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@article{DBLP:journals/bioinformatics/0014FLLC16,
author = {Bin Liu and
Longyun Fang and
Ren Long and
Xun Lan and
Kuo{-}Chen Chou},
title = {iEnhancer-2L: a two-layer predictor for identifying enhancers and
their strength by pseudo \emph{k}-tuple nucleotide composition},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {362--369},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv604},
doi = {10.1093/BIOINFORMATICS/BTV604},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/0014FLLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbenVMW16,
author = {Nanne Aben and
Daniel J. Vis and
Magali Michaut and
Lodewyk F. A. Wessels},
title = {{TANDEM:} a two-stage approach to maximize interpretability of drug
response models based on multiple molecular data types},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {413--420},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw449},
doi = {10.1093/BIOINFORMATICS/BTW449},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbenVMW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgostinelliCSSB16,
author = {Forest Agostinelli and
Nicholas Ceglia and
Babak Shahbaba and
Paolo Sassone{-}Corsi and
Pierre Baldi},
title = {What time is it? Deep learning approaches for circadian rhythms},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {8--17},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw243},
doi = {10.1093/BIOINFORMATICS/BTW243},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgostinelliCSSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgostinelliCSSB16a,
author = {Forest Agostinelli and
Nicholas Ceglia and
Babak Shahbaba and
Paolo Sassone{-}Corsi and
Pierre Baldi},
title = {What time is it? Deep learning approaches for circadian rhythms},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3051},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw504},
doi = {10.1093/BIOINFORMATICS/BTW504},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgostinelliCSSB16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgravatSRCS16,
author = {Sanjay Agravat and
Xuezheng Song and
Teerapat Rojsajjakul and
Richard D. Cummings and
David F. Smith},
title = {Computational approaches to define a human milk metaglycome},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1471--1478},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw048},
doi = {10.1093/BIOINFORMATICS/BTW048},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgravatSRCS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AijoYRL16,
author = {Tarmo {\"{A}}ij{\"{o}} and
Xiaojing Yue and
Anjana Rao and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {LuxGLM: a probabilistic covariate model for quantification of {DNA}
methylation modifications with complex experimental designs},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {511--519},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw468},
doi = {10.1093/BIOINFORMATICS/BTW468},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AijoYRL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Al-NumairLSMEM16,
author = {Nouf S. Al{-}Numair and
Luis Lopes and
Petros Syrris and
Lorenzo Monserrat and
Perry Elliott and
Andrew C. R. Martin},
title = {The structural effects of mutations can aid in differential phenotype
prediction of beta-myosin heavy chain (Myosin-7) missense variants},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2947--2955},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw362},
doi = {10.1093/BIOINFORMATICS/BTW362},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Al-NumairLSMEM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Alekseyenko16,
author = {Alexander V. Alekseyenko},
title = {Multivariate Welch \emph{t}-test on distances},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3552--3558},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw524},
doi = {10.1093/BIOINFORMATICS/BTW524},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Alekseyenko16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlkhnbashiSGSCB16,
author = {Omer S. Alkhnbashi and
Shiraz A. Shah and
Roger A. Garrett and
Sita J. Saunders and
Fabrizio Costa and
Rolf Backofen},
title = {Characterizing leader sequences of {CRISPR} loci},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {576--585},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw454},
doi = {10.1093/BIOINFORMATICS/BTW454},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlkhnbashiSGSCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlvesY16,
author = {Gelio Alves and
Yi{-}Kuo Yu},
title = {Confidence assignment for mass spectrometry based peptide identifications
via the extreme value distribution},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2642--2649},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw225},
doi = {10.1093/BIOINFORMATICS/BTW225},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlvesY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ammad-ud-dinKMM16,
author = {Muhammad Ammad{-}ud{-}din and
Suleiman A. Khan and
Disha Malani and
Astrid Murum{\"{a}}gi and
Olli{-}P. Kallioniemi and
Tero Aittokallio and
Samuel Kaski},
title = {Drug response prediction by inferring pathway-response associations
with kernelized Bayesian matrix factorization},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {455--463},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw433},
doi = {10.1093/BIOINFORMATICS/BTW433},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ammad-ud-dinKMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnHD16,
author = {Xuebei An and
Jianhua Hu and
Kim{-}Anh Do},
title = {{SIFORM:} shared informative factor models for integration of multi-platform
bioinformatic data},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3279--3290},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw295},
doi = {10.1093/BIOINFORMATICS/BTW295},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnHD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreattaN16,
author = {Massimo Andreatta and
Morten Nielsen},
title = {Gapped sequence alignment using artificial neural networks: application
to the {MHC} class {I} system},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {511--517},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv639},
doi = {10.1093/BIOINFORMATICS/BTV639},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndreattaN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndronovLVK16,
author = {Leonid Andronov and
Yves Lutz and
Jean{-}Luc Vonesch and
Bruno P. Klaholz},
title = {SharpViSu: integrated analysis and segmentation of super-resolution
microscopy data},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2239--2241},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw123},
doi = {10.1093/BIOINFORMATICS/BTW123},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndronovLVK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AngererHBTMB16,
author = {Philipp Angerer and
Laleh Haghverdi and
Maren B{\"{u}}ttner and
Fabian J. Theis and
Carsten Marr and
Florian A. B{\"{u}}ttner},
title = {\emph{destiny}: diffusion maps for large-scale single-cell data in
{R}},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1241--1243},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv715},
doi = {10.1093/BIOINFORMATICS/BTV715},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AngererHBTMB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntipovHSRLP16,
author = {Dmitry Antipov and
Nolan Hartwick and
Max W. Shen and
Mikhail Raiko and
Alla L. Lapidus and
Pavel A. Pevzner},
title = {plasmidSPAdes: assembling plasmids from whole genome sequencing data},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3380--3387},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw493},
doi = {10.1093/BIOINFORMATICS/BTW493},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntipovHSRLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntipovKMP16,
author = {Dmitry Antipov and
Anton I. Korobeynikov and
Jeffrey S. McLean and
Pavel A. Pevzner},
title = {hybridSPAdes: an algorithm for hybrid assembly of short and long reads},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1009--1015},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv688},
doi = {10.1093/BIOINFORMATICS/BTV688},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntipovKMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AportelaLC16,
author = {Erney Ram{\'{\i}}rez{-}Aportela and
Jos{\'{e}} Ram{\'{o}}n L{\'{o}}pez{-}Blanco and
Pablo Chac{\'{o}}n},
title = {{FRODOCK} 2.0: fast protein-protein docking server},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2386--2388},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw141},
doi = {10.1093/BIOINFORMATICS/BTW141},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AportelaLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Arandjelovic16,
author = {Ognjen Arandjelovic},
title = {On the discovery of hospital admission patterns - a clarification},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2078},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw049},
doi = {10.1093/BIOINFORMATICS/BTW049},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Arandjelovic16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AraujoLSLSMTSR16,
author = {Gilderlanio S. Ara{\'{u}}jo and
Lucas Henrique C. Lima and
Silvana Schneider and
Thiago P. Leal and
Ana Paula Couto da Silva and
Pedro O. S. Vaz de Melo and
Eduardo Tarazona{-}Santos and
Mar{\'{\i}}lia O. Scliar and
Ma{\'{\i}}ra R. Rodrigues},
title = {Integrating, summarizing and visualizing GWAS-hits and human diversity
with {DANCE} (Disease-ANCEstry networks)},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1247--1249},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv708},
doi = {10.1093/BIOINFORMATICS/BTV708},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AraujoLSLSMTSR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArbabiRB16,
author = {Aryan Arbabi and
Ladislav Ramp{\'{a}}sek and
Michael Brudno},
title = {Cell-free {DNA} fragment-size distribution analysis for non-invasive
prenatal {CNV} prediction},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1662--1669},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw178},
doi = {10.1093/BIOINFORMATICS/BTW178},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArbabiRB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArenillasFKLcWM16,
author = {David J. Arenillas and
Alistair R. R. Forrest and
Hideya Kawaji and
Timo Lassmann and
Wyeth W. Wasserman and
Anthony Mathelier},
title = {CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2858--2860},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw337},
doi = {10.1093/BIOINFORMATICS/BTW337},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArenillasFKLcWM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArmondVMB16,
author = {Jonathan W. Armond and
Elina Vladimirou and
Andrew D. McAinsh and
Nigel J. Burroughs},
title = {KiT: a {MATLAB} package for kinetochore tracking},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1917--1919},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw087},
doi = {10.1093/BIOINFORMATICS/BTW087},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArmondVMB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArnoldBZ16,
author = {Christian Arnold and
Pooja Bhat and
Judith B. Zaugg},
title = {\emph{SNPhood}: investigate, quantify and visualise the epigenomic
neighbourhood of SNPs using {NGS} data},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2359--2360},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw127},
doi = {10.1093/BIOINFORMATICS/BTW127},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArnoldBZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArthurOSC16,
author = {Rudy Arthur and
Jared O'Connell and
Ole Schulz{-}Trieglaff and
Anthony J. Cox},
title = {Rapid genotype refinement for whole-genome sequencing data using multi-variate
normal distributions},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2306--2312},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw097},
doi = {10.1093/BIOINFORMATICS/BTW097},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArthurOSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AudainRHFP16,
author = {Enrique Audain and
Yassel Ramos and
Henning Hermjakob and
Darren R. Flower and
Yasset P{\'{e}}rez{-}Riverol},
title = {Accurate estimation of isoelectric point of protein and peptide based
on amino acid sequences},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {821--827},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv674},
doi = {10.1093/BIOINFORMATICS/BTV674},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AudainRHFP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AwanS16,
author = {Muaaz Gul Awan and
Fahad Saeed},
title = {{MS-REDUCE:} an ultrafast technique for reduction of big mass spectrometry
data for high-throughput processing},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1518--1526},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw023},
doi = {10.1093/BIOINFORMATICS/BTW023},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AwanS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaierBO16,
author = {Uwe Baier and
Timo Beller and
Enno Ohlebusch},
title = {Graphical pan-genome analysis with compressed suffix trees and the
Burrows-Wheeler transform},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {497--504},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv603},
doi = {10.1093/BIOINFORMATICS/BTV603},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaierBO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakerSGAHSK16,
author = {Simon Baker and
Ilona Silins and
Yufan Guo and
Imran Ali and
Johan H{\"{o}}gberg and
Ulla Stenius and
Anna Korhonen},
title = {Automatic semantic classification of scientific literature according
to the hallmarks of cancer},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {432--440},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv585},
doi = {10.1093/BIOINFORMATICS/BTV585},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakerSGAHSK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakirovJZ16,
author = {Daniyar Bakirov and
Alex Pappachen James and
Amin Zollanvari},
title = {An efficient method to estimate the optimum regularization parameter
in {RLDA}},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3461--3468},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw506},
doi = {10.1093/BIOINFORMATICS/BTW506},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakirovJZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiP16,
author = {Pierre Baldi and
Teresa M. Przytycka},
title = {{ISMB} 2016 Proceedings},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1--2},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw326},
doi = {10.1093/BIOINFORMATICS/BTW326},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Balsa-CantoHGB16,
author = {Eva Balsa{-}Canto and
David Henriques and
Attila G{\'{a}}bor and
Julio R. Banga},
title = {AMIGO2, a toolbox for dynamic modeling, optimization and control in
systems biology},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3357--3359},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw411},
doi = {10.1093/BIOINFORMATICS/BTW411},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Balsa-CantoHGB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BangKS16,
author = {Sunjoo Bang and
Jae{-}Hoon Kim and
Hyunjung Shin},
title = {Causality modeling for directed disease network},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {437--444},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw439},
doi = {10.1093/BIOINFORMATICS/BTW439},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BangKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BansalBL16,
author = {Vikas Bansal and
Ondrej Libiger},
title = {A statistical method for the detection of variants from next-generation
resequencing of {DNA} poolsA probabilistic method for the detection
and genotyping of small indels from population-scale sequence data},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3213},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw520},
doi = {10.1093/BIOINFORMATICS/BTW520},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BansalBL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarillariOFRRR16,
author = {Caterina Barillari and
Diana S. M. Ottoz and
Juan Mariano Fuentes{-}Serna and
Chandrasekhar Ramakrishnan and
Bernd Rinn and
Fabian Rudolf},
title = {openBIS {ELN-LIMS:} an open-source database for academic laboratories},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {638--640},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv606},
doi = {10.1093/BIOINFORMATICS/BTV606},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarillariOFRRR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarnettAN16,
author = {Christopher B. Barnett and
Kiyoko F. Aoki{-}Kinoshita and
Kevin J. Naidoo},
title = {The Glycome Analytics Platform: an integrative framework for glycobioinformatics},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3005--3011},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw341},
doi = {10.1093/BIOINFORMATICS/BTW341},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarnettAN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarquistMCCBPLQ16,
author = {Lars Barquist and
Matthew Mayho and
Carla A. Cummins and
Amy K. Cain and
Christine J. Boinett and
Andrew J. Page and
Gemma C. Langridge and
Michael A. Quail and
Jacqueline A. Keane and
Julian Parkhill},
title = {The TraDIS toolkit: sequencing and analysis for dense transposon mutant
libraries},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1109--1111},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw022},
doi = {10.1093/BIOINFORMATICS/BTW022},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarquistMCCBPLQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarsacchiNKB16,
author = {Marco Barsacchi and
Eva Maria Novoa and
Manolis Kellis and
Alessio Bechini},
title = {SwiSpot: modeling riboswitches by spotting out switching sequences},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3252--3259},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw401},
doi = {10.1093/BIOINFORMATICS/BTW401},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarsacchiNKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BartonLCC16,
author = {John P. Barton and
Eleonora De Leonardis and
Alice Coucke and
Simona Cocco},
title = {{ACE:} adaptive cluster expansion for maximum entropy graphical model
inference},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3089--3097},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw328},
doi = {10.1093/BIOINFORMATICS/BTW328},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BartonLCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BartschatHRMS16,
author = {Andreas Bartschat and
Eduard H{\"{u}}bner and
Markus Reischl and
Ralf Mikut and
Johannes Stegmaier},
title = {{XPIWIT} - an {XML} pipeline wrapper for the Insight Toolkit},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {315--317},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv559},
doi = {10.1093/BIOINFORMATICS/BTV559},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BartschatHRMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarveO16,
author = {Vijay Barve and
Javier Otegui},
title = {bdvis: visualizing biodiversity data in {R}},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3049--3050},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw333},
doi = {10.1093/BIOINFORMATICS/BTW333},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarveO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BastkowskiM0W16,
author = {Sarah Bastkowski and
Vincent Moulton and
Andreas Spillner and
Taoyang Wu},
title = {The minimum evolution problem is hard: a link between tree inference
and graph clustering problems},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {518--522},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv623},
doi = {10.1093/BIOINFORMATICS/BTV623},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BastkowskiM0W16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BasuPSRMBW16,
author = {Subhadip Basu and
Dariusz Plewczynski and
Satadal Saha and
Matylda Roszkowska and
Marta Magnowska and
Ewa Baczynska and
Jakub Wlodarczyk},
title = {2dSpAn: semiautomated 2-d segmentation, classification and analysis
of hippocampal dendritic spine plasticity},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2490--2498},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw172},
doi = {10.1093/BIOINFORMATICS/BTW172},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BasuPSRMBW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BasuW16,
author = {Sankar Basu and
Bj{\"{o}}rn Wallner},
title = {Finding correct protein-protein docking models using ProQDock},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {262--270},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw257},
doi = {10.1093/BIOINFORMATICS/BTW257},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BasuW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BehrLLNR16,
author = {Aaron A. Behr and
Katherine Z. Liu and
Gracie Liu{-}Fang and
Priyanka Nakka and
Sohini Ramachandran},
title = {pong: fast analysis and visualization of latent clusters in population
genetic data},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2817--2823},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw327},
doi = {10.1093/BIOINFORMATICS/BTW327},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BehrLLNR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BelonogovaSA16,
author = {Nadezhda M. Belonogova and
Gulnara R. Svishcheva and
Tatiana I. Axenovich},
title = {{FREGAT:} an {R} package for region-based association analysis},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2392--2393},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw160},
doi = {10.1093/BIOINFORMATICS/BTW160},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BelonogovaSA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ben-ElazarCY16,
author = {Shay Ben{-}Elazar and
Benny Chor and
Zohar Yakhini},
title = {Extending partial haplotypes to full genome haplotypes using chromosome
conformation capture data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {559--566},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw453},
doi = {10.1093/BIOINFORMATICS/BTW453},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ben-ElazarCY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BennerSHSRP16,
author = {Christian Benner and
Chris C. A. Spencer and
Aki S. Havulinna and
Veikko Salomaa and
Samuli Ripatti and
Matti Pirinen},
title = {{FINEMAP:} efficient variable selection using summary data from genome-wide
association studies},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1493--1501},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw018},
doi = {10.1093/BIOINFORMATICS/BTW018},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BennerSHSRP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BergmannCAVZ16,
author = {Ewa A. Bergmann and
Bo{-}Juen Chen and
Kanika Arora and
Vladimir Vacic and
Michael C. Zody},
title = {Conpair: concordance and contamination estimator for matched tumor-normal
pairs},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3196--3198},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw389},
doi = {10.1093/BIOINFORMATICS/BTW389},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BergmannCAVZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BergmannSZ16,
author = {Frank T. Bergmann and
Sven Sahle and
Christoph Zimmer},
title = {Piecewise parameter estimation for stochastic models in {COPASI}},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1586--1588},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv759},
doi = {10.1093/BIOINFORMATICS/BTV759},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BergmannSZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerisaP16,
author = {Tomaz Berisa and
Joseph K. Pickrell},
title = {Approximately independent linkage disequilibrium blocks in human populations},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {283--285},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv546},
doi = {10.1093/BIOINFORMATICS/BTV546},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerisaP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BernardesVZC16,
author = {Juliana S. Bernardes and
Fabio R. J. Vieira and
Gerson Zaverucha and
Alessandra Carbone},
title = {A multi-objective optimization approach accurately resolves protein
domain architectures},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {345--353},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv582},
doi = {10.1093/BIOINFORMATICS/BTV582},
timestamp = {Wed, 15 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BernardesVZC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhattacharyaALC16,
author = {Debswapna Bhattacharya and
Badri Adhikari and
Jilong Li and
Jianlin Cheng},
title = {{FRAGSION:} ultra-fast protein fragment library generation by {IOHMM}
sampling},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2059--2061},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw067},
doi = {10.1093/BIOINFORMATICS/BTW067},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhattacharyaALC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhattacharyaCC16,
author = {Debswapna Bhattacharya and
Renzhi Cao and
Jianlin Cheng},
title = {UniCon3D: \emph{de novo} protein structure prediction using united-residue
conformational search via stepwise, probabilistic sampling},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2791--2799},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw316},
doi = {10.1093/BIOINFORMATICS/BTW316},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhattacharyaCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BigdeliLWRVFKB16,
author = {T. Bernard Bigdeli and
Donghyung Lee and
Bradley Todd Webb and
Brien P. Riley and
Vladimir I. Vladimirov and
Ayman H. Fanous and
Kenneth S. Kendler and
Silviu{-}Alin Bacanu},
title = {A simple yet accurate correction for winner's curse can predict signals
discovered in much larger genome scans},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2598--2603},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw303},
doi = {10.1093/BIOINFORMATICS/BTW303},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BigdeliLWRVFKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiggsP16,
author = {Matthew B. Biggs and
Jason A. Papin},
title = {Metabolic network-guided binning of metagenomic sequence fragments},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {867--874},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv671},
doi = {10.1093/BIOINFORMATICS/BTV671},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BiggsP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlattiS16,
author = {Charles Blatti and
Saurabh Sinha},
title = {Characterizing gene sets using discriminative random walks with restart
on heterogeneous biological networks},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2167--2175},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw151},
doi = {10.1093/BIOINFORMATICS/BTW151},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlattiS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlomstedtDSBK16,
author = {Paul Blomstedt and
Ritabrata Dutta and
Sohan Seth and
Alvis Brazma and
Samuel Kaski},
title = {Modelling-based experiment retrieval: a case study with gene expression
clustering},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1388--1394},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv762},
doi = {10.1093/BIOINFORMATICS/BTV762},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlomstedtDSBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BodilyFSVC16,
author = {Paul M. Bodily and
M. Stanley Fujimoto and
Quinn Snell and
Dan Ventura and
Mark J. Clement},
title = {ScaffoldScaffolder: solving contig orientation via bidirected to directed
graph reduction},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {17--24},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv548},
doi = {10.1093/BIOINFORMATICS/BTV548},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BodilyFSVC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonniciBMBPG16,
author = {Vincenzo Bonnici and
Federico Busato and
Giovanni Micale and
Nicola Bombieri and
Alfredo Pulvirenti and
Rosalba Giugno},
title = {{APPAGATO:} an APproximate PArallel and stochastic GrAph querying
TOol for biological networks},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2159--2166},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw223},
doi = {10.1093/BIOINFORMATICS/BTW223},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonniciBMBPG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BornichGHPCS16,
author = {Claus B{\o}rnich and
Ivar Grytten and
Eivind Hovig and
Jonas Paulsen and
Martin Cech and
Geir Kjetil Sandve},
title = {Galaxy Portal: interacting with the galaxy platform through mobile
devices},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1743--1745},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw042},
doi = {10.1093/BIOINFORMATICS/BTW042},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BornichGHPCS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorozanF16,
author = {Ivan Borozan and
Vincent Ferretti},
title = {{CSSSCL:} a python package that uses combined sequence similarity
scores for accurate taxonomic classification of long and short sequence
reads},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {453--455},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv587},
doi = {10.1093/BIOINFORMATICS/BTV587},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorozanF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BottomlyMW16,
author = {Daniel Bottomly and
Shannon K. McWeeney and
Beth Wilmot},
title = {HitWalker2: visual analytics for precision medicine and beyond},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1253--1255},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv739},
doi = {10.1093/BIOINFORMATICS/BTV739},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BottomlyMW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BovoLMFC16,
author = {Samuele Bovo and
Pietro Di Lena and
Pier Luigi Martelli and
Piero Fariselli and
Rita Casadio},
title = {{NET-GE:} a web-server for NETwork-based human gene enrichment},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3489--3491},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw508},
doi = {10.1093/BIOINFORMATICS/BTW508},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BovoLMFC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BremgesSWS16,
author = {Andreas Bremges and
Esther Singer and
Tanja Woyke and
Alexander Sczyrba},
title = {MeCorS: Metagenome-enabled error correction of single cell sequencing
reads},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2199--2201},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw144},
doi = {10.1093/BIOINFORMATICS/BTW144},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BremgesSWS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrindaBK16,
author = {Karel Brinda and
Valentina Boeva and
Gregory Kucherov},
title = {{RNF:} a general framework to evaluate {NGS} read mappers},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {136--139},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv524},
doi = {10.1093/BIOINFORMATICS/BTV524},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrindaBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrouardSDdBR16,
author = {C{\'{e}}line Brouard and
Huibin Shen and
Kai D{\"{u}}hrkop and
Florence d'Alch{\'{e}}{-}Buc and
Sebastian B{\"{o}}cker and
Juho Rousu},
title = {Fast metabolite identification with Input Output Kernel Regression},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {28--36},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw246},
doi = {10.1093/BIOINFORMATICS/BTW246},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrouardSDdBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownPYZ16,
author = {Peter Brown and
Wayne Pullan and
Yuedong Yang and
Yaoqi Zhou},
title = {Fast and accurate non-sequential protein structure alignment using
a new asymmetric linear sum assignment heuristic},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {370--377},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv580},
doi = {10.1093/BIOINFORMATICS/BTV580},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownPYZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuiLHL16,
author = {Van{-}Minh Bui and
Cheng{-}Tsung Lu and
Thi{-}Trang Ho and
Tzong{-}Yi Lee},
title = {{MDD-SOH:} exploiting maximal dependence decomposition to identify
\emph{S}-sulfenylation sites with substrate motifs},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {165--172},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv558},
doi = {10.1093/BIOINFORMATICS/BTV558},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuiLHL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BunteLSK16,
author = {Kerstin Bunte and
Eemeli Lepp{\"{a}}aho and
Inka Saarinen and
Samuel Kaski},
title = {Sparse group factor analysis for biclustering of multiple data sources},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2457--2463},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw207},
doi = {10.1093/BIOINFORMATICS/BTW207},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BunteLSK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurkettMG16,
author = {Kelly M. Burkett and
Brad McNeney and
Jinko Graham},
title = {Sampletrees and Rsampletrees: sampling gene genealogies conditional
on {SNP} genotype data},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1580--1582},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv763},
doi = {10.1093/BIOINFORMATICS/BTV763},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BurkettMG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BushmanovaALSP16,
author = {Elena Bushmanova and
Dmitry Antipov and
Alla L. Lapidus and
Vladimir Suvorov and
Andrey D. Prjibelski},
title = {rnaQUAST: a quality assessment tool for \emph{de novo} transcriptome
assemblies},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2210--2212},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw218},
doi = {10.1093/BIOINFORMATICS/BTW218},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BushmanovaALSP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BustamanteSSMEB16,
author = {Juan P. Bustamante and
Mar{\'{\i}}a E. Szretter and
Mariela Sued and
Marcelo A. Marti and
Dario A. Estrin and
Leonardo Boechi},
title = {A quantitative model for oxygen uptake and release in a family of
hemeproteins},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1805--1813},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw083},
doi = {10.1093/BIOINFORMATICS/BTW083},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BustamanteSSMEB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ButkiewiczBFDYR16,
author = {Mariusz Butkiewicz and
Jessica Cooke Bailey and
Alex T. Frase and
Scott M. Dudek and
Brian L. Yaspan and
Marylyn D. Ritchie and
Sarah A. Pendergrass and
Jonathan L. Haines},
title = {Pathway analysis by randomization incorporating structure - {PARIS:}
an update},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2361--2363},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw130},
doi = {10.1093/BIOINFORMATICS/BTW130},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ButkiewiczBFDYR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuzduganKNSFB16,
author = {Laura Buzdugan and
Markus Kalisch and
Arcadi Navarro and
Daniel Schunk and
Ernst Fehr and
Peter B{\"{u}}hlmann},
title = {Assessing statistical significance in multivariable genome wide association
analysis},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1990--2000},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw128},
doi = {10.1093/BIOINFORMATICS/BTW128},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuzduganKNSFB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaiGLW16,
author = {Mingyang Cai and
Fan Gao and
Wange Lu and
Kai Wang},
title = {w4CSeq: software and web application to analyze 4C-seq data},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3333--3335},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw408},
doi = {10.1093/BIOINFORMATICS/BTW408},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaiGLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CanovasMT16,
author = {Rodrigo C{\'{a}}novas and
Alistair Moffat and
Andrew Turpin},
title = {{CSAM:} Compressed {SAM} format},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3709--3716},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw543},
doi = {10.1093/BIOINFORMATICS/BTW543},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CanovasMT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoGCC16,
author = {Minh Duc Cao and
Devika Ganesamoorthy and
Matthew A. Cooper and
Lachlan J. M. Coin},
title = {Realtime analysis and visualization of MinION sequencing data with
npReader},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {764--766},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv658},
doi = {10.1093/BIOINFORMATICS/BTV658},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoGCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoQGDW16,
author = {Shaolong Cao and
Huaizhen Qin and
Alexej Gossmann and
Hong{-}Wen Deng and
Yu{-}Ping Wang},
title = {Unified tests for fine-scale mapping and identifying sparse high-dimensional
sequence associations},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {330--337},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv586},
doi = {10.1093/BIOINFORMATICS/BTV586},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoQGDW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CapitaniDBBS16,
author = {Guido Capitani and
Jose M. Duarte and
Kumaran Baskaran and
Spencer Bliven and
Joseph C. Somody},
title = {Understanding the fabric of protein crystals: computational classification
of biological interfaces and crystal contacts},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {481--489},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv622},
doi = {10.1093/BIOINFORMATICS/BTV622},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CapitaniDBBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaroliTFSB16,
author = {Jimmy Caroli and
Cristian Taccioli and
A. De La Fuente and
P. Serafini and
Silvio Bicciato},
title = {{APTANI:} a computational tool to select aptamers through sequence-structure
motif analysis of {HT-SELEX} data},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {161--164},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv545},
doi = {10.1093/BIOINFORMATICS/BTV545},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaroliTFSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarrieriUP16,
author = {Anna Paola Carrieri and
Filippo Utro and
Laxmi Parida},
title = {Sampling {ARG} of multiple populations under complex configurations
of subdivision and admixture},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1048--1056},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv716},
doi = {10.1093/BIOINFORMATICS/BTV716},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarrieriUP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CavalcantePWBKS16,
author = {Raymond G. Cavalcante and
Snehal Patil and
Terry E. Weymouth and
Kestutis G. Bendinskas and
Alla Karnovsky and
Maureen A. Sartor},
title = {ConceptMetab: exploring relationships among metabolite sets to identify
links among biomedical concepts},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1536--1543},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw016},
doi = {10.1093/BIOINFORMATICS/BTW016},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CavalcantePWBKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CestarelliFFBW16,
author = {Valerio Cestarelli and
Giulia Fiscon and
Giovanni Felici and
Paola Bertolazzi and
Emanuel Weitschek},
title = {{CAMUR:} Knowledge extraction from RNA-seq cancer data through equivalent
classification rules},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {697--704},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv635},
doi = {10.1093/BIOINFORMATICS/BTV635},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CestarelliFFBW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChagoyenP16,
author = {Monica Chagoyen and
Florencio Pazos},
title = {Characterization of clinical signs in the human interactome},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1761--1765},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw054},
doi = {10.1093/BIOINFORMATICS/BTW054},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChagoyenP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChanIRL16,
author = {Yat Hin Chan and
Jukka Intosalmi and
Sini Rautio and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {A subpopulation model to analyze heterogeneous cell differentiation
dynamics},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3306--3313},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw395},
doi = {10.1093/BIOINFORMATICS/BTW395},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChanIRL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangCWHLYH16,
author = {Chia{-}Hua Chang and
Min{-}Te Chou and
Yi{-}Chung Wu and
Ting{-}Wei Hong and
Yun{-}Lung Li and
Chia{-}Hsiang Yang and
Jui{-}Hung Hung},
title = {sBWT: memory efficient implementation of the hardware-acceleration-friendly
Schindler transform for the fast biological sequence mapping},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3498--3500},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw419},
doi = {10.1093/BIOINFORMATICS/BTW419},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangCWHLYH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangT16,
author = {Billy Heung Wing Chang and
Weidong Tian},
title = {GSA-Lightning: ultra-fast permutation-based gene set analysis},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3029--3031},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw349},
doi = {10.1093/BIOINFORMATICS/BTW349},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChartierAN16,
author = {Matthieu Chartier and
Etienne Adriansen and
Rafael Najmanovich},
title = {IsoMIF Finder: online detection of binding site molecular interaction
field similarities},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {621--623},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv616},
doi = {10.1093/BIOINFORMATICS/BTV616},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChartierAN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenHMNMZPWWC16,
author = {Chuming Chen and
Hongzhan Huang and
Raja Mazumder and
Darren A. Natale and
Peter B. McGarvey and
Jian Zhang and
Shawn W. Polson and
Yuqi Wang and
Cathy H. Wu},
title = {Computational clustering for viral reference proteomes},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2041--2043},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw110},
doi = {10.1093/BIOINFORMATICS/BTW110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenHMNMZPWWC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenHR16,
author = {Jie Chen and
Alfred O. Hero III and
Indika Rajapakse},
title = {Spectral identification of topological domains},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2151--2158},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw221},
doi = {10.1093/BIOINFORMATICS/BTW221},
timestamp = {Wed, 16 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenHR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenJSHJSKBL16,
author = {Jun Chen and
Allan C. Just and
Joel Schwartz and
Lifang Hou and
Nadereh Jafari and
Zhifu Sun and
Jean{-}Pierre A. Kocher and
Andrea A. Baccarelli and
Xihong Lin},
title = {CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide
association studies},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {469--471},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv577},
doi = {10.1093/BIOINFORMATICS/BTV577},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenJSHJSKBL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenL16,
author = {Eric Z. Chen and
Hongzhe Li},
title = {A two-part mixed-effects model for analyzing longitudinal microbiome
compositional data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2611--2617},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw308},
doi = {10.1093/BIOINFORMATICS/BTW308},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLLC16,
author = {Pei Chen and
Rui Liu and
Yongjun Li and
Luonan Chen},
title = {Detecting critical state before phase transition of complex biological
systems by hidden Markov model},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2143--2150},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw154},
doi = {10.1093/BIOINFORMATICS/BTW154},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLNSX16,
author = {Yifei Chen and
Yi Li and
Rajiv Narayan and
Aravind Subramanian and
Xiaohui Xie},
title = {Gene expression inference with deep learning},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1832--1839},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw074},
doi = {10.1093/BIOINFORMATICS/BTW074},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLNSX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLZY16,
author = {Ruoyan Chen and
Yu{-}Lung Lau and
Yan Zhang and
Wanling Yang},
title = {SRinversion: a tool for detecting short inversions by splitting and
re-aligning poorly mapped and unmapped sequencing reads},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3559--3565},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw516},
doi = {10.1093/BIOINFORMATICS/BTW516},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLZY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenQ16,
author = {Li Chen and
Zhaohui S. Qin},
title = {traseR: an {R} package for performing trait-associated {SNP} enrichment
analysis in genomic intervals},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1214--1216},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv741},
doi = {10.1093/BIOINFORMATICS/BTV741},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSC16,
author = {Haifeng Chen and
Andrew D. Smith and
Ting Chen},
title = {{WALT:} fast and accurate read mapping for bisulfite sequencing},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3507--3509},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw490},
doi = {10.1093/BIOINFORMATICS/BTW490},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSSBSKCKS16,
author = {Xiaoyu Chen and
Ole Schulz{-}Trieglaff and
Richard Shaw and
Bret Barnes and
Felix Schlesinger and
Morten K{\"{a}}llberg and
Anthony J. Cox and
Semyon Kruglyak and
Christopher T. Saunders},
title = {Manta: rapid detection of structural variants and indels for germline
and cancer sequencing applications},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1220--1222},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv710},
doi = {10.1093/BIOINFORMATICS/BTV710},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSSBSKCKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenY16,
author = {Ming{-}Huei Chen and
Qiong Yang},
title = {RVFam: an {R} package for rare variant association analysis with family
data},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {624--626},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv609},
doi = {10.1093/BIOINFORMATICS/BTV609},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenYZLYF16,
author = {Li Chen and
Yongyi Yu and
Xinchen Zhang and
Chen Liu and
Chuyu Ye and
Longjiang Fan},
title = {PcircRNA{\_}finder: a software for circRNA prediction in plants},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3528--3529},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw496},
doi = {10.1093/BIOINFORMATICS/BTW496},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenYZLYF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZ16,
author = {Jinyu Chen and
Shihua Zhang},
title = {Integrative analysis for identifying joint modular patterns of gene-expression
and drug-response data},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1724--1732},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw059},
doi = {10.1093/BIOINFORMATICS/BTW059},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengHLC16,
author = {Wei{-}Yi Cheng and
J{\"{o}}rg Hakenberg and
Shuyu Dan Li and
Rong Chen},
title = {{DIVAS:} a centralized genetic variant repository representing 150
