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@article{DBLP:journals/bmcbi/AbbasiRK11,
author = {Omid Abbasi and
Ali Rostami and
Ghader Karimian},
title = {Identification of exonic regions in {DNA} sequences using cross-correlation
and noise suppression by discrete wavelet transform},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {430},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-430},
doi = {10.1186/1471-2105-12-430},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbbasiRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AdamusiakBKVAAKPS11,
author = {Tomasz Adamusiak and
Tony Burdett and
Natalja Kurbatova and
K. Joeri van der Velde and
Niran Abeygunawardena and
Despoina Antonakaki and
Misha Kapushesky and
Helen E. Parkinson and
Morris A. Swertz},
title = {OntoCAT - simple ontology search and integration in Java, {R} and
REST/JavaScript},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {218},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-218},
doi = {10.1186/1471-2105-12-218},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AdamusiakBKVAAKPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AfzalHAC11,
author = {Vackar Afzal and
Jeffrey T.{-}J. Huang and
Abdel Atrih and
Daniel J. Crowther},
title = {PChopper: High Throughput Peptide Prediction For {MRM/SRM} Transition
Design},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {338},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-338},
doi = {10.1186/1471-2105-12-338},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AfzalHAC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AgarwalYK11,
author = {Shashank Agarwal and
Hong Yu and
Isaac S. Kohane},
title = {BioNOT: {A} searchable database of biomedical negated sentences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {420},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-420},
doi = {10.1186/1471-2105-12-420},
timestamp = {Sun, 22 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AgarwalYK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AgopianM11,
author = {A. J. Agopian and
Laura E. Mitchell},
title = {{MI-GWAS:} a {SAS} platform for the analysis of inherited and maternal
genetic effects in genome-wide association studies using log-linear
models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {117},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-117},
doi = {10.1186/1471-2105-12-117},
timestamp = {Mon, 14 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AgopianM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlexanderL11,
author = {David H. Alexander and
Kenneth Lange},
title = {Enhancements to the {ADMIXTURE} Algorithm for Individual Ancestry
Estimation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {246},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-246},
doi = {10.1186/1471-2105-12-246},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlexanderL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AltayAMN11,
author = {Gokmen Altay and
Mohammad Asim and
Florian Markowetz and
David E. Neal},
title = {Differential {C3NET} reveals disease networks of direct physical interactions},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {296},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-296},
doi = {10.1186/1471-2105-12-296},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AltayAMN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlvarezW11,
author = {Angel Alvarez and
Peter J. Woolf},
title = {RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized
Prostate Tumor Samples},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {243},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-243},
doi = {10.1186/1471-2105-12-243},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlvarezW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlvarssonASLW11,
author = {Jonathan Alvarsson and
Claes R. Andersson and
Ola Spjuth and
Rolf Larsson and
Jarl E. S. Wikberg},
title = {Brunn: An open source laboratory information system for microplates
with a graphical plate layout design process},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {179},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-179},
doi = {10.1186/1471-2105-12-179},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlvarssonASLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AmbroiseBRGMG11,
author = {J{\'{e}}r{\^{o}}me Ambroise and
Bertrand Bearzatto and
Annie Robert and
Bernadette Govaerts and
Beno{\^{\i}}t Macq and
Jean{-}Luc Gala},
title = {Impact of the spotted microarray preprocessing method on fold-change
compression and variance stability},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {413},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-413},
doi = {10.1186/1471-2105-12-413},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AmbroiseBRGMG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AmigoSP11,
author = {Jorge Amigo and
Antonio Salas and
Christopher Phillips},
title = {{ENGINES:} exploring single nucleotide variation in entire human genomes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {105},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-105},
doi = {10.1186/1471-2105-12-105},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AmigoSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AminSYAMAML11,
author = {Samir B. Amin and
Parantu K. Shah and
Aimin Yan and
Sophia Adamia and
St{\'{e}}phane Minvielle and
Herve Avet{-}Loiseau and
Nikhil C. Munshi and
Cheng Li},
title = {The dChip survival analysis module for microarray data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {72},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-72},
doi = {10.1186/1471-2105-12-72},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AminSYAMAML11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Amos-BinksPPSGGGD11,
author = {Adam Amos{-}Binks and
Catalin Patulea and
Sylvain Pitre and
Andrew Schoenrock and
Yuan Gui and
James R. Green and
Ashkan Golshani and
Frank K. H. A. Dehne},
title = {Binding Site Prediction for Protein-Protein Interactions and Novel
Motif Discovery using Re-occurring Polypeptide Sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {225},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-225},
doi = {10.1186/1471-2105-12-225},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Amos-BinksPPSGGGD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AndersonSM11,
author = {Catherine L. Anderson and
Cory L. Strope and
Etsuko N. Moriyama},
title = {SuiteMSA: Visual Tools for Multiple Sequence Alignment Comparison
and Molecular Sequence Simulation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {184},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-184},
doi = {10.1186/1471-2105-12-184},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AndersonSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AngiuoliHST11,
author = {Samuel V. Angiuoli and
Julie C. Dunning Hotopp and
Steven L. Salzberg and
Herv{\'{e}} Tettelin},
title = {Improving pan-genome annotation using whole genome multiple alignment},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {272},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-272},
doi = {10.1186/1471-2105-12-272},
timestamp = {Fri, 29 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AngiuoliHST11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AngiuoliMGGVRAWWF11,
author = {Samuel V. Angiuoli and
Malcolm Matalka and
Aaron Gussman and
Kevin Galens and
Mahesh Vangala and
David R. Riley and
Cesar Arze and
James Robert White and
Owen White and
W. Florian Fricke},
title = {CloVR: {A} virtual machine for automated and portable sequence analysis
from the desktop using cloud computing},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {356},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-356},
doi = {10.1186/1471-2105-12-356},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AngiuoliMGGVRAWWF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AntoniwBBURH11,
author = {John Antoniw and
Andrew M. Beacham and
Thomas K. Baldwin and
Martin Urban and
Jason J. Rudd and
Kim E. Hammond{-}Kosack},
title = {OmniMapFree: {A} unified tool to visualise and explore sequenced genomes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {447},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-447},
doi = {10.1186/1471-2105-12-447},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AntoniwBBURH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArellanoAABCGRA11,
author = {Gustavo Arellano and
Juli{\'{a}}n Argil and
Eugenio Azpeitia and
Mariana Ben{\'{\i}}tez and
Miguel Carrillo and
Pedro Arturo G{\'{o}}ngora and
David A. Rosenblueth and
Elena R. {\'{A}}lvarez{-}Buylla},
title = {"Antelope": a hybrid-logic model checker for branching-time Boolean
{GRN} analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {490},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-490},
doi = {10.1186/1471-2105-12-490},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArellanoAABCGRA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AvihooCB11,
author = {Assaf Avihoo and
Alexander Churkin and
Danny Barash},
title = {RNAexinv: An Extended Inverse {RNA} Folding from Shape and Physical
Attributes to Sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {319},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-319},
doi = {10.1186/1471-2105-12-319},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AvihooCB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AxelssonSHBHF11,
author = {Elin Axelsson and
Thomas Sandmann and
Thomas Horn and
Michael Boutros and
Wolfgang Huber and
Bernd Fischer},
title = {Extracting quantitative genetic interaction phenotypes from matrix
combinatorial RNAi},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {342},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-342},
doi = {10.1186/1471-2105-12-342},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AxelssonSHBHF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AydinSBN11,
author = {Zafer Aydin and
Ajit P. Singh and
Jeff A. Bilmes and
William Stafford Noble},
title = {Learning sparse models for a dynamic Bayesian network classifier of
protein secondary structure},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {154},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-154},
doi = {10.1186/1471-2105-12-154},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AydinSBN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaeS11,
author = {Se{-}Eun Bae and
Hyeon Seok Son},
title = {Classification of viral zoonosis through receptor pattern analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {96},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-96},
doi = {10.1186/1471-2105-12-96},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BaeS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaghdadiZSSBHL11,
author = {Leila Baghdadi and
Mojdeh Zamyadi and
John G. Sled and
J{\"{u}}rgen E. Schneider and
Shuomo Bhattacharya and
R. Mark Henkelman and
Jason P. Lerch},
title = {Semi-Automatic Segmentation of Multiple Mouse Embryos in {MR} Images},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {237},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-237},
doi = {10.1186/1471-2105-12-237},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BaghdadiZSSBHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Barbosa-SilvaFDSOA11,
author = {Adriano Barbosa{-}Silva and
Jean{-}Fred Fontaine and
Elisa R. Donnard and
Fernanda Stussi and
Jos{\'{e}} Miguel Ortega and
Miguel A. Andrade{-}Navarro},
title = {PESCADOR, a web-based tool to assist text-mining of biointeractions
extracted from PubMed queries},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {435},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-435},
doi = {10.1186/1471-2105-12-435},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Barbosa-SilvaFDSOA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarriusoVM11,
author = {Jorge Barriuso and
Jos{\'{e}} R. Valverde and
Rafael P. Mellado},
title = {Estimation of bacterial diversity using next generation sequencing
of 16S rDNA: a comparison of different workflows},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {473},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-473},
doi = {10.1186/1471-2105-12-473},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BarriusoVM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarsnesVCHSBM11,
author = {Harald Barsnes and
Marc Vaudel and
Niklaas Colaert and
Kenny Helsens and
Albert Sickmann and
Frode S. Berven and
Lennart Martens},
title = {compomics-utilities: an open-source Java library for computational
proteomics},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {70},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-70},
doi = {10.1186/1471-2105-12-70},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BarsnesVCHSBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BasuBB11,
author = {Sankar Basu and
Dhananjay Bhattacharyya and
Rahul Banerjee},
title = {Mapping the distribution of packing topologies within protein interiors
shows predominant preference for specific packing motifs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {195},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-195},
doi = {10.1186/1471-2105-12-195},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BasuBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BasuSH11,
author = {Malay Kumar Basu and
Jeremy D. Selengut and
Daniel H. Haft},
title = {ProPhylo: Partial Phylogenetic Profiling to guide protein family construction
and assignment of biological process},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {434},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-434},
doi = {10.1186/1471-2105-12-434},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BasuSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BauchABEEGKPQRBMAR11,
author = {Angela Bauch and
Izabela Adamczyk and
Piotr Buczek and
Franz{-}Josef Elmer and
Kaloyan Enimanev and
Pawel Glyzewski and
Manuel Kohler and
Tomasz Pylak and
Andreas Quandt and
Chandrasekhar Ramakrishnan and
Christian Beisel and
Lars Malmstr{\"{o}}m and
Ruedi Aebersold and
Bernd Rinn},
title = {openBIS: a flexible framework for managing and analyzing complex data
in biology research},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {468},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-468},
doi = {10.1186/1471-2105-12-468},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BauchABEEGKPQRBMAR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BauerKSTTCDBARSC11,
author = {Chris Bauer and
Frank Kleinjung and
Celia J. Smith and
Mark W. Towers and
Ali Tiss and
Alexandra Chadt and
Tanja Dreja and
Dieter Beule and
Hadi Al{-}Hasani and
Knut Reinert and
Johannes Schuchhardt and
Rainer Cramer},
title = {Biomarker Discovery and Redundancy Reduction towards Classification
using a Multi-factorial {MALDI-TOF} {MS} {T2DM} Mouse Model Dataset},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {140},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-140},
doi = {10.1186/1471-2105-12-140},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BauerKSTTCDBARSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BayaG11,
author = {Ariel E. Bay{\'{a}} and
Pablo M. Granitto},
title = {Clustering gene expression data with a penalized graph-based metric},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-2},
doi = {10.1186/1471-2105-12-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BayaG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BechecPVMZSATWLF11,
author = {Antony Le B{\'{e}}chec and
Elodie Portales{-}Casamar and
Guillaume Vetter and
Mich{\`{e}}le Moes and
Pierre{-}Joachim Zindy and
Anne Saumet and
David J. Arenillas and
Charles Theillet and
Wyeth W. Wasserman and
Charles{-}Henri Lecellier and
Evelyne Friederich},
title = {MIR@NT@N: a framework integrating transcription factors, microRNAs
and their targets to identify sub-network motifs in a meta-regulation
network model},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {67},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-67},
doi = {10.1186/1471-2105-12-67},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BechecPVMZSATWLF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeckerTLB11,
author = {Natalia Becker and
Grischa Toedt and
Peter Lichter and
Axel Benner},
title = {Elastic {SCAD} as a novel penalization method for {SVM} classification
tasks in high-dimensional data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {138},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-138},
doi = {10.1186/1471-2105-12-138},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BeckerTLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BenderHHWKB11,
author = {Christian Bender and
Silvia von der Heyde and
Frauke Henjes and
Stefan Wiemann and
Ulrike Korf and
Tim Bei{\ss}barth},
title = {Inferring signalling networks from longitudinal data using sampling
based approaches in the R-package 'ddepn'},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {291},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-291},
doi = {10.1186/1471-2105-12-291},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BenderHHWKB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergemannW11,
author = {Tracy L. Bergemann and
Jason Wilson},
title = {Proportion statistics to detect differentially expressed genes: a
comparison with log-ratio statistics},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {228},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-228},
doi = {10.1186/1471-2105-12-228},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BergemannW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergerC11,
author = {Fabrice Berger and
Enrico Carlon},
title = {From hybridization theory to microarray data analysis: performance
evaluation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {464},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-464},
doi = {10.1186/1471-2105-12-464},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BergerC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BernardesCZ11,
author = {Juliana S. Bernardes and
Alessandra Carbone and
Gerson Zaverucha},
title = {A discriminative method for family-based protein remote homology detection
that combines inductive logic programming and propositional models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {83},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-83},
doi = {10.1186/1471-2105-12-83},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BernardesCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BickertonHB11,
author = {George R. Bickerton and
Alicia P. Higueruelo and
Tom L. Blundell},
title = {Comprehensive, atomic-level characterization of structurally characterized
protein-protein interactions: the {PICCOLO} database},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {313},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-313},
doi = {10.1186/1471-2105-12-313},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BickertonHB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BieriG11,
author = {Michael Bieri and
Paul R. Gooley},
title = {Automated {NMR} relaxation dispersion data analysis using {NESSY}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {421},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-421},
doi = {10.1186/1471-2105-12-421},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BieriG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BinR11,
author = {Riccardo De Bin and
Davide Risso},
title = {A novel approach to the clustering of microarray data via nonparametric
density estimation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {49},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-49},
doi = {10.1186/1471-2105-12-49},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BinR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlanchetSASAASTWLB11,
author = {Lionel Blanchet and
Agnieszka Smolinska and
Amos Attali and
Marcel P. Stoop and
Kirsten A. M. Ampt and
Hans van Aken and
Ernst Suidgeest and
Tinka Tuinstra and
Sybren S. Wijmenga and
Theo Luider and
Lutgarde M. C. Buydens},
title = {Fusion of metabolomics and proteomics data for biomarkers discovery:
case study on the experimental autoimmune encephalomyelitis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {254},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-254},
doi = {10.1186/1471-2105-12-254},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlanchetSASAASTWLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlancoMMR11,
author = {Roberto Blanco and
Elvira Mayordomo and
Julio Montoya and
Eduardo Ruiz{-}Pesini},
title = {Rebooting the human mitochondrial phylogeny: an automated and scalable
methodology with expert knowledge},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {174},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-174},
doi = {10.1186/1471-2105-12-174},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlancoMMR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlazewiczFKPW11,
author = {Jacek Blazewicz and
Wojciech Frohmberg and
Michal Kierzynka and
Erwin Pesch and
Pawel Wojciechowski},
title = {Protein alignment algorithms with an efficient backtracking routine
on multiple GPUs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {181},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-181},
doi = {10.1186/1471-2105-12-181},
timestamp = {Tue, 21 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BlazewiczFKPW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoekerTHSS11,
author = {Martin Boeker and
Ilinca Tudose and
Janna Hastings and
Daniel Schober and
Stefan Schulz},
title = {Unintended consequences of existential quantifications in biomedical
ontologies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {456},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-456},
doi = {10.1186/1471-2105-12-456},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BoekerTHSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BolenUK11,
author = {Christopher R. Bolen and
Mohamed Uduman and
Steven H. Kleinstein},
title = {Cell Subset Prediction for Blood Genomic Studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {258},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-258},
doi = {10.1186/1471-2105-12-258},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BolenUK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BontempiHDSQ11,
author = {Gianluca Bontempi and
Benjamin Haibe{-}Kains and
Christine Desmedt and
Christos P. Sotiriou and
John Quackenbush},
title = {Multiple-input multiple-output causal strategies for gene selection},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {458},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-458},
doi = {10.1186/1471-2105-12-458},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BontempiHDSQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BorghtCLHKBVV11,
author = {Koen Van der Borght and
Elke Van Craenenbroeck and
Pierre Lecocq and
Margriet Van Houtte and
Barbara Van Kerckhove and
Lee Bacheler and
Geert Verbeke and
Herman van Vlijmen},
title = {Cross-validated stepwise regression for identification of novel non-nucleoside
reverse transcriptase inhibitor resistance associated mutations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {386},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-386},
doi = {10.1186/1471-2105-12-386},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BorghtCLHKBVV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BorileLFSR11,
author = {Claudio Borile and
Mathieu Labarre and
Silvio Franz and
Christophe Sola and
Guislaine Refregier},
title = {Using affinity propagation for identifying subspecies among clonal
organisms: lessons from M. tuberculosis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {224},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-224},
doi = {10.1186/1471-2105-12-224},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BorileLFSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BraunLPR11,
author = {Rosemary Braun and
Gregory Leibon and
Scott D. Pauls and
Daniel N. Rockmore},
title = {Partition decoupling for multi-gene analysis of gene expression profiling
data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {497},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-497},
doi = {10.1186/1471-2105-12-497},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BraunLPR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BristowHD11,
author = {Franklin Bristow and
Runtao He and
Gary H. Van Domselaar},
title = {GOmotif: {A} web server for investigating the biological role of protein
sequence motifs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {379},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-379},
doi = {10.1186/1471-2105-12-379},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BristowHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrownSJD11,
author = {Justin R. Brown and
Phillip Stafford and
Stephen A. Johnston and
Valentin Dinu},
title = {Statistical Methods for Analyzing Immunosignatures},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {349},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-349},
doi = {10.1186/1471-2105-12-349},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrownSJD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrumbaughKGP11,
author = {Christopher D. Brumbaugh and
Hyunsung John Kim and
Mario Giovacchini and
Nader Pourmand},
title = {NanoStriDE: normalization and differential expression analysis of
NanoString nCounter data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {479},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-479},
doi = {10.1186/1471-2105-12-479},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrumbaughKGP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrusniakKCCRPKRDCMA11,
author = {Mi{-}Youn K. Brusniak and
Sung{-}Tat Kwok and
Mark Christiansen and
David S. Campbell and
Lukas Reiter and
Paola Picotti and
Ulrike Kusebauch and
Hector Ramos and
Eric W. Deutsch and
Jingchun Chen and
Robert L. Moritz and
Ruedi Aebersold},
title = {{ATAQS:} {A} computational software tool for high throughput transition
optimization and validation for selected reaction monitoring mass
spectrometry},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {78},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-78},
doi = {10.1186/1471-2105-12-78},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrusniakKCCRPKRDCMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BultDENARRDSBW11,
author = {Carol J. Bult and
Harold J. Drabkin and
Alexei V. Evsikov and
Darren A. Natale and
Cecilia N. Arighi and
Natalia V. Roberts and
Alan Ruttenberg and
Peter D'Eustachio and
Barry Smith and
Judith A. Blake and
Cathy H. Wu},
title = {The Representation of Protein Complexes in the Protein Ontology {(PRO)}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {371},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-371},
doi = {10.1186/1471-2105-12-371},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BultDENARRDSBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BuskeHPRN11,
author = {Orion J. Buske and
Michael M. Hoffman and
Nadia Ponts and
Karine G. Le Roch and
William Stafford Noble},
title = {Exploratory analysis of genomic segmentations with Segtools},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {415},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-415},
doi = {10.1186/1471-2105-12-415},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BuskeHPRN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaceresAVG11,
author = {Alejandro C{\'{a}}ceres and
Llu{\'{\i}}s Armengol and
Sergi Villatoro and
Juan R. Gonz{\'{a}}lez},
title = {MLPAstats: An {R} {GUI} package for the integrated analysis of copy
number alterations using {MLPA} data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {147},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-147},
doi = {10.1186/1471-2105-12-147},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaceresAVG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaiHX11,
author = {Xiaodong Cai and
Anhui Huang and
Shizhong Xu},
title = {Fast Empirical Bayesian {LASSO} for Multiple Quantitative Trait Locus
Mapping},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {211},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-211},
doi = {10.1186/1471-2105-12-211},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaiHX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaiYTC11,
author = {Bin Cai and
Xiaohan Yang and
Gerald A. Tuskan and
(Max) Zong{-}Ming Cheng},
title = {MicroSyn: {A} user friendly tool for detection of microsynteny in
a gene family},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {79},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-79},
doi = {10.1186/1471-2105-12-79},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaiYTC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaoBB11,
