORMATICS/BTR504},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoLTTWYLLWSH11.bib},
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}
@article{DBLP:journals/bioinformatics/ZhaoXLDNLT11,
author = {Wei Zhao and
Meng Xu and
Zhi Liang and
Bo Ding and
Liwen Niu and
Haiyan Liu and
Maikun Teng},
title = {Structure-based \emph{de novo} prediction of zinc-binding sites in
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volume = {27},
number = {9},
pages = {1262--1268},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr133},
doi = {10.1093/BIOINFORMATICS/BTR133},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoXLDNLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengZRRV11,
author = {Cheng Zheng and
Shucha Zhang and
Susanne Ragg and
Daniel Raftery and
Olga Vitek},
title = {Identification and quantification of metabolites in \({}^{\mbox{1}}\)H
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volume = {27},
number = {12},
pages = {1637--1644},
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}
@article{DBLP:journals/bioinformatics/ZhouLSSB11,
author = {Yanxiang Zhou and
Juliane Liepe and
Xia Sheng and
Michael P. H. Stumpf and
Chris P. Barnes},
title = {{GPU} accelerated biochemical network simulation},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {874--876},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr015},
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timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouLSSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouLSXW11,
author = {Jianfu Zhou and
Xiaoguang Liu and
Douglas S. Stones and
Qiang Xie and
Gang Wang},
title = {MrBayes on a Graphics Processing Unit},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1255--1261},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr140},
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timestamp = {Thu, 25 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouLSXW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouN11,
author = {Wanding Zhou and
Luay Nakhleh},
title = {The strength of chemical linkage as a criterion for pruning metabolic
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volume = {27},
number = {14},
pages = {1957--1963},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr271},
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timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouN11.bib},
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}
@article{DBLP:journals/bioinformatics/ZhouQLZWZYZ11,
author = {Yang Zhou and
Wubin Qu and
Yiming Lu and
Yanchun Zhang and
Xiaolei Wang and
Dongsheng Zhao and
Yi Yang and
Chenggang Zhang},
title = {VizPrimer: a web server for visualized {PCR} primer design based on
known gene structure},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3432--3434},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr582},
doi = {10.1093/BIOINFORMATICS/BTR582},
timestamp = {Tue, 13 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouQLZWZYZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouXW11,
author = {Yi{-}Hui Zhou and
Kai Xia and
Fred A. Wright},
title = {A powerful and flexible approach to the analysis of {RNA} sequence
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volume = {27},
number = {19},
pages = {2672--2678},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr449},
doi = {10.1093/BIOINFORMATICS/BTR449},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouXW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouZWD11,
author = {Ming Zhou and
Xiliang Zheng and
Jin Wang and
Shaojun Dong},
title = {'Non-destructive' biocomputing security system based on gas-controlled
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journal = {Bioinform.},
volume = {27},
number = {3},
pages = {399--404},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq678},
doi = {10.1093/BIOINFORMATICS/BTQ678},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouZWD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuHMZLY11,
author = {Tianqi Zhu and
Yucheng Hu and
Zhiming Ma and
De{-}Xing Zhang and
Tiejun Li and
Ziheng Yang},
title = {Efficient simulation under a population genetics model of carcinogenesis},
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volume = {27},
number = {6},
pages = {837--843},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr025},
doi = {10.1093/BIOINFORMATICS/BTR025},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuHMZLY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuMH11,
author = {Qianqian Zhu and
Jeffrey C. Miecznikowski and
Marc S. Halfon},
title = {A wholly defined Agilent microarray spike-in dataset},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1284--1289},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr135},
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timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuMH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuP11,
author = {Hongbo Zhu and
M. Teresa Pisabarro},
title = {MSPocket: an orientation-independent algorithm for the detection of
ligand binding pockets},
journal = {Bioinform.},
volume = {27},
number = {3},
pages = {351--358},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq672},
doi = {10.1093/BIOINFORMATICS/BTQ672},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Zi11,
author = {Zhike Zi},
title = {{SBML-PET-MPI:} a parallel parameter estimation tool for Systems Biology
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journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1028--1029},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr038},
doi = {10.1093/BIOINFORMATICS/BTR038},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Zi11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZielezinskiK11,
author = {Andrzej Zielezinski and
Wojciech M. Karlowski},
title = {Agos - a universal web tool for {GW} Argonaute-binding domain prediction},
journal = {Bioinform.},
volume = {27},
number = {9},
pages = {1318--1319},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr128},
doi = {10.1093/BIOINFORMATICS/BTR128},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZielezinskiK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZsilaBMHPBH11,
author = {Ferenc Zsila and
Zsolt Bik{\'{a}}di and
David Malik and
P{\'{e}}ter H{\'{a}}ri and
Imre Pechan and
Attila B{\'{e}}rces and
Eszter Hazai},
title = {Evaluation of drug-human serum albumin binding interactions with support
vector machine aided online automated docking},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1806--1813},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr284},
doi = {10.1093/BIOINFORMATICS/BTR284},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZsilaBMHPBH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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