000 individuals from multiple disease cohorts},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {151--153},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv511},
doi = {10.1093/BIOINFORMATICS/BTV511},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengHLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengMD16,
author = {Jun Cheng and
Franziska Metge and
Christoph Dieterich},
title = {Specific identification and quantification of circular RNAs from sequencing
data},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1094--1096},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv656},
doi = {10.1093/BIOINFORMATICS/BTV656},
timestamp = {Mon, 25 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengMD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CheonKC16,
author = {Mookyung Cheon and
Choongrak Kim and
Iksoo Chang},
title = {Uncovering multiloci-ordering by algebraic property of Laplacian matrix
and its Fiedler vector},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {801--807},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv669},
doi = {10.1093/BIOINFORMATICS/BTV669},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CheonKC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChevenetDSJJB16,
author = {Fran{\c{c}}ois Chevenet and
Jean{-}Philippe Doyon and
C{\'{e}}line Scornavacca and
Edwin Jacox and
Emmanuelle Jousselin and
Vincent Berry},
title = {SylvX: a viewer for phylogenetic tree reconciliations},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {608--610},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv625},
doi = {10.1093/BIOINFORMATICS/BTV625},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChevenetDSJJB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChikhiLM16,
author = {Rayan Chikhi and
Antoine Limasset and
Paul Medvedev},
title = {Compacting de Bruijn graphs from sequencing data quickly and in low
memory},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {201--208},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw279},
doi = {10.1093/BIOINFORMATICS/BTW279},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChikhiLM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChildsMBSL16,
author = {Liam Harold Childs and
Soulafa Mamlouk and
J{\"{o}}rgen Brandt and
Christine Sers and
Ulf Leser},
title = {SoFIA: a data integration framework for annotating high-throughput
datasets},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2590--2597},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw302},
doi = {10.1093/BIOINFORMATICS/BTW302},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChildsMBSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChimusaMMM16,
author = {Emile R. Chimusa and
Mamana Mbiyavanga and
Gaston K. Mazandu and
Nicola J. Mulder},
title = {ancGWAS: a post genome-wide association study method for interaction,
pathway and ancestry analysis in homogeneous and admixed populations},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {549--556},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv619},
doi = {10.1093/BIOINFORMATICS/BTV619},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChimusaMMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiuCZYPR16,
author = {Tsu{-}Pei Chiu and
Federico Comoglio and
Tianyin Zhou and
Lin Yang and
Renato Paro and
Remo Rohs},
title = {DNAshapeR: an R/Bioconductor package for {DNA} shape prediction and
feature encoding},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1211--1213},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv735},
doi = {10.1093/BIOINFORMATICS/BTV735},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiuCZYPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoudharySDLLA16,
author = {Krishna Choudhary and
Nathan P. Shih and
Fei Deng and
Mirko Ledda and
Bo Li and
Sharon Aviran},
title = {Metrics for rapid quality control in {RNA} structure probing experiments},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3575--3583},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw501},
doi = {10.1093/BIOINFORMATICS/BTW501},
timestamp = {Thu, 28 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoudharySDLLA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChowBCSTH16,
author = {William Chow and
Kim Br{\"{u}}gger and
Mario C{\'{a}}ccamo and
Ian Sealy and
James W. Torrance and
Kerstin Howe},
title = {gEVAL - a web-based browser for evaluating genome assemblies},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2508--2510},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw159},
doi = {10.1093/BIOINFORMATICS/BTW159},
timestamp = {Tue, 03 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChowBCSTH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChristinatPK16,
author = {Yann Christinat and
Rafal Pawlowski and
Wilhelm Krek},
title = {jSplice: a high-performance method for accurate prediction of alternative
splicing events and its application to large-scale renal cancer transcriptome
data},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2111--2119},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw145},
doi = {10.1093/BIOINFORMATICS/BTW145},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChristinatPK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CichonskaRMKSLR16,
author = {Anna Cichonska and
Juho Rousu and
Pekka Marttinen and
Antti J. Kangas and
Pasi Soininen and
Terho Lehtim{\"{a}}ki and
Olli T. Raitakari and
Marjo{-}Riitta J{\"{a}}rvelin and
Veikko Salomaa and
Mika Ala{-}Korpela and
Samuli Ripatti and
Matti Pirinen},
title = {metaCCA: summary statistics-based multivariate meta-analysis of genome-wide
association studies using canonical correlation analysis},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1981--1989},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw052},
doi = {10.1093/BIOINFORMATICS/BTW052},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CichonskaRMKSLR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CogillW16,
author = {Steven B. Cogill and
Liangjiang Wang},
title = {Support vector machine model of developmental brain gene expression
data for prioritization of Autism risk gene candidates},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3611--3618},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw498},
doi = {10.1093/BIOINFORMATICS/BTW498},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CogillW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Cohn-Alperovich16,
author = {Dalia Cohn{-}Alperovich and
Alona Rabner and
Ilona Kifer and
Yael Mandel{-}Gutfreund and
Zohar Yakhini},
title = {Mutual enrichment in aggregated ranked lists with applications to
gene expression regulation},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {464--472},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw435},
doi = {10.1093/BIOINFORMATICS/BTW435},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Cohn-Alperovich16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ColakKKOCVPEPKG16,
author = {Recep Colak and
TaeHyung Kim and
Hilal Kazan and
Yoomi Oh and
Miguel Cruz and
Adan Valladares{-}Salgado and
Jesus Peralta and
Jorge Escobedo and
Esteban J. Parra and
Philip M. Kim and
Anna Goldenberg},
title = {{JBASE:} Joint Bayesian Analysis of Subphenotypes and Epistasis},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {203--210},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv504},
doi = {10.1093/BIOINFORMATICS/BTV504},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ColakKKOCVPEPKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CommoGFBLSA16,
author = {Frederic Commo and
Justin Guinney and
Charles Fert{\'{e}} and
Brian M. Bot and
Celine Lefebvre and
Jean{-}Charles Soria and
Fabrice Andr{\'{e}}},
title = {rCGH: a comprehensive array-based genomic profile platform for precision
medicine},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1402--1404},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv718},
doi = {10.1093/BIOINFORMATICS/BTV718},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CommoGFBLSA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ConstantinescuS16,
author = {Simona Constantinescu and
Ewa Szczurek and
Pejman Mohammadi and
J{\"{o}}rg Rahnenf{\"{u}}hrer and
Niko Beerenwinkel},
title = {TiMEx: a waiting time model for mutually exclusive cancer alterations},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {968--975},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv400},
doi = {10.1093/BIOINFORMATICS/BTV400},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ConstantinescuS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Corbett-DetigJ16,
author = {Russell Corbett{-}Detig and
Matt Jones},
title = {{SELAM:} simulation of epistasis and local adaptation during admixture
with mate choice},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3035--3037},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw365},
doi = {10.1093/BIOINFORMATICS/BTW365},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Corbett-DetigJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorradoTCFP16,
author = {Gianluca Corrado and
Toma Tebaldi and
Fabrizio Costa and
Paolo Frasconi and
Andrea Passerini},
title = {RNAcommender: genome-wide recommendation of RNA-protein interactions},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3627--3634},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw517},
doi = {10.1093/BIOINFORMATICS/BTW517},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CorradoTCFP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Cortes-CirianoW16,
author = {Isidro Cortes{-}Ciriano and
Gerard J. P. van Westen and
Guillaume Bouvier and
Michael Nilges and
John P. Overington and
Andreas Bender and
Th{\'{e}}r{\`{e}}se E. Malliavin},
title = {Improved large-scale prediction of growth inhibition patterns using
the {NCI60} cancer cell line panel},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {85--95},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv529},
doi = {10.1093/BIOINFORMATICS/BTV529},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Cortes-CirianoW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CortinaK16,
author = {George A. Cortina and
Peter M. Kasson},
title = {Excess positional mutual information predicts both local and allosteric
mutations affecting beta lactamase drug resistance},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3420--3427},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw492},
doi = {10.1093/BIOINFORMATICS/BTW492},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CortinaK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrosetRR16,
author = {Samuel Croset and
Joachim Rupp and
Martin Romacker},
title = {Flexible data integration and curation using a graph-based approach},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {918--925},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv644},
doi = {10.1093/BIOINFORMATICS/BTV644},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CrosetRR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CruaudGRRG16,
author = {Astrid Cruaud and
Mathieu Gautier and
Jean{-}Pierre Rossi and
Jean{-}Yves Rasplus and
J{\'{e}}r{\^{o}}me Gouzy},
title = {\emph{RADIS: } analysis of \emph{RAD}-seq data for interspecific phylogeny},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3027--3028},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw352},
doi = {10.1093/BIOINFORMATICS/BTW352},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CruaudGRRG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuiCLFLHYZC16,
author = {Ya Cui and
Xiaowei Chen and
Huaxia Luo and
Zhen Fan and
Jianjun Luo and
Shunmin He and
Haiyan Yue and
Peng Zhang and
Runsheng Chen},
title = {BioCircos.js: an interactive Circos JavaScript library for biological
data visualization on web applications},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1740--1742},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw041},
doi = {10.1093/BIOINFORMATICS/BTW041},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuiCLFLHYZC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuiLWWG16,
author = {Xuefeng Cui and
Zhiwu Lu and
Sheng Wang and
Jim Jing{-}Yan Wang and
Xin Gao},
title = {CMsearch: simultaneous exploration of protein sequence space and structure
space improves not only protein homology detection but also protein
structure prediction},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {332--340},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw271},
doi = {10.1093/BIOINFORMATICS/BTW271},
timestamp = {Tue, 14 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuiLWWG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuiMZCH16,
author = {Xiaodong Cui and
Jia Meng and
Shaowu Zhang and
Yidong Chen and
Yufei Huang},
title = {A novel algorithm for calling mRNA m\({}^{\mbox{6}}\)A peaks by modeling
biological variances in MeRIP-seq data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {378--385},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw281},
doi = {10.1093/BIOINFORMATICS/BTW281},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuiMZCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuiSR16,
author = {Rongfeng Cui and
Molly Schumer and
Gil G. Rosenthal},
title = {Admix'em: a flexible framework for forward-time simulations of hybrid
populations with selection and mate choice},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1103--1105},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv700},
doi = {10.1093/BIOINFORMATICS/BTV700},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuiSR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuscoF16,
author = {Pol Cusc{\'{o}} and
Guillaume J. Filion},
title = {Zerone: a ChIP-seq discretizer for multiple replicates with built-in
quality control},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2896--2902},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw336},
doi = {10.1093/BIOINFORMATICS/BTW336},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuscoF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DadaevLSEK16,
author = {Tokhir Dadaev and
Daniel A. Leongamornlert and
Edward J. Saunders and
Rosalind A. Eeles and
Zsofia Kote{-}Jarai},
title = {LocusExplorer: a user-friendly tool for integrated visualization of
human genetic association data and biological annotations},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {949--951},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv690},
doi = {10.1093/BIOINFORMATICS/BTV690},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DadaevLSEK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DangG16,
author = {Utkarsh J. Dang and
Geoffrey Brian Golding},
title = {markophylo: Markov chain analysis on phylogenetic trees},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {130--132},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv541},
doi = {10.1093/BIOINFORMATICS/BTV541},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DangG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DangHKS16,
author = {Na Le Dang and
Tyler B. Hughes and
Varun Krishnamurthy and
S. Joshua Swamidass},
title = {A simple model predicts UGT-mediated metabolism},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3183--3189},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw350},
doi = {10.1093/BIOINFORMATICS/BTW350},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DangHKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaoFHLSC16,
author = {David Dao and
Adam Fraser and
Jane Hung and
Vebjorn Ljosa and
Shantanu Singh and
Anne E. Carpenter},
title = {CellProfiler Analyst: interactive data exploration, analysis and classification
of large biological image sets},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3210--3212},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw390},
doi = {10.1093/BIOINFORMATICS/BTW390},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaoFHLSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DarribaWS16,
author = {Diego Darriba and
Michael Wei{\ss} and
Alexandros Stamatakis},
title = {Prediction of missing sequences and branch lengths in phylogenomic
data},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1331--1337},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv768},
doi = {10.1093/BIOINFORMATICS/BTV768},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DarribaWS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasLSDLO16,
author = {Sayoni Das and
David A. Lee and
Ian Sillitoe and
Natalie L. Dawson and
Jonathan G. Lees and
Christine A. Orengo},
title = {Functional classification of {CATH} superfamilies: a domain-based
approach for protein function annotation},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2889},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw473},
doi = {10.1093/BIOINFORMATICS/BTW473},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasLSDLO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeGiorgioHHHN16,
author = {Michael Degiorgio and
Christian D. Huber and
Melissa J. Hubisz and
Ines Hellmann and
Rasmus Nielsen},
title = {SweepFinder2: increased sensitivity, robustness and flexibility},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1895--1897},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw051},
doi = {10.1093/BIOINFORMATICS/BTW051},
timestamp = {Mon, 12 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeGiorgioHHHN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeevaTSNK16,
author = {Anna A. Deeva and
Evgenia A. Temlyakova and
Anatoly A. Sorokin and
Elena V. Nemtseva and
Valentina A. Kratasyuk},
title = {Structural distinctions of fast and slow bacterial luciferases revealed
by phylogenetic analysis},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3053--3057},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw386},
doi = {10.1093/BIOINFORMATICS/BTW386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeevaTSNK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeghouZIDCNB16,
author = {Samy Deghou and
Georg Zeller and
Murat Iskar and
Marja Driessen and
Mercedes Castillo and
Vera van Noort and
Peer Bork},
title = {{CART} - a chemical annotation retrieval toolkit},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2869--2871},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw233},
doi = {10.1093/BIOINFORMATICS/BTW233},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeghouZIDCNB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DellicourRFLP16,
author = {Simon Dellicour and
Rebecca Rose and
Nuno R. Faria and
Philippe Lemey and
Oliver G. Pybus},
title = {{SERAPHIM:} studying environmental rasters and phylogenetically informed
movements},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3204--3206},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw384},
doi = {10.1093/BIOINFORMATICS/BTW384},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DellicourRFLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DengAW16,
author = {Yue Deng and
Steven J. Altschuler and
Lani F. Wu},
title = {{PHOCOS:} inferring multi-feature phenotypic crosstalk networks},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {44--51},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw251},
doi = {10.1093/BIOINFORMATICS/BTW251},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DengAW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DengJZ16,
author = {Haiyou Deng and
Ya Jia and
Yang Zhang},
title = {3DRobot: automated generation of diverse and well-packed protein structure
decoys},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {378--387},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv601},
doi = {10.1093/BIOINFORMATICS/BTV601},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DengJZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DenisT16,
author = {Marie Denis and
Mahlet G. Tadesse},
title = {Evaluation of hierarchical models for integrative genomic analyses},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {738--746},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv653},
doi = {10.1093/BIOINFORMATICS/BTV653},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DenisT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczGOHW16,
author = {Sebastian Deorowicz and
Szymon Grabowski and
Idoia Ochoa and
Mikel Hernaez and
Tsachy Weissman},
title = {Comment on: 'ERGC: an efficient referential genome compression algorithm'},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1115--1117},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv704},
doi = {10.1093/BIOINFORMATICS/BTV704},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczGOHW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DetrezVBVNLTV16,
author = {Jan R. Detrez and
Jean{-}Marie Vanderwinden and
Micha{\"{e}}l Barbier and
Marlies Verschuuren and
Rony Nuydens and
Xavier Langlois and
Jean{-}Pierre Timmermans and
Winnok De Vos},
title = {BiDiFuse: a {FIJI} plugin for fusing bi-directionally recorded microscopic
image volumes},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3691--3693},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw515},
doi = {10.1093/BIOINFORMATICS/BTW515},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DetrezVBVNLTV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DevaillyMJ16,
author = {Guillaume Devailly and
Anna Mantsoki and
Anagha Joshi},
title = {Heat*seq: an interactive web tool for high-throughput sequencing experiment
comparison with public data},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3354--3356},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw407},
doi = {10.1093/BIOINFORMATICS/BTW407},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DevaillyMJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiChiacchioSM16,
author = {Laura DiChiacchio and
Michael F. Sloma and
David H. Mathews},
title = {AccessFold: predicting {RNA-RNA} interactions with consideration for
competing self-structure},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1033--1039},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv682},
doi = {10.1093/BIOINFORMATICS/BTV682},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiChiacchioSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Diaz-MontanaRDP16,
author = {Juan J. Diaz{-}Montana and
Owen J. L. Rackham and
Norberto D{\'{\i}}az{-}D{\'{\i}}az and
Enrico Petretto},
title = {Web-based Gene Pathogenicity Analysis {(WGPA):} a web platform to
interpret gene pathogenicity from personal genome data},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {635--637},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv598},
doi = {10.1093/BIOINFORMATICS/BTV598},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Diaz-MontanaRDP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiazLSPNLK16,
author = {Aaron Diaz and
Siyuan J. Liu and
Carmen Sandoval and
Alex A. Pollen and
Tom J. Nowakowski and
Daniel A. Lim and
Arnold Kriegstein},
title = {SCell: integrated analysis of single-cell RNA-seq data},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2219--2220},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw201},
doi = {10.1093/BIOINFORMATICS/BTW201},
timestamp = {Thu, 23 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiazLSPNLK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingLH16,
author = {Jun Ding and
Xiaoman Li and
Haiyan Hu},
title = {TarPmiR: a new approach for microRNA target site prediction},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2768--2775},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw318},
doi = {10.1093/BIOINFORMATICS/BTW318},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingSC16,
author = {Jiarui Ding and
Sohrab P. Shah and
Anne Condon},
title = {densityCut: an efficient and versatile topological approach for automatic
clustering of biological data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2567--2576},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw227},
doi = {10.1093/BIOINFORMATICS/BTW227},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingZG16,
author = {Zijian Ding and
Songpeng Zu and
Jin Gu},
title = {Evaluating the molecule-based prediction of clinical drug responses
in cancer},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2891--2895},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw344},
doi = {10.1093/BIOINFORMATICS/BTW344},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingZG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DjordjevicKH16,
author = {Djordje Djordjevic and
Kenro Kusumi and
Joshua Wing Kei Ho},
title = {{XGSA:} {A} statistical method for cross-species gene set analysis},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {620--628},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw428},
doi = {10.1093/BIOINFORMATICS/BTW428},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DjordjevicKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DoganMSPBOM16,
author = {Tunca Dogan and
Alistair MacDougall and
Rabie Saidi and
Diego Poggioli and
Alex Bateman and
Claire O'Donovan and
Maria Jesus Martin},
title = {UniProt-DAAC: domain architecture alignment and classification, a
new method for automatic functional annotation in UniProtKB},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2264--2271},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw114},
doi = {10.1093/BIOINFORMATICS/BTW114},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DoganMSPBOM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DohmenKBK16,
author = {Elias Dohmen and
Lukas P. M. Kremer and
Erich Bornberg{-}Bauer and
Carsten Kemena},
title = {{DOGMA:} domain-based transcriptome and proteome quality assessment},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2577--2581},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw231},
doi = {10.1093/BIOINFORMATICS/BTW231},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DohmenKBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DohrmannS16,
author = {Jakob Dohrmann and
Rahul Singh},
title = {The {SMAL} web server: global multiple network alignment from pairwise
alignments},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3330--3332},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw402},
doi = {10.1093/BIOINFORMATICS/BTW402},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DohrmannS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DooleyPDH16,
author = {Damion M. Dooley and
Aaron J. Petkau and
Gary H. Van Domselaar and
William W. L. Hsiao},
title = {Sequence database versioning for command line and Galaxy bioinformatics
servers},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1275--1277},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv724},
doi = {10.1093/BIOINFORMATICS/BTV724},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DooleyPDH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DorriMB16,
author = {Faezeh Dorri and
Lee Mendelowitz and
H{\'{e}}ctor Corrada Bravo},
title = {methylFlow: cell-specific methylation pattern reconstruction from
high-throughput bisulfite-converted {DNA} sequencing},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1618--1624},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw287},
doi = {10.1093/BIOINFORMATICS/BTW287},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DorriMB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DozmorovCGW16,
author = {Mikhail G. Dozmorov and
Lukas R. Cara and
Cory B. Giles and
Jonathan D. Wren},
title = {GenomeRunner web server: regulatory similarity and differences define
the functional impact of {SNP} sets},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2256--2263},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw169},
doi = {10.1093/BIOINFORMATICS/BTW169},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DozmorovCGW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DraganMPBW16,
author = {Monica{-}Andreea Dragan and
Ismail Moghul and
Anurag Priyam and
Claudio Bustos and
Yannick Wurm},
title = {GeneValidator: identify problems with protein-coding gene predictions},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1559--1561},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw015},
doi = {10.1093/BIOINFORMATICS/BTW015},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DraganMPBW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Droop16,
author = {Alastair P. Droop},
title = {qsubsec: a lightweight template system for defining sun grid engine
workflows},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1267--1268},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv698},
doi = {10.1093/BIOINFORMATICS/BTV698},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Droop16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Droop16a,
author = {Alastair P. Droop},
title = {fqtools: an efficient software suite for modern {FASTQ} file manipulation},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1883--1884},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw088},
doi = {10.1093/BIOINFORMATICS/BTW088},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Droop16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuHYKRIMSS16,
author = {Lei Du and
Heng Huang and
Jingwen Yan and
Sungeun Kim and
Shannon L. Risacher and
Mark Inlow and
Jason H. Moore and
Andrew J. Saykin and
Li Shen},
title = {Structured sparse canonical correlation analysis for brain imaging
genetics: an improved GraphNet method},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1544--1551},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw033},
doi = {10.1093/BIOINFORMATICS/BTW033},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuHYKRIMSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuS16,
author = {Nan Du and
Yanni Sun},
title = {Improve homology search sensitivity of PacBio data by correcting frameshifts},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {529--537},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw458},
doi = {10.1093/BIOINFORMATICS/BTW458},
timestamp = {Wed, 16 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DucheneFH16,
author = {Sebasti{\'{a}}n Duch{\^{e}}ne and
Charles S. P. Foster and
Simon Y. W. Ho},
title = {Estimating the number and assignment of clock models in analyses of
multigene datasets},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1281--1285},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw005},
doi = {10.1093/BIOINFORMATICS/BTW005},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DucheneFH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DucheneGHH16,
author = {Sebasti{\'{a}}n Duch{\^{e}}ne and
Jemma L. Geoghegan and
Edward C. Holmes and
Simon Y. W. Ho},
title = {Estimating evolutionary rates using time-structured data: a general
comparison of phylogenetic methods},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3375--3379},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw421},
doi = {10.1093/BIOINFORMATICS/BTW421},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DucheneGHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DumasGD16,
author = {Jasmine Dumas and
Michael A. Gargano and
Garrett M. Dancik},
title = {\emph{shinyGEO}: a web-based application for analyzing gene expression
omnibus datasets},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3679--3681},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw519},
doi = {10.1093/BIOINFORMATICS/BTW519},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DumasGD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DunbarD16,
author = {James Dunbar and
Charlotte M. Deane},
title = {{ANARCI:} antigen receptor numbering and receptor classification},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {298--300},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv552},
doi = {10.1093/BIOINFORMATICS/BTV552},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DunbarD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuongZHSEHE16,
author = {Dat Duong and
Jennifer Zou and
Farhad Hormozdiari and
Jae Hoon Sul and
Jason Ernst and
Buhm Han and
Eleazar Eskin},
title = {Using genomic annotations increases statistical power to detect eGenes},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {156--163},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw272},
doi = {10.1093/BIOINFORMATICS/BTW272},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuongZHSEHE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuraiS16,
author = {Dilip A. Durai and
Marcel H. Schulz},
title = {Informed \emph{k}mer selection for \emph{de novo} transcriptome assembly},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1670--1677},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw217},
doi = {10.1093/BIOINFORMATICS/BTW217},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuraiS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DziubinskiDL16,
author = {Maciej Dziubinski and
Pawel Daniluk and
Bogdan Lesyng},
title = {ResiCon: a method for the identification of dynamic domains, hinges
and interfacial regions in proteins},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {25--34},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv525},
doi = {10.1093/BIOINFORMATICS/BTV525},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DziubinskiDL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EderGR16,
author = {Thomas Eder and
Florian Grebien and
Thomas Rattei},
title = {{NVT:} a fast and simple tool for the assessment of RNA-seq normalization
strategies},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3682--3684},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw521},
doi = {10.1093/BIOINFORMATICS/BTW521},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EderGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdsgardRS16,
author = {Daniel Edsg{\"{a}}rd and
Bj{\"{o}}rn Reinius and
Rickard Sandberg},
title = {scphaser: haplotype inference using single-cell RNA-seq data},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3038--3040},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw484},
doi = {10.1093/BIOINFORMATICS/BTW484},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdsgardRS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EidEH16,
author = {Fatma{-}Elzahraa Eid and
Mahmoud ElHefnawi and
Lenwood S. Heath},
title = {DeNovo: virus-host sequence-based protein-protein interaction prediction},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1144--1150},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv737},
doi = {10.1093/BIOINFORMATICS/BTV737},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EidEH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EkstromY16,
author = {Alexander Ekstrom and
Yanbin Yin},
title = {ORFanFinder: automated identification of taxonomically restricted
orphan genes},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2053--2055},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw122},
doi = {10.1093/BIOINFORMATICS/BTW122},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EkstromY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/El-MetwallyZH16,
author = {Sara El{-}Metwally and
Magdi Zakaria and
Taher Hamza},
title = {LightAssembler: fast and memory-efficient assembly algorithm for high-throughput
sequencing reads},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3215--3223},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw470},
doi = {10.1093/BIOINFORMATICS/BTW470},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/El-MetwallyZH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElhanatiMMW16,
author = {Yuval Elhanati and
Quentin Marcou and
Thierry Mora and
Aleksandra M. Walczak},
title = {repgenHMM: a dynamic programming tool to infer the rules of immune
receptor generation from sequence data},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1943--1951},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw112},
doi = {10.1093/BIOINFORMATICS/BTW112},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElhanatiMMW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EngB16,
author = {Alexander Eng and
Elhanan Borenstein},
title = {An algorithm for designing minimal microbial communities with desired
metabolic capacities},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2008--2016},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw107},
doi = {10.1093/BIOINFORMATICS/BTW107},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EngB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EwelsMLK16,
author = {Philip Ewels and
M{\aa}ns Magnusson and
Sverker Lundin and
Max K{\"{a}}ller},
title = {MultiQC: summarize analysis results for multiple tools and samples
in a single report},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3047--3048},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw354},
doi = {10.1093/BIOINFORMATICS/BTW354},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EwelsMLK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FabrisF16,
author = {Fabio Fabris and
Alex Alves Freitas},
title = {New {KEGG} pathway-based interpretable features for classifying ageing-related
mouse proteins},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2988--2995},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw363},
doi = {10.1093/BIOINFORMATICS/BTW363},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FabrisF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FahlgrenHCC16,
author = {Noah Fahlgren and
Steven T. Hill and
James C. Carrington and
Alberto Carbonell},
title = {{P-SAMS:} a web site for plant artificial microRNA and synthetic \emph{trans}-acting
small interfering {RNA} design},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {157--158},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv534},
doi = {10.1093/BIOINFORMATICS/BTV534},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FahlgrenHCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Faircloth16,
author = {Brant C. Faircloth},
title = {{PHYLUCE} is a software package for the analysis of conserved genomic
loci},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {786--788},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv646},
doi = {10.1093/BIOINFORMATICS/BTV646},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Faircloth16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FakhryPJ16,
author = {Ahmed Fakhry and
Hanchuan Peng and
Shuiwang Ji},
title = {Deep models for brain {EM} image segmentation: novel insights and
improved performance},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2352--2358},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw165},
doi = {10.1093/BIOINFORMATICS/BTW165},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FakhryPJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FanGLLABKS16,
author = {Sisi Fan and
Quentin Geissmann and
Eszter Lakatos and
Saulius Lukauskas and
Angelique Ale and
Ann C. Babtie and
Paul D. W. Kirk and
Michael P. H. Stumpf},
title = {{MEANS:} python package for Moment Expansion Approximation, iNference
and Simulation},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2863--2865},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw229},
doi = {10.1093/BIOINFORMATICS/BTW229},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FanGLLABKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FanLAWFW16,
author = {Shicai Fan and
Chengzhe Li and
Rizi Ai and
Mengchi Wang and
Gary S. Firestein and
Wei Wang},
title = {Computationally expanding infinium HumanMethylation450 BeadChip array
data to reveal distinct {DNA} methylation patterns of rheumatoid arthritis},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1773--1778},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw089},
doi = {10.1093/BIOINFORMATICS/BTW089},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FanLAWFW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FangLSXCW16,
author = {Jian Fang and
Dongdong Lin and
S. Charles Schulz and
Zongben Xu and
Vince D. Calhoun and
Yu{-}Ping Wang},
title = {Joint sparse canonical correlation analysis for detecting differential
imaging genetics modules},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3480--3488},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw485},
doi = {10.1093/BIOINFORMATICS/BTW485},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FangLSXCW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FarrelMG16,
author = {Alvin Farrel and
Jonathan Murphy and
Jun{-}tao Guo},
title = {Structure-based prediction of transcription factor binding specificity
using an integrative energy function},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {306--313},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw264},
doi = {10.1093/BIOINFORMATICS/BTW264},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FarrelMG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FenouilDSKMBCIF16,
author = {Romain Fenouil and
Nicolas Descostes and
Lionel Spinelli and
Frederic Koch and
Muhammad Ahmad Maqbool and
Touati Benoukraf and
Pierre Cauchy and
Charl{\`{e}}ne Innocenti and
Pierre Ferrier and
Jean{-}Christophe Andrau},
title = {Pasha: a versatile {R} package for piling chromatin {HTS} data},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2528--2530},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw206},
doi = {10.1093/BIOINFORMATICS/BTW206},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FenouilDSKMBCIF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FidanerCDKCO16,
author = {Isik Baris Fidaner and
Ayca Cankorur{-}Cetinkaya and
Duygu Dikicioglu and
Bet{\"{u}}l Kirdar and
Ali Taylan Cemgil and
Stephen G. Oliver},
title = {CLUSTERnGO: a user-defined modelling platform for two-stage clustering
of time-series data},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {388--397},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv532},
doi = {10.1093/BIOINFORMATICS/BTV532},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FidanerCDKCO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FirtinaA16,
author = {Can Firtina and
Can Alkan},
title = {On genomic repeats and reproducibility},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2243--2247},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw139},
doi = {10.1093/BIOINFORMATICS/BTW139},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FirtinaA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FischerR16,
author = {Martina Fischer and
Bernhard Y. Renard},
title = {iPQF: a new peptide-to-protein summarization method using peptide
spectra characteristics to improve protein quantification},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1040--1047},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv675},
doi = {10.1093/BIOINFORMATICS/BTV675},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FischerR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggK16,
author = {Christiana N. Fogg and
Diane E. Kovats},
title = {Message from the {ISCB:} 2016 {ISCB} Accomplishment by a Senior Scientist
Award Given to S{\o}ren Brunak},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1758--1759},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw291},
doi = {10.1093/BIOINFORMATICS/BTW291},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggK16a,
author = {Christiana N. Fogg and
Diane E. Kovats},
title = {Message from the {ISCB:} 2016 Outstanding Contributions to {ISCB}
Award: Burkhard Rost},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1760},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw292},
doi = {10.1093/BIOINFORMATICS/BTW292},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggK16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FortinoTG16,
author = {Vittorio Fortino and
Roberto Tagliaferri and
Dario Greco},
title = {{CONDOP:} an {R} package for CONdition-Dependent Operon Predictions},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3199--3200},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw330},
doi = {10.1093/BIOINFORMATICS/BTW330},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FortinoTG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoxSH16,
author = {Gearoid Fox and
Fabian Sievers and
Desmond G. Higgins},
title = {Using \emph{de novo} protein structure predictions to measure the
quality of very large multiple sequence alignments},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {814--820},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv592},
doi = {10.1093/BIOINFORMATICS/BTV592},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoxSH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FranceschiniLMJ16,
author = {Andrea Franceschini and
Jianyi Lin and
Christian von Mering and
Lars Juhl Jensen},
title = {SVD-phy: improved prediction of protein functional associations through
singular value decomposition of phylogenetic profiles},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1085--1087},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv696},
doi = {10.1093/BIOINFORMATICS/BTV696},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FranceschiniLMJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FranzLHDSB16,
author = {Max Franz and
Christian Tannus Lopes and
Gerardo Huck and
Yue Dong and
Sel{\c{c}}uk Onur S{\"{u}}mer and
Gary D. Bader},
title = {Cytoscape.js: a graph theory library for visualisation and analysis},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {309--311},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv557},
doi = {10.1093/BIOINFORMATICS/BTV557},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FranzLHDSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FreeseNL16,
author = {Nowlan H. Freese and
David C. Norris and
Ann E. Loraine},
title = {Integrated genome browser: visual analytics platform for genomics},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2089--2095},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw069},
doi = {10.1093/BIOINFORMATICS/BTW069},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FreeseNL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Frias-LopezSGMA16,
author = {Cristina Fr{\'{\i}}as{-}L{\'{o}}pez and
Jos{\'{e}} F. S{\'{a}}nchez{-}Herrero and
Sara Guirao{-}Rico and
Elisa Mora and
Miquel A. Arnedo and
Alejandro S{\'{a}}nchez{-}Gracia and
Julio Rozas},
title = {{DOMINO:} development of informative molecular markers for phylogenetic
and genome-wide population genetic studies in non-model organisms},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3753--3759},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw534},
doi = {10.1093/BIOINFORMATICS/BTW534},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Frias-LopezSGMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrickeM16,
author = {Markus Fricke and
Manja Marz},
title = {Prediction of conserved long-range {RNA-RNA} interactions in full
viral genomes},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2928--2935},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw323},
doi = {10.1093/BIOINFORMATICS/BTW323},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrickeM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrishbergBSG16,
author = {Amit Frishberg and
Avital Brodt and
Yael Steuerman and
Irit Gat{-}Viks},
title = {ImmQuant: a user-friendly tool for inferring immune cell-type composition
from gene-expression data},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3842--3843},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw535},
doi = {10.1093/BIOINFORMATICS/BTW535},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrishbergBSG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuWYY16,
author = {Guangyuan Fu and
Jun Wang and
Bo Yang and
Guo{-}Xian Yu},
title = {NegGOA: negative {GO} annotations selection using ontology structure},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2996--3004},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw366},
doi = {10.1093/BIOINFORMATICS/BTW366},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuWYY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaffneyT16,
author = {Stephen G. Gaffney and
Jeffrey P. Townsend},
title = {PathScore: a web tool for identifying altered pathways in cancer data},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3688--3690},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw512},
doi = {10.1093/BIOINFORMATICS/BTW512},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaffneyT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaliezMCB16,
author = {Clovis Galiez and
Christophe N. Magnan and
Fran{\c{c}}ois Coste and
Pierre Baldi},
title = {VIRALpro: a tool to identify viral capsid and tail sequences},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1405--1407},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv727},
doi = {10.1093/BIOINFORMATICS/BTV727},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaliezMCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GangavarapuBMSG16,