author = {Kim{-}Anh L{\^{e}} Cao and
Simon Boitard and
Philippe Besse},
title = {Sparse {PLS} Discriminant Analysis: biologically relevant feature
selection and graphical displays for multiclass problems},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {253},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-253},
doi = {10.1186/1471-2105-12-253},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaoBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CarreiraCPRRFL11,
author = {Rafael Carreira and
S{\'{o}}nia Carneiro and
Rui Pereira and
Miguel Rocha and
Isabel Rocha and
Eug{\'{e}}nio C. Ferreira and
An{\'{a}}lia Louren{\c{c}}o},
title = {Semantic annotation of biological concepts interplaying microbial
cellular responses},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {460},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-460},
doi = {10.1186/1471-2105-12-460},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CarreiraCPRRFL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CeruttiBGG11,
author = {Francesco Cerutti and
Luigi Bertolotti and
Tony L. Goldberg and
Mario Giacobini},
title = {Taxon ordering in phylogenetic trees: a workbench test},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {58},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-58},
doi = {10.1186/1471-2105-12-58},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CeruttiBGG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangFHCBGSP11,
author = {Hang Chang and
Gerald Fontenay and
Ju Han and
Ge Cong and
Frederick L. Baehner and
Joe W. Gray and
Paul T. Spellman and
Bahram Parvin},
title = {Morphometic analysis of {TCGA} glioblastoma multiforme},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {484},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-484},
doi = {10.1186/1471-2105-12-484},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangFHCBGSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangGLBVN11,
author = {Jeffrey T. Chang and
Michael L. Gatza and
Joseph E. Lucas and
William T. Barry and
Peyton Vaughn and
Joseph Nevins},
title = {{SIGNATURE:} {A} workbench for gene expression signature analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {443},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-443},
doi = {10.1186/1471-2105-12-443},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangGLBVN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangLS11,
author = {Qin Chang and
Yihui Luan and
Fengzhu Sun},
title = {Variance adjusted weighted UniFrac: a powerful beta diversity measure
for comparing communities based on phylogeny},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {118},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-118},
doi = {10.1186/1471-2105-12-118},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangSHRNCBS11,
author = {Wenling E. Chang and
Keri Sarver and
Brandon W. Higgs and
Timothy D. Read and
Nichole M. E. Nolan and
Carol E. Chapman and
Kimberly A. Bishop{-}Lilly and
Shanmuga Sozhamannan},
title = {PheMaDB: {A} solution for storage, retrieval, and analysis of high
throughput phenotype data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {109},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-109},
doi = {10.1186/1471-2105-12-109},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangSHRNCBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenB11,
author = {Hanbo Chen and
Paul C. Boutros},
title = {VennDiagram: a package for the generation of highly-customizable Venn
and Euler diagrams in {R}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {35},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-35},
doi = {10.1186/1471-2105-12-35},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenCYWWTS11,
author = {Ruoying Chen and
Wenjing Chen and
Sixiao Yang and
Di Wu and
Yong Wang and
Yingjie Tian and
Yong Shi},
title = {Rigorous assessment and integration of the sequence and structure
based features to predict hot spots},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {311},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-311},
doi = {10.1186/1471-2105-12-311},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenCYWWTS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenRL11,
author = {Shu{-}Chuan Chen and
Michael S. Rosenberg and
Bruce G. Lindsay},
title = {MixtureTree: a program for constructing phylogeny},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {111},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-111},
doi = {10.1186/1471-2105-12-111},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenRL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenSLGHM11,
author = {Wen Han Chen and
Ping Ping Sun and
Yang Lu and
William W. Guo and
Yan Xin Huang and
Zhi Qiang Ma},
title = {MimoPro: a more efficient Web-based tool for epitope prediction using
phage display libraries},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {199},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-199},
doi = {10.1186/1471-2105-12-199},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenSLGHM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengCASC11,
author = {Lu Cheng and
Thomas R. Connor and
David M. Aanensen and
Brian G. Spratt and
Jukka Corander},
title = {Bayesian semi-supervised classification of bacterial samples using
{MLST} databases},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {302},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-302},
doi = {10.1186/1471-2105-12-302},
timestamp = {Mon, 03 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengCASC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengZZLZ11,
author = {Feng Cheng and
Xianglong Zhang and
Yinan Zhang and
Chaohua Li and
Changqing Zeng},
title = {Haplo2Ped: a tool using haplotypes as markers for linkage analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {350},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-350},
doi = {10.1186/1471-2105-12-350},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengZZLZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChepelevRKLDB11,
author = {Leonid L. Chepelev and
Alexandre Riazanov and
Alexandre Kouznetsov and
Hong Sang Low and
Michel Dumontier and
Christopher J. O. Baker},
title = {Prototype Semantic Infrastructure for Automated Small Molecule Classification
and Annotation in Lipidomics},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {303},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-303},
doi = {10.1186/1471-2105-12-303},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChepelevRKLDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChiH11,
author = {Xiaoxiao Chi and
Jingyu Hou},
title = {An Iterative Approach of Protein Function Prediction},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {437},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-437},
doi = {10.1186/1471-2105-12-437},
timestamp = {Wed, 29 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChiH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChiangCQSC11,
author = {Gen{-}Tao Chiang and
Peter Clapham and
Guoying Qi and
Kevin Sale and
Guy Coates},
title = {Implementing a genomic data management system using iRODS in Wellcome
Trust Sanger Institute},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {361},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-361},
doi = {10.1186/1471-2105-12-361},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChiangCQSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChipmanS11,
author = {Kyle C. Chipman and
Ambuj K. Singh},
title = {Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling
eQTL Datasets},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {7},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-7},
doi = {10.1186/1471-2105-12-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChipmanS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChishamWLSP11,
author = {Brandon Chisham and
Ben Wright and
Trung Le and
Tran Cao Son and
Enrico Pontelli},
title = {CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {98},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-98},
doi = {10.1186/1471-2105-12-98},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChishamWLSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChitalePK11,
author = {Meghana Chitale and
Shriphani Palakodety and
Daisuke Kihara},
title = {Quantification of Protein Group Coherence and Pathway Assignment Using
Functional Association},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {373},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-373},
doi = {10.1186/1471-2105-12-373},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChitalePK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChungSM11,
author = {Ren{-}Hua Chung and
Michael A. Schmidt and
Eden R. Martin},
title = {{CAPL:} an efficient association software package using family and
case-control data and accounting for population stratification},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {201},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-201},
doi = {10.1186/1471-2105-12-201},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChungSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CieslikM11,
author = {Marcin Cieslik and
Cameron Mura},
title = {A lightweight, flow-based toolkit for parallel and distributed bioinformatics
pipelines},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {61},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-61},
doi = {10.1186/1471-2105-12-61},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CieslikM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ClarkV11,
author = {Sangaalofa T. Clark and
Wynand S. Verwoerd},
title = {A systems approach to identifying correlated gene targets for the
loss of colour pigmentation in plants},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {343},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-343},
doi = {10.1186/1471-2105-12-343},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ClarkV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ClementeJV11,
author = {Jos{\'{e}} Carlos Clemente and
Jesper Jansson and
Gabriel Valiente},
title = {Flexible taxonomic assignment of ambiguous sequencing reads},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {8},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-8},
doi = {10.1186/1471-2105-12-8},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ClementeJV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CohenGEB11,
author = {Raphael Cohen and
Avitan Gefen and
Michael Elhadad and
Ohad S. Birk},
title = {Clinical Synopsis Search in {OMIM}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {65},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-65},
doi = {10.1186/1471-2105-12-65},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CohenGEB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CookeSKDW11,
author = {Emma J. Cooke and
Richard S. Savage and
Paul D. W. Kirk and
Robert Darkins and
David L. Wild},
title = {Bayesian hierarchical clustering for microarray time series data with
replicates and outlier measurements},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {399},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-399},
doi = {10.1186/1471-2105-12-399},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CookeSKDW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CorreaG11,
author = {Elon Santos Correa and
Royston Goodacre},
title = {A genetic algorithm-Bayesian network approach for the analysis of
metabolomics and spectroscopic data: application to the rapid detection
of Bacillus spores and identification of Bacillus species},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {33},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-33},
doi = {10.1186/1471-2105-12-33},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CorreaG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CradickAIBM11,
author = {Thomas J. Cradick and
Giovanna Ambrosini and
Christian Iseli and
Philipp Bucher and
Anton P. McCaffrey},
title = {ZFN-Site searches genomes for zinc finger nuclease target sites and
off-target sites},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {152},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-152},
doi = {10.1186/1471-2105-12-152},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CradickAIBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CresawnBDJHH11,
author = {Steven G. Cresawn and
Matt Bogel and
Nathan Day and
Deborah Jacobs{-}Sera and
Roger W. Hendrix and
Graham F. Hatfull},
title = {Phamerator: a bioinformatic tool for comparative bacteriophage genomics},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {395},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-395},
doi = {10.1186/1471-2105-12-395},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CresawnBDJHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CuiDJW11,
author = {Jike Cui and
Todd F. DeLuca and
Jae{-}Yoon Jung and
Dennis P. Wall},
title = {Phylogenetically informed logic relationships improve detection of
biological network organization},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {476},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-476},
doi = {10.1186/1471-2105-12-476},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CuiDJW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CuiMCZ11,
author = {Jian Cui and
Xuepo Ma and
Long Chen and
Jianqiu Zhang},
title = {{SCFIA:} {A} Statistical Corresponding Feature Identification Algorithm
for {LC/MS}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {439},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-439},
doi = {10.1186/1471-2105-12-439},
timestamp = {Mon, 17 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CuiMCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CuleVI11,
author = {Erika Cule and
Paolo Vineis and
Maria De Iorio},
title = {Significance testing in ridge regression for genetic data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {372},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-372},
doi = {10.1186/1471-2105-12-372},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CuleVI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DabdoubRJ11,
author = {Shareef Dabdoub and
William C. Ray and
Sheryl S. Justice},
title = {{FIND:} {A} new software tool and development platform for enhanced
multicolor flow analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {145},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-145},
doi = {10.1186/1471-2105-12-145},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DabdoubRJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DailyPRXB11,
author = {Kenneth Daily and
Vishal R. Patel and
Paul Rigor and
Xiaohui Xie and
Pierre Baldi},
title = {MotifMap: integrative genome-wide maps of regulatory motif sites for
model species},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {495},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-495},
doi = {10.1186/1471-2105-12-495},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DailyPRXB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DanilukL11,
author = {Pawel Daniluk and
Bogdan Lesyng},
title = {A novel method to compare protein structures using local descriptors},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {344},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-344},
doi = {10.1186/1471-2105-12-344},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DanilukL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DarbyJWH11,
author = {Brian J. Darby and
Kenneth L. Jones and
David Wheeler and
Michael A. Herman},
title = {Normalization and centering of array-based heterologous genome hybridization
between species of unknown or unequal divergence},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {183},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-183},
doi = {10.1186/1471-2105-12-183},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DarbyJWH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DavidMLMB11,
author = {L{\'{a}}szl{\'{o}} D{\'{a}}vid and
Sayed{-}Amir Marashi and
Abdelhalim Larhlimi and
Bettina Mieth and
Alexander Bockmayr},
title = {{FFCA:} a feasibility-based method for flux coupling analysis of metabolic
networks},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {236},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-236},
doi = {10.1186/1471-2105-12-236},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DavidMLMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DayMCLCHKKLM11,
author = {Roger S. Day and
Kevin K. McDade and
Uma R. Chandran and
Alex Lisovich and
Thomas P. Conrads and
Brian L. Hood and
Vs Kumar Kolli and
David Kirchner and
Tracy Litzi and
G. Larry Maxwell},
title = {Identifier mapping performance for integrating transcriptomics and
proteomics experimental results},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {213},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-213},
doi = {10.1186/1471-2105-12-213},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DayMCLCHKKLM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Defoin-PlatelHLPHRS11,
author = {Michael Defoin{-}Platel and
Matthew Morritt Hindle and
Artem Lysenko and
Stephen J. Powers and
Dimah Z. Habash and
Christopher J. Rawlings and
Mansoor A. S. Saqi},
title = {{AIGO:} Towards a unified framework for the Analysis and the Inter-comparison
of {GO} functional annotations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {431},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-431},
doi = {10.1186/1471-2105-12-431},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Defoin-PlatelHLPHRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DehouckKGR11,
author = {Yves Dehouck and
Jean Marc Kwasigroch and
Dimitri Gilis and
Marianne Rooman},
title = {PoPMuSiC 2.1 : a web server for the estimation of protein stability
changes upon mutation and sequence optimality},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {151},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-151},
doi = {10.1186/1471-2105-12-151},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DehouckKGR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Demir-KavukKAK11,
author = {Ozgur Demir{-}Kavuk and
Mayumi Kamada and
Tatsuya Akutsu and
Ernst{-}Walter Knapp},
title = {Prediction using step-wise L1, {L2} regularization and feature selection
for small data sets with large number of features},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {412},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-412},
doi = {10.1186/1471-2105-12-412},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Demir-KavukKAK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Deng11,
author = {Xutao Deng},
title = {SeqGene: a comprehensive software solution for mining exome- and transcriptome-
sequencing data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {267},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-267},
doi = {10.1186/1471-2105-12-267},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Deng11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DengC11,
author = {Xin Deng and
Jianlin Cheng},
title = {MSACompro: protein multiple sequence alignment using predicted secondary
structure, solvent accessibility, and residue-residue contacts},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {472},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-472},
doi = {10.1186/1471-2105-12-472},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DengC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DenielouSBV11,
author = {Yves{-}Pol Deni{\'{e}}lou and
Marie{-}France Sagot and
Fr{\'{e}}d{\'{e}}ric Boyer and
Alain Viari},
title = {Bacterial syntenies: an exact approach with gene quorum},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {193},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-193},
doi = {10.1186/1471-2105-12-193},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DenielouSBV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DereeperNCBDPRT11,
author = {Alexis Dereeper and
St{\'{e}}phane Nicolas and
Loic Le Cunff and
Roberto Bacilieri and
Agnes Doligez and
Jean{-}Pierre Peros and
Manuel Ruiz and
Patrice This},
title = {SNiPlay: a web-based tool for detection, management and analysis of
SNPs. Application to grapevine diversity projects},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {134},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-134},
doi = {10.1186/1471-2105-12-134},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DereeperNCBDPRT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeunWBAM11,
author = {Katrijn Van Deun and
Tom F. Wilderjans and
Robert A. van den Berg and
Anestis Antoniadis and
Iven Van Mechelen},
title = {A flexible framework for sparse simultaneous component based data
integration},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {448},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-448},
doi = {10.1186/1471-2105-12-448},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DeunWBAM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeusCSMMLFA11,
author = {Helena F. Deus and
Miria C. Correa and
Romesh Stanislaus and
Maria Miragaia and
Wolfgang Maass and
Herm{\'{\i}}nia de Lencastre and
Ronan Fox and
Jonas S. Almeida},
title = {{S3QL:} {A} distributed domain specific language for controlled semantic
integration of life sciences data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {285},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-285},
doi = {10.1186/1471-2105-12-285},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DeusCSMMLFA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Diaz-DiazA11,
author = {Norberto D{\'{\i}}az{-}D{\'{\i}}az and
Jes{\'{u}}s S. Aguilar{-}Ruiz},
title = {GO-based Functional Dissimilarity of Gene Sets},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {360},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-360},
doi = {10.1186/1471-2105-12-360},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Diaz-DiazA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DingZG11,
author = {Jiandong Ding and
Shuigeng Zhou and
Jihong Guan},
title = {miRFam: an effective automatic miRNA classification method based on
n-grams and a multiclass {SVM}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {216},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-216},
doi = {10.1186/1471-2105-12-216},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DingZG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DinhRK11,
author = {Hieu Dinh and
Sanguthevar Rajasekaran and
Vamsi Kundeti},
title = {{PMS5:} an efficient exact algorithm for the (l, d)-motif finding
problem},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {410},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-410},
doi = {10.1186/1471-2105-12-410},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DinhRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DinovTMPLZEPGKCHAKT11,
author = {Ivo D. Dinov and
Federica Torri and
Fabio Macciardi and
Petros Petrosyan and
Zhizhong Liu and
Alen Zamanyan and
Paul R. Eggert and
Jonathan Pierce and
Alex Genco and
James A. Knowles and
Andrew P. Clark and
John D. Van Horn and
Joseph Ames and
Carl Kesselman and
Arthur W. Toga},
title = {Applications of the Pipeline Environment for Visual Informatics and
Genomics Computations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {304},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-304},
doi = {10.1186/1471-2105-12-304},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DinovTMPLZEPGKCHAKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DohertyNKRHSR11,
author = {Kathleen M. Doherty and
Priyanka Nakka and
Bracken M. King and
Soo{-}Yon Rhee and
Susan P. Holmes and
Robert W. Shafer and
Mala L. Radhakrishnan},
title = {A multifaceted analysis of {HIV-1} protease multidrug resistance phenotypes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {477},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-477},
doi = {10.1186/1471-2105-12-477},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DohertyNKRHSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DomanovaBMBKHB11,
author = {Olga Domanova and
Stefan Borbe and
Stefanie Muhlfeld and
Martin Becker and
Ralf Kubitz and
Dieter H{\"{a}}ussinger and
Thomas Berlage},
title = {Toponomics method for the automated quantification of membrane protein
translocation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {370},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-370},
doi = {10.1186/1471-2105-12-370},
timestamp = {Tue, 22 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DomanovaBMBKHB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DottoriniSMMC11,
author = {Tania Dottorini and
Nicola Senin and
Giorgio Mazzoleni and
Kalle Magnusson and
Andrea Crisanti},
title = {Gepoclu: a software tool for identifying and analyzing gene positional
clusters in large-scale gene expression analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {34},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-34},
doi = {10.1186/1471-2105-12-34},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DottoriniSMMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DoyleMFTM11,
author = {Scott Doyle and
James Monaco and
Michael D. Feldman and
John Tomaszewski and
Anant Madabhushi},
title = {An Active Learning Based Classification Strategy for the Minority
Class Problem: Application to Histopathology Annotation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {424},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-424},
doi = {10.1186/1471-2105-12-424},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DoyleMFTM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DragievNM11,
author = {Plamen Dragiev and
Robert Nadon and
Vladimir Makarenkov},
title = {Systematic error detection in experimental high-throughput screening},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {25},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-25},
doi = {10.1186/1471-2105-12-25},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DragievNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Eckel-PassowAMKA11,
author = {Jeanette E. Eckel{-}Passow and
Elizabeth J. Atkinson and
Sooraj Maharjan and
Sharon L. R. Kardia and
Mariza de Andrade},
title = {Software comparison for evaluating genomic copy number variation for
Affymetrix 6.0 {SNP} array platform},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {220},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-220},
doi = {10.1186/1471-2105-12-220},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Eckel-PassowAMKA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EichnerZLR11,
author = {Johannes Eichner and
Georg Zeller and
Sascha Laubinger and
Gunnar R{\"{a}}tsch},
title = {Support vector machines-based identification of alternative splicing
in Arabidopsis thaliana from whole-genome tiling arrays},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {55},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-55},
doi = {10.1186/1471-2105-12-55},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EichnerZLR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EickholtDC11,
author = {Jesse Eickholt and
Xin Deng and
Jianlin Cheng},
title = {DoBo: Protein domain boundary prediction by integrating evolutionary
signals and machine learning},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {43},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-43},
doi = {10.1186/1471-2105-12-43},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EickholtDC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ExarchosERPF11,
author = {Costas P. Exarchos and
Themis P. Exarchos and
Georgios Rigas and
Costas Papaloukas and
Dimitrios I. Fotiadis},
title = {Extraction of consensus protein patterns in regions containing non-proline
\emph{cis }peptide bonds and their functional assessment},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {142},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-142},
doi = {10.1186/1471-2105-12-142},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ExarchosERPF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FaheyBMJPKSRCCFK11,
author = {Marie E. Fahey and
Melanie J. Bennett and
Cathal Mahon and
Stefanie J{\"{a}}ger and
Lars Pache and
Dhiraj Kumar and
Alex Shapiro and
Kanury Rao and
Sumit K. Chanda and
Charles S. Craik and
Alan D. Frankel and
Nevan J. Krogan},
title = {GPS-Prot: a web-based visualization platform for integrating host-pathogen
interaction data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {298},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-298},
doi = {10.1186/1471-2105-12-298},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FaheyBMJPKSRCCFK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FangLDH11,
author = {Yu{-}Ching Fang and
Po{-}Ting Lai and
Hong{-}Jie Dai and
Wen{-}Lian Hsu},
title = {MeInfoText 2.0: gene methylation and cancer relation extraction from
biomedical literature},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {471},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-471},
doi = {10.1186/1471-2105-12-471},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FangLDH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FaureSM11,
author = {Andre J. Faure and
Cathal Seoighe and
Nicola J. Mulder},
title = {Investigating the effect of paralogs on microarray gene-set analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {29},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-29},
doi = {10.1186/1471-2105-12-29},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FaureSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FengGS11,
author = {Xin Feng and
Robert Grossman and
Lincoln Stein},
title = {PeakRanger: {A} cloud-enabled peak caller for ChIP-seq data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {139},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-139},
doi = {10.1186/1471-2105-12-139},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FengGS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FernandesFROF11,
author = {Francisco Fernandes and
Paulo G. S. da Fonseca and
Lu{\'{\i}}s M. S. Russo and
Arlindo L. Oliveira and
Ana T. Freitas},
title = {Efficient alignment of pyrosequencing reads for re-sequencing applications},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {163},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-163},
doi = {10.1186/1471-2105-12-163},
timestamp = {Mon, 16 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FernandesFROF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FloresG11,
author = {Samuel Flores and
Mark B. Gerstein},
title = {Predicting protein ligand binding motions with the Conformation Explorer},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {417},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-417},
doi = {10.1186/1471-2105-12-417},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FloresG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FontesS11,
author = {Magnus Fontes and
Charlotte Soneson},
title = {The projection score - an evaluation criterion for variable subset
selection in {PCA} visualization},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {307},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-307},
doi = {10.1186/1471-2105-12-307},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FontesS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ForslundPS11,
author = {Kristoffer Forslund and
Isabella Pekkari and
Erik L. L. Sonnhammer},
title = {Domain architecture conservation in orthologs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {326},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-326},
doi = {10.1186/1471-2105-12-326},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ForslundPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FozardKBKJB11,
author = {John A. Fozard and
Glen R. Kirkham and
Lee D. K. Buttery and
John R. King and
Oliver E. Jensen and
Helen M. Byrne},
title = {Techniques for analysing pattern formation in populations of stem
cells and their progeny},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {396},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-396},
doi = {10.1186/1471-2105-12-396},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FozardKBKJB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FraccalvieriPSB11,
author = {Domenico Fraccalvieri and
Alessandro Pandini and
Fabio Stella and
Laura Bonati},
title = {Conformational and functional analysis of molecular dynamics trajectories
by Self-Organising Maps},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {158},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-158},
doi = {10.1186/1471-2105-12-158},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FraccalvieriPSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FrazeeLL11,
author = {Alyssa C. Frazee and
Ben Langmead and
Jeffrey T. Leek},
title = {ReCount: {A} multi-experiment resource of analysis-ready RNA-seq gene
count datasets},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {449},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-449},
doi = {10.1186/1471-2105-12-449},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FrazeeLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FronzaTAN11,
author = {Raffaele Fronza and
Michele Tramonti and
William R. Atchley and
Christine Nardini},
title = {Joint Analysis of Transcriptional and post- Transcriptional Data:
Searching Emergent Properties in Brain Tumor Samples},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {86},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-86},
doi = {10.1186/1471-2105-12-86},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FronzaTAN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FruehwirthMP11,
author = {Rudolf Fr{\"{u}}hwirth and
Deepak R. Mani and
Saumyadipta Pyne},
title = {Clustering with position-specific constraints on variance: Applying
redescending M-estimators to label-free {LC-MS} data analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {358},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-358},
doi = {10.1186/1471-2105-12-358},
timestamp = {Fri, 09 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FruehwirthMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FuJD11,
author = {Yao Fu and
Laura R. Jarboe and
Julie A. Dickerson},
title = {Reconstructing genome-wide regulatory network of E. coli using transcriptome
data and predicted transcription factor activities},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {233},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-233},
doi = {10.1186/1471-2105-12-233},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FuJD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GadePFBWKBSB11,
author = {Stephan Gade and
Christine Porzelius and
Maria F{\"{a}}lth and
Jan C. Brase and
Daniela Wuttig and
Ruprecht Kuner and
Harald Binder and
Holger S{\"{u}}ltmann and
Tim Bei{\ss}barth},
title = {Graph based fusion of miRNA and mRNA expression data improves clinical
outcome prediction in prostate cancer},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {488},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-488},
doi = {10.1186/1471-2105-12-488},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GadePFBWKBSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GagneurET11,
author = {Julien Gagneur and
Markus C. Elze and
Achim Tresch},
title = {Selective Phenotyping, Entropy Reduction and the Mastermind Game},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {406},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-406},
doi = {10.1186/1471-2105-12-406},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GagneurET11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GalloCP11,
author = {Cristian Andr{\'{e}}s Gallo and
Jessica Andrea Carballido and
Ignacio Ponzoni},
title = {Discovering Time-Lagged Rules from Microarray Data using Gene Profile
Classifiers},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {123},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-123},
doi = {10.1186/1471-2105-12-123},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GalloCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GalloneSAJ11,
author = {Giuseppe Gallone and
T. Ian Simpson and
J. Douglas Armstrong and
Andrew P. Jarman},
title = {Bio: : Homology: : InterologWalk - {A} Perl module to build putative
protein-protein interaction networks through interolog mapping},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {289},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-289},
doi = {10.1186/1471-2105-12-289},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GalloneSAJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaoDYW11,
author = {Hongyun Gao and
Yongchao Dou and
Jialiang Yang and
Jun Wang},
title = {New methods to measure residues coevolution in proteins},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {206},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-206},
doi = {10.1186/1471-2105-12-206},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaoDYW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaoW11,
author = {Shouguo Gao and
Xujing Wang},
title = {Quantitative utilization of prior biological knowledge in the Bayesian
network modeling of gene expression data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {359},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-359},
doi = {10.1186/1471-2105-12-359},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaoW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GauthierMF11,
author = {Franck Gauthier and
Olivier C. Martin and
Matthieu Falque},
title = {{CODA} (CrossOver Distribution Analyzer): quantitative characterization
of crossover position patterns along chromosomes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {27},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-27},
doi = {10.1186/1471-2105-12-27},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GauthierMF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeifmanR11,
author = {Nophar Geifman and
Eitan Rubin},
title = {Towards an Age-Phenome Knowledge-base},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {229},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-229},
doi = {10.1186/1471-2105-12-229},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GeifmanR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GelJJPH11,
author = {Bernat Gel and
Andrew M. Jenkinson and
Rafael C. Jim{\'{e}}nez and
Xavier Messeguer Peypoch and
Henning Hermjakob},
title = {easyDAS: Automatic creation of {DAS} servers},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {23},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-23},
doi = {10.1186/1471-2105-12-23},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GelJJPH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GhodsiLP11,
author = {Mohammadreza Ghodsi and
Bo Liu and
Mihai Pop},
title = {{DNACLUST:} accurate and efficient clustering of phylogenetic marker
genes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {271},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-271},
doi = {10.1186/1471-2105-12-271},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GhodsiLP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiannopoulouE11,
author = {Eugenia G. Giannopoulou and
Olivier Elemento},
title = {An integrated ChIP-seq analysis platform with customizable workflows},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {277},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-277},
doi = {10.1186/1471-2105-12-277},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GiannopoulouE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiannopoulouLM11,
author = {Eugenia G. Giannopoulou and
George Lepouras and
Elias S. Manolakos},
title = {Visualizing Meta-Features in Proteomic Maps},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {308},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-308},
doi = {10.1186/1471-2105-12-308},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GiannopoulouLM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Glez-PenaGRFP11,
author = {Daniel Glez{-}Pe{\~{n}}a and
Gonzalo G{\'{o}}mez{-}L{\'{o}}pez and
Miguel Reboiro{-}Jato and
Florentino Fdez{-}Riverola and
David G. Pisano},
title = {PileLine: a toolbox to handle genome position information in next-generation
sequencing studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {31},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-31},
doi = {10.1186/1471-2105-12-31},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Glez-PenaGRFP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GolugulaLMFTSM11,
author = {Abhishek Golugula and
George Lee and
Stephen R. Master and
Michael D. Feldman and
John Tomaszewski and
David W. Speicher and
Anant Madabhushi},
title = {Supervised Regularized Canonical Correlation Analysis: integrating
histologic and proteomic measurements for predicting biochemical recurrence
following prostate surgery},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {483},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-483},
doi = {10.1186/1471-2105-12-483},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GolugulaLMFTSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GongXCRLHCW11,
author = {Ting Gong and
Jianhua Xuan and
Li Chen and
Rebecca B. Riggins and
Huai Li and
Eric P. Hoffman and
Robert Clarke and
Yue Joseph Wang},
title = {Motif-guided sparse decomposition of gene expression data for regulatory
module identification},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {82},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-82},
doi = {10.1186/1471-2105-12-82},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GongXCRLHCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GonzalezRCPRCAP11,
author = {Juan R. Gonz{\'{a}}lez and
Benjamin Rodriguez{-}Santiago and
Alejandro C{\'{a}}ceres and
Roger Pique{-}Regi and
Nathaniel Rothman and
Stephen J. Chanock and
Llu{\'{\i}}s Armengol and
Luis A. P{\'{e}}rez{-}Jurado},
title = {A fast and accurate method to detect allelic genomic imbalances underlying
mosaic rearrangements using {SNP} array data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {166},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-166},
doi = {10.1186/1471-2105-12-166},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GonzalezRCPRCAP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GowerSL11,
author = {Adam C. Gower and
Avrum Spira and
Marc E. Lenburg},
title = {Discovering biological connections between experimental conditions
based on common patterns of differential gene expression},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {381},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-381},
doi = {10.1186/1471-2105-12-381},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GowerSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GreenblumESB11,
author = {Sharon I. Greenblum and
Sol Efroni and
Carl F. Schaefer and
Kenneth H. Buetow},
title = {The PathOlogist: An Automated Tool for Pathway-Centric Analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {133},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-133},
doi = {10.1186/1471-2105-12-133},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GreenblumESB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GruelLLT11,
author = {Jeremy Gruel and
Michel Le Borgne and
Nolwenn LeMeur and
Nathalie Th{\'{e}}ret},
title = {Simple Shared Motifs {(SSM)} in conserved region of promoters: a new
approach to identify co-regulation patterns},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {365},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-365},
doi = {10.1186/1471-2105-12-365},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GruelLLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuZJMC11,
author = {Haibin Gu and
Pengcheng Zhu and
Yinming Jiao and
Yijun Meng and
Ming Chen},
title = {PRIN, a predicted rice interactome network},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {161},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-161},
doi = {10.1186/1471-2105-12-161},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuZJMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GundersenKAFHS11,
author = {Sveinung Gundersen and
Mat{\'{u}}s Kalas and
Osman Abul and
Arnoldo Frigessi and
Eivind Hovig and
Geir Kjetil Sandve},
title = {Identifying elemental genomic track types and representing them uniformly},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {494},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-494},
doi = {10.1186/1471-2105-12-494},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GundersenKAFHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuntherGS11,
author = {Torsten Gunther and
Inka Gawenda and
Karl J. Schmid},
title = {phenosim - {A} software to simulate phenotypes for testing in genome-wide
association studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {265},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-265},
doi = {10.1186/1471-2105-12-265},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuntherGS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuoKLSHS11,
author = {Yufan Guo and
Anna Korhonen and
Maria Liakata and
Ilona Silins and
Johan H{\"{o}}gberg and
Ulla Stenius},
title = {A comparison and user-based evaluation of models of textual information
structure in the context of cancer risk assessment},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {69},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-69},
doi = {10.1186/1471-2105-12-69},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuoKLSHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HabierFKG11,
author = {David Habier and
Rohan L. Fernando and
Kadir Kizilkaya and
Dorian Garrick},
title = {Extension of the Bayesian Alphabet for Genomic Selection},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {186},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-186},
doi = {10.1186/1471-2105-12-186},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HabierFKG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HarmanciSM11,
author = {Arif Ozgun Harmanci and
Gaurav Sharma and
David H. Mathews},
title = {TurboFold: Iterative probabilistic estimation of secondary structures
for multiple {RNA} sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {108},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-108},
doi = {10.1186/1471-2105-12-108},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HarmanciSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HarnsomburanaGBSVS11,
author = {Jaturon Harnsomburana and
Jason M. Green and
Adrian S. Barb and
Mary L. Schaeffer and
Leszek Vincent and
Chi{-}Ren Shyu},
title = {Computable visually observed phenotype ontological framework for plants},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {260},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-260},
doi = {10.1186/1471-2105-12-260},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HarnsomburanaGBSVS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HartmannCHSS11,
author = {Anja Hartmann and
Tobias Czauderna and
Roberto Hoffmann and
Nils Stein and
Falk Schreiber},
title = {HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {148},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-148},
doi = {10.1186/1471-2105-12-148},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HartmannCHSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HasenauerWDRSA11,
author = {Jan Hasenauer and
Steffen Waldherr and
Malgorzata Doszczak and
Nicole Radde and
Peter Scheurich and
Frank Allg{\"{o}}wer},
title = {Identification of models of heterogeneous cell populations from population
snapshot data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {125},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-125},
doi = {10.1186/1471-2105-12-125},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HasenauerWDRSA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaskinsPZ11,
author = {William H. Haskins and
Konstantinos Petritis and
Jianqiu Zhang},
title = {MRCQuant- an accurate {LC/MS} relative isotopic quantification algorithm
on {TOF} instruments},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {74},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-74},
doi = {10.1186/1471-2105-12-74},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaskinsPZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeckmannSKS11,
author = {Lars{-}Henrik Heckmann and
Peter B. S{\o}rensen and
Paul Henning Krogh and
Jesper G. Sorensen},
title = {NORMA-Gene: {A} simple and robust method for qPCR normalization based
on target gene data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {250},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-250},
doi = {10.1186/1471-2105-12-250},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeckmannSKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeineLE11,
author = {John J. Heine and
Walker H. Land Jr. and
Kathleen M. Egan},
title = {Statistical learning techniques applied to epidemiology: a simulated
case-control comparison study with logistic regression},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {37},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-37},
doi = {10.1186/1471-2105-12-37},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeineLE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HempelKNK11,
author = {Sabrina Hempel and
Aneta Koseska and
Zoran Nikoloski and
J{\"{u}}rgen Kurths},
title = {Unraveling gene regulatory networks from time-resolved gene expression
data - a measures comparison study},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {292},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-292},
doi = {10.1186/1471-2105-12-292},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HempelKNK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HerbigN11,
author = {Alexander Herbig and
Kay Nieselt},
title = {nocoRNAc: Characterization of non-coding RNAs in prokaryotes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {40},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-40},
doi = {10.1186/1471-2105-12-40},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HerbigN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HermanOJLVP11,
author = {Dorota Herman and
David Ochoa and
David de Juan and
Daniel Lopez and
Alfonso Valencia and
Florencio Pazos},
title = {Selection of organisms for the co-evolution-based study of protein
interactions},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {363},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-363},
doi = {10.1186/1471-2105-12-363},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HermanOJLVP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HessWQISP11,
author = {Kenneth R. Hess and
Caimiao Wei and
Yuan Qi and
Takayuki Iwamoto and
W. Fraser Symmans and
Lajos Pusztai},
title = {Lack of sufficiently strong informative features limits the potential
of gene expression analysis as predictive tool for many clinical classification
problems},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {463},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-463},
doi = {10.1186/1471-2105-12-463},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HessWQISP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HillAMKS11,
author = {Jonathon T. Hill and
Keith R. Anderson and
Teresa L. Mastracci and
Klaus H. Kaestner and
Lori Sussel},
title = {Novel computational analysis of protein binding microarray data identifies
direct targets of Nkx2.2 in the pancreas},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {62},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-62},
doi = {10.1186/1471-2105-12-62},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HillAMKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HinkelmannBGMBVL11,
author = {Franziska Hinkelmann and
Madison Brandon and
Bonny Guang and
Rustin McNeill and
Grigoriy Blekherman and
Alan Veliz{-}Cuba and
Reinhard C. Laubenbacher},
title = {{ADAM:} Analysis of Discrete Models of Biological Systems Using Computer
Algebra},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {295},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-295},
doi = {10.1186/1471-2105-12-295},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HinkelmannBGMBVL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoCHCCH11,
author = {Shinn{-}Ying Ho and
Chih{-}Yuan Chao and
Hui{-}Ling Huang and
Tzai{-}Wen Chiu and
Phasit Charoenkwan and
Eric Hwang},
title = {NeurphologyJ: an automatic neuronal morphology quantification method
and its application in pharmacological discovery},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {230},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-230},
doi = {10.1186/1471-2105-12-230},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HoCHCCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoltY11,
author = {Carson Holt and
Mark Yandell},
title = {{MAKER2:} an annotation pipeline and genome-database management tool
for second-generation genome projects},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {491},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-491},
doi = {10.1186/1471-2105-12-491},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HoltY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoltgreweEWR11,
author = {Manuel Holtgrewe and
Anne{-}Katrin Emde and
David Weese and
Knut Reinert},
title = {A Novel And Well-Defined Benchmarking Method For Second Generation
Read Mapping},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {210},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-210},
doi = {10.1186/1471-2105-12-210},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HoltgreweEWR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoppeHGGH11,
author = {Andreas Hoppe and
Sabrina Hoffmann and
Andreas Gerasch and
Christoph Gille and
Hermann{-}Georg Holzh{\"{u}}tter},
title = {{FASIMU:} flexible software for flux-balance computation series in
large metabolic networks},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {28},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-28},
doi = {10.1186/1471-2105-12-28},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HoppeHGGH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HowerEP11,
author = {Valerie Hower and
Steven N. Evans and
Lior Pachter},
title = {Shape-based peak identification for ChIP-Seq},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {15},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-15},
doi = {10.1186/1471-2105-12-15},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HowerEP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HsiehCLW11,
author = {Wen{-}Ping Hsieh and
Tzu{-}Ming Chu and
Yu{-}Min Lin and
Russell D. Wolfinger},
title = {Kernel density weighted loess normalization improves the performance
of detection within asymmetrical data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {222},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-222},
doi = {10.1186/1471-2105-12-222},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HsiehCLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HsuCHHCLH11,
author = {Justin Bo{-}Kai Hsu and
Chih{-}Min Chiu and
Sheng{-}Da Hsu and
Wei{-}Yun Huang and
Chia{-}Hung Chien and
Tzong{-}Yi Lee and
Hsien{-}Da Huang},
title = {miRTar: an integrated system for identifying miRNA-target interactions
in Human},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {300},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-300},
doi = {10.1186/1471-2105-12-300},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HsuCHHCLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HsuPHLT11,
author = {Jeh{-}Ting Hsu and
Chien Hua Peng and
Wen{-}Ping Hsieh and
Chung{-}Yu Lan and
Chuan Yi Tang},
title = {A novel method to identify cooperative functional modules: study of
module coordination in the \emph{Saccharomyces cerevisiae }cell cycle},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {281},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-281},
doi = {10.1186/1471-2105-12-281},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HsuPHLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuFVBBPM11,
author = {Yanhui Hu and
Ian Flockhart and
Arunachalam Vinayagam and
Clemens Bergwitz and
Bonnie Berger and
Norbert Perrimon and
Stephanie E. Mohr},
title = {An Integrative Approach to Ortholog Prediction for Disease-Focused
and Other Functional Studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {357},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-357},
doi = {10.1186/1471-2105-12-357},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuFVBBPM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuSKAKM11,
author = {Ting Hu and
Nicholas A. Sinnott{-}Armstrong and
Jeff Kiralis and
Angeline S. Andrew and
Margaret R. Karagas and
Jason H. Moore},
title = {Characterizing Genetic Interactions in Human Disease Association Studies
Using Statistical Epistasis Networks},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {364},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-364},
doi = {10.1186/1471-2105-12-364},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuSKAKM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangTQH11,
author = {Wen Huang and
Naoki Takebayashi and
Yan Qi and
Michael J. Hickerson},
title = {MTML-msBayes: Approximate Bayesian comparative phylogeographic inference
from multiple taxa and multiple loci with rate heterogeneity},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-1},
doi = {10.1186/1471-2105-12-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangTQH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangW11,
author = {Yao{-}Ting Huang and
Min{-}Han Wu},