author = {Karthik Gangavarapu and
Vyshakh Babji and
Tobias Mei{\ss}ner and
Andrew I. Su and
Benjamin M. Good},
title = {Branch: an interactive, web-based tool for testing hypotheses and
developing predictive models},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2072--2074},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw117},
doi = {10.1093/BIOINFORMATICS/BTW117},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GangavarapuBMSG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoHLZTQ16,
author = {Tianshun Gao and
Bing He and
Sheng Liu and
Heng Zhu and
Kai Tan and
Jiang Qian},
title = {EnhancerAtlas: a resource for enhancer annotation and analysis in
105 human cell/tissue types},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3543--3551},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw495},
doi = {10.1093/BIOINFORMATICS/BTW495},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoHLZTQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoOCJ0C16,
author = {Qiaozi Gao and
Elisabeth Ostendorf and
Jeffrey A. Cruz and
Rong Jin and
David M. Kramer and
Jin Chen},
title = {Inter-functional analysis of high-throughput phenotype data by non-parametric
clustering and its application to photosynthesis},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {67--76},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv515},
doi = {10.1093/BIOINFORMATICS/BTV515},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoOCJ0C16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoYZ16,
author = {Jianzhao Gao and
Yuedong Yang and
Yaoqi Zhou},
title = {Predicting the errors of predicted local backbone angles and non-local
solvent- accessibilities of proteins by deep neural networks},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3768--3773},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw549},
doi = {10.1093/BIOINFORMATICS/BTW549},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoYZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Garcia-GarciaPD16,
author = {Francisco Garc{\'{\i}}a{-}Garc{\'{\i}}a and
Joaquin Panadero and
Joaqu{\'{\i}}n Dopazo and
David Montaner},
title = {Integrated gene set analysis for microRNA studies},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2809--2816},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw334},
doi = {10.1093/BIOINFORMATICS/BTW334},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Garcia-GarciaPD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Garcia-MartinDF16,
author = {Juan Antonio Garc{\'{\i}}a{-}Mart{\'{\i}}n and
Iv{\'{a}}n Dot{\'{u}} and
Javier Fernandez{-}Chamorro and
Gloria Lozano and
Jorge Ramajo and
Encarnacion Martinez{-}Salas and
Peter Clote},
title = {RNAiFold2T: Constraint Programming design of thermo-IRES switches},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {360--368},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw265},
doi = {10.1093/BIOINFORMATICS/BTW265},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Garcia-MartinDF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GargMM16,
author = {Shilpa Garg and
Marcel Martin and
Tobias Marschall},
title = {Read-based phasing of related individuals},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {234--242},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw276},
doi = {10.1093/BIOINFORMATICS/BTW276},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GargMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GasparOFSM16,
author = {Paulo Gaspar and
Jos{\'{e}} Lu{\'{\i}}s Oliveira and
J{\"{o}}rg Frommlet and
Manuel A. S. Santos and
Gabriela R. Moura},
title = {Corrigendum: EuGene: maximizing synthetic gene design for heterologous
expression},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1120},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw063},
doi = {10.1093/BIOINFORMATICS/BTW063},
timestamp = {Tue, 26 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GasparOFSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeissenHHHTR16,
author = {Eva{-}Maria Geissen and
Jan Hasenauer and
Stephanie Heinrich and
Silke Hauf and
Fabian J. Theis and
Nicole Radde},
title = {{MEMO:} multi-experiment mixture model analysis of censored data},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2464--2472},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw190},
doi = {10.1093/BIOINFORMATICS/BTW190},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeissenHHHTR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GelDSBPM16,
author = {Bernat Gel and
Anna D{\'{\i}}ez{-}Villanueva and
Eduard Serra and
Marcus Buschbeck and
Miguel A. Peinado and
Roberto Malinverni},
title = {regioneR: an R/Bioconductor package for the association analysis of
genomic regions based on permutation tests},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {289--291},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv562},
doi = {10.1093/BIOINFORMATICS/BTV562},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GelDSBPM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GencD16,
author = {Beg{\"{u}}m Gen{\c{c}} and
Ugur Dogrusoz},
title = {An algorithm for automated layout of process description maps drawn
in {SBGN}},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {77--84},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv516},
doi = {10.1093/BIOINFORMATICS/BTV516},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GencD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GendooRSPPPH16,
author = {Deena M. A. Gendoo and
Natchar Ratanasirigulchai and
Markus S. Schr{\"{o}}der and
Laia Par{\'{e}} and
Joel S. Parker and
Aleix Prat and
Benjamin Haibe{-}Kains},
title = {Genefu: an R/Bioconductor package for computation of gene expression-based
signatures in breast cancer},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1097--1099},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv693},
doi = {10.1093/BIOINFORMATICS/BTV693},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GendooRSPPPH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GerritsenPAB16,
author = {Bram Gerritsen and
Aridaman Pandit and
Arno C. Andeweg and
Rob J. De Boer},
title = {{RTCR:} a pipeline for complete and accurate recovery of {T} cell
repertoires from high throughput sequencing data},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3098--3106},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw339},
doi = {10.1093/BIOINFORMATICS/BTW339},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GerritsenPAB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GerstlKJZ16,
author = {Matthias P. Gerstl and
Steffen Klamt and
Christian Jungreuthmayer and
J{\"{u}}rgen Zanghellini},
title = {Exact quantification of cellular robustness in genome-scale metabolic
networks},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {730--737},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv649},
doi = {10.1093/BIOINFORMATICS/BTV649},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GerstlKJZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhaffarizadehFM16,
author = {Ahmadreza Ghaffarizadeh and
Samuel H. Friedman and
Paul Macklin},
title = {BioFVM: an efficient, parallelized diffusive transport solver for
3-D biological simulations},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1256--1258},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv730},
doi = {10.1093/BIOINFORMATICS/BTV730},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhaffarizadehFM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhandiNGLGB16,
author = {Mahmoud Ghandi and
Morteza Mohammad Noori and
Narges Ghareghani and
Dongwon Lee and
Levi A. Garraway and
Michael A. Beer},
title = {gkmSVM: an {R} package for gapped-kmer {SVM}},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2205--2207},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw203},
doi = {10.1093/BIOINFORMATICS/BTW203},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhandiNGLGB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gilpin16,
author = {William Gilpin},
title = {PyPDB: a Python {API} for the Protein Data Bank},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {159--160},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv543},
doi = {10.1093/BIOINFORMATICS/BTV543},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gilpin16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GirottoPC16,
author = {Samuele Girotto and
Cinzia Pizzi and
Matteo Comin},
title = {MetaProb: accurate metagenomic reads binning based on probabilistic
sequence signatures},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {567--575},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw466},
doi = {10.1093/BIOINFORMATICS/BTW466},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GirottoPC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlicksbergLBSKB16,
author = {Benjamin S. Glicksberg and
Li Li and
Marcus A. Badgeley and
Khader Shameer and
Roman Kosoy and
Noam D. Beckmann and
Nam Pho and
J{\"{o}}rg Hakenberg and
Meng Ma and
Kristin L. Ayers and
Gabriel E. Hoffman and
Shuyu Dan Li and
Eric E. Schadt and
Chirag J. Patel and
Rong Chen and
Joel T. Dudley},
title = {Comparative analyses of population-scale phenomic data in electronic
medical records reveal race-specific disease networks},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {101--110},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw282},
doi = {10.1093/BIOINFORMATICS/BTW282},
timestamp = {Sat, 18 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlicksbergLBSKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GligorijevicMP16,
author = {Vladimir Gligorijevic and
No{\"{e}}l Malod{-}Dognin and
Natasa Przulj},
title = {Fuse: multiple network alignment via data fusion},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1195--1203},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv731},
doi = {10.1093/BIOINFORMATICS/BTV731},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GligorijevicMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoenawanBL16,
author = {Ivan H. Goenawan and
Kenneth Bryan and
David J. Lynn},
title = {DyNet: visualization and analysis of dynamic molecular interaction
networks},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2713--2715},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw187},
doi = {10.1093/BIOINFORMATICS/BTW187},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoenawanBL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldfarbWM16,
author = {Dennis Goldfarb and
Wei Wang and
Michael B. Major},
title = {MSAcquisitionSimulator: data-dependent acquisition simulator for {LC-MS}
shotgun proteomics},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1269--1271},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv745},
doi = {10.1093/BIOINFORMATICS/BTV745},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldfarbWM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoleOBYA16,
author = {Laurent Gole and
Kok Haur Ong and
Thomas Boudier and
Weimiao Yu and
Sohail Ahmed},
title = {OpenSegSPIM: a user-friendly segmentation tool for {SPIM} data},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2075--2077},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw093},
doi = {10.1093/BIOINFORMATICS/BTW093},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoleOBYA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GolumbeanuMB16,
author = {Monica Golumbeanu and
Pejman Mohammadi and
Niko Beerenwinkel},
title = {BMix: probabilistic modeling of occurring substitutions in {PAR-CLIP}
data},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {976--983},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv520},
doi = {10.1093/BIOINFORMATICS/BTV520},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GolumbeanuMB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GomezHKNIS16,
author = {Harold F. G{\'{o}}mez and
Michael Hucka and
Sarah M. Keating and
German Nudelman and
Dagmar Iber and
Stuart C. Sealfon},
title = {{MOCCASIN:} converting {MATLAB} {ODE} models to {SBML}},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1905--1906},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw056},
doi = {10.1093/BIOINFORMATICS/BTW056},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GomezHKNIS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gonzalez-Dominguez16,
author = {Jorge Gonz{\'{a}}lez{-}Dom{\'{\i}}nguez and
Bertil Schmidt},
title = {ParDRe: faster parallel duplicated reads removal tool for sequencing
studies},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1562--1564},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw038},
doi = {10.1093/BIOINFORMATICS/BTW038},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gonzalez-Dominguez16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gonzalez-Dominguez16a,
author = {Jorge Gonz{\'{a}}lez{-}Dom{\'{\i}}nguez and
Yongchao Liu and
Juan Touri{\~{n}}o and
Bertil Schmidt},
title = {MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory
systems},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3826--3828},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw558},
doi = {10.1093/BIOINFORMATICS/BTW558},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gonzalez-Dominguez16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoodVGRPER16,
author = {Robert T. Good and
Temi Varghese and
John Golz and
Derek A. Russell and
Alexie Papanicolaou and
Owain Edwards and
Charles Robin},
title = {OfftargetFinder: a web tool for species-specific RNAi design},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1232--1234},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv747},
doi = {10.1093/BIOINFORMATICS/BTV747},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoodVGRPER16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrantJBN16,
author = {Charles E. Grant and
James Johnson and
Timothy L. Bailey and
William Stafford Noble},
title = {{MCAST:} scanning for \emph{cis}-regulatory motif clusters},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1217--1219},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv750},
doi = {10.1093/BIOINFORMATICS/BTV750},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrantJBN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GreenfieldSR16,
author = {Daniel L. Greenfield and
Oliver Stegle and
Alban Rrustemi},
title = {GeneCodeq: quality score compression and improved genotyping using
a Bayesian framework},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3124--3132},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw385},
doi = {10.1093/BIOINFORMATICS/BTW385},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GreenfieldSR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GregorSM16,
author = {I. Gregor and
Alexander Sch{\"{o}}nhuth and
Alice Carolyn McHardy},
title = {\emph{Snowball}: strain aware gene assembly of metagenomes},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {649--657},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw426},
doi = {10.1093/BIOINFORMATICS/BTW426},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GregorSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrotePKD16,
author = {Steffi Grote and
Kay Pr{\"{u}}fer and
Janet Kelso and
Michael Dannemann},
title = {ABAEnrichment: an {R} package to test for gene set expression enrichment
in the adult and developing human brain},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3201--3203},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw392},
doi = {10.1093/BIOINFORMATICS/BTW392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrotePKD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuES16,
author = {Zuguang Gu and
Roland Eils and
Matthias Schlesner},
title = {HilbertCurve: an R/Bioconductor package for high-resolution visualization
of genomic data},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2372--2374},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw161},
doi = {10.1093/BIOINFORMATICS/BTW161},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuES16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuES16a,
author = {Zuguang Gu and
Roland Eils and
Matthias Schlesner},
title = {Complex heatmaps reveal patterns and correlations in multidimensional
genomic data},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2847--2849},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw313},
doi = {10.1093/BIOINFORMATICS/BTW313},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuES16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gudbjartsson16,
author = {H{\'{a}}kon Gu{\dh}bjartsson and
Gu{\dh}mundur Fr. Georgsson and
Sigurj{\'{o}}n Axel Gu{\dh}j{\'{o}}nsson and
Ragnar {\th}{\'{o}}r Valdimarsson and
J{\'{o}}hann H. Sigur{\dh}sson and
Sigmar K. Stef{\'{a}}nsson and
G{\'{\i}}sli M{\'{a}}sson and
G{\'{\i}}sli Magn{\'{u}}sson and
Vilmundur P{\'{a}}lmason and
K{\'{a}}ri Stef{\'{a}}nsson},
title = {GORpipe: a query tool for working with sequence data based on a Genomic
Ordered Relational {(GOR)} architecture},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3081--3088},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw199},
doi = {10.1093/BIOINFORMATICS/BTW199},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gudbjartsson16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuillotJHMO16,
author = {Gilles Guillot and
H{\'{a}}kon J{\'{o}}nsson and
Antoine Hinge and
Nabil Manchih and
Ludovic Orlando},
title = {Accurate continuous geographic assignment from low- to high-density
{SNP} data},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1106--1108},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv703},
doi = {10.1093/BIOINFORMATICS/BTV703},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuillotJHMO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GunawanLZ16,
author = {Andreas D. M. Gunawan and
Bingxin Lu and
Louxin Zhang},
title = {A program for verification of phylogenetic network models},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {503--510},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw467},
doi = {10.1093/BIOINFORMATICS/BTW467},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GunawanLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaghshenasHSC16,
author = {Ehsan Haghshenas and
Faraz Hach and
S{\"{u}}leyman Cenk Sahinalp and
C{\'{e}}dric Chauve},
title = {CoLoRMap: Correcting Long Reads by Mapping short reads},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {545--551},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw463},
doi = {10.1093/BIOINFORMATICS/BTW463},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaghshenasHSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaiderKS16,
author = {Christian Haider and
Marina Kavic and
Erik L. L. Sonnhammer},
title = {TreeDom: a graphical web tool for analysing domain architecture evolution},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2384--2385},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw140},
doi = {10.1093/BIOINFORMATICS/BTW140},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaiderKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakkinenR16,
author = {Antti H{\"{a}}kkinen and
Andre S. Ribeiro},
title = {Characterizing rate limiting steps in transcription from {RNA} production
times in live cells},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1346--1352},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv744},
doi = {10.1093/BIOINFORMATICS/BTV744},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakkinenR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakobyanNA16,
author = {Anna Hakobyan and
Lilit Nersisyan and
Arsen Arakelyan},
title = {Quantitative trait association study for mean telomere length in the
South Asian genomes},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1697--1700},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw027},
doi = {10.1093/BIOINFORMATICS/BTW027},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakobyanNA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HammarenPB16,
author = {Rickard Hammar{\'{e}}n and
Chandan Pal and
Johan Bengtsson{-}Palme},
title = {{FARAO:} the flexible all-round annotation organizer},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3664--3666},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw499},
doi = {10.1093/BIOINFORMATICS/BTW499},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HammarenPB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HansonKH16,
author = {Niels W. Hanson and
Kishori M. Konwar and
Steven J. Hallam},
title = {LCA*: an entropy-based measure for taxonomic assignment within assembled
metagenomes},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3535--3542},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw400},
doi = {10.1093/BIOINFORMATICS/BTW400},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HansonKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoSS16,
author = {Wei Hao and
Minsun Song and
John D. Storey},
title = {Probabilistic models of genetic variation in structured populations
applied to global human studies},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {713--721},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv641},
doi = {10.1093/BIOINFORMATICS/BTV641},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoT16,
author = {Yun Hao and
Nicholas P. Tatonetti},
title = {Predicting {G} protein-coupled receptor downstream signaling by tissue
expression},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3435--3443},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw510},
doi = {10.1093/BIOINFORMATICS/BTW510},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Hardcastle16,
author = {Thomas J. Hardcastle},
title = {Generalized empirical Bayesian methods for discovery of differential
data in high-throughput biology},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {195--202},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv569},
doi = {10.1093/BIOINFORMATICS/BTV569},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Hardcastle16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisHTSGKABSF16,
author = {Leonard A. Harris and
Justin S. Hogg and
Jos{\'{e}} Juan Tapia and
John A. P. Sekar and
Sanjana Gupta and
Ilya Korsunsky and
Arshi Arora and
Dipak Barua and
Robert P. Sheehan and
James R. Faeder},
title = {BioNetGen 2.2: advances in rule-based modeling},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3366--3368},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw469},
doi = {10.1093/BIOINFORMATICS/BTW469},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisHTSGKABSF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisOL16,
author = {Elena Yavorska Harris and
Rachid Ounit and
Stefano Lonardi},
title = {BRAT-nova: fast and accurate mapping of bisulfite-treated reads},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2696--2698},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw226},
doi = {10.1093/BIOINFORMATICS/BTW226},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisOL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HartasanchezBFV16,
author = {Diego A. Hartas{\'{a}}nchez and
Marina Bras{\'{o}}{-}Vives and
Juanma Fuentes{-}D{\'{\i}}az and
Oriol Vall{\`{e}}s{-}Codina and
Arcadi Navarro},
title = {SeDuS: segmental duplication simulator},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {148--150},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv481},
doi = {10.1093/BIOINFORMATICS/BTV481},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HartasanchezBFV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HartonenSDKT16,
author = {Tuomo Hartonen and
Biswajyoti Sahu and
Kashyap Dave and
Teemu Kivioja and
Jussi Taipale},
title = {PeakXus: comprehensive transcription factor binding site discovery
from ChIP-Nexus and ChIP-Exo experiments},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {629--638},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw448},
doi = {10.1093/BIOINFORMATICS/BTW448},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HartonenSDKT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashemifarMNCX16,
author = {Somaye Hashemifar and
Jianzhu Ma and
Hammad Naveed and
Stefan Canzar and
Jinbo Xu},
title = {ModuleAlign: module-based global alignment of protein-protein interaction
networks},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {658--664},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw447},
doi = {10.1093/BIOINFORMATICS/BTW447},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashemifarMNCX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HassKTK16,
author = {Helge Hass and
Clemens Kreutz and
Jens Timmer and
Daniel Kaschek},
title = {Fast integration-based prediction bands for ordinary differential
equation models},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1204--1210},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv743},
doi = {10.1093/BIOINFORMATICS/BTV743},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HassKTK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HauserSS16,
author = {Maria Hauser and
Martin Steinegger and
Johannes S{\"{o}}ding},
title = {MMseqs software suite for fast and deep clustering and searching of
large protein sequence sets},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1323--1330},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw006},
doi = {10.1093/BIOINFORMATICS/BTW006},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HauserSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayakawaFM16,
author = {Eisuke Hayakawa and
Yoshinori Fujimura and
Daisuke Miura},
title = {MSIdV: a versatile tool to visualize biological indices from mass
spectrometry imaging data},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3852--3854},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw548},
doi = {10.1093/BIOINFORMATICS/BTW548},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayakawaFM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayatPSTE16,
author = {Sikander Hayat and
Christoph Peters and
Nanjiang Shu and
Konstantinos D. Tsirigos and
Arne Elofsson},
title = {Inclusion of dyad-repeat pattern improves topology prediction of transmembrane
{\(\beta\)}-barrel proteins},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1571--1573},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw025},
doi = {10.1093/BIOINFORMATICS/BTW025},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayatPSTE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaydarlouJBFAH16,
author = {Reza Haydarlou and
Annika Jacobsen and
Nicola Bonzanni and
K. Anton Feenstra and
Sanne Abeln and
Jaap Heringa},
title = {BioASF: a framework for automatically generating executable pathway
models specified in BioPAX},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {60--69},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw250},
doi = {10.1093/BIOINFORMATICS/BTW250},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaydarlouJBFAH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeKP16,
author = {Dan He and
David Kuhn and
Laxmi Parida},
title = {Novel applications of multitask learning and multiple output regression
to multiple genetic trait prediction},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {37--43},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw249},
doi = {10.1093/BIOINFORMATICS/BTW249},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeKP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeLZLLAHJLWL16,
author = {Kevin He and
Yanming Li and
Ji Zhu and
Hongliang Liu and
Jeffrey E. Lee and
Christopher I. Amos and
Terry Hyslop and
Jiashun Jin and
Huazhen Lin and
Qinyi Wei and
Yi Li},
title = {Component-wise gradient boosting and false discovery control in survival
analysis with high-dimensional covariates},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {50--57},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv517},
doi = {10.1093/BIOINFORMATICS/BTV517},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeLZLLAHJLWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeffernanDLPSWS16,
author = {Rhys Heffernan and
Abdollah Dehzangi and
James G. Lyons and
Kuldip K. Paliwal and
Alok Sharma and
Jihua Wang and
Abdul Sattar and
Yaoqi Zhou and
Yuedong Yang},
title = {Highly accurate sequence-based prediction of half-sphere exposures
of amino acid residues in proteins},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {843--849},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv665},
doi = {10.1093/BIOINFORMATICS/BTV665},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeffernanDLPSWS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HendenWB16,
author = {Lyndal Henden and
David Wakeham and
Melanie Bahlo},
title = {{XIBD:} software for inferring pairwise identity by descent on the
{X} chromosome},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2389--2391},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw124},
doi = {10.1093/BIOINFORMATICS/BTW124},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HendenWB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeoRHMC16,
author = {Yun Heo and
Anand Ramachandran and
Wen{-}mei W. Hwu and
Jian Ma and
Deming Chen},
title = {{BLESS} 2: accurate, memory-efficient and fast error correction method},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2369--2371},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw146},
doi = {10.1093/BIOINFORMATICS/BTW146},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeoRHMC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeringaRAR16,
author = {Jaap Heringa and
Marcel J. T. Reinders and
Sanne Abeln and
Jeroen de Ridder},
title = {{ECCB} 2016: The 15th European Conference on Computational Biology},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {389--392},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw481},
doi = {10.1093/BIOINFORMATICS/BTW481},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeringaRAR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HilkerSSAJWZG16,
author = {Rolf Hilker and
Kai Bernd Stadermann and
Oliver Schwengers and
Evgeny Anisiforov and
Sebastian Jaenicke and
Bernd Weisshaar and
Tobias Zimmermann and
Alexander Goesmann},
title = {ReadXplorer 2 - detailed read mapping analysis and visualization from
one single source},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3702--3708},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw541},
doi = {10.1093/BIOINFORMATICS/BTW541},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HilkerSSAJWZG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HillenmeyerDGCC16,
author = {Sara Hillenmeyer and
Lea K. Davis and
Eric R. Gamazon and
Edwin H. Cook Jr. and
Nancy J. Cox and
Russ B. Altman},
title = {{STAMS:} STRING-assisted module search for genome wide association
studies and application to autism},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3815--3822},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw530},
doi = {10.1093/BIOINFORMATICS/BTW530},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HillenmeyerDGCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HinrichsRSRCKKR16,
author = {Angie S. Hinrichs and
Brian J. Raney and
Matthew L. Speir and
Brooke L. Rhead and
Jonathan Casper and
Donna Karolchik and
Robert M. Kuhn and
Kate R. Rosenbloom and
Ann S. Zweig and
David Haussler and
W. James Kent},
title = {{UCSC} Data Integrator and Variant Annotation Integrator},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1430--1432},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv766},
doi = {10.1093/BIOINFORMATICS/BTV766},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HinrichsRSRCKKR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HodorCCN16,
author = {Paul Hodor and
Amandeep Chawla and
Andrew Clark and
Lauren Neal},
title = {cl-dash: rapid configuration and deployment of Hadoop clusters for
bioinformatics research in the cloud},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {301--303},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv553},
doi = {10.1093/BIOINFORMATICS/BTV553},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HodorCCN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoffLLBS16,
author = {Katharina Jasmin Hoff and
Simone Lange and
Alexandre Lomsadze and
Mark Borodovsky and
Mario Stanke},
title = {{BRAKER1:} Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET
and {AUGUSTUS}},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {767--769},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv661},
doi = {10.1093/BIOINFORMATICS/BTV661},
timestamp = {Tue, 24 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoffLLBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HohnaMM16,
author = {Sebastian H{\"{o}}hna and
Michael R. May and
Brian R. Moore},
title = {{TESS:} an {R} package for efficiently simulating phylogenetic trees
and performing Bayesian inference of lineage diversification rates},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {789--791},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv651},
doi = {10.1093/BIOINFORMATICS/BTV651},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HohnaMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HolzhauserGZ16,
author = {Erwin Holzhauser and
Ping Ge and
Shaojie Zhang},
title = {WebSTAR3D: a web server for {RNA} 3D structural alignment},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3673--3675},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw502},
doi = {10.1093/BIOINFORMATICS/BTW502},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HolzhauserGZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HongK16,
author = {Seungpyo Hong and
Dongsup Kim},
title = {Library of binding protein scaffolds (LibBP): a computational platform
for selection of binding protein scaffolds},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1709--1715},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw032},
doi = {10.1093/BIOINFORMATICS/BTW032},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HongK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoogstrateBHSJS16,
author = {Youri Hoogstrate and
Ren{\'{e}} B{\"{o}}ttcher and
Saskia D. Hiltemann and
Peter J. van der Spek and
Guido Jenster and
Andrew Stubbs},
title = {FuMa: reporting overlap in RNA-seq detected fusion genes},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1226--1228},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv721},
doi = {10.1093/BIOINFORMATICS/BTV721},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoogstrateBHSJS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HosnyVLF16,
author = {Abdelrahman Hosny and
Paola Vera{-}Licona and
Reinhard C. Laubenbacher and
Thibauld Favre},
title = {AlgoRun: a Docker-based packaging system for platform-agnostic implemented
algorithms},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2396--2398},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw120},
doi = {10.1093/BIOINFORMATICS/BTW120},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HosnyVLF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HouEPMM16,
author = {Jack P. Hou and
Amin Emad and
Gregory J. Puleo and
Jian Ma and
Olgica Milenkovic},
title = {A new correlation clustering method for cancer mutation analysis},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3717--3728},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw546},
doi = {10.1093/BIOINFORMATICS/BTW546},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouEPMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HourdelVOCCDB16,
author = {V{\'{e}}ronique Hourdel and
Stevenn Volant and
Darragh P. O'Brien and
Alexandre Chenal and
Julia Chamot{-}Rooke and
Marie{-}Agn{\`{e}}s Dillies and
S{\'{e}}bastien Brier},
title = {{MEMHDX:} an interactive tool to expedite the statistical validation
and visualization of large {HDX-MS} datasets},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3413--3419},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw420},
doi = {10.1093/BIOINFORMATICS/BTW420},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HourdelVOCCDB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HousemanJC16,
author = {Eugene Andres Houseman and
Kevin C. Johnson and
Brock C. Christensen},
title = {OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine
from tandem-treated oxidative bisulfite and bisulfite {DNA}},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2505--2507},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw158},
doi = {10.1093/BIOINFORMATICS/BTW158},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HousemanJC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HrabeJG16,
author = {Thomas Hrabe and
Lukasz Jaroszewski and
Adam Godzik},
title = {Revealing aperiodic aspects of solenoid proteins from sequence information},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2776--2782},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw319},
doi = {10.1093/BIOINFORMATICS/BTW319},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HrabeJG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HrossH16,
author = {Sabrina Hross and
Jan Hasenauer},
title = {Analysis of {CFSE} time-series data using division-, age- and label-structured
population models},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2321--2329},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw131},
doi = {10.1093/BIOINFORMATICS/BTW131},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HrossH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HsuKPGSL16,
author = {Jacob Shujui Hsu and
Johnny S. H. Kwan and
Zhicheng Pan and
Maria{-}Merc{\`{e}} Garcia{-}Barcelo and
Pak Chung Sham and
Miao{-}Xin Li},
title = {Inheritance-mode specific pathogenicity prioritization {(ISPP)} for
human protein coding genes},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3065--3071},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw381},
doi = {10.1093/BIOINFORMATICS/BTW381},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HsuKPGSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuDYZ16,
author = {Xiuzhen Hu and
Qiwen Dong and
Jianyi Yang and
Yang Zhang},
title = {Recognizing metal and acid radical ion-binding sites by integrating
\emph{ab initio} modeling with template-based transferals},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3260--3269},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw396},
doi = {10.1093/BIOINFORMATICS/BTW396},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuDYZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuDYZ16a,
author = {X. Hu and
Q. Dong and
J. Yang and
Y. Zhang},
title = {Recognizing metal and acid radical ion-binding sites by integrating
\emph{ab initio} modeling with template-based transferals},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3694},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw637},
doi = {10.1093/BIOINFORMATICS/BTW637},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuDYZ16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuSY16,
author = {Xihao Hu and
Christina Huan Shi and
Kevin Y. Yip},
title = {A novel method for discovering local spatial clusters of genomic regions
with functional relationships from {DNA} contact maps},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {111--120},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw256},
doi = {10.1093/BIOINFORMATICS/BTW256},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuSY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuZZML16,
author = {Xiaonan Hu and
Wei Zhang and
Sanguo Zhang and
Shuangge Ma and
Qizhai Li},
title = {Group-combined \emph{P}-values with applications to genetic association
studies},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2737--2743},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw314},
doi = {10.1093/BIOINFORMATICS/BTW314},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuZZML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuaCWLW16,
author = {Xu Hua and
Luxiao Chen and
Jin Wang and
Jie Li and
Edgar Wingender},
title = {Identifying cell-specific microRNA transcriptional start sites},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2403--2410},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw171},
doi = {10.1093/BIOINFORMATICS/BTW171},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuaCWLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangL16,
author = {Yao{-}Ting Huang and
Chen{-}Fu Liao},
title = {Integration of string and de Bruijn graphs for genome assembly},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1301--1307},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw011},
doi = {10.1093/BIOINFORMATICS/BTW011},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangS16,
author = {Yuanhua Huang and
Guido Sanguinetti},
title = {Statistical modeling of isoform splicing dynamics from RNA-seq time
series data},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2965--2972},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw364},
doi = {10.1093/BIOINFORMATICS/BTW364},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangWCBB16,
author = {Lin Huang and
Bo Wang and
Ruitang Chen and
Sivan Bercovici and
Serafim Batzoglou},
title = {Reveel: large-scale population genotyping using low-coverage sequencing
data},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1686--1696},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv530},
doi = {10.1093/BIOINFORMATICS/BTV530},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangWCBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangWWY16,
author = {Gongyi Huang and
Shaoli Wang and
Xueqin Wang and
Na You},
title = {An empirical Bayes method for genotyping and {SNP} detection using
multi-sample next-generation sequencing data},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3240--3245},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw409},
doi = {10.1093/BIOINFORMATICS/BTW409},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangWWY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HulovatyyCM16,
author = {Yuriy Hulovatyy and
Huili Chen and
Tijana Milenkovic},
title = {Exploring the structure and function of temporal networks with dynamic
graphlets},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2402},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw310},
doi = {10.1093/BIOINFORMATICS/BTW310},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HulovatyyCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuoHZZ16,
author = {Xiao Huo and
Sheng'en Hu and
Chengchen Zhao and
Yong Zhang},
title = {Dr.seq: a quality control and analysis pipeline for droplet sequencing},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2221--2223},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw174},
doi = {10.1093/BIOINFORMATICS/BTW174},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuoHZZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HurwitzSW16,
author = {Naama Hurwitz and
Dina Schneidman{-}Duhovny and
Haim J. Wolfson},
title = {Memdock: an {\(\alpha\)}-helical membrane protein docking algorithm},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2444--2450},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw184},
doi = {10.1093/BIOINFORMATICS/BTW184},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HurwitzSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HyrkasCRHAH16,
author = {Jeremy Hyrkas and
Sophie Clayton and
Francois Ribalet and
Daniel Halperin and
E. Virginia Armbrust and
Bill Howe},
title = {Scalable clustering algorithms for continuous environmental flow cytometry},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {417--423},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv594},
doi = {10.1093/BIOINFORMATICS/BTV594},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HyrkasCRHAH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IJzendoornGQK16,
author = {David G. P. van IJzendoorn and
Kimberly Glass and
John Quackenbush and
Marieke L. Kuijjer},
title = {PyPanda: a Python package for gene regulatory network reconstruction},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3363--3365},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw422},
doi = {10.1093/BIOINFORMATICS/BTW422},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IJzendoornGQK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IakovishinaJBRB16,
author = {Daria Iakovishina and
Isabelle Janoueix{-}Lerosey and
Emmanuel Barillot and
Mireille R{\'{e}}gnier and
Valentina Boeva},
title = {SV-Bay: structural variant detection in cancer genomes using a Bayesian
approach with correction for GC-content and read mappability},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {984--992},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv751},
doi = {10.1093/BIOINFORMATICS/BTV751},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IakovishinaJBRB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Illingworth16,
author = {Christopher J. R. Illingworth},
title = {{SAMFIRE:} multi-locus variant calling for time-resolved sequence
data},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2208--2209},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw205},
doi = {10.1093/BIOINFORMATICS/BTW205},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Illingworth16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IllouzMCGLO16,
author = {Tomer Illouz and
Ravit Madar and
Charlotte Clague and
Kathleen J. Griffioen and
Yoram Louzoun and
Eitan Okun},
title = {Unbiased classification of spatial strategies in the Barnes maze},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3314--3320},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw376},
doi = {10.1093/BIOINFORMATICS/BTW376},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IllouzMCGLO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IncarnatoNAO16,
author = {Danny Incarnato and
Francesco Neri and
Francesca Anselmi and
Salvatore Oliviero},
title = {{RNA} structure framework: automated transcriptome-wide reconstruction
of {RNA} secondary structures from high-throughput structure probing
data},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {459--461},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv571},
doi = {10.1093/BIOINFORMATICS/BTV571},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IncarnatoNAO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IntosalmiNAL16,
author = {Jukka Intosalmi and
Kari Nousiainen and
Helena Ahlfors and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {Data-driven mechanistic analysis method to reveal dynamically evolving
regulatory networks},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {288--296},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw274},
doi = {10.1093/BIOINFORMATICS/BTW274},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IntosalmiNAL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JacoxCSPS16,
author = {Edwin Jacox and
C{\'{e}}dric Chauve and
Gergely J. Sz{\"{o}}llosi and
Yann Ponty and
C{\'{e}}line Scornavacca},
title = {ecceTERA: comprehensive gene tree-species tree reconciliation using
parsimony},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2056--2058},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw105},
doi = {10.1093/BIOINFORMATICS/BTW105},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JacoxCSPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JaillardTMV16,
author = {Magali Jaillard and
Maud Tournoud and
Faustine Meynier and
Jean{-}Baptiste Veyrieras},
title = {Optimization of alignment-based methods for taxonomic binning of metagenomics
reads},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1779--1787},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw040},
doi = {10.1093/BIOINFORMATICS/BTW040},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JaillardTMV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JainAVAB16,
author = {Siddhartha Jain and
Joel Arrais and
Narasimhan J. Venkatachari and
Velpandi Ayyavoo and
Ziv Bar{-}Joseph},
title = {Reconstructing the temporal progression of {HIV-1} immune response
pathways},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {253--261},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw254},
doi = {10.1093/BIOINFORMATICS/BTW254},
timestamp = {Thu, 18 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JainAVAB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JainB16,
author = {Shobhit Jain and
Gary D. Bader},
title = {Predicting physiologically relevant {SH3} domain mediated protein-protein
interactions in yeast},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1865--1872},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw045},
doi = {10.1093/BIOINFORMATICS/BTW045},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JainB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JamrozKK16,