title = {Inference of Chromosome-Specific Copy Numbers Using Population Haplotypes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {194},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-194},
doi = {10.1186/1471-2105-12-194},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HufskyKJSB11,
author = {Franziska Hufsky and
L{\'{e}}on Kuchenbecker and
Katharina Jahn and
Jens Stoye and
Sebastian B{\"{o}}cker},
title = {Swiftly Computing Center Strings},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {106},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-106},
doi = {10.1186/1471-2105-12-106},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HufskyKJSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Hughes11,
author = {Joseph Hughes},
title = {TreeRipper web application: towards a fully automated optical tree
recognition software},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {178},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-178},
doi = {10.1186/1471-2105-12-178},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Hughes11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HumburgHBS11,
author = {Peter Humburg and
Chris A. Helliwell and
David W. Bulger and
Glenn Stone},
title = {ChIPseqR: Analysis of ChIP-seq Experiments},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {39},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-39},
doi = {10.1186/1471-2105-12-39},
timestamp = {Tue, 05 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HumburgHBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HurL11,
author = {Youngmi Hur and
Hyunju Lee},
title = {Wavelet-based identification of {DNA} focal genomic aberrations from
single nucleotide polymorphism arrays},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {146},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-146},
doi = {10.1186/1471-2105-12-146},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HurL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HwangKSL11,
author = {Sohyun Hwang and
Sangwoo Kim and
Heesung Shin and
Doheon Lee},
title = {Context-dependent transcriptional regulations between signal transduction
pathways},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {19},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-19},
doi = {10.1186/1471-2105-12-19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HwangKSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IacucciOMM11,
author = {Ernesto Iacucci and
Fabian Ojeda and
Bart De Moor and
Yves Moreau},
title = {Predicting Receptor-Ligand Pairs through Kernel Learning},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {336},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-336},
doi = {10.1186/1471-2105-12-336},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IacucciOMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IntosalmiMRL11,
author = {Jukka Intosalmi and
Tiina Manninen and
Keijo Ruohonen and
Marja{-}Leena Linne},
title = {Computational study of noise in a large signal transduction network},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {252},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-252},
doi = {10.1186/1471-2105-12-252},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IntosalmiMRL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IsellaRCM11,
author = {Claudio Isella and
Tommaso Renzulli and
Davide Cor{\`{a}} and
Enzo Medico},
title = {Mulcom: a multiple comparison statistical test for microarray data
in Bioconductor},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {382},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-382},
doi = {10.1186/1471-2105-12-382},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IsellaRCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Izquierdo-CarrascoSS11,
author = {Fernando Izquierdo{-}Carrasco and
Stephen A. Smith and
Alexandros Stamatakis},
title = {Algorithms, data structures, and numerics for likelihood-based phylogenetic
inference of huge trees},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {470},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-470},
doi = {10.1186/1471-2105-12-470},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Izquierdo-CarrascoSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IzzoKES11,
author = {Joseph A. Izzo and
Namhee Kim and
Shereef Elmetwaly and
Tamar Schlick},
title = {{RAG:} An Update to the RNA-As-Graphs Resource},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {219},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-219},
doi = {10.1186/1471-2105-12-219},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IzzoKES11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JanssenSSG11,
author = {Stefan Janssen and
Christian Schudoma and
Gerhard Steger and
Robert Giegerich},
title = {Lost in folding space? Comparing four variants of the thermodynamic
model for {RNA} secondary structure prediction},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {429},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-429},
doi = {10.1186/1471-2105-12-429},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JanssenSSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JeongSZKS11,
author = {Jaesik Jeong and
Xue Shi and
Xiang Zhang and
Seongho Kim and
Changyu Shen},
title = {An empirical Bayes model using a competition score for metabolite
identification in gas chromatography mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {392},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-392},
doi = {10.1186/1471-2105-12-392},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JeongSZKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JethavaBDV11,
author = {Vinay Jethava and
Chiranjib Bhattacharyya and
Devdatt P. Dubhashi and
Goutham N. Vemuri},
title = {{NETGEM:} Network Embedded Temporal GEnerative Model for gene expression
data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {327},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-327},
doi = {10.1186/1471-2105-12-327},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JethavaBDV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JhambRMSCSP11,
author = {Deepali Jhamb and
Nandini Rao and
Derek J. Milner and
Fengyu Song and
Jo Ann Cameron and
David L. Stocum and
Mathew J. Palakal},
title = {Network based transcription factor analysis of regenerating axolotl
limbs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {80},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-80},
doi = {10.1186/1471-2105-12-80},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JhambRMSCSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiSDL11,
author = {Yan Ji and
Yixiang Shi and
Guohui Ding and
Yixue Li},
title = {A new strategy for better genome assembly from very short reads},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {493},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-493},
doi = {10.1186/1471-2105-12-493},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiSDL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangNBV11,
author = {Xia Jiang and
Richard E. Neapolitan and
M. Michael Barmada and
Shyam Visweswaran},
title = {Learning genetic epistasis using Bayesian network scoring criteria},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {89},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-89},
doi = {10.1186/1471-2105-12-89},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangNBV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiaoLPPJGTNT11,
author = {Yan Jiao and
Katherine Lawler and
Gargi S. Patel and
Arnie Purushotham and
Annete F. Jones and
Anita Grigoriadis and
Andrew Tutt and
Tony C. Ng and
Andrew E. Teschendorff},
title = {{DART:} Denoising Algorithm based on Relevance network Topology improves
molecular pathway activity inference},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {403},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-403},
doi = {10.1186/1471-2105-12-403},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JiaoLPPJGTNT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Jimeno-YepesMA11,
author = {Antonio Jos{\'{e}} Jimeno{-}Yepes and
Bridget T. McInnes and
Alan R. Aronson},
title = {Exploiting MeSH indexing in {MEDLINE} to generate a data set for word
sense disambiguation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {223},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-223},
doi = {10.1186/1471-2105-12-223},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Jimeno-YepesMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JonesKB11,
author = {Martin O. Jones and
Georgios D. Koutsovoulos and
Mark L. Blaxter},
title = {iPhy: an integrated phylogenetic workbench for supermatrix analyses},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {30},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-30},
doi = {10.1186/1471-2105-12-30},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JonesKB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JungFB11,
author = {Klaus Jung and
Tim Friede and
Tim Bei{\ss}barth},
title = {Reporting {FDR} analogous confidence intervals for the log fold change
of differentially expressed genes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {288},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-288},
doi = {10.1186/1471-2105-12-288},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JungFB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JungM11,
author = {Sang{-}Kyu Jung and
Karen McDonald},
title = {Visual Gene Developer: a fully programmable bioinformatics software
for synthetic gene optimization},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {340},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-340},
doi = {10.1186/1471-2105-12-340},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JungM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KadotaS11,
author = {Koji Kadota and
Kentaro Shimizu},
title = {Evaluating methods for ranking differentially expressed genes applied
to MicroArray Quality Control data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {227},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-227},
doi = {10.1186/1471-2105-12-227},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KadotaS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KalaitzisL11,
author = {Alfredo A. Kalaitzis and
Neil D. Lawrence},
title = {A Simple Approach to Ranking Differentially Expressed Gene Expression
Time Courses through Gaussian Process Regression},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {180},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-180},
doi = {10.1186/1471-2105-12-180},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KalaitzisL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KallioVOHM11,
author = {Aleksi Kallio and
Niko Vuokko and
Markus Ojala and
Niina Haiminen and
Heikki Mannila},
title = {Randomization techniques for assessing the significance of gene periodicity
results},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {330},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-330},
doi = {10.1186/1471-2105-12-330},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KallioVOHM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KammersLHSR11,
author = {Kai Kammers and
Michel Lang and
Jan G. Hengstler and
Marcus Schmidt and
J{\"{o}}rg Rahnenf{\"{u}}hrer},
title = {Survival models with preclustered gene groups as covariates},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {478},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-478},
doi = {10.1186/1471-2105-12-478},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KammersLHSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KandaswamyPHKM11,
author = {Krishna Kumar Kandaswamy and
Ganesan Pugalenthi and
Mehrnaz Khodam Hazrati and
Kai{-}Uwe Kalies and
Thomas Martinetz},
title = {BLProt: Prediction of bioluminescent proteins based on Support Vector
Machine and ReliefF feature selection},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {345},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-345},
doi = {10.1186/1471-2105-12-345},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KandaswamyPHKM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KanoBGSBHCVRHKBLPPMANPORRSCKPOT11,
author = {Yoshinobu Kano and
Jari Bj{\"{o}}rne and
Filip Ginter and
Tapio Salakoski and
Ekaterina Buyko and
Udo Hahn and
K. Bretonnel Cohen and
Karin Verspoor and
Christophe Roeder and
Lawrence E. Hunter and
Halil Kilicoglu and
Sabine Bergler and
Sofie Van Landeghem and
Thomas Van Parys and
Yves Van de Peer and
Makoto Miwa and
Sophia Ananiadou and
Mariana L. Neves and
Alberto D. Pascual{-}Montano and
Arzucan {\"{O}}zg{\"{u}}r and
Dragomir R. Radev and
Sebastian Riedel and
Rune S{\ae}tre and
Hong{-}Woo Chun and
Jin{-}Dong Kim and
Sampo Pyysalo and
Tomoko Ohta and
Jun'ichi Tsujii},
title = {U-Compare bio-event meta-service: compatible BioNLP event extraction
services},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {481},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-481},
doi = {10.1186/1471-2105-12-481},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KanoBGSBHCVRHKBLPPMANPORRSCKPOT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KarpikovRG11,
author = {Alexander Karpikov and
Joel S. Rozowsky and
Mark Gerstein},
title = {Tiling array data analysis: a multiscale approach using wavelets},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {57},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-57},
doi = {10.1186/1471-2105-12-57},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KarpikovRG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KennedyUCCM11,
author = {Ryan C. Kennedy and
Maria F. Unger and
Scott Christley and
Frank H. Collins and
Gregory R. Madey},
title = {An automated homology-based approach for identifying transposable
elements},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {130},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-130},
doi = {10.1186/1471-2105-12-130},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KennedyUCCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Kiiveri11,
author = {Harri T. Kiiveri},
title = {Multivariate analysis of microarray data: differential expression
and differential connection},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {42},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-42},
doi = {10.1186/1471-2105-12-42},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Kiiveri11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KilicogluRFR11,
author = {Halil Kilicoglu and
Graciela Rosemblat and
Marcelo Fiszman and
Thomas C. Rindflesch},
title = {Constructing a semantic predication gold standard from the biomedical
literature},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {486},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-486},
doi = {10.1186/1471-2105-12-486},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KilicogluRFR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimBPGD11,
author = {Hyunsoo Kim and
Yingtao Bi and
Sharmistha Pal and
Ravi Gupta and
Ramana V. Davuluri},
title = {IsoformEx: Isoform level gene expression estimation using weighted
non-negative least squares from mRNA-Seq data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {305},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-305},
doi = {10.1186/1471-2105-12-305},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimBPGD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimKFZ11,
author = {Seongho Kim and
Imhoi Koo and
Aiqin Fang and
Xiang Zhang},
title = {Smith-Waterman Peak Alignment for Comprehensive Two-dimensional Gas
Chromatography Mass Spectrometry},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {235},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-235},
doi = {10.1186/1471-2105-12-235},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimKFZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimLALKTGJAWJHPWN11,
author = {Su Yeon Kim and
Kirk E. Lohmueller and
Anders Albrechtsen and
Yingrui Li and
Thorfinn Korneliussen and
Geng Tian and
Niels Grarup and
Tao Jiang and
Gitte Andersen and
Daniel Witte and
Torben J{\o}rgensen and
Torben Hansen and
Oluf Pedersen and
Jun Wang and
Rasmus Nielsen},
title = {Estimation of allele frequency and association mapping using next-generation
sequencing data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {231},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-231},
doi = {10.1186/1471-2105-12-231},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimLALKTGJAWJHPWN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimPJKO11,
author = {Jihoon Kim and
Kiltesh Patel and
Hyunchul Jung and
Winston Patrick Kuo and
Lucila Ohno{-}Machado},
title = {AnyExpress: Integrated toolkit for analysis of cross-platform gene
expression data using a fast interval matching algorithm},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {75},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-75},
doi = {10.1186/1471-2105-12-75},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimPJKO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KirchnerG11,
author = {Donata K. Kirchner and
Peter G{\"{u}}ntert},
title = {Objective identification of residue ranges for the superposition of
protein structures},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {170},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-170},
doi = {10.1186/1471-2105-12-170},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KirchnerG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KnappGRS11,
author = {Bernhard Knapp and
Verena Giczi and
Reiner Ribarics and
Wolfgang Schreiner},
title = {PeptX: Using Genetic Algorithms to optimize peptides for {MHC} binding},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {241},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-241},
doi = {10.1186/1471-2105-12-241},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KnappGRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KnappRKMKBEREBK11,
author = {Bettina Knapp and
Ilka Rebhan and
Anil Kumar and
Petr Matula and
Narsis Aftab Kiani and
Marco Binder and
Holger Erfle and
Karl Rohr and
Roland Eils and
Ralf Bartenschlager and
Lars Kaderali},
title = {Normalizing for individual cell population context in the analysis
of high-content cellular screens},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {485},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-485},
doi = {10.1186/1471-2105-12-485},
timestamp = {Thu, 06 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KnappRKMKBEREBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KnijnenburgLRBS11,
author = {Theo A. Knijnenburg and
Jake Lin and
Hector Rovira and
John Boyle and
Ilya Shmulevich},
title = {{EPEPT:} {A} web service for enhanced P-value estimation in permutation
tests},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {411},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-411},
doi = {10.1186/1471-2105-12-411},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KnijnenburgLRBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KoW11,
author = {Daijin Ko and
Brad Windle},
title = {Enriching for Correct Prediction of Biological Processes Using a Combination
of Diverse Classifiers},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {189},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-189},
doi = {10.1186/1471-2105-12-189},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KoW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KohlerBMCSSGR11,
author = {Sebastian K{\"{o}}hler and
Sebastian Bauer and
Chris Mungall and
Gabriele Carletti and
Cynthia L. Smith and
Paul N. Schofield and
Georgios V. Gkoutos and
Peter N. Robinson},
title = {Improving ontologies by automatic reasoning and evaluation of logical
definitions},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {418},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-418},
doi = {10.1186/1471-2105-12-418},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KohlerBMCSSGR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KonietznyDM11,
author = {Sebastian G. A. Konietzny and
Laura Dietz and
Alice Carolyn McHardy},
title = {Inferring functional modules of protein families with probabilistic
topic models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {141},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-141},
doi = {10.1186/1471-2105-12-141},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KonietznyDM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KoperwasW11,
author = {Jakub Koperwas and
Krzysztof Walczak},
title = {Tree Edit Distance for Leaf-labelled trees on free leafset and its
comparison with Frequent Subsplit dissimilarity and popular distance
measures},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {204},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-204},
doi = {10.1186/1471-2105-12-204},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KoperwasW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KoprivaF11,
author = {Ivica Kopriva and
Marko Filipovic},
title = {A mixture model with a reference-based automatic selection of components
for disease classification from protein and/or gene expression levels},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {496},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-496},
doi = {10.1186/1471-2105-12-496},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KoprivaF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrishnadevS11,
author = {Oruganty Krishnadev and
Narayanaswamy Srinivasan},
title = {AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {275},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-275},
doi = {10.1186/1471-2105-12-275},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrishnadevS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrishnamoorthyPDDGM11,
author = {Mohan Krishnamoorthy and
Pragneshkumar Patel and
Mira Dimitrijevic and
Jonathan Dietrich and
Margaret Green and
Catherine Macken},
title = {Tree Pruner: An efficient tool for selecting data from a biased genetic
database},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {51},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-51},
doi = {10.1186/1471-2105-12-51},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrishnamoorthyPDDGM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Kriston-ViziTPYLKW11,
author = {Janos Kriston{-}Vizi and
Ng Wee Thong and
Cheok Leong Poh and
Kwo Chia Yee and
Joan Sim Poh Ling and
Rachel Kraut and
Martin Wasser},
title = {Gebiss: An ImageJ Plugin for the Specification of Ground Truth and
the Performance Evaluation of 3D Segmentation Algorithms},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {232},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-232},
doi = {10.1186/1471-2105-12-232},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Kriston-ViziTPYLKW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KritikosMVK11,
author = {George D. Kritikos and
Charalampos N. Moschopoulos and
Michalis Vazirgiannis and
Sophia Kossida},
title = {Noise reduction in protein-protein interaction graphs by the implementation
of a novel weighting scheme},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {239},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-239},
doi = {10.1186/1471-2105-12-239},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KritikosMVK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuchaievSHP11,
author = {Oleksii Kuchaiev and
Aleksandar Stevanovic and
Wayne B. Hayes and
Natasa Przulj},
title = {GraphCruch 2: Software tool for network modeling, alignment and clustering},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {24},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-24},
doi = {10.1186/1471-2105-12-24},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KuchaievSHP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KumarCMEBSK11,
author = {Surendra Kumar and
Tor Carlsen and
Bj{\o}rn{-}Helge Mevik and
P{\aa}l Enger and
Rakel Blaalid and
Kamran Shalchian{-}Tabrizi and
Havard Kauserud},
title = {{CLOTU:} An online pipeline for processing and clustering of 454 amplicon
reads into OTUs followed by taxonomic annotation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {182},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-182},
doi = {10.1186/1471-2105-12-182},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KumarCMEBSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KurkiPSYJFWP11,
author = {Mitja I. Kurki and
Jussi Paananen and
Markus Storvik and
Seppo Yl{\"{a}}{-}Herttuala and
Juha E. J{\"{a}}{\"{a}}skel{\"{a}}inen and
Mikael von und zu Fraunberg and
Garry Wong and
Petri Pehkonen},
title = {{TAFFEL:} Independent Enrichment Analysis of gene sets},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {171},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-171},
doi = {10.1186/1471-2105-12-171},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KurkiPSYJFWP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LabajSK11,
author = {Pawel P. Labaj and
Peter Sykacek and
David P. Kreil},
title = {An analysis of single amino acid repeats as use case for application
specific background models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {173},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-173},
doi = {10.1186/1471-2105-12-173},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LabajSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LancasterPPCMSJTKATSTA11,
author = {W. Andrew Lancaster and
Jeremy L. Praissman and
Farris L. Poole II and
Aleksandar Cvetkovic and
Angeli L. Menon and
Joseph W. Scott and
Francis E. Jenney Jr. and
Michael P. Thorgersen and
Ewa Kalisiak and
Junefredo V. Apon and
Sunia A. Trauger and
Gary Siuzdak and
John A. Tainer and
Michael W. W. Adams},
title = {A Computational Framework for Proteome-Wide Pursuit and Prediction
of Metalloproteins using {ICP-MS} and {MS/MS} Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {64},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-64},
doi = {10.1186/1471-2105-12-64},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LancasterPPCMSJTKATSTA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LatendresseK11,
author = {Mario Latendresse and
Peter D. Karp},
title = {Web-Based Metabolic Network Visualization with a Zooming User Interface},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {176},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-176},
doi = {10.1186/1471-2105-12-176},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LatendresseK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaurilaOALOYW11,
author = {Kirsti Laurila and
Bodil Oster and
Claus L. Andersen and
Philippe Lamy and
Torben F. {\O}rntoft and
Olli Yli{-}Harja and
Carsten Wiuf},
title = {A Beta-Mixture Model for Dimensionality Reduction, Sample Classification
and Analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {215},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-215},
doi = {10.1186/1471-2105-12-215},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LaurilaOALOYW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LechnerFSMSP11,
author = {Marcus Lechner and
Sven Findei{\ss} and
Lydia Steiner and
Manja Marz and
Peter F. Stadler and
Sonja J. Prohaska},
title = {Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {124},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-124},
doi = {10.1186/1471-2105-12-124},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LechnerFSMSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeBL11,
author = {Tzong{-}Yi Lee and
Neil Arvin Breta{\~{n}}a and
Cheng{-}Tsung Lu},
title = {PlantPhos: using Maximal Dependence Decomposition to Identify Plant
Phosphorylation Sites with Substrate Site Specificity},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {261},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-261},
doi = {10.1186/1471-2105-12-261},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeBL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeKL11,
author = {Seungyeoun Lee and
Jinheum Kim and
Sunho Lee},
title = {A comparative study on gene-set analysis methods for assessing differential
expression associated with the survival phenotype},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {377},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-377},
doi = {10.1186/1471-2105-12-377},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeKL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeKLPTLP11,
author = {Seungmook Lee and
Min{-}Seok Kwon and
Hyoung{-}Joo Lee and
Young{-}Ki Paik and
Haixu Tang and
Jae K. Lee and
Taesung Park},
title = {Enhanced peptide quantification using spectral count clustering and
cluster abundance},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {423},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-423},
doi = {10.1186/1471-2105-12-423},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeKLPTLP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LehaBJ11,
author = {Andreas Leha and
Tim Bei{\ss}barth and
Klaus Jung},
title = {Sequential Interim Analyses of Survival Data in {DNA} Microarray Experiments},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {127},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-127},
doi = {10.1186/1471-2105-12-127},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LehaBJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LemaitreBCTTST11,
author = {Claire Lemaitre and
Aur{\'{e}}lien Barr{\'{e}} and
Christine Citti and
Florence Tardy and
Francois Thiaucourt and
Pascal Sirand{-}Pugnet and
Patricia Th{\'{e}}bault},
title = {A novel substitution matrix fitted to the compositional bias in Mollicutes
improves the prediction of homologous relationships},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {457},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-457},
doi = {10.1186/1471-2105-12-457},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LemaitreBCTTST11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LemonsHH11,
author = {Nathan W. Lemons and
Bin Hu and
William S. Hlavacek},
title = {Hierarchical graphs for rule-based modeling of biochemical systems},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {45},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-45},
doi = {10.1186/1471-2105-12-45},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LemonsHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeonelliDCHL11,
author = {Sabina Leonelli and
Alexander D. Diehl and
Karen R. Christie and
Midori A. Harris and
Jane Lomax},
title = {How the Gene Ontology Evolves},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {325},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-325},
doi = {10.1186/1471-2105-12-325},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeonelliDCHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LesniewskaO11,
author = {Anna Lesniewska and
Michal J. Okoniewski},
title = {rnaSeqMap: a Bioconductor package for {RNA} sequencing data exploration},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {200},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-200},
doi = {10.1186/1471-2105-12-200},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LesniewskaO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LevenstienK11,
author = {Mark A. Levenstien and
Robert J. Klein},
title = {Predicting functionally important {SNP} classes based on negative
selection},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {26},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-26},
doi = {10.1186/1471-2105-12-26},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LevenstienK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiBGSE11,
author = {Qiyuan Li and
Nicolai J. Birkbak and
Balazs Gy{\"{o}}rffy and
Zoltan Szallasi and
Aron C. Eklund},
title = {Jetset: selecting the optimal microarray probe set to represent a
gene},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {474},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-474},
doi = {10.1186/1471-2105-12-474},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiBGSE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiD11,
author = {Bo Li and
Colin N. Dewey},
title = {{RSEM:} accurate transcript quantification from RNA-Seq data with
or without a reference genome},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {323},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-323},
doi = {10.1186/1471-2105-12-323},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiEBDHSSPBRS11,
author = {Qiyuan Li and
Aron C. Eklund and
Nicolai J. Birkbak and
Christine Desmedt and
Benjamin Haibe{-}Kains and
Christos P. Sotiriou and
W. Fraser Symmans and
Lajos Pusztai and
S{\o}ren Brunak and
Andrea L. Richardson and
Zoltan Szallasi},
title = {Consistent metagenes from cancer expression profiles yield agent specific
predictors of chemotherapy response},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {310},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-310},
doi = {10.1186/1471-2105-12-310},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiEBDHSSPBRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiGCLWZLLRL11,
author = {Jiang Li and
Bingsheng Gong and
Xi Chen and
Tao Liu and
Chao Wu and
Fan Zhang and
Chunquan Li and
Xiang Li and
Shaoqi Rao and
Xia Li},
title = {DOSim: An {R} package for similarity between diseases based on Disease
Ontology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {266},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-266},
doi = {10.1186/1471-2105-12-266},
timestamp = {Fri, 05 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiGCLWZLLRL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiGHLX11,
author = {Lin Li and
Dachuan Guo and
Yangyu Huang and
Shiyong Liu and
Yi Xiao},
title = {ASPDock: protein-protein docking algorithm using atomic solvation
parameters model},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {36},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-36},
doi = {10.1186/1471-2105-12-36},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiGHLX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiHA11,
author = {Shengqiao Li and
E. James Harner and
Donald A. Adjeroh},
title = {Random {KNN} feature selection - a fast and stable alternative to
Random Forests},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {450},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-450},
doi = {10.1186/1471-2105-12-450},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiHA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiS11,
author = {Feng Li and
Fran{\c{c}}oise Seillier{-}Moiseiwitsch},
title = {Analyzing 2D Gel Images using a Two-Component Empirical Bayes Model},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {433},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-433},
doi = {10.1186/1471-2105-12-433},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiWXYYYL11,
author = {Yizhou Li and
Zhining Wen and
Jiamin Xiao and
Hui Yin and
Lezheng Yu and
Li Yang and
Menglong Li},
title = {Predicting disease-associated substitution of a single amino acid
by analyzing residue interactions},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {14},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-14},
doi = {10.1186/1471-2105-12-14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiWXYYYL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LimpitiIASWPNT11,
author = {Tulaya Limpiti and
Apichart Intarapanich and
Anunchai Assawamakin and
Philip James Shaw and
Pongsakorn Wangkumhang and
Jittima Piriyapongsa and
Chumpol Ngamphiw and
Sissades Tongsima},
title = {Study of large and highly stratified population datasets by combining
iterative pruning principal component analysis and {STRUCTURE}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {255},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-255},
doi = {10.1186/1471-2105-12-255},
timestamp = {Mon, 28 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LimpitiIASWPNT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinAPTD11,
author = {Frank P. Y. Lin and
Stephen Anthony and
Thomas M. Polasek and
Guy Tsafnat and
Matthew P. Doogue},
title = {{BICEPP:} an example-based statistical text mining method for predicting
the binary characteristics of drugs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {112},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-112},
doi = {10.1186/1471-2105-12-112},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LinAPTD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinardTPL11,
author = {Benjamin Linard and
Julie Dawn Thompson and
Olivier Poch and
Odile Lecompte},
title = {OrthoInspector: comprehensive orthology analysis and visual exploration},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {11},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-11},
doi = {10.1186/1471-2105-12-11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LinardTPL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LippincottSK11,
author = {Thomas Lippincott and
Diarmuid {\'{O}} S{\'{e}}aghdha and
Anna Korhonen},
title = {Exploring subdomain variation in biomedical language},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {212},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-212},
doi = {10.1186/1471-2105-12-212},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LippincottSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuH11,
author = {Rong Liu and
Jianjun Hu},
title = {HemeBIND: a novel method for heme binding residue prediction by combining
structural and sequence information},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {207},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-207},
doi = {10.1186/1471-2105-12-207},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuSM11,
author = {Yongchao Liu and
Bertil Schmidt and
Douglas L. Maskell},
title = {DecGPU: distributed error correction on massively parallel graphics
processing units using {CUDA} and {MPI}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {85},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-85},
doi = {10.1186/1471-2105-12-85},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuSM11a,
author = {Yongchao Liu and
Bertil Schmidt and
Douglas L. Maskell},
title = {Parallelized short read assembly of large genomes using de Bruijn
graphs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {354},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-354},
doi = {10.1186/1471-2105-12-354},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuSM11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuSO11,
author = {Zhe Liu and
Yuanyuan Shen and
Jurg Ott},
title = {Multilocus association mapping using generalized ridge logistic regression},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {384},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-384},
doi = {10.1186/1471-2105-12-384},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuSO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuV11,
author = {Shiyong Liu and
Ilya A. Vakser},
title = {{DECK:} Distance and environment-dependent, coarse-grained, knowledge-based
potentials for protein-protein docking},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {280},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-280},
doi = {10.1186/1471-2105-12-280},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWAQ11,
author = {Fenglong Liu and
Joseph White and
Corina Antonescu and
John Quackenbush},
title = {{GCOD} - GeneChip Oncology Database},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {46},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-46},
doi = {10.1186/1471-2105-12-46},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWAQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuYKL11,
author = {Liang Liu and
Lili Yu and
Venugopal Kalavacharla and
Zhanji Liu},
title = {A Bayesian model for gene family evolution},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {426},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-426},
doi = {10.1186/1471-2105-12-426},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuYKL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuZLCZC11,
author = {Qi Liu and
Han Zhou and
Lin Liu and
Xi Chen and
Ruixin Zhu and
Zhi{-}Wei Cao},
title = {Multi-target {QSAR} Modelling in the Analysis and Design of {HIV-HCV}
Co-Inhibitors : An In-silico Study},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {294},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-294},
doi = {10.1186/1471-2105-12-294},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuZLCZC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LloydS11,
author = {Scott Lloyd and
Quinn O. Snell},
title = {Accelerated large-scale multiple sequence alignment},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {466},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-466},
doi = {10.1186/1471-2105-12-466},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LloydS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LopezCCMP11,
author = {David L{\'{o}}pez and
David Casero and
Shawn Cokus and
Sabeeha S. Merchant and
Matteo Pellegrini},
title = {Algal Functional Annotation Tool: a web-based analysis suite to functionally
interpret large gene lists using integrated annotation and expression
data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {282},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-282},
doi = {10.1186/1471-2105-12-282},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LopezCCMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LoyekRKN11,
author = {Christian Loyek and
Nasir M. Rajpoot and
Michael Khan and
Tim W. Nattkemper},
title = {BioIMAX: {A} Web 2.0 approach for easy exploratory and collaborative
access to multivariate bioimage data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {297},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-297},
doi = {10.1186/1471-2105-12-297},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LoyekRKN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuccioK11,
author = {Eric di Luccio and
Patrice Koehl},
title = {A quality metric for homology modeling: the H-factor},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {48},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-48},
doi = {10.1186/1471-2105-12-48},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuccioK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LudwigG11,
author = {Christian Ludwig and
Ulrich L. G{\"{u}}nther},
title = {MetaboLab - advanced {NMR} data processing and analysis for metabolomics},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {366},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-366},
doi = {10.1186/1471-2105-12-366},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LudwigG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LueckingHSC11,
author = {Robert K. Luecking and
Brendan P. Hodkinson and
Alexandros Stamatakis and
Reed A. Cartwright},
title = {PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity
and Cost Scores Ordination},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {10},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-10},
doi = {10.1186/1471-2105-12-10},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LueckingHSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LunaKSCNAK11,
author = {Augustin Luna and
Evrim I. Karac and
Margot Sunshine and
Lucas Chang and
Ruth Nussinov and
Mirit I. Aladjem and
Kurt W. Kohn},
title = {A Formal {MIM} Specification and Tools for the Common Exchange of
{MIM} Diagrams: an XML-Based Format, an API, and a Validation Method},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {167},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-167},
doi = {10.1186/1471-2105-12-167},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LunaKSCNAK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LustgartenVGC11,
author = {Jonathan L. Lustgarten and
Shyam Visweswaran and
Vanathi Gopalakrishnan and
Gregory F. Cooper},
title = {Application of an efficient Bayesian discretization method to biomedical
data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {309},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-309},
doi = {10.1186/1471-2105-12-309},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LustgartenVGC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LysenkoDHTHRS11,
author = {Artem Lysenko and
Michael Defoin{-}Platel and
Keywan Hassani{-}Pak and
Jan Taubert and
Charlie Hodgman and
Christopher J. Rawlings and
Mansoor A. S. Saqi},
title = {Assessing the functional coherence of modules found in multiple-evidence
networks from Arabidopsis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {203},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-203},
doi = {10.1186/1471-2105-12-203},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LysenkoDHTHRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LysholmAP11,
author = {Fredrik Lysholm and
Bj{\"{o}}rn Andersson and
Bengt Persson},
title = {{FAAST:} Flow-space Assisted Alignment Search Tool},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {293},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-293},
doi = {10.1186/1471-2105-12-293},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LysholmAP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaSJ11,
author = {Jun Ma and
Maureen A. Sartor and
H. V. Jagadish},
title = {Appearance frequency modulated gene set enrichment testing},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {81},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-81},
doi = {10.1186/1471-2105-12-81},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaSJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MahmudS11,
author = {Md Pavel Mahmud and
Alexander Schliep},
title = {Fast {MCMC} Sampling for Hidden Markov Models to Determine Copy Number
Variations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {428},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-428},
doi = {10.1186/1471-2105-12-428},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MahmudS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MakelaLYR11,
author = {Jarno M{\"{a}}kel{\"{a}} and
Jason Lloyd{-}Price and
Olli Yli{-}Harja and
Andre S. Ribeiro},
title = {Stochastic sequence-level model of coupled transcription and translation
in prokaryotes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {121},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-121},
doi = {10.1186/1471-2105-12-121},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MakelaLYR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MallonaWE11,
author = {Izaskun Mallona and
Julia Weiss and
Marcos Egea{-}Cortines},
title = {pcrEfficiency: a Web tool for {PCR} amplification efficiency prediction},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {404},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-404},
doi = {10.1186/1471-2105-12-404},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MallonaWE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Martin11,
author = {Florian Martin},
title = {An application of kernel methods to variety identification based on
{SSR} markers genetic fingerprinting},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {177},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-177},
doi = {10.1186/1471-2105-12-177},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Martin11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MartiniRSRLC11,
author = {Paolo G. V. Martini and
Davide Risso and
Gabriele Sales and
Chiara Romualdi and
Gerolamo Lanfranchi and
Stefano Cagnin},
title = {Statistical Test of Expression Pattern (STEPath): a new strategy to
integrate gene expression data with genomic information in individual
and meta-analysis studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {92},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-92},
doi = {10.1186/1471-2105-12-92},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MartiniRSRLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McCallI11,
author = {Matthew N. McCall and
Rafael A. Irizarry},
title = {Thawing Frozen Robust Multi-array Analysis (fRMA)},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {369},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-369},
doi = {10.1186/1471-2105-12-369},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/McCallI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McCallMLHI11,
author = {Matthew N. McCall and
Peter N. Murakami and
Margus Lukk and
Wolfgang Huber and
Rafael A. Irizarry},
title = {Assessments of Affymetrix GeneChip Microarray Quality for Laboratories
and Single Samples},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {137},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-137},
doi = {10.1186/1471-2105-12-137},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/McCallMLHI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeachamBDMSP11,
author = {Frazer Meacham and
Dario Boffelli and
Joseph Dhahbi and
David I. K. Martin and
Meromit Singer and
Lior Pachter},
title = {Identification and correction of systematic error in high-throughput
sequence data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {451},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-451},
doi = {10.1186/1471-2105-12-451},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MeachamBDMSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeehanMACBMD11,
author = {Terrence F. Meehan and
Anna Maria Masci and
Amina Abdulla and
Lindsay G. Cowell and
Judith A. Blake and
Christopher J. Mungall and
Alexander D. Diehl},
title = {Logical Development of the Cell Ontology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-6},
doi = {10.1186/1471-2105-12-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeehanMACBMD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MehmoodMSWS11,
author = {Tahir Mehmood and
Harald Martens and
Solve Saebo and
Jonas Warringer and
Lars Snipen},
title = {Mining for Genotype-Phenotype Relations in Saccharomyces using Partial
Least Squares},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {318},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-318},
doi = {10.1186/1471-2105-12-318},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MehmoodMSWS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeiWZ11,
author = {Suyu Mei and
Wang Fei and
Shuigeng Zhou},
title = {Gene ontology based transfer learning for protein subcellular localization},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {44},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-44},
doi = {10.1186/1471-2105-12-44},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeiWZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MelstedP11,
author = {P{\'{a}}ll Melsted and
Jonathan K. Pritchard},
title = {Efficient counting of k-mers in {DNA} sequences using a Bloom Filter},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {333},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-333},
doi = {10.1186/1471-2105-12-333},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MelstedP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeyerKBWB11,
author = {Fernando Meyer and
Stefan Kurtz and
Rolf Backofen and
Sebastian Will and
Michael Beckstette},
title = {Structator: fast index-based search for {RNA} sequence-structure patterns},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {214},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-214},
doi = {10.1186/1471-2105-12-214},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeyerKBWB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MielePD11,
author = {Vincent Miele and
Simon Penel and
Laurent Duret},
title = {Ultra-fast sequence clustering from similarity networks with SiLiX},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {116},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-116},
doi = {10.1186/1471-2105-12-116},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MielePD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MillerCLGKSH11,
author = {Jeremy A. Miller and
Chaochao Cai and
Peter Langfelder and
Daniel H. Geschwind and
Sunil M. Kurian and
Daniel R. Salomon and
Steve Horvath},
title = {Strategies for aggregating gene expression data: The collapseRows
{R} function},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {322},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-322},
doi = {10.1186/1471-2105-12-322},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MillerCLGKSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MillerYBCLCGHHNNWN11,
author = {Andrew K. Miller and
Tommy Yu and
Randall Britten and
Mike T. Cooling and
James R. Lawson and
Dougal Cowan and
Alan Garny and
Matt D. B. Halstead and
Peter J. Hunter and
David P. Nickerson and
Geoff Nunns and
Sarala M. Wimalaratne and
Poul M. F. Nielsen},
title = {Revision history aware repositories of computational models of biological
systems},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {22},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-22},
doi = {10.1186/1471-2105-12-22},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MillerYBCLCGHHNNWN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MilnthorpeS11,
author = {Andrew T. Milnthorpe and
Mikhail Soloviev},
title = {Errors in {CGAP} xProfiler and cDNA {DGED:} the importance of library
parsing and gene selection algorithms},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {97},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-97},
doi = {10.1186/1471-2105-12-97},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MilnthorpeS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MissirianCF11,
author = {Victor Missirian and
Luca Comai and
Vladimir Filkov},
title = {Statistical Mutation Calling from Sequenced Overlapping {DNA} Pools
in {TILLING} Experiments},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {287},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-287},
doi = {10.1186/1471-2105-12-287},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MissirianCF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MiziantyZXZDUK11,
author = {Marcin J. Mizianty and
Tuo Zhang and
Bin Xue and
Yaoqi Zhou and
A. Keith Dunker and
Vladimir N. Uversky and
Lukasz A. Kurgan},
title = {In-silico prediction of disorder content using hybrid sequence representation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {245},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-245},
doi = {10.1186/1471-2105-12-245},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MiziantyZXZDUK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoffittYSPTPYW11,
author = {Richard A. Moffitt and
Qiqin Yin{-}Goen and
Todd H. Stokes and
R. Mitchell Parry and
James H. Torrance and
John H. Phan and
Andrew N. Young and
May D. Wang},
title = {caCORRECT2: Improving the accuracy and reliability of microarray data
in the presence of artifacts},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {383},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-383},
doi = {10.1186/1471-2105-12-383},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MoffittYSPTPYW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MohtashemiWPSSD11,
author = {Mojdeh Mohtashemi and
David K. Walburger and
Matthew W. Peterson and
Felicia N. Sutton and
Haley B. Skaer and
James C. Diggans},
title = {Open-Target Sparse Sensing of Biological Agents using {DNA} Microarray},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {314},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-314},
doi = {10.1186/1471-2105-12-314},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MohtashemiWPSSD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoraD11,
author = {Antonio Mora and
Ian M. Donaldson},
title = {iRefR: an {R} package to manipulate the iRefIndex consolidated protein
interaction database},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {455},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-455},
doi = {10.1186/1471-2105-12-455},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoraD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MordeletV11,
author = {Fantine Mordelet and
Jean{-}Philippe Vert},
title = {ProDiGe: PRioritization Of Disease Genes with multitask machine learning
from positive and unlabeled examples},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {389},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-389},
doi = {10.1186/1471-2105-12-389},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MordeletV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MorrisANBWSBF11,
author = {John H. Morris and
Leonard Apeltsin and
Aaron M. Newman and
Jan Baumbach and
Tobias Wittkop and
Gang Su and
Gary D. Bader and
Thomas E. Ferrin},
title = {clusterMaker: a multi-algorithm clustering plugin for Cytoscape},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {436},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-436},
doi = {10.1186/1471-2105-12-436},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MorrisANBWSBF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoughonS11,
author = {Stewart E. Moughon and
Ram Samudrala},
title = {LoCo: a novel main chain scoring function for protein structure prediction
based on local coordinates},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {368},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-368},
doi = {10.1186/1471-2105-12-368},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoughonS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MouradSL11,
author = {Rapha{\"{e}}l Mourad and
Christine Sinoquet and
Philippe Leray},
title = {A hierarchical Bayesian network approach for linkage disequilibrium
modeling and data-dimensionality reduction prior to genome-wide association
studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {16},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-16},
doi = {10.1186/1471-2105-12-16},