author = {Michal Jamr{\'{o}}z and
Andrzej Kolinski and
Daisuke Kihara},
title = {Ensemble-based evaluation for protein structure models},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {314--321},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw262},
doi = {10.1093/BIOINFORMATICS/BTW262},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JamrozKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JankowskiTP16,
author = {Aleksander Jankowski and
Jerzy Tiuryn and
Shyam Prabhakar},
title = {Romulus: robust multi-state identification of transcription factor
binding sites from DNase-seq data},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2419--2426},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw209},
doi = {10.1093/BIOINFORMATICS/BTW209},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JankowskiTP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaZLXC16,
author = {Jianhua Jia and
Liuxia Zhang and
Zi Liu and
Xuan Xiao and
Kuo{-}Chen Chou},
title = {pSumo-CD: predicting sumoylation sites in proteins with covariance
discriminant algorithm by incorporating sequence-coupled effects into
general PseAAC},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3133--3141},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw387},
doi = {10.1093/BIOINFORMATICS/BTW387},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiaZLXC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangTS16,
author = {Peng Jiang and
James A. Thomson and
Ron M. Stewart},
title = {Quality control of single-cell RNA-seq by SinQC},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2514--2516},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw176},
doi = {10.1093/BIOINFORMATICS/BTW176},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangTS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JoJMK16,
author = {Kyuri Jo and
Inuk Jung and
Ji Hwan Moon and
Sun Kim},
title = {Influence maximization in time bounded network identifies transcription
factors regulating perturbed pathways},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {128--136},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw275},
doi = {10.1093/BIOINFORMATICS/BTW275},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JoJMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JongNRE16,
author = {Victor L. Jong and
Putri W. Novianti and
Kit C. B. Roes and
Marinus J. C. Eijkemans},
title = {Selecting a classification function for class prediction with gene
expression data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1814--1822},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw034},
doi = {10.1093/BIOINFORMATICS/BTW034},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JongNRE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JostinsM16,
author = {Luke Jostins and
Gilean McVean},
title = {Trinculo: Bayesian and frequentist multinomial logistic regression
for genome-wide association studies of multi-category phenotypes},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1898--1900},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw075},
doi = {10.1093/BIOINFORMATICS/BTW075},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JostinsM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungreuthmayerN16,
author = {Christian Jungreuthmayer and
Stefan Neubauer and
Teresa Mairinger and
J{\"{u}}rgen Zanghellini and
Stephan Hann},
title = {\emph{ICT}: isotope correction toolbox},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {154--156},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv514},
doi = {10.1093/BIOINFORMATICS/BTV514},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungreuthmayerN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaewphanLOPGP16,
author = {Suwisa Kaewphan and
Sofie Van Landeghem and
Tomoko Ohta and
Yves Van de Peer and
Filip Ginter and
Sampo Pyysalo},
title = {Cell line name recognition in support of the identification of synthetic
lethality in cancer from text},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {276--282},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv570},
doi = {10.1093/BIOINFORMATICS/BTV570},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaewphanLOPGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KahlesBR16,
author = {Andr{\'{e}} Kahles and
Jonas Behr and
Gunnar R{\"{a}}tsch},
title = {{MMR:} a tool for read multi-mapper resolution},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {770--772},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv624},
doi = {10.1093/BIOINFORMATICS/BTV624},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KahlesBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KahlesOZR16,
author = {Andr{\'{e}} Kahles and
Cheng Soon Ong and
Yi Zhong and
Gunnar R{\"{a}}tsch},
title = {\emph{SplAdder}: identification, quantification and testing of alternative
splicing events from RNA-Seq data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1840--1847},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw076},
doi = {10.1093/BIOINFORMATICS/BTW076},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KahlesOZR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaiserEBL16,
author = {Florian Kaiser and
Alexander Eisold and
Sebastian Bittrich and
Dirk Labudde},
title = {Fit3D: a web application for highly accurate screening of spatial
residue patterns in protein structure data},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {792--794},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv637},
doi = {10.1093/BIOINFORMATICS/BTV637},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaiserEBL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KapouraniS16,
author = {Chantriolnt{-}Andreas Kapourani and
Guido Sanguinetti},
title = {Higher order methylation features for clustering and prediction in
epigenomic studies},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {405--412},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw432},
doi = {10.1093/BIOINFORMATICS/BTW432},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KapouraniS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaraVSWF16,
author = {Altan Kara and
Martin J. Vickers and
Martin T. Swain and
David E. Whitworth and
Narcis Fernandez{-}Fuentes},
title = {MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions
of prokaryotic two-component system proteins},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3339--3341},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw403},
doi = {10.1093/BIOINFORMATICS/BTW403},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaraVSWF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KasaharaMFN16,
author = {Kota Kasahara and
Neetha Mohan and
Ikuo Fukuda and
Haruki Nakamura},
title = {mDCC{\_}tools: characterizing multi-modal atomic motions in molecular
dynamics trajectories},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2531--2533},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw129},
doi = {10.1093/BIOINFORMATICS/BTW129},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KasaharaMFN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KatohS16,
author = {Kazutaka Katoh and
Daron M. Standley},
title = {A simple method to control over-alignment in the {MAFFT} multiple
sequence alignment program},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1933--1942},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw108},
doi = {10.1093/BIOINFORMATICS/BTW108},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KatohS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaushikNMSS16,
author = {Swati Kaushik and
Anu G. Nair and
Eshita Mutt and
Hari Prasanna Subramanian and
Ramanathan Sowdhamini},
title = {Rapid and enhanced remote homology detection by cascading hidden Markov
model searches in sequence space},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {338--344},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv538},
doi = {10.1093/BIOINFORMATICS/BTV538},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaushikNMSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KehrM16,
author = {Birte Kehr and
P{\'{a}}ll Melsted},
title = {chopBAI: {BAM} index reduction solves {I/O} bottlenecks in the joint
analysis of large sequencing cohorts},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2202--2204},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw149},
doi = {10.1093/BIOINFORMATICS/BTW149},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KehrM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KehrMH16,
author = {Birte Kehr and
P{\'{a}}ll Melsted and
Bjarni V. Halld{\'{o}}rsson},
title = {PopIns: population-scale detection of novel sequence insertions},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {961--967},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv273},
doi = {10.1093/BIOINFORMATICS/BTV273},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KehrMH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KernS16,
author = {Andrew D. Kern and
Daniel R. Schrider},
title = {Discoal: flexible coalescent simulations with selection},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3839--3841},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw556},
doi = {10.1093/BIOINFORMATICS/BTW556},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KernS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanK16,
author = {Ishita K. Khan and
Daisuke Kihara},
title = {Genome-scale prediction of moonlighting proteins using diverse protein
association information},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2281--2288},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw166},
doi = {10.1093/BIOINFORMATICS/BTW166},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhosravianiZB16,
author = {Mehrshad Khosraviani and
Morteza Saheb Zamani and
Gholamreza Bidkhori},
title = {FogLight: an efficient matrix-based approach to construct metabolic
pathways by search space reduction},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {398--408},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv578},
doi = {10.1093/BIOINFORMATICS/BTV578},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhosravianiZB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KikhneyPSS16,
author = {Alexey G. Kikhney and
Alejandro Panjkovich and
Anna V. Sokolova and
Dmitri I. Svergun},
title = {{DARA:} a web server for rapid search of structural neighbours using
solution small angle X-ray scattering data},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {616--618},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv611},
doi = {10.1093/BIOINFORMATICS/BTV611},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KikhneyPSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimAHK16,
author = {Baekdoo Kim and
Thahmina Ali and
Samuel Hosmer and
Konstantinos Krampis},
title = {Visual Omics Explorer {(VOE):} a cross-platform portal for interactive
data visualization},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2050--2052},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw119},
doi = {10.1093/BIOINFORMATICS/BTW119},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimAHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimH16,
author = {Hwee Kim and
Yo{-}Sub Han},
title = {{OMPPM:} online multiple palindrome pattern matching},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1151--1157},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv738},
doi = {10.1093/BIOINFORMATICS/BTV738},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimLT16,
author = {Sunghwan Kim and
Chien{-}Wei Lin and
George C. Tseng},
title = {MetaKTSP: a meta-analytic top scoring pair method for robust cross-study
validation of omics prediction analysis},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1966--1973},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw115},
doi = {10.1093/BIOINFORMATICS/BTW115},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimLT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimMLSLLK16,
author = {Junho Kim and
Ju Heon Maeng and
Jae Seok Lim and
Hyeonju Son and
Junehawk Lee and
Jeong Ho Lee and
Sangwoo Kim},
title = {Vecuum: identification and filtration of false somatic variants caused
by recombinant vector contamination},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3072--3080},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw383},
doi = {10.1093/BIOINFORMATICS/BTW383},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimMLSLLK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimS16,
author = {Sangjin Kim and
Paul Schliekelman},
title = {Prioritizing hypothesis tests for high throughput data},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {850--858},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv608},
doi = {10.1093/BIOINFORMATICS/BTV608},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimSY16,
author = {Sungchul Kim and
Lee Sael and
Hwanjo Yu},
title = {A mutation profile for top-\emph{k} patient search exploiting Gene-Ontology
and orthogonal non-negative matrix factorization},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2081},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw104},
doi = {10.1093/BIOINFORMATICS/BTW104},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimSY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimYW16,
author = {Sun Kim and
Lana Yeganova and
W. John Wilbur},
title = {\emph{Meshable}: searching PubMed abstracts by utilizing MeSH and
MeSH-derived topical terms},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3044--3046},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw331},
doi = {10.1093/BIOINFORMATICS/BTW331},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimYW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleinGBBCCFGHHK16,
author = {Kathleen Oros Klein and
Stepan Grinek and
Sasha Bernatsky and
Luigi Bouchard and
Antonio Ciampi and
Ines Colmegna and
Jean{-}Philippe Fortin and
Long Gao and
Marie{-}France Hivert and
Marie Hudson and
Michael S. Kobor and
Aur{\'{e}}lie Labbe and
Julia L. MacIsaac and
Michael J. Meaney and
Alexander M. Morin and
Kieran J. O'Donnell and
Tomi Pastinen and
Marinus H. Van Ijzendoorn and
Gregory Voisin and
Celia M. T. Greenwood},
title = {funtooNorm: an {R} package for normalization of {DNA} methylation
data when there are multiple cell or tissue types},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {593--595},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv615},
doi = {10.1093/BIOINFORMATICS/BTV615},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KleinGBBCCFGHHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlinkenD16,
author = {Jan Bert Van Klinken and
Ko Willems van Dijk},
title = {FluxModeCalculator: an efficient tool for large-scale flux mode computation},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1265--1266},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv742},
doi = {10.1093/BIOINFORMATICS/BTV742},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlinkenD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KnappDDM16,
author = {Bernhard Knapp and
Samuel Demharter and
Charlotte M. Deane and
Peter Minary},
title = {Exploring peptide/MHC detachment processes using hierarchical natural
move Monte Carlo},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {181--186},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv502},
doi = {10.1093/BIOINFORMATICS/BTV502},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KnappDDM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KnudsenSTHBP16,
author = {Michael Knudsen and
Dan S{\o}ndergaard and
Claus Tofting{-}Olesen and
Frederik T. Hansen and
Ditlev Egeskov Brodersen and
Christian N. S. Pedersen},
title = {Computational discovery of specificity-conferring sites in non-ribosomal
peptide synthetases},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {325--329},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv600},
doi = {10.1093/BIOINFORMATICS/BTV600},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KnudsenSTHBP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoldeMLLV16,
author = {Raivo Kolde and
Kaspar M{\"{a}}rtens and
Kaie Lokk and
Sven Laur and
Jaak Vilo},
title = {seqlm: an {MDL} based method for identifying differentially methylated
regions in high density methylation array data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2604--2610},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw304},
doi = {10.1093/BIOINFORMATICS/BTW304},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoldeMLLV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KomiyamaBUSS16,
author = {Yusuke Komiyama and
Masaki Banno and
Kokoro Ueki and
Gul Saad and
Kentaro Shimizu},
title = {Automatic generation of bioinformatics tools for predicting protein-ligand
binding sites},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {901--907},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv593},
doi = {10.1093/BIOINFORMATICS/BTV593},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KomiyamaBUSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonigRGS16,
author = {Stefanie K{\"{o}}nig and
Lars Romoth and
Lizzy Gerischer and
Mario Stanke},
title = {Simultaneous gene finding in multiple genomes},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3388--3395},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw494},
doi = {10.1093/BIOINFORMATICS/BTW494},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonigRGS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonopkaN16,
author = {Tomasz Konopka and
Sebastian M. B. Nijman},
title = {Comparison of genetic variants in matched samples using thesaurus
annotation},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {657--663},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv654},
doi = {10.1093/BIOINFORMATICS/BTV654},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonopkaN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Koster16,
author = {Johannes K{\"{o}}ster},
title = {Rust-Bio: a fast and safe bioinformatics library},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {444--446},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv573},
doi = {10.1093/BIOINFORMATICS/BTV573},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Koster16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KouXL16,
author = {Qiang Kou and
Likun Xun and
Xiaowen Liu},
title = {TopPIC: a software tool for top-down mass spectrometry-based proteoform
identification and characterization},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3495--3497},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw398},
doi = {10.1093/BIOINFORMATICS/BTW398},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KouXL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoutroumpasBVC16,
author = {Konstantinos Koutroumpas and
Paolo Ballarini and
Irene Votsi and
Paul{-}Henry Courn{\`{e}}de},
title = {Bayesian parameter estimation for the Wnt pathway: an infinite mixture
models approach},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {781--789},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw471},
doi = {10.1093/BIOINFORMATICS/BTW471},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoutroumpasBVC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrausBF16,
author = {Oren Z. Kraus and
Lei Jimmy Ba and
Brendan J. Frey},
title = {Classifying and segmenting microscopy images with deep multiple instance
learning},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {52--59},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw252},
doi = {10.1093/BIOINFORMATICS/BTW252},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrausBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrejciHLVM16,
author = {Adam Krejci and
Ted R. Hupp and
Matej Lexa and
Borivoj Vojtesek and
Petr M{\"{u}}ller},
title = {Hammock: a hidden Markov model-based peptide clustering algorithm
to identify protein-interaction consensus motifs in large datasets},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {9--16},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv522},
doi = {10.1093/BIOINFORMATICS/BTV522},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrejciHLVM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrizekLOFH16,
author = {Pavel Kr{\'{\i}}zek and
Tom{\'{a}}s Lukes and
Martin Ovesn{\'{y}} and
Karel Fliegel and
Guy M. Hagen},
title = {SIMToolbox: a {MATLAB} toolbox for structured illumination fluorescence
microscopy},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {318--320},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv576},
doi = {10.1093/BIOINFORMATICS/BTV576},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrizekLOFH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrollELBBB16,
author = {Karl W. Kroll and
Ann{-}Katherin Eisfeld and
Gerard Lozanski and
Clara D. Bloomfield and
John C. Byrd and
James S. Blachly},
title = {MuCor: mutation aggregation and correlation},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1557--1558},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw028},
doi = {10.1093/BIOINFORMATICS/BTW028},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrollELBBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KroonLLHTSKY16,
author = {M. Kroon and
Eric{-}Wubbo Lameijer and
N. Lakenberg and
Jayne Y. Hehir{-}Kwa and
D. T. Thung and
P. Eline Slagboom and
Joost N. Kok and
Kai Ye},
title = {Detecting dispersed duplications in high-throughput sequencing data
using a database-free approach},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {505--510},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv621},
doi = {10.1093/BIOINFORMATICS/BTV621},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KroonLLHTSKY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrupaMWYHSGLKSS16,
author = {Pawel Krupa and
Magdalena A. Mozolewska and
Marta Wisniewska and
Yanping Yin and
Yi He and
Adam K. Sieradzan and
Robert Ganzynkowicz and
Agnieszka G. Lipska and
Agnieszka S. Karczynska and
Magdalena Slusarz and
Rafal Slusarz and
Artur Gieldon and
Cezary Czaplewski and
Dawid Jagiela and
Bartlomiej Zaborowski and
Harold A. Scheraga and
Adam Liwo},
title = {Performance of protein-structure predictions with the physics-based
{UNRES} force field in {CASP11}},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3270--3278},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw404},
doi = {10.1093/BIOINFORMATICS/BTW404},
timestamp = {Mon, 04 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrupaMWYHSGLKSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KruseHHV16,
author = {Kai Kruse and
Clemens B. Hug and
Benjam{\'{\i}}n Hern{\'{a}}ndez{-}Rodr{\'{\i}}guez and
Juan M. Vaquerizas},
title = {TADtool: visual parameter identification for TAD-calling algorithms},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3190--3192},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw368},
doi = {10.1093/BIOINFORMATICS/BTW368},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KruseHHV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KucharikHSQ16,
author = {Marcel Kuchar{\'{\i}}k and
Ivo L. Hofacker and
Peter F. Stadler and
Jing Qin},
title = {Pseudoknots in {RNA} folding landscapes},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {187--194},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv572},
doi = {10.1093/BIOINFORMATICS/BTV572},
timestamp = {Thu, 21 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KucharikHSQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuleshovSB16,
author = {Volodymyr Kuleshov and
Michael P. Snyder and
Serafim Batzoglou},
title = {Genome assembly from synthetic long read clouds},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {216--224},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw267},
doi = {10.1093/BIOINFORMATICS/BTW267},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuleshovSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KultimaCFHLDVZS16,
author = {Jens Roat Kultima and
Lu{\'{\i}}s Pedro Coelho and
Kristoffer Forslund and
Jaime Huerta{-}Cepas and
Simone S. Li and
Marja Driessen and
Anita Yvonne Voigt and
Georg Zeller and
Shinichi Sunagawa and
Peer Bork},
title = {{MOCAT2:} a metagenomic assembly, annotation and profiling framework},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2520--2523},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw183},
doi = {10.1093/BIOINFORMATICS/BTW183},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KultimaCFHLDVZS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KurodaG16,
author = {Daisuke Kuroda and
Jeffrey J. Gray},
title = {Shape complementarity and hydrogen bond preferences in protein-protein
interfaces: implications for antibody modeling and protein-protein
docking},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2451--2456},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw197},
doi = {10.1093/BIOINFORMATICS/BTW197},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KurodaG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KushwahaCHA16,
author = {Sandeep K. Kushwaha and
Pallavi Chauhan and
Katarina Hedlund and
Dag G. Ahr{\'{e}}n},
title = {NBSPred: a support vector machine-based high-throughput pipeline for
plant resistance protein {NBSLRR} prediction},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1223--1225},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv714},
doi = {10.1093/BIOINFORMATICS/BTV714},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KushwahaCHA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KwakP16,
author = {Il{-}Youp Kwak and
Wei Pan},
title = {Adaptive gene- and pathway-trait association testing with {GWAS} summary
statistics},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1178--1184},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv719},
doi = {10.1093/BIOINFORMATICS/BTV719},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KwakP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LabuzzettaAWWLT16,
author = {Charles J. Labuzzetta and
Margaret L. Antonio and
Patricia M. Watson and
Robert C. Wilson and
Lauren A. Laboissonniere and
Jeffrey M. Trimarchi and
Baris Genc and
P. Hande Ozdinler and
Dennis K. Watson and
Paul E. Anderson},
title = {Complementary feature selection from alternative splicing events and
gene expression for phenotype prediction},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {421--429},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw430},
doi = {10.1093/BIOINFORMATICS/BTW430},
timestamp = {Fri, 04 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LabuzzettaAWWLT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LachmannGAC16,
author = {Alexander Lachmann and
Federico M. Giorgi and
Mariano J. Alvarez and
Andrea Califano},
title = {Detection and removal of spatial bias in multiwell assays},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1959--1965},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw092},
doi = {10.1093/BIOINFORMATICS/BTW092},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LachmannGAC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LachmannGLC16,
author = {Alexander Lachmann and
Federico M. Giorgi and
Gonzalo L{\'{o}}pez and
Andrea Califano},
title = {ARACNe-AP: gene network reverse engineering through adaptive partitioning
inference of mutual information},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2233--2235},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw216},
doi = {10.1093/BIOINFORMATICS/BTW216},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LachmannGLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LacourESFB16,
author = {Andr{\'{e}} Lacour and
David Ellinghaus and
Stefan Schreiber and
Andre Franke and
Tim Becker},
title = {Haplotype synthesis analysis reveals functional variants underlying
known genome-wide associated susceptibility loci},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2136--2142},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw125},
doi = {10.1093/BIOINFORMATICS/BTW125},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LacourESFB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LacroixTRNGLG16,
author = {Thomas Lacroix and
Sylvie Th{\'{e}}rond and
Marc Rugeri and
Pierre Nicolas and
Annie Gendrault and
Valentin Loux and
Jean{-}Fran{\c{c}}ois Gibrat},
title = {Synchronized navigation and comparative analyses across Ensembl complete
bacterial genomes with {INSYGHT}},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1083--1084},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv689},
doi = {10.1093/BIOINFORMATICS/BTV689},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LacroixTRNGLG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaimerHLL16,
author = {Josef Laimer and
Julia Hiebl{-}Flach and
Daniel Lengauer and
Peter Lackner},
title = {MAESTROweb: a web server for structure-based protein stability prediction},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1414--1416},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv769},
doi = {10.1093/BIOINFORMATICS/BTV769},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaimerHLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LambertAHN16,
author = {Samuel A. Lambert and
Mihai Albu and
Timothy R. Hughes and
Hamed Shateri Najafabadi},
title = {Motif comparison based on similarity of binding affinity profiles},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3504--3506},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw489},
doi = {10.1093/BIOINFORMATICS/BTW489},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LambertAHN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LamineDN16,
author = {James G. Lamine and
Randall J. DeJong and
Serita M. Nelesen},
title = {PhamDB: a web-based application for building Phamerator databases},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2026--2028},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw106},
doi = {10.1093/BIOINFORMATICS/BTW106},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LamineDN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LanZKY16,
author = {Zhou Lan and
Yize Zhao and
Jian Kang and
Tianwei Yu},
title = {Bayesian network feature finder {(BANFF):} an {R} package for gene
network feature selection},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3685--3687},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw522},
doi = {10.1093/BIOINFORMATICS/BTW522},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LanZKY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangeWV16,
author = {Joanna Lange and
Lucjan Stanislaw Wyrwicz and
Gert Vriend},
title = {{KMAD:} knowledge-based multiple sequence alignment for intrinsically
disordered proteins},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {932--936},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv663},
doi = {10.1093/BIOINFORMATICS/BTV663},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LangeWV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LauMMFADL16,
author = {Bayo Lau and
Marghoob Mohiyuddin and
John C. Mu and
Li Tai Fang and
Narges Bani Asadi and
Carolina Dallett and
Hugo Y. K. Lam},
title = {LongISLND: \emph{in silico} sequencing of lengthy and noisy datatypes},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3829--3832},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw602},
doi = {10.1093/BIOINFORMATICS/BTW602},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LauMMFADL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeamanL16,
author = {Robert Leaman and
Zhiyong Lu},
title = {TaggerOne: joint named entity recognition and normalization with semi-Markov
Models},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2839--2846},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw343},
doi = {10.1093/BIOINFORMATICS/BTW343},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeamanL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lee16,
author = {Dongwon Lee},
title = {{LS-GKM:} a new gkm-SVM for large-scale datasets},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2196--2198},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw142},
doi = {10.1093/BIOINFORMATICS/BTW142},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lee16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeCKKCHP16,
author = {Sungyoung Lee and
Sungkyoung Choi and
Young Jin Kim and
Bong{-}Jo Kim and
Heungsun Hwang and
Taesung Park},
title = {Pathway-based approach using hierarchical components of collapsed
rare variants},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {586--594},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw425},
doi = {10.1093/BIOINFORMATICS/BTW425},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeCKKCHP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeIZSIZ16,
author = {Eunjee Lee and
Koichi Ito and
Yong Zhao and
Eric E. Schadt and
Hanna Y. Irie and
Jun Zhu},
title = {Inferred miRNA activity identifies miRNA-mediated regulatory networks
underlying multiple cancers},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {96--105},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv531},
doi = {10.1093/BIOINFORMATICS/BTV531},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeIZSIZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeKLCKLP16,
author = {Jaehoon Lee and
Young Jin Kim and
Juyoung Lee and
Bong{-}Jo Kim and
Seungyeoun Lee and
Taesung Park},
title = {Gene-set association tests for next-generation sequencing data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {611--619},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw429},
doi = {10.1093/BIOINFORMATICS/BTW429},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeKLCKLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeKX16,
author = {Seunghak Lee and
Soonho Kong and
Eric P. Xing},
title = {A network-driven approach for genome-wide association mapping},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {164--173},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw270},
doi = {10.1093/BIOINFORMATICS/BTW270},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeKX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeLIRFOT16,
author = {Hyungro Lee and
Min Su Lee and
Wazim Mohammed Ismail and
Mina Rho and
Geoffrey C. Fox and
Sangyoon Oh and
Haixu Tang},
title = {MGEScan: a Galaxy-based system for identifying retrotransposons in
genomes},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2502--2504},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw157},
doi = {10.1093/BIOINFORMATICS/BTW157},
timestamp = {Mon, 06 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeLIRFOT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeLZY16,
author = {Hao{-}Chih Lee and
Tao Liao and
Yongjie Jessica Zhang and
Ge Yang},
title = {Shape component analysis: structure-preserving dimension reduction
on biological shape spaces},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {755--763},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv648},
doi = {10.1093/BIOINFORMATICS/BTV648},
timestamp = {Fri, 07 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeLZY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeM16,
author = {Wonyul Lee and
Jeffrey S. Morris},
title = {Identification of differentially methylated loci using wavelet-based
functional mixed models},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {664--672},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv659},
doi = {10.1093/BIOINFORMATICS/BTV659},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeePS16,
author = {Chee Lee and
Snehal Patil and
Maureen A. Sartor},
title = {RNA-Enrich: a cut-off free functional enrichment testing method for
RNA-seq with improved detection power},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1100--1102},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv694},
doi = {10.1093/BIOINFORMATICS/BTV694},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeePS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeSKLCKJTK16,
author = {Kyubum Lee and
Won{-}Ho Shin and
Byounggun Kim and
Sunwon Lee and
Yonghwa Choi and
Sunkyu Kim and
Minji Jeon and
Aik Choon Tan and
Jaewoo Kang},
title = {HiPub: translating PubMed and {PMC} texts to networks for knowledge
discovery},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2886--2888},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw511},
doi = {10.1093/BIOINFORMATICS/BTW511},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeSKLCKJTK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeW16,
author = {Seung Hwan Lee and
Julius H. J. Van der Werf},
title = {{MTG2:} an efficient algorithm for multivariate linear mixed model
analysis based on genomic information},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1420--1422},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw012},
doi = {10.1093/BIOINFORMATICS/BTW012},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeWBRWFKVB16,
author = {Donghyung Lee and
Vernell S. Williamson and
T. Bernard Bigdeli and
Brien P. Riley and
Bradley Todd Webb and
Ayman H. Fanous and
Kenneth S. Kendler and
Vladimir I. Vladimirov and
Silviu{-}Alin Bacanu},
title = {{JEPEGMIX:} gene-level joint analysis of functional SNPs in cosmopolitan
cohorts},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {295--297},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv567},
doi = {10.1093/BIOINFORMATICS/BTV567},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeWBRWFKVB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeWBW16,
author = {En{-}Shiun Annie Lee and
Fiona J. Whelan and
Dawn M. E. Bowdish and
Andrew K. C. Wong},
title = {Partitioning and correlating subgroup characteristics from Aligned
Pattern Clusters},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2427--2434},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw211},
doi = {10.1093/BIOINFORMATICS/BTW211},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeWBW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeggettHCCD16,
author = {Richard M. Leggett and
Darren Heavens and
Mario C{\'{a}}ccamo and
Matthew D. Clark and
Robert P. Davey},
title = {NanoOK: multi-reference alignment analysis of nanopore sequencing
data, quality and error profiles},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {142--144},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv540},
doi = {10.1093/BIOINFORMATICS/BTV540},
timestamp = {Sun, 04 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeggettHCCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeglandAA16,
author = {David Legland and
Ignacio Arganda{-}Carreras and
Philippe Andrey},
title = {MorphoLibJ: integrated library and plugins for mathematical morphology
with ImageJ},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3532--3534},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw413},
doi = {10.1093/BIOINFORMATICS/BTW413},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeglandAA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeiS16,
author = {Jikai Lei and
Yanni Sun},
title = {Assemble CRISPRs from metagenomic sequencing data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {520--528},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw456},
doi = {10.1093/BIOINFORMATICS/BTW456},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeiS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeisersonRR16,
author = {Mark D. M. Leiserson and
Matthew A. Reyna and
Benjamin J. Raphael},
title = {A weighted exact test for mutually exclusive mutations in cancer},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {736--745},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw462},
doi = {10.1093/BIOINFORMATICS/BTW462},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeisersonRR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LengCCTKS16,
author = {Ning Leng and
Jeea Choi and
Li{-}Fang Chu and
James A. Thomson and
Christina Kendziorski and
Ron M. Stewart},
title = {OEFinder: a user interface to identify and visualize ordering effects
in single-cell RNA-seq data},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1408--1410},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw004},
doi = {10.1093/BIOINFORMATICS/BTW004},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LengCCTKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LenzRVBMAKE16,
author = {Michael Lenz and
Nadia J. T. Roumans and
Roel G. Vink and
Marleen A. van Baak and
Edwin C. M. Mariman and
Ilja C. W. Arts and
Theo M. de Kok and
G{\"{o}}khan Ertaylan},
title = {Estimating real cell size distribution from cross-section microscopy
imaging},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {396--404},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw431},
doi = {10.1093/BIOINFORMATICS/BTW431},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LenzRVBMAKE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LewinSPMLSPBR16,
author = {Alex Lewin and
Habib Saadi and
James E. Peters and
Aida Moreno{-}Moral and
James C. Lee and
Kenneth G. C. Smith and
Enrico Petretto and
Leonardo Bottolo and
Sylvia Richardson},
title = {{MT-HESS:} an efficient Bayesian approach for simultaneous association
detection in {OMICS} datasets, with application to eQTL mapping in
multiple tissues},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {523--532},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv568},
doi = {10.1093/BIOINFORMATICS/BTV568},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LewinSPMLSPBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li16,
author = {Heng Li},
title = {{BGT:} efficient and flexible genotype query across many samples},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {590--592},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv613},
doi = {10.1093/BIOINFORMATICS/BTV613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li16a,
author = {Heng Li},
title = {Minimap and miniasm: fast mapping and de novo assembly for noisy long
sequences},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2103--2110},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw152},
doi = {10.1093/BIOINFORMATICS/BTW152},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiAWDW16,
author = {Nan Li and
Richard I. Ainsworth and
Meixin Wu and
Bo Ding and
Wei Wang},
title = {{MIEC-SVM:} automated pipeline for protein peptide/ligand interaction
prediction},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {940--942},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv666},
doi = {10.1093/BIOINFORMATICS/BTV666},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiAWDW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiDVJT16,
author = {Qiwei Li and
David B. Dahl and
Marina Vannucci and
Hyun Joo and
Jerry W. Tsai},
title = {KScons: a Bayesian approach for protein residue contact prediction
using the knob-socket model of protein tertiary structure},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3774--3781},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw553},
doi = {10.1093/BIOINFORMATICS/BTW553},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiDVJT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHZLXDZ16,
author = {Zhanchao Li and
Meng{-}Hua Huang and
Wen{-}Qian Zhong and
Zhi{-}Qing Liu and
Yun Xie and
Zong Dai and
Xiaoyong Zou},
title = {Identification of drug-target interaction from interactome network
with 'guilt-by-association' principle and topology features},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1057--1064},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv695},
doi = {10.1093/BIOINFORMATICS/BTV695},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHZLXDZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiPLWWZXXSKLLW16,
author = {Mulin Jun Li and
Zhicheng Pan and
Zipeng Liu and
Jiexing Wu and
Panwen Wang and
Yun Zhu and
Feng Xu and
Zhengyuan Xia and
Pak Chung Sham and
Jean{-}Pierre A. Kocher and
Miao{-}Xin Li and
Jun S. Liu and
Junwen Wang},
title = {Predicting regulatory variants with composite statistic},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2729--2736},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw288},
doi = {10.1093/BIOINFORMATICS/BTW288},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiPLWWZXXSKLLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiSHZQ16,
author = {Ben Li and
Zhaonan Sun and
Qing He and
Yu Zhu and
Zhaohui S. Qin},
title = {Bayesian inference with historical data-based informative priors improves
detection of differentially expressed genes},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {682--689},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv631},
doi = {10.1093/BIOINFORMATICS/BTV631},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiSHZQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiSSLLCWZ16,
author = {Shuai Li and
Qiancheng Shen and
Minyi Su and
Xinyi Liu and
Shaoyong Lu and
Zhongjie Chen and
Renxiao Wang and
Jian Zhang},
title = {Alloscore: a method for predicting allosteric ligand-protein interactions},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1574--1576},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw036},
doi = {10.1093/BIOINFORMATICS/BTW036},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiSSLLCWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LimLCN16,
author = {Kun Ming Kenneth Lim and
Chenhao Li and
Kern Rei Chng and
Niranjan Nagarajan},
title = {@MInter: automated text-mining of microbial interactions},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2981--2987},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw357},
doi = {10.1093/BIOINFORMATICS/BTW357},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LimLCN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LimouTW16,
author = {Sophie Limou and
Andrew M. Taverner and
Cheryl A. Winkler},
title = {Ferret: a user-friendly Java tool to extract data from the 1000 Genomes
Project},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2224--2226},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw147},
doi = {10.1093/BIOINFORMATICS/BTW147},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LimouTW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinX16,
author = {Weizhong Lin and
Dong Xu},
title = {Imbalanced multi-label learning for identifying antimicrobial peptides
and their functional types},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3745--3752},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw560},
doi = {10.1093/BIOINFORMATICS/BTW560},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindenCBFE16,
author = {Martin Lind{\'{e}}n and
Vladimir Curic and
Alexis Boucharin and
David Fange and
Johan Elf},
title = {Simulated single molecule microscopy with SMeagol},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2394--2395},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw109},
doi = {10.1093/BIOINFORMATICS/BTW109},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindenCBFE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiquetMHT16,
author = {Beno{\^{\i}}t Liquet and
Pierre Lafaye de Micheaux and
Boris P. Hejblum and
Rodolphe Thi{\'{e}}baut},
title = {Group and sparse group partial least square approaches applied in
genomics context},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {35--42},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv535},
doi = {10.1093/BIOINFORMATICS/BTV535},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiquetMHT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuDYZZXDGX16,
author = {Zhihong Liu and
Peng Ding and
Xin Yan and
Minghao Zheng and
Huihao Zhou and
Yuehua Xu and
Yunfei Du and
Qiong Gu and
Jun Xu},
title = {{ASDB:} a resource for probing protein functions with small molecules},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1752--1754},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw055},
doi = {10.1093/BIOINFORMATICS/BTW055},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuDYZZXDGX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuGBW16,
author = {Bo Liu and
Hongzhe Guo and
Michael Brudno and
Yadong Wang},
title = {deBGA: read alignment with de Bruijn graph-based seed and extension},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3224--3232},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw371},
doi = {10.1093/BIOINFORMATICS/BTW371},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuGBW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuGTW16,
author = {Bo Liu and
Dengfeng Guan and
Mingxiang Teng and
Yadong Wang},
title = {rHAT: fast alignment of noisy long reads with regional hashing},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1625--1631},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv662},
doi = {10.1093/BIOINFORMATICS/BTV662},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuGTW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuGWLFDL16,