timestamp = {Tue, 30 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MouradSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MuellerKGED11,
author = {Laurin A. J. Mueller and
Karl G. Kugler and
Armin Graber and
Frank Emmert{-}Streib and
Matthias Dehmer},
title = {Structural Measures for Network Biology Using QuACN},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {492},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-492},
doi = {10.1186/1471-2105-12-492},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MuellerKGED11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MuppiralaHD11,
author = {Usha Muppirala and
Vasant G. Honavar and
Drena Dobbs},
title = {Predicting RNA-Protein Interactions Using Only Sequence Information},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {489},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-489},
doi = {10.1186/1471-2105-12-489},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MuppiralaHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MyasnikovaSSPS11,
author = {Ekaterina M. Myasnikova and
Svetlana Surkova and
Grigory Stein and
Andrei Pisarev and
Maria Samsonova},
title = {A regression system for estimation of errors introduced by confocal
imaging into gene expression data in situ},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {320},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-320},
doi = {10.1186/1471-2105-12-320},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MyasnikovaSSPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NalbantogluWHS11,
author = {{\"{O}}zkan U. Nalbantoglu and
Samuel F. Way and
Steven H. Hinrichs and
Khalid Sayood},
title = {RAIphy: Phylogenetic classification of metagenomics samples using
iterative refinement of relative abundance index profiles},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {41},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-41},
doi = {10.1186/1471-2105-12-41},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NalbantogluWHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NazninSE11,
author = {Farhana Naznin and
Ruhul A. Sarker and
Daryl Essam},
title = {Vertical Decomposition with Genetic Algorithm for Multiple Sequence
Alignment},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {353},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-353},
doi = {10.1186/1471-2105-12-353},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NazninSE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NeedhamHDQ11,
author = {Mark Needham and
Rui Hu and
Sandhya Dwarkadas and
Xing Qiu},
title = {Hierarchical Parallelization of Gene Differential Association Analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {374},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-374},
doi = {10.1186/1471-2105-12-374},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NeedhamHDQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NefedovS11,
author = {Alexey V. Nefedov and
Rovshan G. Sadygov},
title = {A parallel method for enumerating amino acid compositions and masses
of all theoretical peptides},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {432},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-432},
doi = {10.1186/1471-2105-12-432},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NefedovS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NelsonPERBHRNLKSCSI11,
author = {Elizabeth K. Nelson and
Britt Piehler and
Josh Eckels and
Adam Rauch and
Matthew Bellew and
Peter Hussey and
Sarah Ramsay and
Cory Nathe and
Karl Lum and
Kevin Krouse and
David Stearns and
Brian Connolly and
Tom Skillman and
Mark Igra},
title = {LabKey Server: An open source platform for scientific data integration,
analysis and collaboration},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {71},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-71},
doi = {10.1186/1471-2105-12-71},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NelsonPERBHRNLKSCSI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NewtonHW11,
author = {Richard Newton and
Jason Hinds and
Lorenz Wernisch},
title = {Empirical Bayesian models for analysing molecular serotyping microarrays},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {88},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-88},
doi = {10.1186/1471-2105-12-88},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NewtonHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NishiyamaTTPSTK11,
author = {Takeshi Nishiyama and
Kunihiko Takahashi and
Toshiro Tango and
Dalila Pinto and
Stephen W. Scherer and
Satoshi Takami and
Hirohisa Kishino},
title = {A Scan Statistic to Extract Causal Gene Clusters from Case-Control
Genome-wide Rare {CNV} Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {205},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-205},
doi = {10.1186/1471-2105-12-205},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NishiyamaTTPSTK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ObulkasimMW11,
author = {Askar Obulkasim and
Gerrit Meijer and
Mark A. van de Wiel},
title = {Stepwise classification of cancer samples using clinical and molecular
Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {422},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-422},
doi = {10.1186/1471-2105-12-422},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ObulkasimMW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OchoaLS11,
author = {Alejandro Ochoa and
Manuel Llin{\'{a}}s and
Mona Singh},
title = {Using context to improve protein domain identification},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {90},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-90},
doi = {10.1186/1471-2105-12-90},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/OchoaLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Olivera-NappaAA11,
author = {Alvaro Olivera{-}Nappa and
Barbara A. Andrews and
Juan A. Asenjo},
title = {Mutagenesis Objective Search and Selection Tool {(MOSST):} an algorithm
to predict structure-function related mutations in proteins},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {122},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-122},
doi = {10.1186/1471-2105-12-122},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Olivera-NappaAA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OndovBP11,
author = {Brian D. Ondov and
Nicholas H. Bergman and
Adam M. Phillippy},
title = {Interactive metagenomic visualization in a Web browser},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {385},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-385},
doi = {10.1186/1471-2105-12-385},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OndovBP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OnogiNM11,
author = {Akio Onogi and
Masanobu Nurimoto and
Mitsuo Morita},
title = {Characterization of a Bayesian genetic clustering algorithm based
on a Dirichlet process prior and comparison among Bayesian clustering
methods},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {263},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-263},
doi = {10.1186/1471-2105-12-263},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OnogiNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OnskogFLRH11,
author = {Jenny {\"{O}}nskog and
Eva Freyhult and
Mattias Landfors and
Patrik Ryd{\'{e}}n and
Torgeir R. Hvidsten},
title = {Classification of microarrays; synergistic effects between normalization,
gene selection and machine learning},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {390},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-390},
doi = {10.1186/1471-2105-12-390},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OnskogFLRH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OsmanbeyogluG11,
author = {Hatice U. Osmanbeyoglu and
Madhavi Ganapathiraju},
title = {N-gram analysis of 970 microbial organisms reveals presence of biological
language models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {12},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-12},
doi = {10.1186/1471-2105-12-12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OsmanbeyogluG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OverallCTTW11,
author = {Christopher C. Overall and
D. Andrew Carr and
Ehsan S. Tabari and
Kevin J. Thompson and
Jennifer W. Weller},
title = {ArrayInitiative - a tool that simplifies creating custom Affymetrix
CDFs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {136},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-136},
doi = {10.1186/1471-2105-12-136},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OverallCTTW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Page11,
author = {Roderic D. M. Page},
title = {Extracting scientific articles from a large digital archive: BioStor
and the Biodiversity Heritage Library},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {187},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-187},
doi = {10.1186/1471-2105-12-187},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Page11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PanLJLY11,
author = {Dong{-}Dong Pan and
Qizhai Li and
Ningning Jiang and
Aiyi Liu and
Kai F. Yu},
title = {Robust joint analysis allowing for model uncertainty in two-stage
genetic association studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {9},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-9},
doi = {10.1186/1471-2105-12-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PanLJLY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PanchinMASP11,
author = {Alexander Y. Panchin and
Sergey I. Mitrofanov and
Andrei Alexeevski and
Sergei A. Spirin and
Yuri V. Panchin},
title = {New Words in Human Mutagenesis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {268},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-268},
doi = {10.1186/1471-2105-12-268},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PanchinMASP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParksMB11,
author = {Donovan H. Parks and
Norman J. MacDonald and
Robert G. Beiko},
title = {Classifying short genomic fragments from novel lineages using composition
and homology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {328},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-328},
doi = {10.1186/1471-2105-12-328},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ParksMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PauletCB11,
author = {Damien Paulet and
Mireille Claustres and
Christophe B{\'{e}}roud},
title = {Hydrophobic pulses predict transmembrane helix irregularities and
channel transmembrane units},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {135},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-135},
doi = {10.1186/1471-2105-12-135},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PauletCB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PauwelsSY11,
author = {Edouard Pauwels and
V{\'{e}}ronique Stoven and
Yoshihiro Yamanishi},
title = {Predicting drug side-effect profiles: a chemical fragment-based approach},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {169},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-169},
doi = {10.1186/1471-2105-12-169},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PauwelsSY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Pavlovic-LazeticMKOMB11,
author = {Gordana Pavlovic{-}Lazetic and
Nenad S. Mitic and
Jovana J. Kovacevic and
Zoran Obradovic and
Sasa N. Malkov and
Milos V. Beljanski},
title = {Bioinformatics analysis of disordered proteins in prokaryotes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {66},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-66},
doi = {10.1186/1471-2105-12-66},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Pavlovic-LazeticMKOMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Perez-EncisoM11,
author = {Miguel P{\'{e}}rez{-}Enciso and
Ignacy Misztal},
title = {Qxpak.5: Old mixed model solutions for new genomics problems},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {202},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-202},
doi = {10.1186/1471-2105-12-202},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Perez-EncisoM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PerteaPS11,
author = {Mihaela Pertea and
Geo Pertea and
Steven L. Salzberg},
title = {Detection of Lineage-Specific Evolutionary Changes among Primate Species},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {274},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-274},
doi = {10.1186/1471-2105-12-274},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PerteaPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PhilippeSLLCR11,
author = {Nicolas Philippe and
Mika{\"{e}}l Salson and
Thierry Lecroq and
Martine L{\'{e}}onard and
Therese Commes and
Eric Rivals},
title = {Querying large read collections in main memory: a versatile data structure},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {242},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-242},
doi = {10.1186/1471-2105-12-242},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PhilippeSLLCR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PhillipsCN11,
author = {Joshua L. Phillips and
Michael E. Colvin and
Shawn D. Newsam},
title = {Validating Clustering of Molecular Dynamics Simulations Using Polymer
Models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {445},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-445},
doi = {10.1186/1471-2105-12-445},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PhillipsCN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PillmannHOHK11,
author = {Holger Pillmann and
Klas Hatje and
Florian Odronitz and
Bj{\"{o}}rn Hammesfahr and
Martin Kollmar},
title = {Predicting mutually exclusive spliced exons based on exon length,
splice site and reading frame conservation, and exon sequence homology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {270},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-270},
doi = {10.1186/1471-2105-12-270},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PillmannHOHK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PinelloBHY11,
author = {Luca Pinello and
Giosu{\`{e}} Lo Bosco and
Bret M. Hanlon and
Guo{-}Cheng Yuan},
title = {A motif-independent metric for {DNA} sequence specificity},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {408},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-408},
doi = {10.1186/1471-2105-12-408},
timestamp = {Sun, 14 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PinelloBHY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PlantEB11,
author = {Anne L. Plant and
John T. Elliott and
Talapady N. Bhat},
title = {New concepts for building vocabulary for cell image ontologies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {487},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-487},
doi = {10.1186/1471-2105-12-487},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PlantEB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PlazaJDA11,
author = {Laura Plaza and
Antonio Jos{\'{e}} Jimeno{-}Yepes and
Alberto D{\'{\i}}az and
Alan R. Aronson},
title = {Studying the correlation between different word sense disambiguation
methods and summarization effectiveness in biomedical texts},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {355},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-355},
doi = {10.1186/1471-2105-12-355},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PlazaJDA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PodpecanLMNTLKTPMG11,
author = {Vid Podpecan and
Nada Lavrac and
Igor Mozetic and
Petra Kralj Novak and
Igor Trajkovski and
Laura Langohr and
Kimmo Kulovesi and
Hannu Toivonen and
Marko Petek and
Helena Motaln and
Kristina Gruden},
title = {SegMine workflows for semantic microarray data analysis in Orange4WS},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {416},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-416},
doi = {10.1186/1471-2105-12-416},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PodpecanLMNTLKTPMG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PoissonTG11,
author = {Laila M. Poisson and
Jeremy M. G. Taylor and
Debashis Ghosh},
title = {Integrative set enrichment testing for multiple omics platforms},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {459},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-459},
doi = {10.1186/1471-2105-12-459},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PoissonTG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PonsGF11,
author = {Carles Pons and
Fabian Glaser and
Juan Fern{\'{a}}ndez{-}Recio},
title = {Prediction of protein-binding areas by small-world residue networks
and application to docking},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {378},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-378},
doi = {10.1186/1471-2105-12-378},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PonsGF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PrasadMFJY11,
author = {Rashmi Prasad and
Susan McRoy and
Nadya Frid and
Aravind K. Joshi and
Hong Yu},
title = {The Biomedical Discourse Relation Bank},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {188},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-188},
doi = {10.1186/1471-2105-12-188},
timestamp = {Mon, 20 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PrasadMFJY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PressonKYCK11,
author = {Angela P. Presson and
Namshin Kim and
Xiaofei Yan and
Irvin S. Y. Chen and
Sanggu Kim},
title = {Methodology and software to detect viral integration site hot-spots},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {367},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-367},
doi = {10.1186/1471-2105-12-367},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PressonKYCK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ProsperiPBARVSCU11,
author = {Mattia C. F. Prosperi and
Luciano Prosperi and
Alessandro Bruselles and
Isabella Abbate and
Gabriella Rozera and
Donatella Vincenti and
Maria Carmela Solmone and
Maria Rosaria Capobianchi and
Giovanni Ulivi},
title = {Combinatorial analysis and algorithms for quasispecies reconstruction
using next-generation sequencing},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-5},
doi = {10.1186/1471-2105-12-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ProsperiPBARVSCU11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QiaoZBS11,
author = {Yantao Qiao and
Hong Zhang and
Dongbo Bu and
Shiwei Sun},
title = {{PI:} An open-source software package for validation of the {SEQUEST}
result and visualization of mass spectrum},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {234},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-234},
doi = {10.1186/1471-2105-12-234},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QiaoZBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QuesterS11,
author = {Susanne Quester and
Dietmar Schomburg},
title = {EnzymeDetector: an integrated enzyme function prediction tool and
database},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {376},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-376},
doi = {10.1186/1471-2105-12-376},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QuesterS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QuinceLDT11,
author = {Christopher Quince and
Anders Lanz{\'{e}}n and
Russell J. Davenport and
Peter J. Turnbaugh},
title = {Removing Noise From Pyrosequenced Amplicons},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {38},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-38},
doi = {10.1186/1471-2105-12-38},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/QuinceLDT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RakovskiWMLS11,
author = {Cyril Rakovski and
Daniel J. Weisenberger and
Paul Marjoram and
Peter W. Laird and
Kimberly D. Siegmund},
title = {Modeling measurement error in tumor characterization studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {284},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-284},
doi = {10.1186/1471-2105-12-284},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RakovskiWMLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RamirezKT11,
author = {Sergio Ram{\'{\i}}rez and
Tor Johan Mikael Karlsson and
Oswaldo Trelles},
title = {{MAPI:} towards the integrated exploitation of bioinformatics Web
Services},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {419},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-419},
doi = {10.1186/1471-2105-12-419},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RamirezKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RangarajanSYCHOFDISCSM11,
author = {Arun Rangarajan and
Tim Schedl and
Karen Yook and
Juancarlos Chan and
Stephen Haenel and
Lolly Otis and
Sharon Faelten and
Tracey DePellegrin{-}Connelly and
Ruth Isaacson and
Marek S. Skrzypek and
J. Michael Cherry and
Paul W. Sternberg and
Hans{-}Michael M{\"{u}}ller},
title = {Toward an interactive article: integrating journals and biological
databases},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {175},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-175},
doi = {10.1186/1471-2105-12-175},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RangarajanSYCHOFDISCSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RazickMMBD11,
author = {Sabry Razick and
Antonio Mora and
Katerina Michalickova and
Paul Boddie and
Ian M. Donaldson},
title = {iRefScape. {A} Cytoscape plug-in for visualization and data mining
of protein interaction data from iRefIndex},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {388},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-388},
doi = {10.1186/1471-2105-12-388},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RazickMMBD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RegadMC11,
author = {Leslie Regad and
Juliette Martin and
Anne{-}Claude Camproux},
title = {Dissecting protein loops with a statistical scalpel suggests a functional
implication of some structural motifs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {247},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-247},
doi = {10.1186/1471-2105-12-247},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RegadMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RenWWZD11,
author = {Xian{-}Wen Ren and
Yong{-}Cui Wang and
Yong Wang and
Xiang{-}Sun Zhang and
Nai{-}Yang Deng},
title = {Improving accuracy of protein-protein interaction prediction by considering
the converse problem for sequence representation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {409},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-409},
doi = {10.1186/1471-2105-12-409},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RenWWZD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RenardLKRRTCS11,
author = {Bernhard Y. Renard and
Martin L{\"{o}}wer and
Yvonne Kuhne and
Ulf Reimer and
Andree Rothermel and
{\"{O}}zlem T{\"{u}}reci and
John C. Castle and
Ugur Sahin},
title = {rapmad: Robust Analysis of Peptide Microarray Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {324},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-324},
doi = {10.1186/1471-2105-12-324},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RenardLKRRTCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Restrepo-MontoyaPNPP11,
author = {Daniel Restrepo{-}Montoya and
Camilo Pino and
Luis F. Ni{\~{n}}o and
Manuel{-}Elkin Patarroyo and
Manuel A. Patarroyo},
title = {NClassG+: {A} classifier for non-classically secreted Gram-positive
bacterial proteins},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {21},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-21},
doi = {10.1186/1471-2105-12-21},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Restrepo-MontoyaPNPP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RevannaCBD11,
author = {Kashi Vishwanath Revanna and
Chi{-}Chen Chiu and
Ezekiel Bierschank and
Qunfeng Dong},
title = {{GSV:} {A} Web-based Genome Synteny Viewer for Customized Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {316},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-316},
doi = {10.1186/1471-2105-12-316},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RevannaCBD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Reyes-HerreraFAM11,
author = {Paula Helena Reyes{-}Herrera and
Elisa Ficarra and
Andrea Acquaviva and
Enrico Macii},
title = {miREE: miRNA Recognition Elements Ensemble},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {454},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-454},
doi = {10.1186/1471-2105-12-454},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Reyes-HerreraFAM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RhrissorrakraiG11,
author = {Kahn Rhrissorrakrai and
Kristin C. Gunsalus},
title = {{MINE:} Module Identification in NEtworks},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {192},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-192},
doi = {10.1186/1471-2105-12-192},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RhrissorrakraiG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RissoSSD11,
author = {Davide Risso and
Katja Schwartz and
Gavin Sherlock and
Sandrine Dudoit},
title = {GC-Content Normalization for RNA-Seq Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {480},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-480},
doi = {10.1186/1471-2105-12-480},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RissoSSD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RitchieLCI11,
author = {Matthew E. Ritchie and
Ruijie Liu and
Benilton S. Carvalho and
Rafael A. Irizarry},
title = {Comparing genotyping algorithms for Illumina's Infinium whole-genome
{SNP} BeadChips},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {68},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-68},
doi = {10.1186/1471-2105-12-68},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RitchieLCI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RitzPICR11,
author = {Anna M. Ritz and
Pamela L. Paris and
Michael Ittmann and
Colin C. Collins and
Benjamin J. Raphael},
title = {Detection of recurrent rearrangement breakpoints from copy number
data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {114},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-114},
doi = {10.1186/1471-2105-12-114},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RitzPICR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RobinTHTLSM11,
author = {Xavier Robin and
Natacha Turck and
Alexandre Hainard and
Natalia Tiberti and
Fr{\'{e}}d{\'{e}}rique Lisacek and
Jean{-}Charles Sanchez and
Markus M{\"{u}}ller},
title = {pROC: an open-source package for {R} and {S+} to analyze and compare
{ROC} curves},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {77},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-77},
doi = {10.1186/1471-2105-12-77},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RobinTHTLSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RocheDR11,
author = {Benjamin Roche and
John M. Drake and
Pejman Rohani},
title = {An Agent-Based Model to study the epidemiological and evolutionary
dynamics of Influenza viruses},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {87},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-87},
doi = {10.1186/1471-2105-12-87},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RocheDR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RocheTM11,
author = {Daniel B. Roche and
Stuart J. Tetchner and
Liam J. McGuffin},
title = {FunFOLD: an improved automated method for the prediction of ligand
binding residues using 3D models of proteins},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {160},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-160},
doi = {10.1186/1471-2105-12-160},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RocheTM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Rognes11,
author = {Torbj{\o}rn Rognes},
title = {Faster Smith-Waterman database searches with inter-sequence {SIMD}
parallelisation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {221},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-221},
doi = {10.1186/1471-2105-12-221},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Rognes11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RolfeG11,
author = {P. Alexander Rolfe and
David K. Gifford},
title = {ReadDB Provides Efficient Storage for Mapped Short Reads},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {278},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-278},
doi = {10.1186/1471-2105-12-278},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RolfeG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RoskinPH11,
author = {Krishna M. Roskin and
Benedict Paten and
David Haussler},
title = {Meta-Alignment with Crumble and Prune: Partitioning very large alignment
problems for performance and parallelization},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {144},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-144},
doi = {10.1186/1471-2105-12-144},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RoskinPH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RousseauFFDB11,
author = {Mathieu Rousseau and
James Fraser and
Maria A. Ferraiuolo and
Josee Dostie and
Mathieu Blanchette},
title = {Three-dimensional modeling of chromatin structure from interaction
frequency data using Markov chain Monte Carlo sampling},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {414},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-414},
doi = {10.1186/1471-2105-12-414},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RousseauFFDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RudyV11,
author = {Jason Rudy and
Faramarz Valafar},
title = {Empirical comparison of cross-platform normalization methods for gene
expression data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {467},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-467},
doi = {10.1186/1471-2105-12-467},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RudyV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RuedaR11,
author = {Luis Rueda and
Iman Rezaeian},
title = {A Fully Automatic Gridding Method for cDNA Microarray Images},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {113},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-113},
doi = {10.1186/1471-2105-12-113},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RuedaR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RueggerVJB11,
author = {Paul M. Ruegger and
Gianluca Della Vedova and
Tao Jiang and
James Borneman},
title = {Improving Probe Set Selection for Microbial Community Analysis by
Leveraging Taxonomic Information of Training Sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {394},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-394},
doi = {10.1186/1471-2105-12-394},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RueggerVJB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RussRHBB11,
author = {Thomas A. Russ and
Cartic Ramakrishnan and
Eduard H. Hovy and
Mihail Bota and
Gully A. P. C. Burns},
title = {Knowledge Engineering Tools for Reasoning with Scientific Observations
and Interpretations: a Neural Connectivity Use Case},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {351},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-351},
doi = {10.1186/1471-2105-12-351},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RussRHBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SahooNBPMS11,
author = {Satya Sanket Sahoo and
Vinh Nguyen and
Olivier Bodenreider and
Priti Parikh and
Todd Minning and
Amit P. Sheth},
title = {A unified framework for managing provenance information in translational
research},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {461},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-461},
doi = {10.1186/1471-2105-12-461},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SahooNBPMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalazarJCHMB11,
author = {Gustavo A. Salazar and
Rafael C. Jim{\'{e}}nez and
Alexander Garc{\'{\i}}a Castro and
Henning Hermjakob and
Nicola J. Mulder and
Edwin H. Blake},
title = {{DAS} Writeback: {A} Collaborative Annotation System},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {143},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-143},
doi = {10.1186/1471-2105-12-143},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SalazarJCHMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalicruOS11,
author = {Miquel Salicru and
Jordi Ocana and
Alex S{\'{a}}nchez{-}Pla},
title = {Comparison of lists of genes based on functional profiles},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {401},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-401},
doi = {10.1186/1471-2105-12-401},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SalicruOS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalimKSC11,
author = {Hannah M. W. Salim and
Amanda M. Koire and
Nicholas A. Stover and
Andre R. O. Cavalcanti},
title = {Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser:
Analysis of the \emph{Tetrahymena thermophila }genome},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {279},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-279},
doi = {10.1186/1471-2105-12-279},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SalimKSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SandersFVBAVK11,
author = {Marijn P. A. Sanders and
Wilco W. M. Fleuren and
Stefan Verhoeven and
Sven van den Beld and
Wynand Alkema and
Jacob de Vlieg and
Jan P. G. Klomp},
title = {ss-TEA: Entropy based identification of receptor specific ligand binding
residues from a multiple sequence alignment of class {A} GPCRs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {332},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-332},
doi = {10.1186/1471-2105-12-332},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SandersFVBAVK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SandersWBMDMNLB11,
author = {William S. Sanders and
Nan Wang and
Susan M. Bridges and
Brandon M. Malone and
Yoginder S. Dandass and
Fiona M. McCarthy and
Bindu Nanduri and
Mark L. Lawrence and
Shane C. Burgess},
title = {The Proteogenomic Mapping Tool},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {115},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-115},
doi = {10.1186/1471-2105-12-115},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SandersWBMDMNLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SantosM11,
author = {Jos{\'{e}} Santos Reyes and
{\'{A}}ngel Monteagudo},
title = {Simulated evolution applied to study the genetic code optimality using
a model of codon reassignments},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {56},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-56},
doi = {10.1186/1471-2105-12-56},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SantosM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SatoTY11,
author = {Yoshiharu Sato and
Akiko Takaya and
Tomoko Yamamoto},
title = {Meta-analytic approach to the accurate prediction of secreted virulence
effectors in Gram-negative bacteria},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {442},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-442},
doi = {10.1186/1471-2105-12-442},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SatoTY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchindelmanFBYS11,
author = {Gary Schindelman and
Jolene Fernandes and
Carol Bastiani and
Karen Yook and
Paul W. Sternberg},
title = {Worm Phenotype Ontology: integrating phenotype data within and beyond
the C. elegans community},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {32},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-32},
doi = {10.1186/1471-2105-12-32},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchindelmanFBYS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmidtRPCSMS11,
author = {Matthew C. Schmidt and
Andrea M. Rocha and
Kanchana Padmanabhan and
Zhengzhang Chen and
Kathleen Scott and
James R. Mihelcic and
Nagiza F. Samatova},
title = {Efficient alpha, beta-motif Finder for Identification of Phenotype-related
Functional Modules},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {440},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-440},
doi = {10.1186/1471-2105-12-440},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchmidtRPCSMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchreinerTFS11,
author = {Eduard Schreiner and
Leonardo G. Trabuco and
Peter L. Freddolino and
Klaus Schulten},
title = {Stereochemical errors and their implications to molecular dynamics
simulations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {190},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-190},
doi = {10.1186/1471-2105-12-190},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchreinerTFS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchulzKBR11,
author = {Marcel H. Schulz and
Sebastian K{\"{o}}hler and
Sebastian Bauer and
Peter N. Robinson},
title = {Exact score distribution computation for ontological similarity searches},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {441},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-441},
doi = {10.1186/1471-2105-12-441},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchulzKBR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScottTB11,
author = {Michelle S. Scott and
Peter V. Troshin and
Geoffrey J. Barton},
title = {NoD: a Nucleolar localization sequence detector for eukaryotic and
viral proteins},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {317},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-317},
doi = {10.1186/1471-2105-12-317},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ScottTB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SeguraJF11,
author = {Joan Segura and
Pamela F. Jones and
Narcis Fernandez{-}Fuentes},
title = {Improving the prediction of protein binding sites by combining heterogeneous
data and Voronoi Diagrams},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {352},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-352},
doi = {10.1186/1471-2105-12-352},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SeguraJF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SeymourDSP11,
author = {Emily Seymour and
Rohini Damle and
Alessandro Sette and
Bjoern Peters},
title = {Cost sensitive hierarchical document classification to triage PubMed
abstracts for manual curation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {482},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-482},
doi = {10.1186/1471-2105-12-482},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SeymourDSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShangZSLYY11,
author = {Junliang Shang and
Junying Zhang and
Yan Sun and
Dan Liu and
Daojun Ye and
Yaling Yin},
title = {Performance analysis of novel methods for detecting epistasis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {475},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-475},
doi = {10.1186/1471-2105-12-475},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShangZSLYY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SheppardSEGK11,
author = {Patrick W. Sheppard and
Xiaoyun Sun and
John F. Emery and
Rona G. Giffard and
Mustafa Khammash},
title = {Quantitative characterization and analysis of the dynamic NF-kappaB
response in microglia},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {276},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-276},
doi = {10.1186/1471-2105-12-276},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SheppardSEGK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiALHK11,
author = {Fan Shi and
Gad Abraham and
Christopher Leckie and
Izhak Haviv and
Adam Kowalczyk},
title = {Meta-analysis of gene expression microarrays with missing replicates},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {84},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-84},
doi = {10.1186/1471-2105-12-84},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiALHK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiRZK11,
author = {Ping Shi and
Surajit Ray and
Qifu Zhu and
Mark A. Kon},
title = {Top Scoring Pairs for Feature Selection in Machine Learning and Applications
to Cancer Outcome Prediction},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {375},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-375},
doi = {10.1186/1471-2105-12-375},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiRZK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiZ11,
author = {Zhiao Shi and
Bing Zhang},
title = {Fast network centrality analysis using GPUs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {149},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-149},
doi = {10.1186/1471-2105-12-149},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SicotteRPDK11,
author = {Hugues Sicotte and
David N. Rider and
Gregory A. Poland and
Neelam Dhiman and
Jean{-}Pierre A. Kocher},
title = {SNPPicker: High quality tag {SNP} selection across multiple populations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {129},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-129},
doi = {10.1186/1471-2105-12-129},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SicotteRPDK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinganJCS11,
author = {Vasanth R. Singan and
Thouis R. Jones and
Kathleen M. Curran and
Jeremy C. Simpson},
title = {Dual channel rank-based intensity weighting for quantitative co-localization
of microscopy images},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {407},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-407},
doi = {10.1186/1471-2105-12-407},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SinganJCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinhaM11,
author = {Anshu Sinha and
Marianthi Markatou},
title = {A Platform for Processing Expression of Short Time Series {(PESTS)}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {13},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-13},
doi = {10.1186/1471-2105-12-13},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SinhaM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinhaMACD11,
author = {Amit U. Sinha and
Emily Merrill and
Scott A. Armstrong and
Timothy W. Clark and
Sudeshna Das},
title = {eXframe: reusable framework for storage, analysis and visualization
of genomics experiments},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {452},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-452},
doi = {10.1186/1471-2105-12-452},
timestamp = {Tue, 04 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SinhaMACD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SiposMJG11,
author = {Botond Sipos and
Tim Massingham and
Gregory E. Jordan and
Nick Goldman},
title = {PhyloSim - Monte Carlo simulation of sequence evolution in the {R}
statistical computing environment},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {104},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-104},
doi = {10.1186/1471-2105-12-104},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SiposMJG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SkinnerKVMYSHM11,
author = {Jeff Skinner and
Yuri Kotliarov and
Sudhir Varma and
Karina L. Mine and
Anatoly Yambartsev and
Richard Simon and
Yentram Huyen and
Andrey Morgun},
title = {Construct and Compare Gene Coexpression Networks with DAPfinder and
DAPview},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {286},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-286},
doi = {10.1186/1471-2105-12-286},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SkinnerKVMYSHM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SkogersonWBF11,
author = {Kirsten Skogerson and
Gert Wohlgemuth and
Dinesh K. Barupal and
Oliver Fiehn},
title = {The volatile compound BinBase mass spectral database},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {321},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-321},
doi = {10.1186/1471-2105-12-321},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SkogersonWBF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohnOLGCJ11,
author = {Insuk Sohn and
Kouros Owzar and
Johan Lim and
Stephen L. George and
Stephanie MacKey Cushman and
Sin{-}Ho Jung},
title = {Multiple Testing for Gene Sets from Microarray Experiments},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {209},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-209},
doi = {10.1186/1471-2105-12-209},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohnOLGCJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohngenCS11,
author = {Carola S{\"{o}}hngen and
Antje Chang and
Dietmar Schomburg},
title = {Development of an automatic Classification Scheme for Disease-related
Enzyme Information},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {329},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-329},
doi = {10.1186/1471-2105-12-329},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohngenCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SolvangLFBK11,
author = {Hiroko K. Solvang and
Ole Christian Lingj{\ae}rde and
Arnoldo Frigessi and
Anne{-}Lise B{\o}rresen{-}Dale and
Vessela N. Kristensen},
title = {Linear and non-linear dependencies between copy number aberrations
and mRNA expression reveal distinct molecular pathways in Breast Cancer},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {197},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-197},
doi = {10.1186/1471-2105-12-197},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SolvangLFBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongZLYGK11,
author = {Xu Song and
Bo{-}Li Zhang and
Hongmin Liu and
Bo{-}Yang Yu and
Xiu{-}Mei Gao and
Li{-}Yuan Kang},
title = {{IQMNMR:} Open source software using time-domain {NMR} data for automated
identification and quantification of metabolites in batches},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {337},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-337},
doi = {10.1186/1471-2105-12-337},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SongZLYGK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SreekumarBHD11,
author = {Janrdanan Sreekumar and
Cajo J. F. ter Braak and
Roeland C. H. J. van Ham and
Aalt D. J. van Dijk},
title = {Correlated mutations via regularized multinomial regression},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {444},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-444},
doi = {10.1186/1471-2105-12-444},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SreekumarBHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SrokaBGLLMABMK11,
author = {Jacek Sroka and
Lukasz Bieniasz{-}Krzywiec and
Szymon Gwozdz and
Dariusz Leniowski and
Jakub Lacki and
Mateusz Markowski and
Claudio Avignone{-}Rossa and
Michael E. Bushell and
Johnjoe McFadden and
Andrzej M. Kierzek},
title = {Acorn: {A} grid computing system for constraint based modeling and
visualization of the genome scale metabolic reaction networks via
a web interface},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {196},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-196},
doi = {10.1186/1471-2105-12-196},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SrokaBGLLMABMK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StackliesSG11,
author = {Wolfram Stacklies and
Christian Seifert and
Frauke Graeter},
title = {Implementation of Force Distribution Analysis for Molecular Dynamics
simulations},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {101},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-101},
doi = {10.1186/1471-2105-12-101},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StackliesSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StamatakisZ11,
author = {Michail Stamatakis and
Kyriacos Zygourakis},
title = {Deterministic and stochastic population-level simulations of an artificial
lac operon genetic network},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {301},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-301},
doi = {10.1186/1471-2105-12-301},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StamatakisZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StomaFGK11,
author = {Szymon Stoma and
Martina Fr{\"{o}}hlich and
Susanne Gerber and
Edda Klipp},
title = {{STSE:} Spatio-Temporal Simulation Environment Dedicated to Biology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {126},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-126},
doi = {10.1186/1471-2105-12-126},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StomaFGK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SugayaF11,
author = {Nobuyoshi Sugaya and
Toshio Furuya},
title = {Dr. {PIAS:} an integrative system for assessing the druggability of
protein-protein interactions},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {50},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-50},
doi = {10.1186/1471-2105-12-50},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SugayaF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SukosdKVKA11,
author = {Zsuzsanna S{\"{u}}k{\"{o}}sd and
Bjarne Knudsen and
Morten Vaerum and
J{\o}rgen Kjems and
Ebbe Sloth Andersen},
title = {Multithreaded comparative {RNA} secondary structure prediction using
stochastic context-free grammars},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {103},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-103},
doi = {10.1186/1471-2105-12-103},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SukosdKVKA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunCYHHL11,
author = {Shuying Sun and
Zhengyi Chen and
Pearlly Yan and
Yi{-}Wen Huang and
Tim Hui{-}Ming Huang and
Shili Lin},
title = {Identifying hypermethylated CpG islands using a quantile regression
model},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {54},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-54},
doi = {10.1186/1471-2105-12-54},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunCYHHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SykacekKMAFRM11,
author = {Peter Sykacek and
David P. Kreil and
Lisa A. Meadows and
Richard P. Auburn and
Bettina Fischer and
Steven Russell and
Gos Micklem},
title = {The impact of quantitative optimization of hybridization conditions
on gene expression analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {73},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-73},
doi = {10.1186/1471-2105-12-73},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SykacekKMAFRM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SzczurekMGBTV11,
author = {Ewa Szczurek and
Florian Markowetz and
Irit Gat{-}Viks and
Przemyslaw Biecek and
Jerzy Tiuryn and
Martin Vingron},
title = {Deregulation upon {DNA} damage revealed by joint analysis of context-specific
perturbation data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {249},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-249},
doi = {10.1186/1471-2105-12-249},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SzczurekMGBTV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TakahashiMOK11,
author = {Hiroki Takahashi and
Takuya Morimoto and
Naotake Ogasawara and
Shigehiko Kanaya},
title = {{AMDORAP:} Non-targeted metabolic profiling based on high-resolution
{LC-MS}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {259},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-259},
doi = {10.1186/1471-2105-12-259},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TakahashiMOK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangLLXSZC11,
author = {Zehui Tang and
Tonghua Li and
Rida Liu and
Wenwei Xiong and
Jiangming Sun and
Yaojuan Zhu and
Guanyan Chen},
title = {Improving the performance of beta-turn prediction using predicted
shape strings and a two-layer support vector machine model},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {283},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-283},
doi = {10.1186/1471-2105-12-283},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TangLLXSZC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangLPSPF11,
author = {Haibao Tang and
Eric Lyons and
Brent S. Pedersen and
James C. Schnable and
Andrew H. Paterson and
Michael Freeling},
title = {Screening synteny blocks in pairwise genome comparisons through integer
programming},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {102},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-102},
doi = {10.1186/1471-2105-12-102},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TangLPSPF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangWLLCP11,
author = {Xiwei Tang and
Jianxin Wang and
Binbin Liu and
Min Li and
Gang Chen and
Yi Pan},
title = {A comparison of the functional modules identified from time course
and static {PPI} network data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {339},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-339},
doi = {10.1186/1471-2105-12-339},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TangWLLCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangZLC11,
author = {Kailin Tang and
Ruixin Zhu and
Yixue Li and
Zhi{-}Wei Cao},
title = {Discrimination of Approved Drugs from Experimental Drugs by Learning
Methods},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {157},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-157},
doi = {10.1186/1471-2105-12-157},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TangZLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TapiaOBA11,
author = {Elizabeth Tapia and
Leonardo Ornella and
Pilar Bulacio and
Laura Angelone},
title = {Multiclass classification of microarray data samples with a reduced
number of genes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {59},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-59},
doi = {10.1186/1471-2105-12-59},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TapiaOBA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TataruH11,
author = {Paula Tataru and
Asger Hobolth},
title = {Comparison of methods for calculating conditional expectations of
sufficient statistics for continuous time Markov chains},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {465},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-465},
doi = {10.1186/1471-2105-12-465},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TataruH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TeyraSSP11,
author = {Joan Teyra and
Sergey A. Samsonov and
Sven Schreiber and
M. Teresa Pisabarro},
title = {{SCOWLP} update: 3D classification of protein-protein, -peptide, -saccharide
and -nucleic acid interactions, and structure-based binding inferences
across folds},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {398},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-398},
doi = {10.1186/1471-2105-12-398},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TeyraSSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThompsonMMCGLMMPQRSVRA11,
author = {Paul Thompson and
John McNaught and
Simonetta Montemagni and
Nicoletta Calzolari and
Riccardo Del Gratta and
Vivian Lee and
Simone Marchi and
Monica Monachini and
Piotr Pezik and
Valeria Quochi and
C. J. Rupp and
Yutaka Sasaki and
Giulia Venturi and
Dietrich Rebholz{-}Schuhmann and
Sophia Ananiadou},
title = {The BioLexicon: a large-scale terminological resource for biomedical
text mining},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {397},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-397},
doi = {10.1186/1471-2105-12-397},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ThompsonMMCGLMMPQRSVRA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThompsonNMA11,
author = {Paul Thompson and
Raheel Nawaz and
John McNaught and
Sophia Ananiadou},
title = {Enriching a biomedical event corpus with meta-knowledge annotation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {393},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-393},
doi = {10.1186/1471-2105-12-393},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ThompsonNMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TianWCDHJ11,
author = {Liqing Tian and
Aiping Wu and
Yang Cao and
Xiaoxi Dong and
Yun Hu and
Taijiao Jiang},
title = {NCACO-score: An effective main-chain dependent scoring function for
structure modeling},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {208},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-208},
doi = {10.1186/1471-2105-12-208},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TianWCDHJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ToofannySBD11,
author = {Rudesh D. Toofanny and
Andrew M. Simms and
David A. C. Beck and
Valerie Daggett},
title = {Implementation of 3D spatial indexing and compression in a large-scale
molecular dynamics simulation database for rapid atomic contact detection},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {334},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-334},
doi = {10.1186/1471-2105-12-334},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ToofannySBD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TorrentoCSHKN11,
author = {Josep Rius and
Fernando Cores and
Francesc Solsona and
Jano I. van Hemert and
Jos Koetsier and
C{\'{e}}dric Notredame},
title = {A user-friendly web portal for T-Coffee on supercomputers},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {150},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-150},
doi = {10.1186/1471-2105-12-150},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TorrentoCSHKN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TorresVBGTD11,
author = {Clinton Torres and
Elizabeth A. Vitalis and
Brian R. Baker and
Shea N. Gardner and
Marisa W. Torres and
John M. Dzenitis},
title = {{LAVA:} An Open-Source Approach To Designing {LAMP} (Loop-Mediated
Isothermal Amplification) {DNA} Signatures},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {240},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-240},