author = {Zhi Liu and
Tuantuan Gui and
Zhen Wang and
Hong Li and
Yunhe Fu and
Xiao Dong and
Yixue Li},
title = {cisASE: a likelihood-based method for detecting putative \emph{cis}-regulated
allele-specific expression in {RNA} sequencing data},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3291--3297},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw416},
doi = {10.1093/BIOINFORMATICS/BTW416},
timestamp = {Tue, 28 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuGWLFDL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuH16,
author = {Hui Liu and
Tingjun Hou},
title = {CaFE: a tool for binding affinity prediction using end-point free
energy methods},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2216--2218},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw215},
doi = {10.1093/BIOINFORMATICS/BTW215},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLC16,
author = {Bin Liu and
Ren Long and
Kuo{-}Chen Chou},
title = {iDHS-EL: identifying DNase {I} hypersensitive sites by fusing three
different modes of pseudo nucleotide composition into an ensemble
learning framework},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2411--2418},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw186},
doi = {10.1093/BIOINFORMATICS/BTW186},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLLPJZLW16,
author = {Yongzhuang Liu and
Jian Liu and
Jianguo Lu and
Jiajie Peng and
Liran Juan and
Xiaolin Zhu and
Bingshan Li and
Yadong Wang},
title = {Joint detection of copy number variations in parent-offspring trios},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1130--1137},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv707},
doi = {10.1093/BIOINFORMATICS/BTV707},
timestamp = {Tue, 19 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLLPJZLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuRLZBS16,
author = {Feng Liu and
Chao Ren and
Hao Li and
Pingkun Zhou and
Xiaochen Bo and
Wenjie Shu},
title = {\emph{De novo} identification of replication-timing domains in the
human genome by deep learning},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {641--649},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv643},
doi = {10.1093/BIOINFORMATICS/BTV643},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuRLZBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuS16,
author = {Tzu{-}Yu Liu and
Yun S. Song},
title = {Prediction of ribosome footprint profile shapes from transcript sequences},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {183--191},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw253},
doi = {10.1093/BIOINFORMATICS/BTW253},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWMY16,
author = {Jin Liu and
Xiang Wan and
Shuangge Ma and
Can Yang},
title = {{EPS:} an empirical Bayes approach to integrating pleiotropy and tissue-specific
information for prioritizing risk genes},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1856--1864},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw081},
doi = {10.1093/BIOINFORMATICS/BTW081},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWMY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWWZL16,
author = {Fangfang Liu and
Chong Wang and
Zuowei Wu and
Qijing Zhang and
Peng Liu},
title = {A zero-inflated Poisson model for insertion tolerance analysis of
genes based on Tn-seq data},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1701--1708},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw061},
doi = {10.1093/BIOINFORMATICS/BTW061},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWWZL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZ16,
author = {Yining Liu and
Min Zhao},
title = {lnCaNet: pan-cancer co-expression network for human lncRNA and cancer
genes},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1595--1597},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw017},
doi = {10.1093/BIOINFORMATICS/BTW017},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZ16a,
author = {Yiyi Liu and
Hongyu Zhao},
title = {Predicting synergistic effects between compounds through their structural
similarity and effects on transcriptomes},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3782--3789},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw509},
doi = {10.1093/BIOINFORMATICS/BTW509},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZ16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZW16,
author = {Bo Liu and
Dixian Zhu and
Yadong Wang},
title = {deBWT: parallel construction of Burrows-Wheeler Transform for large
collection of genomes with de Bruijn-branch encoding},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {174--182},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw266},
doi = {10.1093/BIOINFORMATICS/BTW266},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiviKPT16,
author = {Carmen Maria Livi and
Petr Klus and
Riccardo Delli Ponti and
Gian Gaetano Tartaglia},
title = {\emph{cat}RAPID \emph{signature}: identification of ribonucleoproteins
and RNA-binding regions},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {773--775},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv629},
doi = {10.1093/BIOINFORMATICS/BTV629},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiviKPT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoboML16,
author = {Daniel Lobo and
Junji Morokuma and
Michael Levin},
title = {Computational discovery and \emph{in vivo} validation of \emph{hnf4}
as a regulatory gene in planarian regeneration},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2681--2685},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw299},
doi = {10.1093/BIOINFORMATICS/BTW299},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoboML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LombardiMC16,
author = {Leandro E. Lombardi and
Marcelo A. Marti and
Luciana Capece},
title = {{CG2AA:} backmapping protein coarse-grained structures},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1235--1237},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv740},
doi = {10.1093/BIOINFORMATICS/BTV740},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LombardiMC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lopez-CamposMG16,
author = {Guillermo L{\'{o}}pez{-}Campos and
Fernando Jos{\'{e}} Mart{\'{\i}}n{-}S{\'{a}}nchez and
Kathleen Gray},
title = {Comment on 'Discovering hospital admission patterns using models learnt
from electronic hospital records'. The importance of using the right
codes},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2079--2080},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw078},
doi = {10.1093/BIOINFORMATICS/BTW078},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lopez-CamposMG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LorenzLHSW16,
author = {Ronny Lorenz and
Dominik Luntzer and
Ivo L. Hofacker and
Peter F. Stadler and
Michael T. Wolfinger},
title = {{SHAPE} directed {RNA} folding},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {145--147},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv523},
doi = {10.1093/BIOINFORMATICS/BTV523},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LorenzLHSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LovePGMPL16,
author = {Tanzy M. T. Love and
Sung Yong Park and
Elena E. Giorgi and
Wendy J. Mack and
Alan S. Perelson and
Ha Youn Lee},
title = {{SPMM:} estimating infection duration of multivariant {HIV-1} infections},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1308--1315},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv749},
doi = {10.1093/BIOINFORMATICS/BTV749},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LovePGMPL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuBF16,
author = {Hui{-}Chun Lu and
Juli{\'{a}}n Herrera Braga and
Franca Fraternali},
title = {PinSnps: structural and functional analysis of SNPs in the context
of protein interaction networks},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2534--2536},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw153},
doi = {10.1093/BIOINFORMATICS/BTW153},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuC16,
author = {Jing Lu and
Heather A. Carlson},
title = {ChemTreeMap: an interactive map of biochemical similarity in molecular
datasets},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3584--3592},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw523},
doi = {10.1093/BIOINFORMATICS/BTW523},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuS16,
author = {Mengyin Lu and
Matthew Stephens},
title = {Variance adaptive shrinkage (\emph{vash}): flexible empirical Bayes
estimation of variances},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3428--3434},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw483},
doi = {10.1093/BIOINFORMATICS/BTW483},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuYHZ16,
author = {Qiongshi Lu and
Xinwei Yao and
Yiming Hu and
Hongyu Zhao},
title = {GenoWAP: {GWAS} signal prioritization through integrated analysis
of genomic functional annotation},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {542--548},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv610},
doi = {10.1093/BIOINFORMATICS/BTV610},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuYHZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LubitzHBNKL16,
author = {Timo Lubitz and
Jens Hahn and
Frank T. Bergmann and
Elad Noor and
Edda Klipp and
Wolfram Liebermeister},
title = {SBtab: a flexible table format for data exchange in systems biology},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2559--2561},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw179},
doi = {10.1093/BIOINFORMATICS/BTW179},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LubitzHBNKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LucasSVFVS16,
author = {F. Anthony San Lucas and
Smruthy Sivakumar and
Selina Vattathil and
Jerry Fowler and
Eduardo Vilar and
Paul Scheet},
title = {Rapid and powerful detection of subtle allelic imbalance from exome
sequencing data with \emph{hapLOHseq}},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3015--3017},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw340},
doi = {10.1093/BIOINFORMATICS/BTW340},
timestamp = {Sun, 25 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LucasSVFVS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LukasikWZ16,
author = {Anna Lukasik and
Maciej W{\'{o}}jcikowski and
Piotr Zielenkiewicz},
title = {Tools4miRs - one place to gather all the tools for miRNA analysis},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2722--2724},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw189},
doi = {10.1093/BIOINFORMATICS/BTW189},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LukasikWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LunaBADS16,
author = {Augustin Luna and
{\"{O}}zg{\"{u}}n Babur and
B{\"{u}}lent Arman Aksoy and
Emek Demir and
Chris Sander},
title = {PaxtoolsR: pathway analysis in {R} using Pathway Commons},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1262--1264},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv733},
doi = {10.1093/BIOINFORMATICS/BTV733},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LunaBADS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LunaRSGSVRSP16,
author = {Augustin Luna and
Vinodh N. Rajapakse and
Fabricio G. Sousa and
Jianjiong Gao and
Nikolaus Schultz and
Sudhir Varma and
William C. Reinhold and
Chris Sander and
Yves Pommier},
title = {rcellminer: exploring molecular profiles and drug response of the
{NCI-60} cell lines in {R}},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1272--1274},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv701},
doi = {10.1093/BIOINFORMATICS/BTV701},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LunaRSGSVRSP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoWLLPWP16,
author = {Huimin Luo and
Jianxin Wang and
Min Li and
Junwei Luo and
Xiaoqing Peng and
Fang{-}Xiang Wu and
Yi Pan},
title = {Drug repositioning based on comprehensive similarity measures and
Bi-Random walk algorithm},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2664--2671},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw228},
doi = {10.1093/BIOINFORMATICS/BTW228},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoWLLPWP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaKQHLCCWMLXL16,
author = {Jian Ma and
Johannes K{\"{o}}ster and
Qian Qin and
Shengen Hu and
Wei Li and
Chenhao Chen and
Qingyi Cao and
Jinzeng Wang and
Shenglin Mei and
Qi Liu and
Han Xu and
Xiaole Shirley Liu},
title = {{CRISPR-DO} for genome-wide {CRISPR} design and optimization},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3336--3338},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw476},
doi = {10.1093/BIOINFORMATICS/BTW476},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaKQHLCCWMLXL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaSM16,
author = {Jing Ma and
Ali Shojaie and
George Michailidis},
title = {Network-based pathway enrichment analysis with incomplete network
information},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3165--3174},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw410},
doi = {10.1093/BIOINFORMATICS/BTW410},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaceTBLJWRK16,
author = {A. Mac{\'{e}} and
M. A. Tuke and
Jacques S. Beckmann and
L. Lin and
S. Jacquemont and
Michael N. Weedon and
Alexandre Reymond and
Z. Kutalik},
title = {New quality measure for {SNP} array based {CNV} detection},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3298--3305},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw477},
doi = {10.1093/BIOINFORMATICS/BTW477},
timestamp = {Sat, 27 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaceTBLJWRK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MachadoP16,
author = {Mat{\'{\i}}as R. Machado and
Sergio Pantano},
title = {{SIRAH} tools: mapping, backmapping and visualization of coarse-grained
models},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1568--1570},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw020},
doi = {10.1093/BIOINFORMATICS/BTW020},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MachadoP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MadarB16,
author = {Vered Madar and
Sandra Batista},
title = {FastLSU: a more practical approach for the Benjamini-Hochberg {FDR}
controlling procedure for huge-scale testing problems},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1716--1723},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw029},
doi = {10.1093/BIOINFORMATICS/BTW029},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MadarB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MahieuSP16,
author = {Nathaniel G. Mahieu and
Jonathan L. Spalding and
Gary J. Patti},
title = {Warpgroup: increased precision of metabolomic data processing by consensus
integration bound analysis},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {268--275},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv564},
doi = {10.1093/BIOINFORMATICS/BTV564},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MahieuSP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalekIAB16,
author = {Maximilian Malek and
Rashid Ibragimov and
Mario Albrecht and
Jan Baumbach},
title = {CytoGEDEVO - global alignment of biological networks with Cytoscape},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1259--1261},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv732},
doi = {10.1093/BIOINFORMATICS/BTV732},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalekIAB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MallENVFL16,
author = {Tarun Mall and
John Eckstein and
David C. Norris and
Hiral Vora and
Nowlan H. Freese and
Ann E. Loraine},
title = {ProtAnnot: an App for Integrated Genome Browser to display how alternative
splicing and transcription affect proteins},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2499--2501},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw068},
doi = {10.1093/BIOINFORMATICS/BTW068},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MallENVFL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalloryZRA16,
author = {Emily K. Mallory and
Ce Zhang and
Christopher R{\'{e}} and
Russ B. Altman},
title = {Large-scale extraction of gene interactions from full-text literature
using DeepDive},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {106--113},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv476},
doi = {10.1093/BIOINFORMATICS/BTV476},
timestamp = {Tue, 12 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalloryZRA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MamunPR16,
author = {Abdullah{-}Al Mamun and
Soumitra Pal and
Sanguthevar Rajasekaran},
title = {{KCMBT:} a \emph{k}-mer Counter based on Multiple Burst Trees},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2783--2790},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw345},
doi = {10.1093/BIOINFORMATICS/BTW345},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MamunPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManimaranSORLQH16,
author = {Solaiappan Manimaran and
Heather Marie Selby and
Kwame Okrah and
Claire Ruberman and
Jeffrey T. Leek and
John Quackenbush and
Benjamin Haibe{-}Kains and
H{\'{e}}ctor Corrada Bravo and
W. Evan Johnson},
title = {BatchQC: interactive software for evaluating sample and batch effects
in genomic data},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3836--3838},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw538},
doi = {10.1093/BIOINFORMATICS/BTW538},
timestamp = {Thu, 16 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManimaranSORLQH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Marchetti-Bowick16,
author = {Micol Marchetti{-}Bowick and
Junming Yin and
Judie A. Howrylak and
Eric P. Xing},
title = {A time-varying group sparse additive model for genome-wide association
studies of dynamic complex traits},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2903--2910},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw347},
doi = {10.1093/BIOINFORMATICS/BTW347},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Marchetti-Bowick16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MareeRSHLVBKGW16,
author = {Rapha{\"{e}}l Mar{\'{e}}e and
Loic Rollus and
Benjamin Stevens and
Renaud Hoyoux and
Gilles Louppe and
Remy Vandaele and
Jean{-}Michel Begon and
Philipp Kainz and
Pierre Geurts and
Louis Wehenkel},
title = {Collaborative analysis of multi-gigapixel imaging data using Cytomine},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1395--1401},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw013},
doi = {10.1093/BIOINFORMATICS/BTW013},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MareeRSHLVBKGW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Margelevicius16,
author = {Mindaugas Margelevicius},
title = {Bayesian nonparametrics in protein remote homology search},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2744--2752},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw213},
doi = {10.1093/BIOINFORMATICS/BTW213},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Margelevicius16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarietteEBINTGK16,
author = {J{\'{e}}r{\^{o}}me Mariette and
Fr{\'{e}}d{\'{e}}ric Escudi{\'{e}} and
Philippe Bardou and
Nabihoudine Ibouniyamine and
C{\'{e}}line Noirot and
Marie{-}St{\'{e}}phane Trotard and
Christine Gaspin and
Christophe Klopp},
title = {Jflow: a workflow management system for web applications},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {456--458},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv589},
doi = {10.1093/BIOINFORMATICS/BTV589},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarietteEBINTGK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Marin-RieraBZVS16,
author = {Miquel Marin{-}Riera and
Miguel Brun{-}Usan and
Roland Zimm and
Tommi V{\"{a}}likangas and
Isaac Salazar{-}Ciudad},
title = {Computational modeling of development by epithelia, mesenchyme and
their interactions: a unified model},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {219--225},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv527},
doi = {10.1093/BIOINFORMATICS/BTV527},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Marin-RieraBZVS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarzoukaNBLSA16,
author = {Nour{-}al{-}dain Marzouka and
Jessica Nordlund and
Christofer L. B{\"{a}}cklin and
Gudmar L{\"{o}}nnerholm and
Ann{-}Christine Syv{\"{a}}nen and
Jonas Carlsson Alml{\"{o}}f},
title = {CopyNumber450kCancer: baseline correction for accurate copy number
calling from the 450k methylation array},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1080--1082},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv652},
doi = {10.1093/BIOINFORMATICS/BTV652},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarzoukaNBLSA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Matschiner16,
author = {Michael Matschiner},
title = {Fitchi: haplotype genealogy graphs based on the Fitch algorithm},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1250--1252},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv717},
doi = {10.1093/BIOINFORMATICS/BTV717},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Matschiner16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatsuiMIMS16,
author = {Yusuke Matsui and
Masahiro Mizuta and
Satoshi Ito and
Satoru Miyano and
Teppei Shimamura},
title = {D\({}^{\mbox{3}}\)M: detection of differential distributions of methylation
levels},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2248--2255},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw138},
doi = {10.1093/BIOINFORMATICS/BTW138},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatsuiMIMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MattielloVFRSBT16,
author = {Federico Mattiello and
Bie M. P. Verbist and
Karoline Faust and
Jeroen Raes and
William D. Shannon and
Luc Bijnens and
Olivier Thas},
title = {A web application for sample size and power calculation in case-control
microbiome studies},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2038--2040},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw099},
doi = {10.1093/BIOINFORMATICS/BTW099},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MattielloVFRSBT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatveevaNRRNOS16,
author = {Olga V. Matveeva and
Yury D. Nechipurenko and
Evgeniy Riabenko and
Chikako Ragan and
Nafisa N. Nazipova and
Aleksey Y. Ogurtsov and
Svetlana A. Shabalina},
title = {Optimization of signal-to-noise ratio for efficient microarray probe
design},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {552--558},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw451},
doi = {10.1093/BIOINFORMATICS/BTW451},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatveevaNRRNOS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MayBEKZCHA16,
author = {Ali May and
Bernd W. Brandt and
Mohammed El{-}Kebir and
Gunnar W. Klau and
Egija Zaura and
Wim Crielaard and
Jaap Heringa and
Sanne Abeln},
title = {metaModules identifies key functional subnetworks in microbiome-related
disease},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1678--1685},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv526},
doi = {10.1093/BIOINFORMATICS/BTV526},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MayBEKZCHA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MazanduCMM16,
author = {Gaston K. Mazandu and
Emile R. Chimusa and
Mamana Mbiyavanga and
Nicola J. Mulder},
title = {A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional
analysis tool},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {477--479},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv590},
doi = {10.1093/BIOINFORMATICS/BTV590},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MazanduCMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MazouchiM16,
author = {A. Mazouchi and
Joshua N. Milstein},
title = {Fast Optimized Cluster Algorithm for Localizations {(FOCAL):} a spatial
cluster analysis for super-resolved microscopy},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {747--754},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv630},
doi = {10.1093/BIOINFORMATICS/BTV630},
timestamp = {Thu, 19 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MazouchiM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MazzaKWS16,
author = {Arnon Mazza and
Konrad Klockmeier and
Erich E. Wanker and
Roded Sharan},
title = {An integer programming framework for inferring disease complexes from
network data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {271--277},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw263},
doi = {10.1093/BIOINFORMATICS/BTW263},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MazzaKWS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MazzaKWS16a,
author = {Arnon Mazza and
Konrad Klockmeier and
Erich E. Wanker and
Roded Sharan},
title = {An integer programming framework for inferring disease complexes from
network data},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3855},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw692},
doi = {10.1093/BIOINFORMATICS/BTW692},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MazzaKWS16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MelottWB16,
author = {James M. Melott and
John N. Weinstein and
Bradley M. Broom},
title = {PathwaysWeb: a gene pathways {API} with directional interactions,
expanded gene ontology, and versioning},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {312--314},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv554},
doi = {10.1093/BIOINFORMATICS/BTV554},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MelottWB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MendelowitzSP16,
author = {Lee Mendelowitz and
David C. Schwartz and
Mihai Pop},
title = {Maligner: a fast ordered restriction map aligner},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1016--1022},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv711},
doi = {10.1093/BIOINFORMATICS/BTV711},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MendelowitzSP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengK16,
author = {Fanchi Meng and
Lukasz A. Kurgan},
title = {DFLpred: High-throughput prediction of disordered flexible linker
regions in protein sequences},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {341--350},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw280},
doi = {10.1093/BIOINFORMATICS/BTW280},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MengK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengSM16,
author = {Lei Meng and
Aaron Striegel and
Tijana Milenkovic},
title = {Local versus global biological network alignment},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3155--3164},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw348},
doi = {10.1093/BIOINFORMATICS/BTW348},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MengSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MesuereWJDVD16,
author = {Bart Mesuere and
Toon Willems and
Felix Van der Jeugt and
Bart Devreese and
Peter Vandamme and
Peter Dawyndt},
title = {Unipept web services for metaproteomics analysis},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1746--1748},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw039},
doi = {10.1093/BIOINFORMATICS/BTW039},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MesuereWJDVD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerGY16,
author = {Michael J. Meyer and
Philip Geske and
Haiyuan Yu},
title = {{BISQUE:} locus- and variant-specific conversion of genomic, transcriptomic
and proteomic database identifiers},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1598--1600},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw043},
doi = {10.1093/BIOINFORMATICS/BTW043},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerGY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MikheenkoSG16,
author = {Alla Mikheenko and
Vladislav Saveliev and
Alexey A. Gurevich},
title = {MetaQUAST: evaluation of metagenome assemblies},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1088--1090},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv697},
doi = {10.1093/BIOINFORMATICS/BTV697},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MikheenkoSG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MikheenkoVPSG16,
author = {Alla Mikheenko and
Gleb Valin and
Andrey D. Prjibelski and
Vladislav Saveliev and
Alexey A. Gurevich},
title = {Icarus: visualizer for \emph{de novo} assembly evaluation},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3321--3323},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw379},
doi = {10.1093/BIOINFORMATICS/BTW379},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MikheenkoVPSG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MilanettiRT16,
author = {Edoardo Milanetti and
Domenico Raimondo and
Anna Tramontano},
title = {Prediction of the permeability of neutral drugs inferred from their
solvation properties},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1163--1169},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv725},
doi = {10.1093/BIOINFORMATICS/BTV725},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MilanettiRT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillsteinCB16,
author = {Joshua Millstein and
Gary K. Chen and
Carrie V. Breton},
title = {cit: hypothesis testing software for mediation analysis in genomic
applications},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2364--2365},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw135},
doi = {10.1093/BIOINFORMATICS/BTW135},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MillsteinCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MischnikSCSSHC016,
author = {Marcel Mischnik and
Francesca Sacco and
J{\"{u}}rgen Cox and
Hans{-}Christoph Schneider and
Matthias Sch{\"{a}}fer and
Manfred Hendlich and
Daniel Crowther and
Matthias Mann and
Thomas Klabunde},
title = {{IKAP:} {A} heuristic framework for inference of kinase activities
from Phosphoproteomics data},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {424--431},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv699},
doi = {10.1093/BIOINFORMATICS/BTV699},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MischnikSCSSHC016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MisirliCWPMGHZD16,
author = {Goksel Misirli and
Matteo Cavaliere and
William Waites and
Matthew R. Pocock and
Curtis Madsen and
Owen Gilfellon and
Ricardo Honorato{-}Zimmer and
Paolo Zuliani and
Vincent Danos and
Anil Wipat},
title = {Annotation of rule-based models with formal semantics to enable creation,
analysis, reuse and visualization},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {908--917},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv660},
doi = {10.1093/BIOINFORMATICS/BTV660},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MisirliCWPMGHZD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MitraN16,
author = {Sneha Mitra and
Leelavati Narlikar},
title = {No Promoter Left Behind {(NPLB):} learn \emph{de novo} promoter architectures
from genome-wide transcription start sites},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {779--781},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv645},
doi = {10.1093/BIOINFORMATICS/BTV645},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MitraN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MixcohaRGP16,
author = {Edgar Mixcoha and
Roberto Rosende and
Rebeca Garc{\'{\i}}a{-}Fandi{\~{n}}o and
{\'{A}}ngel Pi{\~{n}}eiro},
title = {Cyclo-lib: a database of computational molecular dynamics simulations
of cyclodextrins},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3371--3373},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw289},
doi = {10.1093/BIOINFORMATICS/BTW289},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MixcohaRGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MohamadiCVB16,
author = {Hamid Mohamadi and
Justin Chu and
Benjamin P. Vandervalk and
Inan{\c{c}} Birol},
title = {ntHash: recursive nucleotide hashing},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3492--3494},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw397},
doi = {10.1093/BIOINFORMATICS/BTW397},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MohamadiCVB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MohamedNM16,
author = {Ahmed Mohamed and
Canh Hao Nguyen and
Hiroshi Mamitsuka},
title = {NMRPro: an integrated web component for interactive processing and
visualization of {NMR} spectra},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2067--2068},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw102},
doi = {10.1093/BIOINFORMATICS/BTW102},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MohamedNM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MohammadiG16,
author = {Shahin Mohammadi and
Ananth Grama},
title = {A convex optimization approach for identification of human tissue-specific
interactomes},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {243--252},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw245},
doi = {10.1093/BIOINFORMATICS/BTW245},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MohammadiG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MonacoCPCML16,
author = {Gianni Monaco and
Hao Chen and
Michael Poidinger and
Jinmiao Chen and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es and
Anis Larbi},
title = {flowAI: automatic and interactive anomaly discerning tools for flow
cytometry data},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2473--2480},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw191},
doi = {10.1093/BIOINFORMATICS/BTW191},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MonacoCPCML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MontazeriKKBYKA16,
author = {Hesam Montazeri and
Jack Kuipers and
Roger D. Kouyos and
J{\"{u}}rg B{\"{o}}ni and
Sabine Yerly and
Thomas Klimkait and
Vincent Aubert and
Huldrych F. G{\"{u}}nthard and
Niko Beerenwinkel and
The Swiss Hiv Cohort Study},
title = {Large-scale inference of conjunctive Bayesian networks},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {727--735},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw459},
doi = {10.1093/BIOINFORMATICS/BTW459},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MontazeriKKBYKA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MooneyBRH16,
author = {Catherine Mooney and
Brett A. Becker and
Rana Raoof and
David C. Henshall},
title = {EpimiRBase: a comprehensive database of microRNA-epilepsy associations},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1436--1438},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw008},
doi = {10.1093/BIOINFORMATICS/BTW008},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MooneyBRH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoseSBMISPVP16,
author = {Lisle E. Mose and
Sara R. Selitsky and
Lisa M. Bixby and
David L. Marron and
Michael D. Iglesia and
Jonathan S. Serody and
Charles M. Perou and
Benjamin Vincent and
Joel S. Parker},
title = {Assembly-based inference of B-cell receptor repertoires from short
read {RNA} sequencing data with V'DJer},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3729--3734},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw526},
doi = {10.1093/BIOINFORMATICS/BTW526},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoseSBMISPVP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuellerBGBKMKMK16,
author = {Sabine C. Mueller and
Christina Backes and
Alexander Gre{\ss} and
Nina Baumgarten and
Olga V. Kalinina and
Andreas Moll and
Oliver Kohlbacher and
Eckart Meese and
Andreas Keller},
title = {BALL-SNPgp - from genetic variants toward computational diagnostics},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1888--1890},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw084},
doi = {10.1093/BIOINFORMATICS/BTW084},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuellerBGBKMKMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeeBC16,
author = {Sumanta Mukherjee and
Chiranjib Bhattacharyya and
Nagasuma Chandra},
title = {HLaffy: estimating peptide affinities for Class-1 {HLA} molecules
by learning position-specific pair potentials},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2297--2305},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw156},
doi = {10.1093/BIOINFORMATICS/BTW156},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeeBC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeeS16,
author = {Sumit Mukherjee and
Supratim Sengupta},
title = {Riboswitch Scanner: an efficient pHMM-based web-server to detect riboswitches
in genomic sequences},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {776--778},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv640},
doi = {10.1093/BIOINFORMATICS/BTV640},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeeS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MurilloYSCRLNC16,
author = {Gabriel H. Murillo and
Na You and
Xiaoquan Su and
Wei Cui and
Muredach P. Reilly and
Mingyao Li and
Kang Ning and
Xinping Cui},
title = {MultiGeMS: detection of SNVs from multiple samples using model selection
on high-throughput sequencing data},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1486--1492},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv753},
doi = {10.1093/BIOINFORMATICS/BTV753},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MurilloYSCRLNC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MusselSBHLK16,
author = {Christoph M{\"{u}}ssel and
Florian Schmid and
Tamara J. Bl{\"{a}}tte and
Martin Hopfensitz and
Ludwig Lausser and
Hans A. Kestler},
title = {BiTrinA - multiscale binarization and trinarization with quality analysis},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {465--468},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv591},
doi = {10.1093/BIOINFORMATICS/BTV591},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MusselSBHLK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NabaviSMMB16,
author = {Sheida Nabavi and
Daniel Schmolze and
Mayinuer Maitituoheti and
Sadhika Malladi and
Andrew H. Beck},
title = {EMDomics: a robust and powerful method for the identification of genes
differentially expressed between heterogeneous classes},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {533--541},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv634},
doi = {10.1093/BIOINFORMATICS/BTV634},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NabaviSMMB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NandalKM16,
author = {Umesh K. Nandal and
Antoine H. C. van Kampen and
Perry D. Moerland},
title = {compendiumdb: an {R} package for retrieval and storage of functional
genomics data},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2856--2857},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw335},
doi = {10.1093/BIOINFORMATICS/BTW335},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NandalKM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NapolitanoSCB16,
author = {Francesco Napolitano and
Francesco Sirci and
Diego Carrella and
Diego di Bernardo},
title = {Drug-set enrichment analysis: a novel tool to investigate drug mode
of action},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {235--241},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv536},
doi = {10.1093/BIOINFORMATICS/BTV536},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NapolitanoSCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NarasimhanDSXTD16,
author = {Vagheesh Narasimhan and
Petr Danecek and
Aylwyn Scally and
Yali Xue and
Chris Tyler{-}Smith and
Richard Durbin},
title = {BCFtools/RoH: a hidden Markov model approach for detecting autozygosity
from next-generation sequencing data},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1749--1751},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw044},
doi = {10.1093/BIOINFORMATICS/BTW044},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NarasimhanDSXTD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NarushimaKTIO16,
author = {Yuta Narushima and
Hiroko Kozuka{-}Hata and
Kouhei Tsumoto and
Jun{-}Ichiro Inoue and
Masaaki Oyama},
title = {Quantitative phosphoproteomics-based molecular network description
for high-resolution kinase-substrate interactome analysis},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2083--2088},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw164},
doi = {10.1093/BIOINFORMATICS/BTW164},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NarushimaKTIO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NattestadS16,
author = {Maria Nattestad and
Michael C. Schatz},
title = {Assemblytics: a web analytics tool for the detection of variants from
an assembly},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3021--3023},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw369},
doi = {10.1093/BIOINFORMATICS/BTW369},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NattestadS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NelloreWHLL16,
author = {Abhinav Nellore and
Christopher Wilks and
Kasper D. Hansen and
Jeffrey T. Leek and
Ben Langmead},
title = {Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon
Elastic MapReduce},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2551--2553},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw177},
doi = {10.1093/BIOINFORMATICS/BTW177},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NelloreWHLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeveuRPG16,
author = {{\'{E}}milie Neveu and
David W. Ritchie and
Petr Popov and
Sergei Grudinin},
title = {PEPSI-Dock: a detailed data-driven protein-protein interaction potential
accelerated by polar Fourier correlation},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {693--701},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw443},
doi = {10.1093/BIOINFORMATICS/BTW443},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeveuRPG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NgaiMS16,
author = {Jimmy C. F. Ngai and
Pui{-}In Mak and
Shirley W. I. Siu},
title = {ProtPOS: a python package for the prediction of protein preferred
orientation on a surface},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2537--2538},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw182},
doi = {10.1093/BIOINFORMATICS/BTW182},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NgaiMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenH16,
author = {Thach Nguyen and
Michael Habeck},
title = {A probabilistic model for detecting rigid domains in protein structures},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {710--717},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw442},
doi = {10.1093/BIOINFORMATICS/BTW442},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenTDMD16,
author = {Tin Chi Nguyen and
Rebecca Tagett and
Michele Donato and
Cristina Mitrea and
Sorin Draghici},
title = {A novel bi-level meta-analysis approach: applied to biological pathway
analysis},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {409--416},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv588},
doi = {10.1093/BIOINFORMATICS/BTV588},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenTDMD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NichollsCR16,
author = {Samuel M. Nicholls and
Amanda Clare and
Joshua C. Randall},
title = {Goldilocks: a tool for identifying genomic regions that are 'just
right'},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2047--2049},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw116},
doi = {10.1093/BIOINFORMATICS/BTW116},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NichollsCR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NikooienejadWJ16,
author = {Amir Nikooienejad and
Wenyi Wang and
Valen E. Johnson},
title = {Bayesian variable selection for binary outcomes in high-dimensional
genomic studies using non-local priors},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1338--1345},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv764},
doi = {10.1093/BIOINFORMATICS/BTV764},
timestamp = {Fri, 26 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NikooienejadWJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiuCEKR16,
author = {Zhen Niu and
Deborah Chasman and
Amie J. Eisfeld and
Yoshihiro Kawaoka and
Sushmita Roy},
title = {Multi-task consensus clustering of genome-wide transcriptomes from
related biological conditions},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1509--1517},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw007},
doi = {10.1093/BIOINFORMATICS/BTW007},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiuCEKR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiuXT16,
author = {Liang Niu and
Zongli Xu and
Jack A. Taylor},
title = {{RCP:} a novel probe design bias correction method for Illumina Methylation
BeadChip},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2659--2663},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw285},
doi = {10.1093/BIOINFORMATICS/BTW285},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiuXT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NohG16,
author = {Heeju Noh and
Rudiyanto Gunawan},
title = {Inferring gene targets of drugs and chemical compounds from gene expression
profiles},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2120--2127},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw148},
doi = {10.1093/BIOINFORMATICS/BTW148},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NohG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NovichkovKAK16,
author = {Vladimir Novichkov and
Anna Kaznadzey and
Natalia Alexandrova and
Denis Kaznadzey},
title = {NSimScan: {DNA} comparison tool with increased speed, sensitivity
and accuracy},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2380--2381},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw126},
doi = {10.1093/BIOINFORMATICS/BTW126},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NovichkovKAK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OConnellL16,
author = {Michael J. O'Connell and
Eric F. Lock},
title = {{R.JIVE} for exploration of multi-source molecular data},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2877--2879},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw324},
doi = {10.1093/BIOINFORMATICS/BTW324},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OConnellL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OFallon16,
author = {Brendan O'Fallon},
title = {TreesimJ: a flexible, forward time population genetic simulator},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2242},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw236},
doi = {10.1093/BIOINFORMATICS/BTW236},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OFallon16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Odenthal-HesseD16,
author = {Linda Odenthal{-}Hesse and
Julien Y. Dutheil and
Fabian Kl{\"{o}}tzl and
Bernhard Haubold},
title = {hotspot: software to support sperm-typing for investigating recombination
hotspots},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2554--2555},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw195},
doi = {10.1093/BIOINFORMATICS/BTW195},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Odenthal-HesseD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OkonechnikovCG16,
author = {Konstantin Okonechnikov and
Ana Conesa and
Fernando Garc{\'{\i}}a{-}Alcalde},
title = {Qualimap 2: advanced multi-sample quality control for high-throughput
sequencing data},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {292--294},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv566},
doi = {10.1093/BIOINFORMATICS/BTV566},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OkonechnikovCG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlivaresBN16,
author = {Andy L. Olivares and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
J{\'{e}}r{\^{o}}me Noailly},
title = {Virtual exploration of early stage atherosclerosis},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3798--3806},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw551},
doi = {10.1093/BIOINFORMATICS/BTW551},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlivaresBN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OngenBBDD16,
author = {Halit Ongen and
Alfonso Buil and
Andrew Anand Brown and
Emmanouil T. Dermitzakis and
Olivier Delaneau},
title = {Fast and efficient {QTL} mapper for thousands of molecular phenotypes},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1479--1485},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv722},
doi = {10.1093/BIOINFORMATICS/BTV722},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OngenBBDD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrensteinWB16,
author = {Yaron Orenstein and
Yuhao Wang and
Bonnie Berger},
title = {{RCK:} accurate and efficient inference of sequence- and structure-based
protein-RNA binding models from RNAcompete data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {351--359},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw259},
doi = {10.1093/BIOINFORMATICS/BTW259},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrensteinWB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrosticaV16,
author = {Karen Y. Or{\'{o}}stica and
Ricardo A. Verdugo},
title = {chromPlot: visualization of genomic data in chromosomal context},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2366--2368},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw137},
doi = {10.1093/BIOINFORMATICS/BTW137},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrosticaV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OskarsdottirMM16,
author = {Arna {\'{O}}skarsd{\'{o}}ttir and
G{\'{\i}}sli M{\'{a}}sson and
P{\'{a}}ll Melsted},
title = {BamHash: a checksum program for verifying the integrity of sequence
data},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {140--141},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv539},
doi = {10.1093/BIOINFORMATICS/BTV539},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OskarsdottirMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OteguiG16,
author = {Javier Otegui and
Robert P. Guralnick},
title = {The geospatial data quality {REST} {API} for primary biodiversity
data},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1755--1757},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw057},
doi = {10.1093/BIOINFORMATICS/BTW057},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OteguiG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Otero-MurasHB16,
author = {Irene Otero{-}Muras and
David Henriques and
Julio R. Banga},
title = {SYNBADm: a tool for optimization-based automated design of synthetic
gene circuits},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3360--3362},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw415},
doi = {10.1093/BIOINFORMATICS/BTW415},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Otero-MurasHB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OunitL16,
author = {Rachid Ounit and
Stefano Lonardi},
title = {Higher classification sensitivity of short metagenomic reads with
CLARK-\emph{S}},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3823--3825},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw542},
doi = {10.1093/BIOINFORMATICS/BTW542},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OunitL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PackerMOLDCBOHR16,
author = {Jonathan S. Packer and
Evan K. Maxwell and
Colm O'Dushlaine and
Alexander E. Lopez and
Frederick E. Dewey and
Rostislav Chernomorsky and
Aris Baras and
John D. Overton and
Lukas Habegger and
Jeffrey G. Reid},
title = {{CLAMMS:} a scalable algorithm for calling common and rare copy number
variants from exome sequencing data},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {133--135},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv547},
doi = {10.1093/BIOINFORMATICS/BTV547},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PackerMOLDCBOHR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PakhomovFMWM16,
author = {Serguei V. S. Pakhomov and
Gregory P. Finley and
Reed McEwan and
Yan Wang and
Genevieve B. Melton},
title = {Corpus domain effects on distributional semantic modeling of medical
terms},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3635--3644},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw529},
doi = {10.1093/BIOINFORMATICS/BTW529},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PakhomovFMWM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Palamara16,
author = {Pier Francesco Palamara},
title = {{ARGON:} fast, whole-genome simulation of the discrete time Wright-fisher
process},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3032--3034},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw355},
doi = {10.1093/BIOINFORMATICS/BTW355},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Palamara16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PaleyKK16,
author = {Suzanne M. Paley and
Markus Krummenacker and
Peter D. Karp},
title = {Representation and inference of cellular architecture for metabolic
reconstruction and modeling},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1074--1079},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv702},
doi = {10.1093/BIOINFORMATICS/BTV702},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PaleyKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalmaSA16,
author = {Eduardo Palma and
Lilian Salinas and
Julio Aracena},
title = {Enumeration and extension of non-equivalent deterministic update schedules
in Boolean networks},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {722--729},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv628},
doi = {10.1093/BIOINFORMATICS/BTV628},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PalmaSA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PangEHKJHBCWVDF16,
author = {Chao Pang and
David van Enckevort and
Mark de Haan and
Fleur D. L. Kelpin and
Jonathan Jetten and
Dennis Hendriksen and
Tommy de Boer and
Bart Charbon and
Erwin Winder and
K. Joeri van der Velde and
Dany Doiron and
Isabel Fortier and
Hans L. Hillege and
Morris A. Swertz},
title = {MOLGENIS/connect: a system for semi-automatic integration of heterogeneous
phenotype data with applications in biobanks},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2176--2183},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw155},
doi = {10.1093/BIOINFORMATICS/BTW155},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PangEHKJHBCWVDF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanjkovichS16,
author = {Alejandro Panjkovich and
Dmitri I. Svergun},
title = {SASpy: a PyMOL plugin for manipulation and refinement of hybrid models
against small angle X-ray scattering data},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2062--2064},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw071},
doi = {10.1093/BIOINFORMATICS/BTW071},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanjkovichS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PantanoFELPFEM16,
author = {Lorena Pantano and
Marc R. Friedl{\"{a}}nder and
Ge{\`{o}}rgia Escaram{\'{\i}}s and
Esther Lizano and
Joan Pallar{\`{e}}s{-}Albanell and
Isidre Ferrer and
Xavier Estivill and
Eulalia Mart{\'{\i}}},
title = {Specific small-RNA signatures in the amygdala at premotor and motor
stages of Parkinson's disease revealed by deep sequencing analysis},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {673--681},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv632},
doi = {10.1093/BIOINFORMATICS/BTV632},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PantanoFELPFEM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PappalardoFPLPR16,
author = {Francesco Pappalardo and
Epifanio Fichera and
Nicoletta Paparone and
Alessandro Lombardo and
Marzio Pennisi and
Giulia Russo and
Marco Leotta and
Alessandro Pedretti and
Francesco De Fiore and
Santo Motta},
title = {A computational model to predict the immune system activation by citrus-derived
vaccine adjuvants},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2672--2680},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw293},
doi = {10.1093/BIOINFORMATICS/BTW293},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PappalardoFPLPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkKB16,
author = {Jeongbin Park and
Jin{-}Soo Kim and
Sangsu Bae},
title = {Cas-Database: web-based genome-wide guide {RNA} library design for
gene knockout screens using CRISPR-Cas9},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2017--2023},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw103},
doi = {10.1093/BIOINFORMATICS/BTW103},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkKYPGPCNWCKY16,
author = {Sunho Park and
Seung{-}Jun Kim and
Donghyeon Yu and
Samuel Pe{\~{n}}a{-}Llopis and
Jianjiong Gao and
Jinsuk Park and
Beibei Chen and
Jessie Norris and
Xinlei Wang and
Min Chen and
Min{-}Su Kim and
Jeongsik Yong and
Zabi Wardak and
Kevin Choe and
Michael Story and
Timothy K. Starr and
Jae{-}Ho Cheong and
TaeHyun Hwang},
title = {An integrative somatic mutation analysis to identify pathways linked
with survival outcomes across 19 cancer types},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1643--1651},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv692},
doi = {10.1093/BIOINFORMATICS/BTV692},
timestamp = {Wed, 25 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkKYPGPCNWCKY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkW16,
author = {Yongseok Park and
Hao Wu},
title = {Differential methylation analysis for BS-seq data under general experimental
design},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1446--1453},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw026},
doi = {10.1093/BIOINFORMATICS/BTW026},
timestamp = {Mon, 30 Mar 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParraRKPY16,
author = {R. Gonzalo Parra and
Cristian Oscar Rohr and
Daniel Koile and
Carolina Perez{-}Castro and
Patricio Yankilevich},
title = {{INSECT} 2.0: a web-server for genome-wide \emph{cis}-regulatory modules
prediction},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1229--1231},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv726},
doi = {10.1093/BIOINFORMATICS/BTV726},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParraRKPY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatelRKNM16,
author = {Parth Patel and
S. Deepthi Ramachandruni and
Atul Kakrana and
Mayumi Nakano and
Blake C. Meyers},
title = {miTRATA: a web-based tool for \emph{mi}croRNA \emph{Tr}uncation \emph{a}nd
\emph{T}ailing \emph{A}nalysis},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {450--452},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv583},
doi = {10.1093/BIOINFORMATICS/BTV583},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatelRKNM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengWWWC16,
author = {Jiajie Peng and
Tao Wang and
Jixuan Wang and
Yadong Wang and
Jin Chen},
title = {Extending gene ontology with gene association networks},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1185--1194},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv712},
doi = {10.1093/BIOINFORMATICS/BTV712},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengWWWC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengYLZDWDWSJ16,
author = {Yousong Peng and
Lei Yang and
Honglei Li and
Yuanqiang Zou and
Lizong Deng and
Aiping Wu and
Xiangjun Du and
Dayan Wang and
Yuelong Shu and
Taijiao Jiang},
title = {{PREDAC-H3:} a user-friendly platform for antigenic surveillance of
human influenza a(H3N2) virus based on hemagglutinin sequences},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2526--2527},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw185},
doi = {10.1093/BIOINFORMATICS/BTW185},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengYLZDWDWSJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengYWZMZ16,
author = {Shengwen Peng and
Ronghui You and
Hongning Wang and
Chengxiang Zhai and
Hiroshi Mamitsuka and
Shanfeng Zhu},
title = {DeepMeSH: deep semantic representation for improving large-scale MeSH
indexing},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {70--79},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw294},
doi = {10.1093/BIOINFORMATICS/BTW294},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengYWZMZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PerreaultLAD16,
author = {Louis{-}Philippe Lemieux Perreault and
Marc{-}Andr{\'{e}} Legault and
G{\'{e}}raldine Asselin and
Marie{-}Pierre Dub{\'{e}}},
title = {\emph{genipe}: an automated genome-wide imputation pipeline with automatic
reporting and statistical tools},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3661--3663},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw487},
doi = {10.1093/BIOINFORMATICS/BTW487},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PerreaultLAD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PesaranghaderMS16,
author = {Ahmad Pesaranghader and
Stan Matwin and
Marina Sokolova and
Robert G. Beiko},
title = {simDEF: definition-based semantic similarity measure of gene ontology
terms for functional similarity analysis of genes},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1380--1387},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv755},
doi = {10.1093/BIOINFORMATICS/BTV755},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PesaranghaderMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetersTSE16,
author = {Christoph Peters and
Konstantinos D. Tsirigos and
Nanjiang Shu and
Arne Elofsson},
title = {Improved topology prediction using the terminal hydrophobic helices
rule},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1158--1162},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv709},
doi = {10.1093/BIOINFORMATICS/BTV709},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetersTSE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetersonBBS16,
author = {Christine B. Peterson and
M. Bogomolov and
Yoav Benjamini and
Chiara Sabatti},
title = {TreeQTL: hierarchical error control for eQTL findings},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2556--2558},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw198},
doi = {10.1093/BIOINFORMATICS/BTW198},
timestamp = {Sun, 08 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetersonBBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhamJ16,
author = {Thang V. Pham and
Connie R. Jimenez},
title = {Simulated linear test applied to quantitative proteomics},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {702--709},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw440},
doi = {10.1093/BIOINFORMATICS/BTW440},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhamJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhilippOK16,
author = {Oliver Philipp and
Heinz D. Osiewacz and
Ina Koch},
title = {Path2PPI: an {R} package to predict protein-protein interaction networks
for a set of proteins},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1427--1429},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv765},
doi = {10.1093/BIOINFORMATICS/BTV765},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhilippOK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhipsonMO16,
author = {Belinda Phipson and
Jovana Maksimovic and
Alicia Oshlack},
title = {missMethyl: an {R} package for analyzing data from Illumina's HumanMethylation450
platform},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {286--288},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv560},
doi = {10.1093/BIOINFORMATICS/BTV560},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhipsonMO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiccininiKH16,
author = {Filippo Piccinini and
Alexa Kiss and
P{\'{e}}ter Horv{\'{a}}th},
title = {CellTracker (not only) for dummies},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {955--957},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv686},
doi = {10.1093/BIOINFORMATICS/BTV686},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiccininiKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PickettKPCESWR16,
author = {Brandon D. Pickett and
S. M. Karlinsey and
C. E. Penrod and
Michael J. Cormier and
Mark T. W. Ebbert and
Dennis K. Shiozawa and
C. J. Whipple and
Perry G. Ridge},
title = {{SA-SSR:} a suffix array-based algorithm for exhaustive and efficient
{SSR} discovery in large genetic sequences},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2707--2709},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw298},
doi = {10.1093/BIOINFORMATICS/BTW298},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PickettKPCESWR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Pignatelli16,
author = {Miguel Pignatelli},
title = {TnT: a set of libraries for visualizing trees and track-based annotations
for the web},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2524--2525},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw210},
doi = {10.1093/BIOINFORMATICS/BTW210},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Pignatelli16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PirklHKS16,
author = {Martin Pirkl and
Elisabeth Hand and
Dieter Kube and
Rainer Spang},
title = {Analyzing synergistic and non-synergistic interactions in signalling
pathways using Boolean Nested Effect Models},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {893--900},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv680},
doi = {10.1093/BIOINFORMATICS/BTV680},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PirklHKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiroLR16,
author = {Vitor Piro and
Martin S. Lindner and
Bernhard Y. Renard},
title = {DUDes: a top-down taxonomic profiler for metagenomics},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2272--2280},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw150},
doi = {10.1093/BIOINFORMATICS/BTW150},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiroLR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PirolaZDKPB16,
author = {Yuri Pirola and
Simone Zaccaria and
Riccardo Dondi and
Gunnar W. Klau and
Nadia Pisanti and
Paola Bonizzoni},
title = {HapCol: accurate and memory-efficient haplotype assembly from long
reads},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1610--1617},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv495},
doi = {10.1093/BIOINFORMATICS/BTV495},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PirolaZDKPB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PliatsikaLTR16,
author = {Venetia Pliatsika and
Phillipe Loher and
Aristeidis G. Telonis and
Isidore Rigoutsos},
title = {MINTbase: a framework for the interactive exploration of mitochondrial
and nuclear tRNA fragments},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2481--2489},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw194},
doi = {10.1093/BIOINFORMATICS/BTW194},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PliatsikaLTR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PooleGSBK16,
author = {William Poole and
David L. Gibbs and
Ilya Shmulevich and
Brady Bernard and
Theo A. Knijnenburg},
title = {Combining dependent \emph{P-}values with an empirical adaptation of
Brown's method},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {430--436},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw438},
doi = {10.1093/BIOINFORMATICS/BTW438},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PooleGSBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PosticGG16,
author = {Guillaume Postic and
Yassine Ghouzam and
Jean{-}Christophe Gelly},
title = {{OREMPRO} web server: orientation and assessment of atomistic and
coarse-grained structures of membrane proteins},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2548--2550},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw208},
doi = {10.1093/BIOINFORMATICS/BTW208},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PosticGG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrlicKBCBR16,
author = {Andreas Prlic and
Tara Kalro and
Roshni Bhattacharya and
Cole H. Christie and
Stephen K. Burley and
Peter W. Rose},
title = {Integrating genomic information with protein sequence and 3D atomic
level structure at the {RCSB} protein data bank},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3833--3835},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw547},
doi = {10.1093/BIOINFORMATICS/BTW547},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrlicKBCBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProkopenkoHSPND16,
author = {Dmitry Prokopenko and
Julian Hecker and
Edwin K. Silverman and
Marcello Pagano and
Markus M. N{\"{o}}then and
Christian Dina and
Christoph Lange and
Heide Loehlein Fier},
title = {Utilizing the Jaccard index to reveal population stratification in
sequencing data: a simulation study and an application to the 1000
Genomes Project},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1366--1372},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv752},
doi = {10.1093/BIOINFORMATICS/BTV752},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProkopenkoHSPND16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PudloMECGR16,
author = {Pierre Pudlo and
Jean{-}Michel Marin and
Arnaud Estoup and
Jean{-}Marie Cornuet and
Mathieu Gautier and
Christian P. Robert},
title = {Reliable {ABC} model choice via random forests},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {859--866},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv684},
doi = {10.1093/BIOINFORMATICS/BTV684},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PudloMECGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PuspokiSWU16,
author = {Zsuzsanna P{\"{u}}sp{\"{o}}ki and
Daniel Sage and
John Paul Ward and
Michael Unser},
title = {SpotCaliper: fast wavelet-based spot detection with accurate size
estimation},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1278--1280},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv728},
doi = {10.1093/BIOINFORMATICS/BTV728},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PuspokiSWU16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QiuSXXC16,
author = {Wangren Qiu and
Bi{-}Qian Sun and
Xuan Xiao and
Zhao{-}Chun Xu and
Kuo{-}Chen Chou},
title = {iPTM-mLys: identifying multiple lysine {PTM} sites and their different
types},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3116--3123},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw380},
doi = {10.1093/BIOINFORMATICS/BTW380},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/QiuSXXC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuanLZ16,
author = {Lijun Quan and
Qiang Lv and
Yang Zhang},
title = {{STRUM:} structure-based prediction of protein stability changes upon
single-point mutation},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2936--2946},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw361},
doi = {10.1093/BIOINFORMATICS/BTW361},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuanLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Queralt-Rosinach16,
author = {N{\'{u}}ria Queralt{-}Rosinach and
Janet Pi{\~{n}}ero Gonz{\'{a}}lez and
{\`{A}}lex Bravo and
Ferran Sanz and
Laura I. Furlong},
title = {DisGeNET-RDF: harnessing the innovative power of the Semantic Web
to explore the genetic basis of diseases},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2236--2238},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw214},
doi = {10.1093/BIOINFORMATICS/BTW214},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Queralt-Rosinach16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahmanTBCFGCMHS16,
author = {Syed Asad Rahman and
Gilliean Torrance and
Lorenzo Baldacci and
Sergio Mart{\'{\i}}nez Cuesta and
Franz Fenninger and
Nimish Gopal and
Saket Choudhary and
John W. May and
Gemma L. Holliday and
Christoph Steinbeck and
Janet M. Thornton},
title = {Reaction Decoder Tool {(RDT):} extracting features from chemical reactions},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2065--2066},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw096},
doi = {10.1093/BIOINFORMATICS/BTW096},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RahmanTBCFGCMHS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaimondiGRLV16,
author = {Daniele Raimondi and
Andrea M. Gazzo and
Marianne Rooman and
Tom Lenaerts and
Wim F. Vranken},
title = {Multilevel biological characterization of exomic variants at the protein
level significantly improves the identification of their deleterious
effects},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1797--1804},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw094},
doi = {10.1093/BIOINFORMATICS/BTW094},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaimondiGRLV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RainerTDPDW16,
author = {Johannes Rainer and
Daniel Taliun and
Yuri D'Elia and
Cristian Pattaro and
Francisco S. Domingues and
Christian X. Weichenberger},
title = {FamAgg: an {R} package to evaluate familial aggregation of traits
in large pedigrees},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1583--1585},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw019},
doi = {10.1093/BIOINFORMATICS/BTW019},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RainerTDPDW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RavindranathS16,
author = {Pradeep Anand Ravindranath and
Michel F. Sanner},
title = {AutoSite: an automated approach for pseudo-ligands prediction - from
ligand-binding sites identification to predicting key ligand atoms},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3142--3149},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw367},
doi = {10.1093/BIOINFORMATICS/BTW367},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RavindranathS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReidW16,
author = {John E. Reid and
Lorenz Wernisch},
title = {Pseudotime estimation: deconfounding single cell time series},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2973--2980},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw372},
doi = {10.1093/BIOINFORMATICS/BTW372},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReidW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RenSDRCS16,
author = {Jie Ren and
Kai Song and
Minghua Deng and
Gesine Reinert and
Charles H. Cannon and
Fengzhu Sun},
title = {Inference of Markovian properties of molecular sequences from {NGS}
data and applications to comparative genomics},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {993--1000},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv395},
doi = {10.1093/BIOINFORMATICS/BTV395},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RenSDRCS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RichardAK16,
author = {Fran{\c{c}}ois D. Richard and
Ronnie Alves and
Andrey V. Kajava},
title = {Tally: a scoring tool for boundary determination between repetitive
and non-repetitive protein sequences},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1952--1958},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw118},
doi = {10.1093/BIOINFORMATICS/BTW118},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RichardAK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RichterRGP16,
author = {Michael Richter and
Ramon Rossell{\'{o}}{-}Mora and
Frank Oliver Gl{\"{o}}ckner and
J{\"{o}}rg Peplies},
title = {JSpeciesWS: a web server for prokaryotic species circumscription based
on pairwise genome comparison},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {929--931},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv681},
doi = {10.1093/BIOINFORMATICS/BTV681},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RichterRGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RiederAKLT16,
author = {Dietmar Rieder and
Thomas Amort and
Elisabeth Kugler and
Alexandra Lusser and
Zlatko Trajanoski},
title = {meRanTK: methylated {RNA} analysis ToolKit},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {782--785},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv647},
doi = {10.1093/BIOINFORMATICS/BTV647},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RiederAKLT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RiperHCG16,
author = {Susan K. Van Riper and
LeeAnn Higgins and
John V. Carlis and
Timothy J. Griffin},
title = {{RIPPER:} a framework for {MS1} only metabolomics and proteomics label-free
relative quantification},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2035--2037},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw091},
doi = {10.1093/BIOINFORMATICS/BTW091},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RiperHCG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ritchie16,
author = {David W. Ritchie},
title = {Calculating and scoring high quality multiple flexible protein structure
alignments},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2650--2658},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw300},
doi = {10.1093/BIOINFORMATICS/BTW300},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ritchie16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodriguesML16,
author = {Paulo C. Rodrigues and
Andreia Monteiro and
Vanda M. Louren{\c{c}}o},
title = {A robust {AMMI} model for the analysis of genotype-by-environment
data},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {58--66},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv533},
doi = {10.1093/BIOINFORMATICS/BTV533},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RodriguesML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RollerILRT16,
author = {Eric Roller and
Sergii Ivakhno and
Steve Lee and
Thomas Royce and
Stephen Tanner},
title = {Canvas: versatile and scalable detection of copy number variants},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2375--2377},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw163},
doi = {10.1093/BIOINFORMATICS/BTW163},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RollerILRT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RosikiewiczR16,
author = {Marta Rosikiewicz and
Marc Robinson{-}Rechavi},
title = {IQRray, a new method for Affymetrix microarray quality control, and
the homologous organ conservation score, a new benchmark method for
quality control metrics},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2565},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw374},
doi = {10.1093/BIOINFORMATICS/BTW374},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RosikiewiczR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuffaloB16,
author = {Matthew Ruffalo and
Ziv Bar{-}Joseph},
title = {Genome wide predictions of miRNA regulation by transcription factors},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {746--754},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw452},
doi = {10.1093/BIOINFORMATICS/BTW452},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuffaloB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RyuLSL16,
author = {Hyojung Ryu and
Gyutae Lim and
Bong Hyun Sung and
Jinhyuk Lee},
title = {NMRe: a web server for {NMR} protein structure refinement with high-quality
structure validation scores},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {611--613},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv595},
doi = {10.1093/BIOINFORMATICS/BTV595},
timestamp = {Mon, 13 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RyuLSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaaN16,
author = {Pedro A. Saa and
Lars Keld Nielsen},
title = {ll-ACHRB: a scalable algorithm for sampling the feasible solution
space of metabolic networks},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2330--2337},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw132},
doi = {10.1093/BIOINFORMATICS/BTW132},
timestamp = {Tue, 04 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaaN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaaN16a,
author = {Pedro A. Saa and
Lars Keld Nielsen},
title = {Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless
flux optimization of metabolic models},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3807--3814},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw555},
doi = {10.1093/BIOINFORMATICS/BTW555},
timestamp = {Tue, 04 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaaN16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahaR16,
author = {Subrata Saha and
Sanguthevar Rajasekaran},
title = {Authors' response to 'Comment on: {ERGC:} An efficient Referential
Genome Compression Algorithm'},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1118--1119},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv720},
doi = {10.1093/BIOINFORMATICS/BTV720},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahaR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahaR16a,
author = {Subrata Saha and
Sanguthevar Rajasekaran},
title = {{NRGC:} a novel referential genome compression algorithm},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3405--3412},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw505},
doi = {10.1093/BIOINFORMATICS/BTW505},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahaR16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahlinCA16,
author = {Kristoffer Sahlin and
Rayan Chikhi and
Lars Arvestad},
title = {Assembly scaffolding with PE-contaminated mate-pair libraries},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1925--1932},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw064},
doi = {10.1093/BIOINFORMATICS/BTW064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahlinCA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahooSP16,
author = {Sudhakar Sahoo and
Michal P. Switnicki and
Jakob Skou Pedersen},
title = {ProbFold: a probabilistic method for integration of probing data in
{RNA} secondary structure prediction},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2626--2635},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw175},
doi = {10.1093/BIOINFORMATICS/BTW175},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahooSP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sajitz-Hermstein16,
author = {Max Sajitz{-}Hermstein and
Nadine T{\"{o}}pfer and
Sabrina Kleessen and
Alisdair R. Fernie and
Zoran Nikoloski},
title = {iReMet-flux: constraint-based approach for integrating relative metabolite
levels into a stoichiometric metabolic models},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {755--762},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw465},
doi = {10.1093/BIOINFORMATICS/BTW465},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sajitz-Hermstein16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakkaTMBKLGGT16,
author = {Marianna Sakka and
Grigorios Tzortzis and
Michalis D. Mantzaris and
Nick Bekas and
Tahsin F. Kellici and
Aristidis Likas and
Dimitrios Galaris and
Ioannis P. Gerothanassis and
Andreas G. Tzakos},
title = {{PRESS:} PRotEin S-Sulfenylation server},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2710--2712},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw301},
doi = {10.1093/BIOINFORMATICS/BTW301},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SakkaTMBKLGGT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalavertGSABMD16,
author = {Francisco Salavert and
Luz Garcia{-}Alonso and
Rub{\'{e}}n S{\'{a}}nchez and
Roberto Alonso and
Marta Bleda and
Ignacio Medina and
Joaqu{\'{\i}}n Dopazo},
title = {Web-based network analysis and visualization using CellMaps},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3041--3043},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw332},
doi = {10.1093/BIOINFORMATICS/BTW332},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalavertGSABMD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalimBMYJN16,
author = {Jos{\'{e}} Augusto Salim and
Luiz C. Borro and
Ivan Mazoni and
In{\'{a}}cio Yano and
Jos{\'{e}} G. Jardine and
Goran Neshich},
title = {Multiple structure single parameter: analysis of a single protein
nano environment descriptor characterizing a shared loci on structurally
aligned proteins},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1885--1887},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw082},
doi = {10.1093/BIOINFORMATICS/BTW082},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalimBMYJN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sanchez-PulidoP16,
author = {Luis S{\'{a}}nchez{-}Pulido and
Chris P. Ponting},
title = {Vasohibins: new transglutaminase-like cysteine proteases possessing
a non-canonical Cys-His-Ser catalytic triad},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1441--1445},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv761},
doi = {10.1093/BIOINFORMATICS/BTV761},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sanchez-PulidoP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sanchez-Taltavull16,
author = {Daniel S{\'{a}}nchez{-}Taltavull and
Matthew MacLeod and
Theodore J. Perkins},
title = {On cross-conditional and fluctuation correlations in competitive {RNA}
networks},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {790--797},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw472},
doi = {10.1093/BIOINFORMATICS/BTW472},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sanchez-Taltavull16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SanoCRGMMA16,
author = {Luca De Sano and
Giulio Caravagna and
Daniele Ramazzotti and
Alex Graudenzi and
Giancarlo Mauri and
Bud Mishra and
Marco Antoniotti},
title = {{TRONCO:} an {R} package for the inference of cancer progression models
from heterogeneous genomic data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1911--1913},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw035},
doi = {10.1093/BIOINFORMATICS/BTW035},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SanoCRGMMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SantosCTXB16,
author = {Ant{\'{o}}nio M{\'{u}}rias dos Santos and
Maria Pilar Cabezas and
Ana Isabel Tavares and
Raquel Xavier and
Madalena Branco},
title = {tcsBU: a tool to extend {TCS} network layout and visualization},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {627--628},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv636},
doi = {10.1093/BIOINFORMATICS/BTV636},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SantosCTXB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaripellaSF16,
author = {Ganapathi Varma Saripella and
Erik L. L. Sonnhammer and
Kristoffer Forslund},
title = {Benchmarking the next generation of homology inference tools},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2636--2641},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw305},
doi = {10.1093/BIOINFORMATICS/BTW305},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaripellaSF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavojardoFMC16,
author = {Castrense Savojardo and
Piero Fariselli and
Pier Luigi Martelli and
Rita Casadio},
title = {{INPS-MD:} a web server to predict stability of protein variants from
sequence and structure},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2542--2544},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw192},
doi = {10.1093/BIOINFORMATICS/BTW192},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SavojardoFMC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaefferFLK16,
author = {Carly E. Schaeffer and
Nathaniel D. Figueroa and
Xiaolin Liu and
John E. Karro},
title = {phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary
Repeats},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {209--215},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw258},
doi = {10.1093/BIOINFORMATICS/BTW258},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaefferFLK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaferSADDHHK16,
author = {Hendrik Sch{\"{a}}fer and
Tim Sch{\"{a}}fer and
J{\"{o}}rg Ackermann and
Norbert Dichter and
Claudia D{\"{o}}ring and
Sylvia Hartmann and
Martin{-}Leo Hansmann and
Ina Koch},
title = {{CD30} cell graphs of Hodgkin lymphoma are not scale-free - an image
analysis approach},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {122--129},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv542},
doi = {10.1093/BIOINFORMATICS/BTV542},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaferSADDHHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaferSBMK16,
author = {Tim Sch{\"{a}}fer and
Andreas Scheck and
Daniel Brune{\ss} and
Patrick May and
Ina Koch},
title = {The new protein topology graph library web server},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {474--476},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv574},
doi = {10.1093/BIOINFORMATICS/BTV574},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaferSBMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaferV16,
author = {Richard A. Sch{\"{a}}fer and
Bj{\"{o}}rn Vo{\ss}},
title = {VisualGraphX: interactive graph visualization within Galaxy},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3525--3527},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw414},
doi = {10.1093/BIOINFORMATICS/BTW414},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaferV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaffVMLB16,
author = {James C. Schaff and
Dan Vasilescu and
Ion I. Moraru and
Leslie M. Loew and
Michael L. Blinov},
title = {Rule-based modeling with Virtual Cell},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2880--2882},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw353},
doi = {10.1093/BIOINFORMATICS/BTW353},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaffVMLB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScharmWW16,
author = {Martin Scharm and
Olaf Wolkenhauer and
Dagmar Waltemath},
title = {An algorithm to detect and communicate the differences in computational
models describing biological systems},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {563--570},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv484},
doi = {10.1093/BIOINFORMATICS/BTV484},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScharmWW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchenkelbergB16,
author = {Christian D. Schenkelberg and
Christopher Bystroff},
title = {Protein backbone ensemble generation explores the local structural
space of unseen natural homologs},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1454--1461},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw001},
doi = {10.1093/BIOINFORMATICS/BTW001},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchenkelbergB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchisslerLCKABL16,
author = {A. Grant Schissler and
Qike Li and
James L. Chen and
Colleen Kenost and
Ikbel Achour and
Dean Billheimer and
Haiquan Li and
Walter W. Piegorsch and
Yves A. Lussier},
title = {Analysis of aggregated cell-cell statistical distances within pathways
unveils therapeutic-resistance mechanisms in circulating tumor cells},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {80--89},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw248},
doi = {10.1093/BIOINFORMATICS/BTW248},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchisslerLCKABL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidSMSBBKK16,
author = {Florian Schmid and
Matthias Schmid and
Christoph M{\"{u}}ssel and
J. Eric Str{\"{a}}ng and
Christian Buske and
Lars Bullinger and
Johann M. Kraus and
Hans A. Kestler},
title = {GiANT: gene set uncertainty in enrichment analysis},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1891--1894},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw030},
doi = {10.1093/BIOINFORMATICS/BTW030},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidSMSBBKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmiedSPPT16,
author = {Christopher Schmied and
Peter Steinbach and
Tobias Pietzsch and
Stephan Preibisch and
Pavel Tomancak},
title = {An automated workflow for parallel processing of large multiview {SPIM}
recordings},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1112--1114},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv706},
doi = {10.1093/BIOINFORMATICS/BTV706},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmiedSPPT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchofieldCAFSTB16,
author = {E. C. Schofield and
Tim Carver and
Premanand Achuthan and
P. Freire{-}Pritchett and
Mikhail Spivakov and
John A. Todd and
Oliver S. Burren},
title = {CHiCP: a web-based tool for the integrative and interactive visualization
of promoter capture Hi-C datasets},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2511--2513},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw173},
doi = {10.1093/BIOINFORMATICS/BTW173},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchofieldCAFSTB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchubertWBSMK16,
author = {Benjamin Schubert and
Mathias Walzer and
Hans{-}Philipp Brachvogel and
Andr{\'{a}}s Szolek and
Christopher Mohr and
Oliver Kohlbacher},
title = {{FRED} 2: an immunoinformatics framework for Python},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2044--2046},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw113},
doi = {10.1093/BIOINFORMATICS/BTW113},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchubertWBSMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchweppeCB16,
author = {Devin K. Schweppe and
Juan D. Chavez and
James E. Bruce},
title = {XLmap: an {R} package to visualize and score protein structure models
based on sites of protein cross-linking},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {306--308},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv519},
doi = {10.1093/BIOINFORMATICS/BTV519},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchweppeCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchweppeZCNWEB16,
author = {Devin K. Schweppe and
Chunxiang Zheng and
Juan D. Chavez and
Arti T. Navare and
Xia Wu and
Jimmy K. Eng and
James E. Bruce},
title = {XLinkDB 2.0: integrated, large-scale structural analysis of protein
crosslinking data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2716--2718},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw232},
doi = {10.1093/BIOINFORMATICS/BTW232},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchweppeZCNWEB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SedovaJG16,
author = {Mayya Sedova and
Lukasz Jaroszewski and
Adam Godzik},
title = {Protael: protein data visualization library for the web},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {602--604},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv605},
doi = {10.1093/BIOINFORMATICS/BTV605},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SedovaJG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SevimBCM16,
author = {Volkan Sevim and
Ali Bashir and
Chen{-}Shan Chin and
Karen H. Miga},
title = {Alpha-CENTAURI: assessing novel centromeric repeat sequence variation
with long read sequencing},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1921--1924},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw101},
doi = {10.1093/BIOINFORMATICS/BTW101},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SevimBCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeyresDPHG16,
author = {Denis Seyres and
Elodie Darbo and
Laurent Perrin and
Carl Herrmann and
Aitor Gonz{\'{a}}lez},
title = {LedPred: an R/bioconductor package to predict regulatory sequences
using support vector machines},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1091--1093},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv705},
doi = {10.1093/BIOINFORMATICS/BTV705},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeyresDPHG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShajiiYYB16,
author = {Ariya Shajii and
Deniz Y{\"{o}}r{\"{u}}koglu and
Yun William Yu and
Bonnie Berger},
title = {Fast genotyping of known SNPs through approximate \emph{k}-mer matching},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {538--544},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw460},
doi = {10.1093/BIOINFORMATICS/BTW460},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShajiiYYB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShaoLZ16,
author = {Wei Shao and
Mingxia Liu and
Daoqiang Zhang},
title = {Human cell structure-driven model construction for predicting protein
subcellular location from biological images},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {114--121},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv521},
doi = {10.1093/BIOINFORMATICS/BTV521},
timestamp = {Tue, 18 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShaoLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShapiroM16,
author = {Bruce E. Shapiro and
Eric Mjolsness},
title = {Pycellerator: an arrow-based reaction-like modelling language for
biological simulations},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {629--631},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv596},
doi = {10.1093/BIOINFORMATICS/BTV596},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShapiroM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SharpKDM16,
author = {Kevin Sharp and
Warren Kretzschmar and
Olivier Delaneau and
Jonathan Marchini},
title = {Phasing for medical sequencing using rare variants and large haplotype
reference panels},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {1974--1980},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw065},
doi = {10.1093/BIOINFORMATICS/BTW065},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SharpKDM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShavitWL16,
author = {Yoli Shavit and
Barnabas James Walker and
Pietro Li{\`{o}}},
title = {Hierarchical block matrices as efficient representations of chromosome
topologies and their application for 3C data integration},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1121--1129},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv736},
doi = {10.1093/BIOINFORMATICS/BTV736},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShavitWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheetlinPFS16,
author = {Sergey Sheetlin and
Yonil Park and
Martin C. Frith and
John L. Spouge},
title = {{ALP} {\&} {FALP:} {C++} libraries for pairwise local alignment
\emph{E}-values},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {304--305},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv575},
doi = {10.1093/BIOINFORMATICS/BTV575},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SheetlinPFS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheffieldB16,
author = {Nathan C. Sheffield and
Christoph Bock},
title = {{LOLA:} enrichment analysis for genomic region sets and regulatory
elements in {R} and Bioconductor},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {587--589},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv612},
doi = {10.1093/BIOINFORMATICS/BTV612},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SheffieldB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheikhGRF16,
author = {Qamar M. Sheikh and
Derek Gatherer and
Pedro A. Reche and
Darren R. Flower},
title = {Towards the knowledge-based design of universal influenza epitope
ensemble vaccines},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3233--3239},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw399},
doi = {10.1093/BIOINFORMATICS/BTW399},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SheikhGRF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheikhizadehSAR16,
author = {Siavash Sheikhizadeh and
M. Eric Schranz and
Mehmet Akdel and
Dick de Ridder and
Sandra Smit},
title = {PanTools: representation, storage and exploration of pan-genomic data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {487--493},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw455},
doi = {10.1093/BIOINFORMATICS/BTW455},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SheikhizadehSAR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenHJHLZ16,
author = {Qi Shen and
Jiyuan Hu and
Ning Jiang and
Xiaohua Hu and
Zewei Luo and
Hong Zhang},
title = {contamDE: differential expression analysis of RNA-seq data for contaminated
tumor samples},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {705--712},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv657},
doi = {10.1093/BIOINFORMATICS/BTV657},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenHJHLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShimL16,
author = {Jung Eun Shim and
Insuk Lee},
title = {Weighted mutual information analysis substantially improves domain-based
functional network models},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2824--2830},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw320},
doi = {10.1093/BIOINFORMATICS/BTW320},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShimL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShimizuNR16,
author = {Kana Shimizu and
Koji Nuida and
Gunnar R{\"{a}}tsch},
title = {Efficient privacy-preserving string search and an application in genomics},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1652--1661},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw050},
doi = {10.1093/BIOINFORMATICS/BTW050},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShimizuNR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShomoronyKCT16,
author = {Ilan Shomorony and
Samuel H. Kim and
Thomas A. Courtade and
David N. C. Tse},
title = {Information-optimal genome assembly via sparse read-overlap graphs},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {494--502},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw450},
doi = {10.1093/BIOINFORMATICS/BTW450},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShomoronyKCT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilvaGDE16,
author = {Genivaldo Gueiros Z. Silva and
Kevin T. Green and
Bas E. Dutilh and
Robert A. Edwards},
title = {{SUPER-FOCUS:} a tool for agile functional analysis of shotgun metagenomic
data},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {354--361},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv584},
doi = {10.1093/BIOINFORMATICS/BTV584},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SilvaGDE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimmonsB16,
author = {Sean Simmons and
Bonnie Berger},
title = {Realizing privacy preserving genome-wide association studies},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1293--1300},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw009},
doi = {10.1093/BIOINFORMATICS/BTW009},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimmonsB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SinghLRQ16,
author = {Ritambhara Singh and
Jack Lanchantin and
Gabriel Robins and
Yanjun Qi},
title = {DeepChrome: deep-learning for predicting gene expression from histone
modifications},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {639--648},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw427},
doi = {10.1093/BIOINFORMATICS/BTW427},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SinghLRQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiskaBK16,
author = {Charlotte Siska and
Russell Bowler and
Katerina J. Kechris},
title = {The discordant method: a novel approach for differential correlation},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {690--696},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv633},
doi = {10.1093/BIOINFORMATICS/BTV633},
timestamp = {Sun, 18 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SiskaBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SivakumarGPKB16,
author = {Tadi Venkata Sivakumar and
Varun Giri and
Jin Hwan Park and
Tae Yong Kim and
Anirban Bhaduri},
title = {ReactPRED: a tool to predict and analyze biochemical reactions},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3522--3524},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw491},
doi = {10.1093/BIOINFORMATICS/BTW491},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SivakumarGPKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkidmoreWLCKGG16,
author = {Zachary L. Skidmore and
Alex H. Wagner and
Robert Lesurf and
Katie M. Campbell and
Jason Kunisaki and
Obi L. Griffith and
Malachi Griffith},
title = {GenVisR: Genomic Visualizations in {R}},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3012--3014},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw325},
doi = {10.1093/BIOINFORMATICS/BTW325},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkidmoreWLCKGG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkjaervenJYG16,
author = {Lars Skj{\ae}rven and
Shashank Jariwala and
Xin{-}Qiu Yao and
Barry J. Grant},
title = {Online interactive analysis of protein structure ensembles with Bio3D-web},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3510--3512},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw482},
doi = {10.1093/BIOINFORMATICS/BTW482},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkjaervenJYG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmirnovSHWSOFSG16,
author = {Petr Smirnov and
Zhaleh Safikhani and
Nehme Hachem and
Dong Wang and
Adrian She and
Catharina Olsen and
Mark Freeman and
Heather Marie Selby and
Deena M. A. Gendoo and
Patrick Grossmann and
Andrew H. Beck and
Hugo J. W. L. Aerts and
Mathieu Lupien and
Anna Goldenberg and
Benjamin Haibe{-}Kains},
title = {PharmacoGx: an {R} package for analysis of large pharmacogenomic datasets},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1244--1246},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv723},
doi = {10.1093/BIOINFORMATICS/BTV723},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmirnovSHWSOFSG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithSMK16,
author = {Maureen R. Smith and
Redmond P. Smyth and
Roland Marquet and
Max von Kleist},
title = {MIMEAnTo: profiling functional {RNA} in mutational interference mapping
experiments},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3369--3370},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw479},
doi = {10.1093/BIOINFORMATICS/BTW479},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithSMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithYPPJD16,
author = {Kyle S. Smith and
Vinod Kumar Yadav and
Shanshan Pei and
Daniel A. Pollyea and
Craig T. Jordan and
Subhajyoti De},
title = {SomVarIUS: somatic variant identification from unpaired tissue samples},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {808--813},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv685},
doi = {10.1093/BIOINFORMATICS/BTV685},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithYPPJD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SolomonEAUR16,
author = {Oz Solomon and
Eran Eyal and
Ninette Amariglio and
Ron Unger and
Gidi Rechavi},
title = {e23D: database and visualization of A-to-I {RNA} editing sites mapped
to 3D protein structures},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2213--2215},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw204},
doi = {10.1093/BIOINFORMATICS/BTW204},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SolomonEAUR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SomervuoKPNO16,
author = {Panu Somervuo and
Sonja Koskela and
Juho Pennanen and
R. Henrik Nilsson and
Otso Ovaskainen},
title = {Unbiased probabilistic taxonomic classification for {DNA} barcoding},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2920--2927},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw346},
doi = {10.1093/BIOINFORMATICS/BTW346},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SomervuoKPNO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoulDHBS16,
author = {Jamie Soul and
Sara L. Dunn and
Tim E. Hardingham and
Ray P. Boot{-}Handford and
Jean{-}Marc Schwartz},
title = {PhenomeScape: a cytoscape app to identify differentially regulated
sub-networks using known disease associations},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3847--3849},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw545},
doi = {10.1093/BIOINFORMATICS/BTW545},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoulDHBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SovicKSS16,
author = {Ivan Sovic and
Kresimir Krizanovic and
Karolj Skala and
Mile Sikic},
title = {Evaluation of hybrid and non-hybrid methods for \emph{de novo} assembly
of nanopore reads},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2582--2589},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw237},
doi = {10.1093/BIOINFORMATICS/BTW237},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SovicKSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SridharFG16,
author = {Dhanya Sridhar and
Shobeir Fakhraei and
Lise Getoor},
title = {A probabilistic approach for collective similarity-based drug-drug
interaction prediction},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3175--3182},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw342},
doi = {10.1093/BIOINFORMATICS/BTW342},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SridharFG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SrivastavaSGP16,
author = {Avi Srivastava and
Hirak Sarkar and
Nitish Gupta and
Rob Patro},
title = {RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads
to transcriptomes},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {192--200},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw277},
doi = {10.1093/BIOINFORMATICS/BTW277},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SrivastavaSGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StaabM16,
author = {Paul R. Staab and
Dirk Metzler},
title = {Coala: an {R} framework for coalescent simulation},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1903--1904},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw098},
doi = {10.1093/BIOINFORMATICS/BTW098},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StaabM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StaleyBKESSPFBD16,
author = {James R. Staley and
James A. Blackshaw and
Mihir A. Kamat and
Steve Ellis and
Praveen Surendran and
Benjamin B. Sun and
Dirk S. Paul and
Daniel Freitag and
Stephen Burgess and
John Danesh and
Robin Young and
Adam S. Butterworth},
title = {PhenoScanner: a database of human genotype-phenotype associations},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3207--3209},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw373},
doi = {10.1093/BIOINFORMATICS/BTW373},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StaleyBKESSPFBD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StaplesELWNB16,
author = {Jeffrey Staples and
Lynette Ekunwe and
Ethan M. Lange and
James G. Wilson and
Deborah A. Nickerson and
Jennifer E. Below},
title = {{PRIMUS:} improving pedigree reconstruction using mitochondrial and
{Y} haplotypes},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {596--598},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv618},
doi = {10.1093/BIOINFORMATICS/BTV618},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StaplesELWNB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteiertTK16,
author = {Bernhard Steiert and
Jens Timmer and
Clemens Kreutz},
title = {\emph{L}\({}_{\mbox{1}}\) regularization facilitates detection of
cell type-specific parameters in dynamical systems},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {718--726},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw461},
doi = {10.1093/BIOINFORMATICS/BTW461},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteiertTK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteinruckenJS16,
author = {Matthias Steinr{\"{u}}cken and
Ethan M. Jewett and
Yun S. Song},
title = {SpectralTDF: transition densities of diffusion processes with time-varying
selection parameters, mutation rates and effective population sizes},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {795--797},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv627},
doi = {10.1093/BIOINFORMATICS/BTV627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteinruckenJS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StockelKTSBLGKG16,
author = {Daniel St{\"{o}}ckel and
Tim Kehl and
Patrick Trampert and
Lara Schneider and
Christina Backes and
Nicole Ludwig and
Andreas Gerasch and
Michael Kaufmann and
Manfred Gessler and
Norbert M. Graf and
Eckart Meese and
Andreas Keller and
Hans{-}Peter Lenhof},
title = {Multi-omics enrichment analysis using the GeneTrail2 web service},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1502--1508},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv770},
doi = {10.1093/BIOINFORMATICS/BTV770},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StockelKTSBLGKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StockerKR16,
author = {Bianca K. St{\"{o}}cker and
Johannes K{\"{o}}ster and
Sven Rahmann},
title = {SimLoRD: Simulation of Long Read Data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2704--2706},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw286},
doi = {10.1093/BIOINFORMATICS/BTW286},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StockerKR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StokowyGFHLSGHH16,
author = {Tomasz Stokowy and
Mateusz Garbulowski and
Torunn Fiskerstrand and
Rita Holdhus and
Kornel Labun and
Pawel Sztromwasser and
Christian Gilissen and
Alexander Hoischen and
Gunnar Houge and
Kjell Petersen and
Inge Jonassen and
Vidar M. Steen},
title = {RareVariantVis: new tool for visualization of causative variants in
rare monogenic disorders using whole genome sequencing data},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3018--3020},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw359},
doi = {10.1093/BIOINFORMATICS/BTW359},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StokowyGFHLSGHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StracquadanioYB16,
author = {Giovanni Stracquadanio and
Kun Yang and
Jef D. Boeke and
Joel S. Bader},
title = {BioPartsDB: a synthetic biology workflow web-application for education
and research},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3519--3521},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw394},
doi = {10.1093/BIOINFORMATICS/BTW394},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StracquadanioYB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StrazarZZUC16,
author = {Martin Strazar and
Marinka Zitnik and
Blaz Zupan and
Jernej Ule and
Tomaz Curk},
title = {Orthogonal matrix factorization enables integrative analysis of multiple
{RNA} binding proteins},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1527--1535},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw003},
doi = {10.1093/BIOINFORMATICS/BTW003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StrazarZZUC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StupnikovTSMSGD16,
author = {Alexey Stupnikov and
Shailesh Tripathi and
Ricardo de Matos Simoes and
Darragh G. McArt and
Manuel Salto{-}Tellez and
Galina V. Glazko and
Matthias Dehmer and
Frank Emmert{-}Streib},
title = {samExploreR: exploring reproducibility and robustness of RNA-seq results
based on {SAM} files},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3345--3347},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw475},
doi = {10.1093/BIOINFORMATICS/BTW475},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StupnikovTSMSGD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SukumarZEM16,
author = {Shravan Sukumar and
Xiaolei Zhu and
Spencer S. Ericksen and
Julie C. Mitchell},
title = {{DBSI} server: {DNA} binding site identifier},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2853--2855},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw315},
doi = {10.1093/BIOINFORMATICS/BTW315},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SukumarZEM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SullivanBTP16,
author = {Mitchell J. Sullivan and
Nathan L. Bachmann and
Peter Timms and
Adam Polkinghorne},
title = {HapFlow: visualizing haplotypes in sequencing data},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {441--443},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv551},
doi = {10.1093/BIOINFORMATICS/BTV551},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SullivanBTP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SummerKRBWH16,
author = {Georg Summer and
Thomas Kelder and
Marijana Radonjic and
Marc van Bilsen and
Suzan Wopereis and
Stephane Heymans},
title = {The Network Library: a framework to rapidly integrate network biology
resources},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {473--478},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw436},
doi = {10.1093/BIOINFORMATICS/BTW436},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SummerKRBWH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunJTB16,
author = {Jiangwen Sun and
Zongliang Jiang and
Xiuchun Tian and
Jinbo Bi},
title = {A cross-species bi-clustering approach to identifying conserved co-regulated
genes},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {137--146},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw278},
doi = {10.1093/BIOINFORMATICS/BTW278},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunJTB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SundfeldHMG16,
author = {Daniel Sundfeld and
Jakob Hull Havgaard and
Alba Cristina Magalhaes Alves de Melo and
Jan Gorodkin},
title = {Foldalign 2.5: multithreaded implementation for pairwise structural
{RNA} alignment},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1238--1240},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv748},
doi = {10.1093/BIOINFORMATICS/BTV748},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SundfeldHMG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SungWYC16,
author = {Pei{-}Yuan Sung and
Yi{-}Ting Wang and
Ya{-}Wen Yu and
Ren{-}Hua Chung},
title = {An efficient gene-gene interaction test for genome-wide association
studies in trio families},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1848--1855},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw077},
doi = {10.1093/BIOINFORMATICS/BTW077},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SungWYC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuzukiKN16,
author = {Hirofumi Suzuki and
Takeshi Kawabata and
Haruki Nakamura},
title = {Omokage search: shape similarity search service for biomolecular structures
in both the {PDB} and {EMDB}},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {619--620},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv614},
doi = {10.1093/BIOINFORMATICS/BTV614},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuzukiKN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuzukiKTTTQIYYT16,
author = {Yuta Suzuki and
Jonas Korlach and
Stephen W. Turner and
Tatsuya Tsukahara and
Junko Taniguchi and
Wei Qu and
Kazuki Ichikawa and
Jun Yoshimura and
Hideaki Yurino and
Yuji Takahashi and
Jun Mitsui and
Hiroyuki Ishiura and
Shoji Tsuji and
Hiroyuki Takeda and
Shinichi Morishita},
title = {AgIn: measuring the landscape of CpG methylation of individual repetitive
elements},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2911--2919},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw360},
doi = {10.1093/BIOINFORMATICS/BTW360},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuzukiKTTTQIYYT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwatGW16,
author = {Maciej J. Swat and
Pierre Grenon and
Sarala M. Wimalaratne},
title = {ProbOnto: ontology and knowledge base of probability distributions},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2719--2721},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw170},
doi = {10.1093/BIOINFORMATICS/BTW170},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwatGW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwitnickiJMSP16,
author = {Michal P. Switnicki and
Malene Juul and
Tobias Madsen and
Karina D. S{\o}rensen and
Jakob Skou Pedersen},
title = {{PINCAGE:} probabilistic integration of cancer genomics data for perturbed
gene identification and sample classification},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1353--1365},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv758},
doi = {10.1093/BIOINFORMATICS/BTV758},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwitnickiJMSP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SzczurekB16,
author = {Ewa Szczurek and
Niko Beerenwinkel},
title = {Linear effects models of signaling pathways from combinatorial perturbation
data},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {297--305},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw268},
doi = {10.1093/BIOINFORMATICS/BTW268},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SzczurekB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TabeiYK16,
author = {Yasuo Tabei and
Yoshihiro Yamanishi and
Masaaki Kotera},
title = {Simultaneous prediction of enzyme orthologs from chemical transformation
patterns for \emph{de novo} metabolic pathway reconstruction},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {278--287},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw260},
doi = {10.1093/BIOINFORMATICS/BTW260},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TabeiYK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TadakaK16,
author = {Shu Tadaka and
Kengo Kinoshita},
title = {NCMine: Core-peripheral based functional module detection using near-clique
mining},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3454--3460},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw488},
doi = {10.1093/BIOINFORMATICS/BTW488},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TadakaK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanL16,
author = {Ge Tan and
Boris Lenhard},
title = {TFBSTools: an R/bioconductor package for transcription factor binding
site analysis},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1555--1556},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw024},
doi = {10.1093/BIOINFORMATICS/BTW024},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangCA16,
author = {Zheng{-}Zheng Tang and
Guanhua Chen and
Alexander V. Alekseyenko},
title = {{PERMANOVA-S:} association test for microbial community composition
that accommodates confounders and multiple distances},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2618--2625},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw311},
doi = {10.1093/BIOINFORMATICS/BTW311},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangCA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangT16,
author = {Haiming Tang and
Paul D. Thomas},
title = {{PANTHER-PSEP:} predicting disease-causing genetic variants using
position-specific evolutionary preservation},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2230--2232},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw222},
doi = {10.1093/BIOINFORMATICS/BTW222},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanyalcinAGSLJ16,
author = {Ibrahim Tanyalcin and
Carla Al Assaf and
Alexander Gheldof and
Katrien Stouffs and
Willy Lissens and
Anna C. Jansen},
title = {{I-PV:} a {CIRCOS} module for interactive protein sequence visualization},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {447--449},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv579},
doi = {10.1093/BIOINFORMATICS/BTV579},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanyalcinAGSLJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TatwawadiHOW16,
author = {Kedar Tatwawadi and
Mikel Hernaez and
Idoia Ochoa and
Tsachy Weissman},
title = {{GTRAC:} fast retrieval from compressed collections of genomic variants},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {479--486},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw437},
doi = {10.1093/BIOINFORMATICS/BTW437},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TatwawadiHOW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeggeSM16,
author = {Allison N. Tegge and
Nicholas Sharp and
T. M. Murali},
title = {Xtalk: a path-based approach for identifying crosstalk between signaling
pathways},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {242--251},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv549},
doi = {10.1093/BIOINFORMATICS/BTV549},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeggeSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TemuMRC16,
author = {Tikira Temu and
Matthias Mann and
Markus R{\"{a}}schle and
J{\"{u}}rgen Cox},
title = {Homology-driven assembly of NOn-redundant protEin sequence sets (NOmESS)
for mass spectrometry},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1417--1419},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv756},
doi = {10.1093/BIOINFORMATICS/BTV756},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TemuMRC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TengHWT16,
author = {Li Teng and
Bing He and
Jiahui Wang and
Kai Tan},
title = {4DGenome: a comprehensive database of chromatin interactions},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2727},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw375},
doi = {10.1093/BIOINFORMATICS/BTW375},
timestamp = {Wed, 09 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TengHWT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeradaYTS16,
author = {Aika Terada and
Ryo Yamada and
Koji Tsuda and
Jun Sese},
title = {{LAMPLINK:} detection of statistically significant {SNP} combinations
from {GWAS} data},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3513--3515},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw418},
doi = {10.1093/BIOINFORMATICS/BTW418},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeradaYTS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeraiKA16,
author = {Goro Terai and
Satoshi Kamegai and
Kiyoshi Asai},
title = {CDSfold: an algorithm for designing a protein-coding sequence with
the most stable secondary structure},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {828--834},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv678},
doi = {10.1093/BIOINFORMATICS/BTV678},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeraiKA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThabenW16,
author = {Paul Florian Thaben and
P{\aa}l O. Westermark},
title = {Differential rhythmicity: detecting altered rhythmicity in biological
data},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2800--2808},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw309},
doi = {10.1093/BIOINFORMATICS/BTW309},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThabenW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThomasCCSCHP16,
author = {Brandon R. Thomas and
Lily A. Chylek and
Joshua Colvin and
Suman Sirimulla and
Andrew H. A. Clayton and
William S. Hlavacek and
Richard G. Posner},
title = {BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed
computing environments},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {798--800},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv655},
doi = {10.1093/BIOINFORMATICS/BTV655},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThomasCCSCHP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThomasRHLL16,
author = {Philippe Thomas and
Tim Rockt{\"{a}}schel and
J{\"{o}}rg Hakenberg and
Yvonne Lichtblau and
Ulf Leser},
title = {{SETH} detects and normalizes genetic variants in text},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2883--2885},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw234},
doi = {10.1093/BIOINFORMATICS/BTW234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThomasRHLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TitusHJC16,
author = {Alexander J. Titus and
Eugene Andres Houseman and
Kevin C. Johnson and
Brock C. Christensen},
title = {methyLiftover: cross-platform {DNA} methylation data integration},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2517--2519},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw180},
doi = {10.1093/BIOINFORMATICS/BTW180},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TitusHJC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TobalinaPP16,
author = {Luis Tobalina and
Jon Pey and
Francisco J. Planes},
title = {Direct calculation of minimal cut sets involving a specific reaction
knock-out},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2001--2007},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw072},
doi = {10.1093/BIOINFORMATICS/BTW072},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TobalinaPP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TohsatoHKO16,
author = {Yukako Tohsato and
Kenneth H. L. Ho and
Koji Kyoda and
Shuichi Onami},
title = {{SSBD:} a database of quantitative data of spatiotemporal dynamics
of biological phenomena},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3471--3479},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw417},
doi = {10.1093/BIOINFORMATICS/BTW417},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TohsatoHKO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TopaH16,
author = {Hande Topa and
Antti Honkela},
title = {Analysis of differential splicing suggests different modes of short-term
splicing regulation},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {147--155},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw283},
doi = {10.1093/BIOINFORMATICS/BTW283},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TopaH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TouloumisMT16,
author = {Anestis Touloumis and
John C. Marioni and
Simon Tavar{\'{e}}},
title = {{HDTD:} analyzing multi-tissue gene expression data},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2193--2195},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw224},
doi = {10.1093/BIOINFORMATICS/BTW224},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TouloumisMT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrappeMR16,
author = {Kathrin Trappe and
Tobias Marschall and
Bernhard Y. Renard},
title = {Detecting horizontal gene transfer by mapping sequencing reads across
species boundaries},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {595--604},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw423},
doi = {10.1093/BIOINFORMATICS/BTW423},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrappeMR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TraynardFFT16,
author = {Pauline Traynard and
Adrien Faur{\'{e}} and
Fran{\c{c}}ois Fages and
Denis Thieffry},
title = {Logical model specification aided by model-checking techniques: application
to the mammalian cell cycle regulation},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {772--780},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw457},
doi = {10.1093/BIOINFORMATICS/BTW457},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TraynardFFT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrieuC16,
author = {Tuan Trieu and
Jianlin Cheng},
title = {{MOGEN:} a tool for reconstructing 3D models of genomes from chromosomal
conformation capturing data},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1286--1292},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv754},
doi = {10.1093/BIOINFORMATICS/BTV754},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrieuC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrinhK16,
author = {Hung{-}Cuong Trinh and
Yung{-}Keun Kwon},
title = {Edge-based sensitivity analysis of signaling networks by using Boolean
dynamics},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {763--771},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw464},
doi = {10.1093/BIOINFORMATICS/BTW464},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrinhK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsirigosEB16,
author = {Konstantinos D. Tsirigos and
Arne Elofsson and
Pantelis G. Bagos},
title = {{PRED-TMBB2:} improved topology prediction and detection of beta-barrel
outer membrane proteins},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {665--671},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw444},
doi = {10.1093/BIOINFORMATICS/BTW444},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsirigosEB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsuchiyaAASHSS16,
author = {Mariko Tsuchiya and
Kojiro Amano and
Masaya Abe and
Misato Seki and
Sumitaka Hase and
Kengo Sato and
Yasubumi Sakakibara},
title = {{SHARAKU:} an algorithm for aligning and clustering read mapping profiles
of deep sequencing in non-coding {RNA} processing},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {369--377},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw273},
doi = {10.1093/BIOINFORMATICS/BTW273},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsuchiyaAASHSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TuZLH16,
author = {Weizhong Tu and
Haoran Zhang and
Juan Liu and
Qian{-}Nan Hu},
title = {BioSynther: a customized biosynthetic potential explorer},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {472--473},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv599},
doi = {10.1093/BIOINFORMATICS/BTV599},
timestamp = {Wed, 04 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TuZLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TurewiczAMME16,
author = {Michael Turewicz and
Maike Ahrens and
Caroline May and
Katrin Marcus and
Martin Eisenacher},
title = {{PAA:} an R/bioconductor package for biomarker discovery with protein
microarrays},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1577--1579},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw037},
doi = {10.1093/BIOINFORMATICS/BTW037},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TurewiczAMME16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ud-DeanG16,
author = {S. M. Minhaz Ud{-}Dean and
Rudiyanto Gunawan},
title = {Optimal design of gene knockout experiments for gene regulatory network
inference},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {875--883},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv672},
doi = {10.1093/BIOINFORMATICS/BTV672},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ud-DeanG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UlyantsevKDTA16,
author = {Vladimir Ulyantsev and
Sergey Kazakov and
Veronika B. Dubinkina and
Alexander V. Tyakht and
Dmitry G. Alexeev},
title = {MetaFast: fast reference-free graph-based comparison of shotgun metagenomic
data},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2760--2767},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw312},
doi = {10.1093/BIOINFORMATICS/BTW312},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UlyantsevKDTA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UtroBCG16,
author = {Filippo Utro and
Valeria Di Benedetto and
Davide F. V. Corona and
Raffaele Giancarlo},
title = {The intrinsic combinatorial organization and information theoretic
content of a sequence are correlated to the {DNA} encoded nucleosome
organization of eukaryotic genomes},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {835--842},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv679},
doi = {10.1093/BIOINFORMATICS/BTV679},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UtroBCG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UtsunomiyaMUAG16,
author = {Yuri Tani Utsunomiya and
Marco Milanesi and
Adam T. H. Utsunomiya and
Paolo Ajmone{-}Marsan and
Jos{\'{e}} Fernando Garcia},
title = {GHap: an {R} package for genome-wide haplotyping},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2861--2862},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw356},
doi = {10.1093/BIOINFORMATICS/BTW356},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UtsunomiyaMUAG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UzielaW16,
author = {Karolis Uziela and
Bj{\"{o}}rn Wallner},
title = {ProQ2: estimation of model accuracy implemented in Rosetta},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1411--1413},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv767},
doi = {10.1093/BIOINFORMATICS/BTV767},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UzielaW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VaezMPSHAN16,
author = {Ahmad Vaez and
Peter J. van der Most and
Bram P. Prins and
Harold Snieder and
Edwin R. van den Heuvel and
Behrooz Z. Alizadeh and
Ilja M. Nolte},
title = {lodGWAS: a software package for genome-wide association analysis of
biomarkers with a limit of detection},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1552--1554},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw021},
doi = {10.1093/BIOINFORMATICS/BTW021},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VaezMPSHAN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ValasatavaRBA16,
author = {Yana Valasatava and
Antonio Rosato and
Lucia Banci and
Claudia Andreini},
title = {MetalPredator: a web server to predict iron-sulfur cluster binding
proteomes},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2850--2852},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw238},
doi = {10.1093/BIOINFORMATICS/BTW238},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ValasatavaRBA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ValentiniAFLMR16,
author = {Giorgio Valentini and
Giuliano Armano and
Marco Frasca and
Jianyi Lin and
Marco Mesiti and
Matteo Re},
title = {\emph{RANKS}: a flexible tool for node label ranking and classification
in biological networks},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2872--2874},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw235},
doi = {10.1093/BIOINFORMATICS/BTW235},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ValentiniAFLMR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VanLFMEVRMN16,
author = {Thanh Le Van and
Matthijs van Leeuwen and
Ana Carolina Fierro and
Dries De Maeyer and
Jimmy Van den Eynden and
Lieven P. C. Verbeke and
Luc De Raedt and
Kathleen Marchal and
Siegfried Nijssen},
title = {Simultaneous discovery of cancer subtypes and subtype features by
molecular data integration},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {445--454},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw434},
doi = {10.1093/BIOINFORMATICS/BTW434},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VanLFMEVRMN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VanderkamAHPH16,
author = {Dan Vanderkam and
B{\"{u}}lent Arman Aksoy and
Isaac Hodes and
Jaclyn Perrone and
Jeff Hammerbacher},
title = {pileup.js: a JavaScript library for interactive and in-browser visualization
of genomic data},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2378--2379},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw167},
doi = {10.1093/BIOINFORMATICS/BTW167},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VanderkamAHPH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VargaDT16,
author = {Julia Varga and
L{\'{a}}szl{\'{o}} Dobson and
G{\'{a}}bor E. Tusn{\'{a}}dy},
title = {{TOPDOM:} database of conservatively located domains and motifs in
proteins},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2725--2726},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw193},
doi = {10.1093/BIOINFORMATICS/BTW193},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VargaDT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VargasAPMLJJ16,
author = {Andrea Vargas and
Marc Angeli and
Chiara Pastrello and
Rosanne McQuaid and
Han Li and
Andrea Jurisicova and
Igor Jurisica},
title = {Robust quantitative scratch assay},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1439--1440},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv746},
doi = {10.1093/BIOINFORMATICS/BTV746},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VargasAPMLJJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VaserPS16,
author = {Robert Vaser and
Dario Pavlovic and
Mile Sikic},
title = {{SWORD} - a highly efficient protein database search},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {680--684},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw445},
doi = {10.1093/BIOINFORMATICS/BTW445},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VaserPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VecchyoML16,
author = {Diego Ortega{-}Del Vecchyo and
Clare D. Marsden and
Kirk E. Lohmueller},
title = {PReFerSim: fast simulation of demography and selection under the Poisson
Random Field model},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3516--3518},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw478},
doi = {10.1093/BIOINFORMATICS/BTW478},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VecchyoML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VeenemanSDCN16,
author = {Brendan A. Veeneman and
Sudhanshu Shukla and
Saravana M. Dhanasekaran and
Arul M. Chinnaiyan and
Alexey I. Nesvizhskii},
title = {Two-pass alignment improves novel splice junction quantification},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {43--49},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv642},
doi = {10.1093/BIOINFORMATICS/BTV642},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VeenemanSDCN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VelickovicL16,
author = {Petar Velickovic and
Pietro Li{\`{o}}},
title = {Muxstep: an open-source {C} ++ multiplex {HMM} library for making
inferences on multiple data types},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2562--2564},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw196},
doi = {10.1093/BIOINFORMATICS/BTW196},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VelickovicL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VerleyenBG16,
author = {Wim Verleyen and
Sara Ballouz and
Jesse A. Gillis},
title = {Positive and negative forms of replicability in gene network analysis},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1065--1073},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv734},
doi = {10.1093/BIOINFORMATICS/BTV734},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VerleyenBG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VeroliFWMBRJ16,
author = {Giovanni Y. Di Veroli and
Chiara Fornari and
Dennis Wang and
S{\'{e}}verine Mollard and
Jo L. Bramhall and
Frances M. Richards and
Duncan I. Jodrell},
title = {Combenefit: an interactive platform for the analysis and visualization
of drug combinations},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2866--2868},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw230},
doi = {10.1093/BIOINFORMATICS/BTW230},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VeroliFWMBRJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VervierMTVV16,
author = {Kevin Vervier and
Pierre Mah{\'{e}} and
Maud Tournoud and
Jean{-}Baptiste Veyrieras and
Jean{-}Philippe Vert},
title = {Large-scale machine learning for metagenomics sequence classification},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1023--1032},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv683},
doi = {10.1093/BIOINFORMATICS/BTV683},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VervierMTVV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ViartDKONNCMF16,
author = {Benjamin Thomas Viart and
C. Dias{-}Lopes and
Edgar Ernesto Gonzalez Kozlova and
C. F. B. Oliveira and
C. Nguyen and
G. Neshich and
Carlos Ch{\'{a}}vez{-}Ol{\'{o}}rtegui and
F. Molina and
Liza Figueredo Felicori},
title = {EPI-peptide designer: a tool for designing peptide ligand libraries
based on epitope-paratope interactions},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1462--1470},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw014},
doi = {10.1093/BIOINFORMATICS/BTW014},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ViartDKONNCMF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VidulinSS16,
author = {Vedrana Vidulin and
Tomislav Smuc and
Fran Supek},
title = {Extensive complementarity between gene function prediction methods},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3645--3653},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw532},
doi = {10.1093/BIOINFORMATICS/BTW532},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VidulinSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VieiraAN16,
author = {Filipe G. Vieira and
Anders Albrechtsen and
Rasmus Nielsen},
title = {Estimating {IBD} tracts from low coverage {NGS} data},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2096--2102},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw212},
doi = {10.1093/BIOINFORMATICS/BTW212},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VieiraAN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VigelandGS16,
author = {Magnus D. Vigeland and
Kristina S. Gj{\o}tterud and
Kaja K. Selmer},
title = {{FILTUS:} a desktop {GUI} for fast and efficient detection of disease-causing
variants, including a novel autozygosity detector},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1592--1594},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw046},
doi = {10.1093/BIOINFORMATICS/BTW046},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VigelandGS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VoitenkoDFKK16,
author = {Olga S. Voitenko and
Andi Dhroso and
Anna Feldmann and
Dmitry Korkin and
Olga V. Kalinina},
title = {Patterns of amino acid conservation in human and animal immunodeficiency
viruses},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {685--692},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw441},
doi = {10.1093/BIOINFORMATICS/BTW441},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VoitenkoDFKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VrahatisBTB16,
author = {Aristidis G. Vrahatis and
Panos Balomenos and
Athanasios K. Tsakalidis and
Anastasios Bezerianos},
title = {DEsubs: an {R} package for flexible identification of differentially
expressed subpathways using RNA-seq experiments},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3844--3846},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw544},
doi = {10.1093/BIOINFORMATICS/BTW544},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VrahatisBTB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VrahatisDBTB16,
author = {Aristidis G. Vrahatis and
Konstantina Dimitrakopoulou and
Panos Balomenos and
Athanasios K. Tsakalidis and
Anastasios Bezerianos},
title = {\emph{CHRONOS}: a time-varying method for microRNA-mediated subpathway
enrichment analysis},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {884--892},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv673},
doi = {10.1093/BIOINFORMATICS/BTV673},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VrahatisDBTB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VuWKNWRP16,
author = {Trung{-}Nghia Vu and
Quin F. Wills and
Krishna R. Kalari and
Nifang Niu and
Liewei Wang and
Mattias Rantalainen and
Yudi Pawitan},
title = {Beta-Poisson model for single-cell RNA-seq data analyses},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2128--2135},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw202},
doi = {10.1093/BIOINFORMATICS/BTW202},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VuWKNWRP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VyatkinaWDVLTLP16,
author = {Kira Vyatkina and
Si Wu and
Lennard J. Dekker and
Martijn M. VanDuijn and
Xiaowen Liu and
Nikola Tolic and
Theo M. Luider and
Ljiljana Pasa{-}Tolic and
Pavel A. Pevzner},
title = {Top-down analysis of protein samples by \emph{de novo} sequencing
techniques},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2753--2759},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw307},
doi = {10.1093/BIOINFORMATICS/BTW307},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VyatkinaWDVLTLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaesePWWGP16,
author = {Jamie Waese and
Asher Pasha and
Tingting Wang and
Anna van Weringh and
David S. Guttman and
Nicholas J. Provart},
title = {Gene Slider: sequence logo interactive data-visualization for education
and research},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3670--3672},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw525},
doi = {10.1093/BIOINFORMATICS/BTW525},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaesePWWGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WagnerPWBB16,
author = {Justin Wagner and
Joseph N. Paulson and
Xiao Wang and
Bobby Bhattacharjee and
H{\'{e}}ctor Corrada Bravo},
title = {Privacy-preserving microbiome analysis using secure computation},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1873--1879},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw073},
doi = {10.1093/BIOINFORMATICS/BTW073},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WagnerPWBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaitheCSE16,
author = {Dominic Waithe and
Mathias P. Clausen and
Erdinc Sezgin and
Christian Eggeling},
title = {FoCuS-point: software for {STED} fluorescence correlation and time-gated
single photon counting},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {958--960},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv687},
doi = {10.1093/BIOINFORMATICS/BTV687},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaitheCSE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalaZMB16,
author = {Jeremiah A. Wala and
Cheng{-}Zhong Zhang and
Matthew Meyerson and
Rameen Beroukhim},
title = {VariantBam: filtering and profiling of next-generational sequencing
data using region-specific rules},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2029--2031},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw111},
doi = {10.1093/BIOINFORMATICS/BTW111},
timestamp = {Tue, 18 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalaZMB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalindaMNSS16,
author = {Erik Walinda and
Daichi Morimoto and
Mayu Nishizawa and
Masahiro Shirakawa and
Kenji Sugase},
title = {Efficient identification and analysis of chemical exchange in biomolecules
by \emph{R}\({}_{\mbox{1{\(\rho\)}}}\) relaxation dispersion with
\emph{Amaterasu}},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2539--2541},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw188},
doi = {10.1093/BIOINFORMATICS/BTW188},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalindaMNSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WanAL16,
author = {Ying{-}Wooi Wan and
Genevera I. Allen and
Zhandong Liu},
title = {{TCGA2STAT:} simple {TCGA} data access for integrated statistical
analysis in {R}},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {952--954},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv677},
doi = {10.1093/BIOINFORMATICS/BTV677},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WanAL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wang16,
author = {Xiaowei Wang},
title = {Improving microRNA target prediction by modeling with unambiguously
identified microRNA-target pairs from CLIP-ligation studies},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1316--1322},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw002},
doi = {10.1093/BIOINFORMATICS/BTW002},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wang16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCDW16,
author = {Yong{-}Cui Wang and
Shi{-}Long Chen and
Nai{-}Yang Deng and
Yong Wang},
title = {Computational probing protein-protein interactions targeting small
molecules},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {226--234},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv528},
doi = {10.1093/BIOINFORMATICS/BTV528},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCDW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCM16,
author = {Zichen Wang and
Neil R. Clark and
Avi Ma'ayan},
title = {Drug-induced adverse events prediction with the {LINCS} {L1000} data},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2338--2345},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw168},
doi = {10.1093/BIOINFORMATICS/BTW168},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCYPCZPK16,
author = {Xuefeng Wang and
Mengjie Chen and
Xiaoqing Yu and
Natapol Pornputtapong and
Hao Chen and
Nancy Ruonan Zhang and
R. Scott Powers and
Michael Krauthammer},
title = {Global copy number profiling of cancer genomes},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {926--928},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv676},
doi = {10.1093/BIOINFORMATICS/BTV676},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCYPCZPK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangD16,
author = {Xiaoyu Wang and
James Y. Dai},
title = {TwoPhaseInd: an {R} package for estimating gene-treatment interactions
and discovering predictive markers in randomized clinical trials},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3348--3350},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw391},
doi = {10.1093/BIOINFORMATICS/BTW391},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangGHP16,
author = {Sufang Wang and
Michael Gribskov and
Tony R. Hazbun and
Pete E. Pascuzzi},
title = {CellMiner Companion: an interactive web application to explore CellMiner
{NCI-60} data},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2399--2401},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw162},
doi = {10.1093/BIOINFORMATICS/BTW162},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangGHP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangHBN16,
author = {Shengjie Wang and
John T. Halloran and
Jeff A. Bilmes and
William S. Noble},
title = {Faster and more accurate graphical model identification of tandem
mass spectra using trellises},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {322--331},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw269},
doi = {10.1093/BIOINFORMATICS/BTW269},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangHBN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangHWBXK16,
author = {Chen Wang and
Gang Hu and
Kui Wang and
Michal Brylinski and
Lei Xie and
Lukasz A. Kurgan},
title = {{PDID:} database of molecular-level putative protein-drug interactions
in the structural human proteome},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {579--586},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv597},
doi = {10.1093/BIOINFORMATICS/BTV597},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangHWBXK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMD16,
author = {Zhong Wang and
Andr{\'{e}} L. Martins and
Charles G. Danko},
title = {{RTFBSDB:} an integrated framework for transcription factor binding
site analysis},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3024--3026},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw338},
doi = {10.1093/BIOINFORMATICS/BTW338},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMG16,
author = {Shicai Wang and
Mihaela A. Mares and
Yike Guo},
title = {{CGDM:} collaborative genomic data model for molecular profiling data
using NoSQL},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3654--3660},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw531},
doi = {10.1093/BIOINFORMATICS/BTW531},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMK16,
author = {Hao Wang and
Joel McManus and
Carl Kingsford},
title = {Isoform-level ribosome occupancy estimation guided by transcript abundance
with Ribomap},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1880--1882},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw085},
doi = {10.1093/BIOINFORMATICS/BTW085},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMX16,
author = {Sheng Wang and
Jianzhu Ma and
Jinbo Xu},
title = {AUCpreD: proteome-level protein disorder prediction by AUC-maximized
deep convolutional neural fields},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {672--679},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw446},
doi = {10.1093/BIOINFORMATICS/BTW446},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangPBS16,
author = {Paul P. S. Wang and
Wendy T. Parker and
Susan Branford and
Andreas W. Schreiber},
title = {BAM-matcher: a tool for rapid {NGS} sample matching},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2699--2701},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw239},
doi = {10.1093/BIOINFORMATICS/BTW239},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangPBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangTRGHYCG16,
author = {Yi Wang and
Vijay K. Tiwari and
Nidhi Rawat and
Bikram S. Gill and
Naxin Huo and
Frank M. You and
Devin Coleman{-}Derr and
Yong Qiang Gu},
title = {{GSP:} a web-based platform for designing genome-specific primers
in polyploids},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2382--2383},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw134},
doi = {10.1093/BIOINFORMATICS/BTW134},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangTRGHYCG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWM16,
author = {Zhiying Wang and
Tsachy Weissman and
Olgica Milenkovic},
title = {smallWig: parallel compression of RNA-seq {WIG} files},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {173--180},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv561},
doi = {10.1093/BIOINFORMATICS/BTV561},
timestamp = {Wed, 28 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangXGC16,
author = {Yi Wang and
Ling Xu and
Yong Qiang Gu and
Devin Coleman{-}Derr},
title = {MetaCoMET: a web platform for discovery and visualization of the core
microbiome},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3469--3470},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw507},
doi = {10.1093/BIOINFORMATICS/BTW507},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangXGC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZA16,
author = {Lin Wang and
Min Zhang and
Emil Alexov},
title = {DelPhiPKa web server: predicting p\emph{K}\({}_{\mbox{a}}\) of proteins,
RNAs and DNAs},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {614--615},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv607},
doi = {10.1093/BIOINFORMATICS/BTV607},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZDLKTXJ16,
author = {Shuang Wang and
Yuchen Zhang and
Wenrui Dai and
Kristin E. Lauter and
Miran Kim and
Yuzhe Richard Tang and
Hongkai Xiong and
Xiaoqian Jiang},
title = {{HEALER:} homomorphic computation of ExAct Logistic rEgRession for
secure rare disease variants analysis in {GWAS}},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {211--218},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv563},
doi = {10.1093/BIOINFORMATICS/BTV563},
timestamp = {Thu, 19 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZDLKTXJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZZXZWNSLB16,
author = {Chao Wang and
Haicang Zhang and
Wei{-}Mou Zheng and
Dong Xu and
Jianwei Zhu and
Bing Wang and
Kang Ning and
Shiwei Sun and
Shuai Cheng Li and
Dongbo Bu},
title = {FALCON@home: a high-throughput protein structure prediction server
based on remote homologue recognition},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {462--464},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv581},
doi = {10.1093/BIOINFORMATICS/BTV581},
timestamp = {Wed, 30 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZZXZWNSLB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WardCFB16,
author = {Joseph Ward and
Christian Cole and
Melanie Febrer and
Geoffrey J. Barton},
title = {AlmostSignificant: simplifying quality control of high-throughput
sequencing data},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3850--3851},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw559},
doi = {10.1093/BIOINFORMATICS/BTW559},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WardCFB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WatanabeMHRS16,
author = {Kenneth A. Watanabe and
Kaiwang Ma and
Arielle Homayouni and
Paul J. Rushton and
Qingxi J. Shen},
title = {Transcript structure and domain display: a customizable transcript
visualization tool},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2024--2025},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw095},
doi = {10.1093/BIOINFORMATICS/BTW095},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WatanabeMHRS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiLL16,
author = {Chih{-}Hsuan Wei and
Robert Leaman and
Zhiyong Lu},
title = {Beyond accuracy: creating interoperable and scalable text-mining web
services},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1907--1910},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv760},
doi = {10.1093/BIOINFORMATICS/BTV760},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiW16,
author = {Yingying Wei and
Hao Wu},
title = {Measuring the spatial correlations of protein binding sites},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1766--1772},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw058},
doi = {10.1093/BIOINFORMATICS/BTW058},
timestamp = {Mon, 30 Mar 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeindlWH16,
author = {Daniel Weindl and
Andr{\'{e}} Wegner and
Karsten Hiller},
title = {{MIA:} non-targeted mass isotopolome analysis},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2875--2876},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw317},
doi = {10.1093/BIOINFORMATICS/BTW317},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeindlWH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeinmaierPFHTR16,
author = {Thomas Weinmaier and
Alexander Platzer and
Jeroen Frank and
Hans{-}J{\"{o}}rg Hellinger and
Patrick Tischler and
Thomas Rattei},
title = {ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3327--3329},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw393},
doi = {10.1093/BIOINFORMATICS/BTW393},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeinmaierPFHTR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeinrebR16,
author = {Caleb Weinreb and
Benjamin J. Raphael},
title = {Identification of hierarchical chromatin domains},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1601--1609},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv485},
doi = {10.1093/BIOINFORMATICS/BTV485},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeinrebR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenCZZL16,
author = {Yalu Wen and
Fushun Chen and
Qingzheng Zhang and
Yan Zhuang and
Zhiguang Li},
title = {Detection of differentially methylated regions in whole genome bisulfite
sequencing data using local Getis-Ord statistics},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3396--3404},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw497},
doi = {10.1093/BIOINFORMATICS/BTW497},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenCZZL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenSXWQ16,
author = {Ping{-}Ping Wen and
Shaoping Shi and
Hao{-}Dong Xu and
Li{-}na Wang and
Jian{-}Ding Qiu},
title = {Accurate \emph{in silico} prediction of species-specific methylation
sites based on information gain feature optimization},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3107--3115},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw377},
doi = {10.1093/BIOINFORMATICS/BTW377},
timestamp = {Tue, 22 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenSXWQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenWGZ16,
author = {Yan Wen and
Wenyu Wang and
Xiong Guo and
Feng Zhang},
title = {{PAPA:} a flexible tool for identifying pleiotropic pathways using
genome-wide association study summaries},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {946--948},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv668},
doi = {10.1093/BIOINFORMATICS/BTV668},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenWGZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenXX16,
author = {Pengbo Wen and
Peng Xiao and
Junfeng Xia},
title = {dbDSM: a manually curated database for deleterious synonymous mutations},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1914--1916},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw086},
doi = {10.1093/BIOINFORMATICS/BTW086},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenXX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WheelerBKG16,
author = {Nicole E. Wheeler and
Lars Barquist and
Robert A. Kingsley and
Paul P. Gardner},
title = {A profile-based method for identifying functional divergence of orthologous
genes in bacterial genomes},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3566--3574},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw518},
doi = {10.1093/BIOINFORMATICS/BTW518},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WheelerBKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhelanNOO16,
author = {Eoin C. Whelan and
Alexander C. Nwala and
Christopher Osgood and
Stephan Olariu},
title = {Selective mutation accumulation: a computational model of the paternal
age effect},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3790--3797},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw528},
doi = {10.1093/BIOINFORMATICS/BTW528},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhelanNOO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WilkesAS16,
author = {Cyril Denby Wilkes and
Olivier Arnaiz and
Linda Sperling},
title = {ParTIES: a toolbox for \emph{Paramecium} interspersed {DNA} elimination
studies},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {599--601},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv691},
doi = {10.1093/BIOINFORMATICS/BTV691},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WilkesAS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WillH16,
author = {Thorsten Will and
Volkhard Helms},
title = {PPIXpress: construction of condition-specific protein interaction
networks based on transcript expression},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {571--578},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv620},
doi = {10.1093/BIOINFORMATICS/BTV620},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WillH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WinterBHBLPZB16,
author = {Jan Winter and
Marco Breinig and
Florian Heigwer and
Dirk Br{\"{u}}gemann and
Svenja Leible and
Oliver Pelz and
Tianzuo Zhan and
Michael Boutros},
title = {caRpools: an {R} package for exploratory data analysis and documentation
of pooled CRISPR/Cas9 screens},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {632--634},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv617},
doi = {10.1093/BIOINFORMATICS/BTV617},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WinterBHBLPZB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WinterMWTC16,
author = {Mark R. Winter and
Walter C. Mankowski and
Eric Wait and
Sally Temple and
Andrew R. Cohen},
title = {{LEVER:} software tools for segmentation, tracking and lineaging of
proliferating cells},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3530--3531},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw406},
doi = {10.1093/BIOINFORMATICS/BTW406},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WinterMWTC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WitvlietSGTCK16,
author = {Daniel K. Witvliet and
Alexey Strokach and
Andr{\'{e}}s Felipe Giraldo{-}Forero and
Joan Teyra and
Recep Colak and
Philip M. Kim},
title = {{ELASPIC} web-server: proteome-wide structure-based prediction of
mutation effects on protein stability and binding affinity},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1589--1591},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw031},
doi = {10.1093/BIOINFORMATICS/BTW031},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WitvlietSGTCK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WolfSNS16,
author = {Thomas Wolf and
Vladimir Shelest and
Neetika Nath and
Ekaterina Shelest},
title = {{CASSIS} and {SMIPS:} promoter-based prediction of secondary metabolite
gene clusters in eukaryotic genomes},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1138--1143},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv713},
doi = {10.1093/BIOINFORMATICS/BTV713},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WolfSNS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongLP16,
author = {Ka{-}Chun Wong and
Yue Li and
Chengbin Peng},
title = {Identification of coupling {DNA} motif pairs on long-range chromatin
interactions in human {K562} cells},
journal = {Bioinform.},
volume = {32},
number = {3},
pages = {321--324},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv555},
doi = {10.1093/BIOINFORMATICS/BTV555},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WoodcroftBT16,
author = {Ben J. Woodcroft and
Joel A. Boyd and
Gene W. Tyson},
title = {OrfM: a fast open reading frame predictor for metagenomic data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2702--2703},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw241},
doi = {10.1093/BIOINFORMATICS/BTW241},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WoodcroftBT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wren16,
author = {Jonathan D. Wren},
title = {Bioinformatics programs are 31-fold over-represented among the highest
impact scientific papers of the past two decades},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2686--2691},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw284},
doi = {10.1093/BIOINFORMATICS/BTW284},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wren16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WrightV16,
author = {Erik Scott Wright and
Kalin H. Vetsigian},
title = {DesignSignatures: a tool for designing primers that yields amplicons
with distinct signatures},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1565--1567},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw047},
doi = {10.1093/BIOINFORMATICS/BTW047},
timestamp = {Wed, 20 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WrightV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wu16,
author = {Yufeng Wu},
title = {An algorithm for computing the gene tree probability under the multispecies
coalescent and its application in the inference of population tree},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {225--233},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw261},
doi = {10.1093/BIOINFORMATICS/BTW261},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wu16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuAHKH16,
author = {Gang Wu and
Ron C. Anafi and
Michael Hughes and
Karl Kornacker and
John B. Hogenesch},
title = {MetaCycle: an integrated {R} package to evaluate periodicity in large
scale data},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3351--3353},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw405},
doi = {10.1093/BIOINFORMATICS/BTW405},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuAHKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuM16,
author = {Hua{-}Jun Wu and
Franziska Michor},
title = {A computational strategy to adjust for copy number in tumor Hi-C data},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3695--3701},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw540},
doi = {10.1093/BIOINFORMATICS/BTW540},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuSS16,
author = {Yu{-}Wei Wu and
Blake A. Simmons and
Steven W. Singer},
title = {MaxBin 2.0: an automated binning algorithm to recover genomes from
multiple metagenomic datasets},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {605--607},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv638},
doi = {10.1093/BIOINFORMATICS/BTV638},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaVK16,
author = {Bing Xia and
Sandor Vajda and
Dima Kozakov},
title = {Accounting for pairwise distance restraints in FFT-based protein-protein
docking},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3342--3344},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw306},
doi = {10.1093/BIOINFORMATICS/BTW306},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaVK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieWWJ16,
author = {Minzhu Xie and
Qiong Wu and
Jianxin Wang and
Tao Jiang},
title = {H-PoP and H-PoPG: heuristic partitioning algorithms for single individual
haplotyping of polyploids},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3735--3744},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw537},
doi = {10.1093/BIOINFORMATICS/BTW537},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieWWJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XinNZEPKAM16,
author = {Hongyi Xin and
Sunny Nahar and
Richard L. Zhu and
John Emmons and
Gennady Pekhimenko and
Carl Kingsford and
Can Alkan and
Onur Mutlu},
title = {Optimal seed solver: optimizing seed selection in read mapping},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1632--1642},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv670},
doi = {10.1093/BIOINFORMATICS/BTV670},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XinNZEPKAM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuTLHN16,
author = {Zongli Xu and
Jack A. Taylor and
Yuet{-}Kin Leung and
Shuk{-}Mei Ho and
Liang Niu},
title = {oxBS-MLE: an efficient method to estimate 5-methylcytosine and 5-hydroxymethylcytosine
in paired bisulfite and oxidative bisulfite treated {DNA}},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3667--3669},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw527},
doi = {10.1093/BIOINFORMATICS/BTW527},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuTLHN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuYS16,
author = {Ying{-}Ying Xu and
Fan Yang and
Hong{-}Bin Shen},
title = {Incorporating organelle correlations into semi-supervised learning
for protein subcellular localization prediction},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2184--2192},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw219},
doi = {10.1093/BIOINFORMATICS/BTW219},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuYS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuZJCFSQHL16,
author = {Zheng Xu and
Guosheng Zhang and
Fulai Jin and
Mengjie Chen and
Terrence S. Furey and
Patrick F. Sullivan and
Zhaohui S. Qin and
Ming Hu and
Yun Li},
title = {A hidden Markov random field-based Bayesian method for the detection
of long-range chromosomal interactions in Hi-C data},
journal = {Bioinform.},
volume = {32},
number = {5},
pages = {650--656},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv650},
doi = {10.1093/BIOINFORMATICS/BTV650},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuZJCFSQHL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuZWLH16,
author = {Zheng Xu and
Guosheng Zhang and
Cong Wu and
Yun Li and
Ming Hu},
title = {FastHiC: a fast and accurate algorithm to detect long-range chromosomal
interactions from Hi-C data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {2692--2695},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw240},
doi = {10.1093/BIOINFORMATICS/BTW240},
timestamp = {Thu, 05 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuZWLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuZXWCZW16,
author = {Dong Xu and
Meizhuo Zhang and
Yanping Xie and
Fan Wang and
Ming Chen and
Kenny Q. Zhu and
Jia Wei},
title = {DTMiner: identification of potential disease targets through biomedical
literature mining},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3619--3626},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw503},
doi = {10.1093/BIOINFORMATICS/BTW503},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuZXWCZW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XueRKBV16,
author = {Li C. Xue and
Jo{\~{a}}o P. G. L. M. Rodrigues and
Panagiotis L. Kastritis and
Alexandre M. J. J. Bonvin and
Anna Vangone},
title = {{PRODIGY:} a web server for predicting the binding affinity of protein-protein
complexes},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3676--3678},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw514},
doi = {10.1093/BIOINFORMATICS/BTW514},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XueRKBV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YachdavWRSSPLRG16,
author = {Guy Yachdav and
Sebastian Wilzbach and
Benedikt Rauscher and
Robert Sheridan and
Ian Sillitoe and
James B. Procter and
Suzanna E. Lewis and
Burkhard Rost and
Tatyana Goldberg},
title = {MSAViewer: interactive JavaScript visualization of multiple sequence
alignments},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3501--3503},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw474},
doi = {10.1093/BIOINFORMATICS/BTW474},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YachdavWRSSPLRG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YamadaTK16,
author = {Kazunori D. Yamada and
Kentaro Tomii and
Kazutaka Katoh},
title = {Application of the {MAFFT} sequence alignment program to large data
- reexamination of the usefulness of chained guide trees},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3246--3251},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw412},
doi = {10.1093/BIOINFORMATICS/BTW412},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YamadaTK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangDC16,
author = {Jian Yang and
Gaofeng Deng and
Haoyang Cai},
title = {ChromothripsisDB: a curated database of chromothripsis},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1433--1435},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv757},
doi = {10.1093/BIOINFORMATICS/BTV757},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangDC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangDS16,
author = {Wentao Yang and
Katja Dierking and
Hinrich Schulenburg},
title = {WormExp: a web-based application for a \emph{Caenorhabditis elegans}-specific
gene expression enrichment analysis},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {943--945},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv667},
doi = {10.1093/BIOINFORMATICS/BTV667},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangDS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangHJYJ16,
author = {Pengyi Yang and
Sean J. Humphrey and
David E. James and
Yee Hwa Yang and
Raja Jothi},
title = {Positive-unlabeled ensemble learning for kinase substrate prediction
from dynamic phosphoproteomics data},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {252--259},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv550},
doi = {10.1093/BIOINFORMATICS/BTV550},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangHJYJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangJ16,
author = {Ei{-}Wen Yang and
Tao Jiang},
title = {{SDEAP:} a splice graph based differential transcript expression analysis
tool for population data},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3593--3602},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw513},
doi = {10.1093/BIOINFORMATICS/BTW513},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangJCMLZCTZ16,
author = {Ying Yang and
Xiaotao Jiang and
Benli Chai and
Liping Ma and
Bing Li and
Anni Zhang and
James R. Cole and
James M. Tiedje and
Tong Zhang},
title = {ARGs-OAP: online analysis pipeline for antibiotic resistance genes
detection from metagenomic data using an integrated structured ARG-database},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2346--2351},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw136},
doi = {10.1093/BIOINFORMATICS/BTW136},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangJCMLZCTZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangJZS16,
author = {Jing Yang and
Qi{-}Yu Jin and
Biao Zhang and
Hong{-}Bin Shen},
title = {R\({}_{\mbox{2}}\)C: improving \emph{ab initio} residue contact map
prediction using dynamic fusion strategy and Gaussian noise filter},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2435--2443},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw181},
doi = {10.1093/BIOINFORMATICS/BTW181},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangJZS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangM16,
author = {Zi Yang and
George Michailidis},
title = {A non-negative matrix factorization method for detecting modules in
heterogeneous omics multi-modal data},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {1--8},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv544},
doi = {10.1093/BIOINFORMATICS/BTV544},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangNSV16,
author = {Yang Yang and
Abhishek Niroula and
Bairong Shen and
Mauno Vihinen},
title = {PON-Sol: prediction of effects of amino acid substitutions on protein
solubility},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2032--2034},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw066},
doi = {10.1093/BIOINFORMATICS/BTW066},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangNSV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangPGR16,
author = {Jing Yang and
Christopher A. Penfold and
Murray R. Grant and
Magnus Rattray},
title = {Inferring the perturbation time from biological time course data},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {2956--2964},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw329},
doi = {10.1093/BIOINFORMATICS/BTW329},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangPGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangSLBB16,
author = {Kun Yang and
Giovanni Stracquadanio and
Jingchuan Luo and
Jef D. Boeke and
Joel S. Bader},
title = {BioPartsBuilder: a synthetic biology tool for combinatorial assembly
of biological parts},
journal = {Bioinform.},
volume = {32},
number = {6},
pages = {937--939},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv664},
doi = {10.1093/BIOINFORMATICS/BTV664},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangSLBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YaoC16,
author = {Po{-}Ju Yao and
Ren{-}Hua Chung},
title = {SeqSIMLA2{\_}exact: simulate multiple disease sites in large pedigrees
with given disease status for diseases with low prevalence},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {557--562},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv626},
doi = {10.1093/BIOINFORMATICS/BTV626},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YaoC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeT16,
author = {Yuzhen Ye and
Haixu Tang},
title = {Utilizing de Bruijn graph of metagenome assembly for metatranscriptome
analysis},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {1001--1008},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv510},
doi = {10.1093/BIOINFORMATICS/BTV510},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YounesyNLJKM16,
author = {Hamid Younesy and
Cydney B. Nielsen and
Matthew C. Lorincz and
Steven J. M. Jones and
Mohammad M. Karimi and
Torsten M{\"{o}}ller},
title = {ChAsE: chromatin analysis and exploration tool},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3324--3326},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw382},
doi = {10.1093/BIOINFORMATICS/BTW382},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YounesyNLJKM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YoungPKMMWM16,
author = {Jonathan H. Young and
Michael Peyton and
Hyun Seok Kim and
Elizabeth McMillan and
John D. Minna and
Michael A. White and
Edward M. Marcotte},
title = {Computational discovery of pathway-level genetic vulnerabilities in
non-small-cell lung cancer},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1373--1379},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw010},
doi = {10.1093/BIOINFORMATICS/BTW010},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YoungPKMMWM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuG16,
author = {Jinchao Yu and
Rapha{\"{e}}l Gu{\'{e}}rois},
title = {{PPI4DOCK:} large scale assessment of the use of homology models in
free docking over more than 1000 realistic targets},
journal = {Bioinform.},
volume = {32},
number = {24},
pages = {3760--3767},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw533},
doi = {10.1093/BIOINFORMATICS/BTW533},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuLP16,
author = {Wenbao Yu and
Seungyeoun Lee and
Taesung Park},
title = {A unified model based multifactor dimensionality reduction framework
for detecting gene-gene interactions},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {605--610},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw424},
doi = {10.1093/BIOINFORMATICS/BTW424},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuSC16,
author = {Jiyang Yu and
Jos{\'{e}} Silva and
Andrea Califano},
title = {ScreenBEAM: a novel meta-analysis algorithm for functional genomics
screens via Bayesian hierarchical modeling},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {260--267},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv556},
doi = {10.1093/BIOINFORMATICS/BTV556},
timestamp = {Fri, 16 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanGWZMZ16,
author = {Qingjun Yuan and
Junning Gao and
Dongliang Wu and
Shihua Zhang and
Hiroshi Mamitsuka and
Shanfeng Zhu},
title = {DrugE-Rank: improving drug-target interaction prediction of new candidate
drugs or targets by ensemble learning to rank},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {18--27},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw244},
doi = {10.1093/BIOINFORMATICS/BTW244},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanGWZMZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanZCWSHCH16,
author = {Jiao Yuan and
Peng Zhang and
Ya Cui and
Jiajia Wang and
Geir Skogerb{\o} and
Da{-}Wei Huang and
Runsheng Chen and
Shunmin He},
title = {Computational identification of piRNA targets on mouse mRNAs},
journal = {Bioinform.},
volume = {32},
number = {8},
pages = {1170--1177},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv729},
doi = {10.1093/BIOINFORMATICS/BTV729},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanZCWSHCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZaidmanW16,
author = {Daniel Zaidman and
Haim J. Wolfson},
title = {PinaColada: peptide-inhibitor ant colony ad-hoc design algorithm},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2289--2296},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw133},
doi = {10.1093/BIOINFORMATICS/BTW133},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZaidmanW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZampieriS16,
author = {Mattia Zampieri and
Uwe Sauer},
title = {Model-based media selection to minimize the cost of metabolic cooperation
in microbial ecosystems},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1733--1739},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw062},
doi = {10.1093/BIOINFORMATICS/BTW062},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZampieriS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengELG16,
author = {Haoyang Zeng and
Matthew D. Edwards and
Ge Liu and
David K. Gifford},
title = {Convolutional neural network architectures for predicting DNA-protein
binding},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {121--127},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw255},
doi = {10.1093/BIOINFORMATICS/BTW255},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengELG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengHKG16,
author = {Haoyang Zeng and
Tatsunori B. Hashimoto and
Daniel D. Kang and
David K. Gifford},
title = {{GERV:} a statistical method for generative evaluation of regulatory
variants for transcription factor binding},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {490--496},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv565},
doi = {10.1093/BIOINFORMATICS/BTV565},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengHKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhanGZWG16,
author = {Xiang Zhan and
Santhosh Girirajan and
Ni Zhao and
Michael C. Wu and
Debashis Ghosh},
title = {A novel copy number variants kernel association test with application
to autism spectrum disorders studies},
journal = {Bioinform.},
volume = {32},
number = {23},
pages = {3603--3610},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw500},
doi = {10.1093/BIOINFORMATICS/BTW500},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhanGZWG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhanHLAL16,
author = {Xiaowei Zhan and
Youna Hu and
Bingshan Li and
Gon{\c{c}}alo R. Abecasis and
Dajiang J. Liu},
title = {{RVTESTS:} an efficient and comprehensive tool for rare variant association
analysis using sequence data},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1423--1426},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw079},
doi = {10.1093/BIOINFORMATICS/BTW079},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhanHLAL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangBB16,
author = {Qian S. Zhang and
Brian L. Browning and
Sharon R. Browning},
title = {{ASAFE:} ancestry-specific allele frequency estimation},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2227--2229},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw220},
doi = {10.1093/BIOINFORMATICS/BTW220},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangKMLCYGLW16,
author = {Jianwei Zhang and
Dave Kudrna and
Ting Mu and
Weiming Li and
Dario Copetti and
Yeisoo Yu and
Jose Luis Goicoechea and
Yang Lei and
Rod A. Wing},
title = {Genome puzzle master {(GPM):} an integrated pipeline for building
and editing pseudomolecules from fragmented sequences},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3058--3064},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw370},
doi = {10.1093/BIOINFORMATICS/BTW370},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangKMLCYGLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangW16,
author = {Jie Zhang and
Zhi Wei},
title = {An empirical Bayes change-point model for identifying 3{\({'}\)}
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sequencing},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1823--1831},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw060},
doi = {10.1093/BIOINFORMATICS/BTW060},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWLDZWWP16,
author = {Zhen Zhang and
Jianxin Wang and
Junwei Luo and
Xiaojun Ding and
Jiancheng Zhong and
Jun Wang and
Fang{-}Xiang Wu and
Yi Pan},
title = {Sprites: detection of deletions from sequencing data by re-aligning
split reads},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1788--1796},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw053},
doi = {10.1093/BIOINFORMATICS/BTW053},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWLDZWWP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZXZBZYHILS16,
author = {Yuanwei Zhang and
Qiguang Zang and
Bo Xu and
Wei Zheng and
Rongjun Ban and
Huan Zhang and
Yifan Yang and
QiaoMei Hao and
Furhan Iqbal and
Ao Li and
Qinghua Shi},
title = {IsomiR Bank: a research resource for tracking IsomiRs},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2069--2071},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw070},
doi = {10.1093/BIOINFORMATICS/BTW070},
timestamp = {Thu, 02 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZXZBZYHILS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZZGJYZSJCV16,
author = {Haixiang Zhang and
Yinan Zheng and
Zhou Zhang and
Tao Gao and
Brian Joyce and
Grace Yoon and
Wei Zhang and
Joel Schwartz and
Allan C. Just and
Elena Colicino and
Pantel Vokonas and
Lihui Zhao and
Jinchi Lv and
Andrea A. Baccarelli and
Lifang Hou and
Lei Liu},
title = {Estimating and testing high-dimensional mediation effects in epigenetic
studies},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3150--3154},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw351},
doi = {10.1093/BIOINFORMATICS/BTW351},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZZGJYZSJCV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoYLLW16,
author = {Zhehuan Zhao and
Zhihao Yang and
Ling Luo and
Hongfei Lin and
Jian Wang},
title = {Drug drug interaction extraction from biomedical literature using
syntax convolutional neural network},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3444--3453},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw486},
doi = {10.1093/BIOINFORMATICS/BTW486},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoYLLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouS16,
author = {Hongyi Zhou and
Jeffrey Skolnick},
title = {A knowledge-based approach for predicting gene-disease associations},
journal = {Bioinform.},
volume = {32},
number = {18},
pages = {2831--2838},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw358},
doi = {10.1093/BIOINFORMATICS/BTW358},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuOM16,
author = {Hao Zhu and
Markus R. Owen and
Yanlan Mao},
title = {The spatiotemporal order of signaling events unveils the logic of
development signaling},
journal = {Bioinform.},
volume = {32},
number = {15},
pages = {2313--2320},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw121},
doi = {10.1093/BIOINFORMATICS/BTW121},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuOM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuSXXXSSL16,
author = {Bai{-}Han Zhu and
Ying{-}Nan Song and
Wei Xue and
Gui{-}Cai Xu and
Jun Xiao and
Ming{-}Yuan Sun and
Xiaowen Sun and
Jiongtang Li},
title = {PEP{\_}scaffolder: using (homologous) proteins to scaffold genomes},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3193--3195},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw378},
doi = {10.1093/BIOINFORMATICS/BTW378},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuSXXXSSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZieglerSGBS16,
author = {Zachary Ziegler and
Molly Schmidt and
Thomas Gurry and
Virginia Burger and
Collin M. Stultz},
title = {Mollack: a web server for the automated creation of conformational
ensembles for intrinsically disordered proteins},
journal = {Bioinform.},
volume = {32},
number = {16},
pages = {2545--2547},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw200},
doi = {10.1093/BIOINFORMATICS/BTW200},
timestamp = {Fri, 03 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZieglerSGBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikZ16,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Jumping across biomedical contexts using compressive data fusion},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {90--100},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw247},
doi = {10.1093/BIOINFORMATICS/BTW247},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZiyatdinovBMBPS16,
author = {Andrey Ziyatdinov and
Helena Brunel and
Angel Martinez{-}Perez and
Alfonso Buil and
Alexandre Perera and
Jos{\'{e}} Manuel Soria},
title = {solarius: an {R} interface to {SOLAR} for variance component analysis
in pedigrees},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1901--1902},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw080},
doi = {10.1093/BIOINFORMATICS/BTW080},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZiyatdinovBMBPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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