doi = {10.1186/1471-2105-12-240},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TorresVBGTD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TruongGMG11,
author = {Cong V. C. Truong and
Linn F. Groeneveld and
Burkhard Morgenstern and
Eildert Groeneveld},
title = {MolabIS - An Integrated Information System for Storing and Managing
Molecular Genetics Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {425},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-425},
doi = {10.1186/1471-2105-12-425},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TruongGMG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TruszkowskiB11,
author = {Jakub Truszkowski and
Daniel Gregory Brown},
title = {More accurate recombination prediction in {HIV-1} using a robust decoding
algorithm for HMMs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {168},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-168},
doi = {10.1186/1471-2105-12-168},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TruszkowskiB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsaiL11,
author = {Richard Tzong{-}Han Tsai and
Po{-}Ting Lai},
title = {Dynamic programming re-ranking for {PPI} interactor and pair extraction
in full-text articles},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {60},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-60},
doi = {10.1186/1471-2105-12-60},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TsaiL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsoiQSZ11,
author = {Lam C. Tsoi and
Tingting Qin and
Elizabeth H. Slate and
W. Jim Zheng},
title = {Consistent Differential Expression Pattern {(CDEP)} on microarray
to identify genes related to metastatic behavior},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {438},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-438},
doi = {10.1186/1471-2105-12-438},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TsoiQSZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsugawaTABF11,
author = {Hiroshi Tsugawa and
Yuki Tsujimot and
Masanori Arita and
Takeshi Bamba and
Eiichiro Fukusaki},
title = {{GC/MS} Based Metabolomics: Development of a Data Mining System for
Metabolite Identification by using Soft Independent Modeling of Class
Analogy {(SIMCA)}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {131},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-131},
doi = {10.1186/1471-2105-12-131},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TsugawaTABF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TulpanLBCC11,
author = {Dan C. Tulpan and
Serge L{\'{e}}ger and
Luc Belliveau and
Adrian Culf and
Miroslava Cuperlovic{-}Culf},
title = {MetaboHunter: an automatic approach for identification of metabolites
from 1H-NMR spectra of complex mixtures},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {400},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-400},
doi = {10.1186/1471-2105-12-400},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TulpanLBCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TungZKKH11,
author = {Chun{-}Wei Tung and
Matthias Ziehm and
Andreas K{\"{a}}mper and
Oliver Kohlbacher and
Shinn{-}Ying Ho},
title = {{POPISK:} T-cell reactivity prediction using support vector machines
and string kernels},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {446},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-446},
doi = {10.1186/1471-2105-12-446},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TungZKKH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TuszynskaB11,
author = {Irina Tuszynska and
Janusz M. Bujnicki},
title = {{DARS-RNP} and {QUASI-RNP:} New statistical potentials for protein-RNA
docking},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {348},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-348},
doi = {10.1186/1471-2105-12-348},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TuszynskaB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UitdehaagZ11,
author = {Joost C. M. Uitdehaag and
Guido J. R. Zaman},
title = {A theoretical entropy score as a single value to express inhibitor
selectivity},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {94},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-94},
doi = {10.1186/1471-2105-12-94},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/UitdehaagZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UnterthinerSBMSB11,
author = {Thomas Unterthiner and
Anne{-}Kathrin Schultz and
Jan Bulla and
Burkhard Morgenstern and
Mario Stanke and
Ingo Bulla},
title = {Detection of viral sequence fragments of {HIV-1} subfamilies yet unknown},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {93},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-93},
doi = {10.1186/1471-2105-12-93},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/UnterthinerSBMSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UsieKTVFAS11,
author = {Anabel Usie and
Hiren Karathia and
Ivan Teixido and
Joan Valls and
Xavier Faus and
Rui Alves and
Francesc Solsona},
title = {Biblio-MetReS: {A} bibliometric network reconstruction application
and server},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {387},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-387},
doi = {10.1186/1471-2105-12-387},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/UsieKTVFAS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VandeweyerRWRK11,
author = {Geert Vandeweyer and
Edwin Reyniers and
Wim Wuyts and
Liesbeth Rooms and
R. Frank Kooy},
title = {CNV-WebStore: Online {CNV} Analysis, Storage and Interpretation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-4},
doi = {10.1186/1471-2105-12-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VandeweyerRWRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VisserAVSLS11,
author = {Ubbo Visser and
Saminda Abeyruwan and
Uma Vempati and
Robin P. Smith and
Vance P. Lemmon and
Stephan C. Sch{\"{u}}rer},
title = {BioAssay Ontology {(BAO):} {A} Semantic Description of Bioassays and
High-Throughput Screening Results},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {257},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-257},
doi = {10.1186/1471-2105-12-257},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VisserAVSLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VoorripsGV11,
author = {Roeland E. Voorrips and
Gerrit Gort and
Ben Vosman},
title = {Genotype calling in tetraploid species from bi-allelic marker data
using mixture models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {172},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-172},
doi = {10.1186/1471-2105-12-172},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VoorripsGV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VosCHJM11,
author = {Rutger A. Vos and
Jason Caravas and
Klaas Hartmann and
Mark A. Jensen and
Chase A. Miller},
title = {Bio: : Phylo - phyloinformatic analysis using Perl},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {63},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-63},
doi = {10.1186/1471-2105-12-63},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VosCHJM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VrolingTMAVP11,
author = {Bas Vroling and
David Thorne and
Philip McDermott and
Teresa K. Attwood and
Gert Vriend and
Steve Pettifer},
title = {Integrating GPCR-specific information with full text articles},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {362},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-362},
doi = {10.1186/1471-2105-12-362},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VrolingTMAVP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VuVSVDLVGL11,
author = {Trung{-}Nghia Vu and
Dirk Valkenborg and
Koen Smets and
Kim A. Verwaest and
Roger Dommisse and
Filip Lemi{\`{e}}re and
Alain Verschoren and
Bart Goethals and
Kris Laukens},
title = {An integrated workflow for robust alignment and simplified quantitative
analysis of {NMR} spectrometry data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {405},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-405},
doi = {10.1186/1471-2105-12-405},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VuVSVDLVGL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangHXCJFLW11,
author = {Kai Wang and
Fuyan Hu and
Kejia Xu and
Hua Cheng and
Meng Jiang and
Ruili Feng and
Jing Li and
Tieqiao Wen},
title = {CASCADE{\_}SCAN: mining signal transduction network from high-throughput
data based on steepest descent method},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {164},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-164},
doi = {10.1186/1471-2105-12-164},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangHXCJFLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangKBM11,
author = {Lili Wang and
Pouya Khankhanian and
Sergio Baranzini and
Parvin Mousavi},
title = {iCTNet: {A} Cytoscape plugin to produce and analyze integrative complex
traits networks},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {380},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-380},
doi = {10.1186/1471-2105-12-380},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangKBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangL11,
author = {Hui Wang and
Mark J. van der Laan},
title = {Dimension Reduction with Gene Expression Data Using Targeted Variable
Importance Measurement},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {312},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-312},
doi = {10.1186/1471-2105-12-312},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangS11,
author = {Xiaosheng Wang and
Richard Simon},
title = {Microarray-based Cancer Prediction Using Single Genes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {391},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-391},
doi = {10.1186/1471-2105-12-391},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangTLHH11,
author = {Jinlian Wang and
Manabu Torii and
Hongfang Liu and
Gerald W. Hart and
Zhang{-}Zhi Hu},
title = {dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {91},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-91},
doi = {10.1186/1471-2105-12-91},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangTLHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangWNWLS11,
author = {Yulong Wang and
Wenjun Wu and
Nicolas N. Negre and
Kevin P. White and
Cheng Li and
Parantu K. Shah},
title = {Determinants of Antigenicity and Specificity in immune response for
Protein Sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {251},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-251},
doi = {10.1186/1471-2105-12-251},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangWNWLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangZ11,
author = {Weichen Wang and
Xuegong Zhang},
title = {Network-based group variable selection for detecting expression quantitative
trait loci (eQTL)},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {269},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-269},
doi = {10.1186/1471-2105-12-269},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeinbergB11,
author = {Zasha Weinberg and
Ronald R. Breaker},
title = {{R2R} - software to speed the depiction of aesthetic consensus {RNA}
secondary structures},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-3},
doi = {10.1186/1471-2105-12-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeinbergB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WengMSGPYX11,
author = {Lingjie Weng and
Fabio Macciardi and
Aravind Subramanian and
Guia Guffanti and
Steven G. Potkin and
Zhaoxia Yu and
Xiaohui Xie},
title = {SNP-based pathway enrichment analysis for genome-wide association
studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {99},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-99},
doi = {10.1186/1471-2105-12-99},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WengMSGPYX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WetzelKP11,
author = {Joshua L. Wetzel and
Carl Kingsford and
Mihai Pop},
title = {Assessing the benefits of using mate-pairs to resolve repeats in de
novo short-read prokaryotic assemblies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {95},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-95},
doi = {10.1186/1471-2105-12-95},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WetzelKP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WirthLBB11,
author = {Henry Wirth and
Markus L{\"{o}}ffler and
Martin von Bergen and
Hans Binder},
title = {Expression cartography of human tissues using self organizing maps},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {306},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-306},
doi = {10.1186/1471-2105-12-306},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WirthLBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WolfsheimerHRH11,
author = {Stefan Wolfsheimer and
Inke Herms and
Sven Rahmann and
Alexander K. Hartmann},
title = {Accurate statistics for local sequence alignment with position-dependent
scoring by rare-event sampling},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {47},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-47},
doi = {10.1186/1471-2105-12-47},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WolfsheimerHRH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WorthKKK11,
author = {Catherine L. Worth and
Annika Kreuchwig and
Gunnar Kleinau and
Gerd Krause},
title = {{GPCR-SSFE:} {A} comprehensive database of G-protein-coupled receptor
template predictions and homology models},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {185},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-185},
doi = {10.1186/1471-2105-12-185},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WorthKKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuWLLR11,
author = {Yonggan Wu and
Bo Wei and
Haizhou Liu and
Tianxian Li and
Simon Rayner},
title = {MiRPara: a SVM-based software tool for prediction of most probable
microRNA coding regions in genome scale sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {107},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-107},
doi = {10.1186/1471-2105-12-107},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WuWLLR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaWCZ11,
author = {Zheng Xia and
Jianguo Wen and
Chung{-}Che Chang and
Xiaobo Zhou},
title = {{NSMAP:} {A} Method for Spliced Isoforms Identification and Quantification
from RNA-Seq},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {162},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-162},
doi = {10.1186/1471-2105-12-162},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaWCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaoTLFMHL11,
author = {Jiamin Xiao and
Xiaojing Tang and
Yizhou Li and
Zheng Fang and
Daichuan Ma and
Yangzhige He and
Menglong Li},
title = {Identification of microRNA precursors based on random forest with
network-level representation method of stem-loop structure},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {165},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-165},
doi = {10.1186/1471-2105-12-165},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaoTLFMHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiePSDZBKPCGSSAKPHGF11,
author = {Hongbo M. Xie and
Juan C. Perin and
Theodore G. Schurr and
Matthew C. Dulik and
Sergey I. Zhadanov and
Joseph A. Baur and
Michael P. King and
Emily Place and
Colleen Clarke and
Michael Grauer and
Jonathan Schug and
Avni Santani and
Anthony Albano and
Cecilia Kim and
Vincent Procaccio and
Hakon Hakonarson and
Xiaowu Gai and
Marni J. Falk},
title = {Mitochondrial Genome Sequence Analysis: {A} custom bioinformatics
pipeline substantially improves Affymetrix MitoChip v2.0 call rate
and accuracy},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {402},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-402},
doi = {10.1186/1471-2105-12-402},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XiePSDZBKPCGSSAKPHGF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuHS11,
author = {Cheng{-}Jian Xu and
Huub C. J. Hoefsloot and
Age K. Smilde},
title = {To aggregate or not to aggregate high-dimensional classifiers},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {153},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-153},
doi = {10.1186/1471-2105-12-153},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XuHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuPFA11,
author = {Yaji Xu and
Bo Peng and
Yunxin Fu and
Christopher I. Amos},
title = {Genome-wide algorithm for detecting {CNV} associations with diseases},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {331},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-331},
doi = {10.1186/1471-2105-12-331},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuPFA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XueDH11,
author = {Li C. Xue and
Drena Dobbs and
Vasant G. Honavar},
title = {HomPPI: {A} Class of Sequence Homology Based Protein-Protein Interface
Prediction Methods},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {244},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-244},
doi = {10.1186/1471-2105-12-244},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XueDH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YakhiniJ11,
author = {Zohar Yakhini and
Igor Jurisica},
title = {Cancer Computational Biology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {120},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-120},
doi = {10.1186/1471-2105-12-120},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YakhiniJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YanCZ11,
author = {Ren{-}Xiang Yan and
Zhen Chen and
Ziding Zhang},
title = {Outer membrane proteins can be simply identified using secondary structure
element alignment},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {76},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-76},
doi = {10.1186/1471-2105-12-76},
timestamp = {Mon, 04 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YanCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangCM11,
author = {Jie Yang and
Geroge Casella and
Lauren M. McIntyre},
title = {Generalized shrinkage F-like statistics for testing an interaction
term in gene expression analysis in the presence of heteroscedasticity},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {427},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-427},
doi = {10.1186/1471-2105-12-427},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangLDG11,
author = {Jialiang Yang and
Jun Li and
Liuhuan Dong and
Stefan Gr{\"{u}}newald},
title = {Analysis on the reconstruction accuracy of the Fitch method for inferring
ancestral states},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {18},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-18},
doi = {10.1186/1471-2105-12-18},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YangLDG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangLKCLLWCP11,
author = {Hsin{-}Chou Yang and
Hsin{-}Chi Lin and
Meijyh Kang and
Chun{-}Houh Chen and
Chien{-}Wei Lin and
Ling{-}Hui Li and
Jer{-}Yuarn Wu and
Yuan{-}Tsong Chen and
Wen{-}Harn Pan},
title = {{SAQC:} {SNP} array quality control},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {100},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-100},
doi = {10.1186/1471-2105-12-100},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YangLKCLLWCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangSK11,
author = {Yan Yang and
Phillip Stafford and
YoonJoo Kim},
title = {Segmentation and intensity estimation for microarray images with saturated
pixels},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {462},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-462},
doi = {10.1186/1471-2105-12-462},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangWYXTY11,
author = {Can Yang and
Xiang Wan and
Qiang Yang and
Hong Xue and
Nelson L. S. Tang and
Weichuan Yu},
title = {A hidden two-locus disease association pattern in genome-wide association
studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {156},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-156},
doi = {10.1186/1471-2105-12-156},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangWYXTY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YaoHC11,
author = {Cheng{-}Wei Yao and
Ban{-}Dar Hsu and
Bor{-}Sen Chen},
title = {Constructing gene regulatory networks for long term photosynthetic
light acclimation in Arabidopsis thaliana},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {335},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-335},
doi = {10.1186/1471-2105-12-335},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YaoHC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YeCT11,
author = {Yuzhen Ye and
Jeong{-}Hyeon Choi and
Haixu Tang},
title = {RAPSearch: a Fast Protein Similarity Search Tool for Short Reads},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {159},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-159},
doi = {10.1186/1471-2105-12-159},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YeCT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YokR11,
author = {Non G. Yok and
Gail L. Rosen},
title = {Combining gene prediction methods to improve metagenomic gene annotation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {20},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-20},
doi = {10.1186/1471-2105-12-20},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YokR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YoshidaK11,
author = {Makiko Yoshida and
Asako Koike},
title = {SNPInterForest: {A} new method for detecting epistatic interactions},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {469},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-469},
doi = {10.1186/1471-2105-12-469},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YoshidaK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuLYLLL11,
author = {Hui Yu and
Bao{-}Hong Liu and
Zhi{-}Qiang Ye and
Chun Li and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Link-based Quantitative Methods to Identify Differentially Coexpressed
Genes and Gene Pairs},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {315},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-315},
doi = {10.1186/1471-2105-12-315},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YuLYLLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuanCNXTVSK11,
author = {Yuan Yuan and
Yi{-}Ping Phoebe Chen and
Shengyu Ni and
Augix Guohua Xu and
Lin Tang and
Martin Vingron and
Mehmet Somel and
Philipp Khaitovich},
title = {Development and application of a modified dynamic time warping algorithm
{(DTW-S)} to analyses of primate brain expression time series},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {347},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-347},
doi = {10.1186/1471-2105-12-347},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuanCNXTVSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZagordiBEB11,
author = {Osvaldo Zagordi and
Arnab Bhattacharya and
Nicholas Eriksson and
Niko Beerenwinkel},
title = {ShoRAH: estimating the genetic diversity of a mixed sample from next-generation
sequencing data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {119},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-119},
doi = {10.1186/1471-2105-12-119},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZagordiBEB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZakiWNK11,
author = {Nazar Zaki and
Stefan Wolfsheimer and
Gr{\'{e}}gory Nuel and
Sawsan Khuri},
title = {Conotoxin Protein Classification Using Free Scores of Words and Support
Vector Machines},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {217},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-217},
doi = {10.1186/1471-2105-12-217},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZakiWNK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZeebergLKERBBBLRWP11,
author = {Barry Zeeberg and
Hongfang Liu and
Ari B. Kahn and
Martin Ehler and
Vinodh N. Rajapakse and
Robert F. Bonner and
Jacob D. Brown and
Brian P. Brooks and
Vladimir L. Larionov and
William C. Reinhold and
John N. Weinstein and
Yves Pommier},
title = {RedundancyMiner: De-replication of redundant {GO} categories in microarray
and proteomics analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {52},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-52},
doi = {10.1186/1471-2105-12-52},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZeebergLKERBBBLRWP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZemlaLKAZ11,
author = {Adam T. Zemla and
Dorothy M. Lang and
Tanya Kostova and
Raul Andino and
Carol L. Ecale Zhou},
title = {StralSV: assessment of sequence variability within similar 3D structures
and application to polio RNA-dependent {RNA} polymerase},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {226},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-226},
doi = {10.1186/1471-2105-12-226},
timestamp = {Wed, 25 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZemlaLKAZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangCWXZC11,
author = {Bo Zhang and
Beibei Chen and
Tao Wu and
Zhenyu Xuan and
Xiaopeng Zhu and
Runsheng Chen},
title = {Estimating developmental states of tumors and normal tissues using
a linear time-ordered model},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {53},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-53},
doi = {10.1186/1471-2105-12-53},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangCWXZC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLNPS11,
author = {Shaoqiang Zhang and
Shan Li and
Meng Niu and
Phuc T. Pham and
Zhengchang Su},
title = {MotifClick: prediction of cis-regulatory binding sites via merging
cliques},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {238},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-238},
doi = {10.1186/1471-2105-12-238},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLNPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangMMCWH11,
author = {Jiajie Zhang and
Amir Madany Mamlouk and
Thomas Martinetz and
Suhua Chang and
Jing Wang and
Rolf Hilgenfeld},
title = {PhyloMap: an algorithm for visualizing relationships of large sequence
data sets and its application to the influenza {A} virus genome},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {248},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-248},
doi = {10.1186/1471-2105-12-248},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangMMCWH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangP11,
author = {Bailing Zhang and
Tuan D. Pham},
title = {Phenotype Recognition with Combined Features and Random Subspace Classifier
Ensemble},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {128},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-128},
doi = {10.1186/1471-2105-12-128},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangS11,
author = {Yuan Zhang and
Yanni Sun},
title = {{HMM-FRAME:} accurate protein domain classification for metagenomic
sequences in the presence of frameshift errors},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {198},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-198},
doi = {10.1186/1471-2105-12-198},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangWBHPD11,
author = {Ke Zhang and
Haiyan Wang and
Arne C. Bathke and
Solomon W. Harrar and
Hans{-}Peter Piepho and
Youping Deng},
title = {Gene set analysis for longitudinal gene expression data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {273},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-273},
doi = {10.1186/1471-2105-12-273},
timestamp = {Wed, 10 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWBHPD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangWBZS11,
author = {Shenghui Zhang and
Yaojun Wang and
Dongbo Bu and
Hong Zhang and
Shiwei Sun},
title = {ProbPS: {A} new model for peak selection based on quantifying the
dependence of the existence of derivative peaks on primary ion intensity},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {346},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-346},
doi = {10.1186/1471-2105-12-346},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWBZS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangWH11,
author = {Liqing Zhang and
Layne T. Watson and
Lenwood S. Heath},
title = {A Network of {SCOP} Hidden Markov Models and Its Analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {191},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-191},
doi = {10.1186/1471-2105-12-191},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangWHFZG11,
author = {Changqing Zhang and
Jin Wang and
Xu Hua and
Jinggui Fang and
Huaiqiu Zhu and
Xiang Gao},
title = {A mutation degree model for the identification of transcriptional
regulatory elements},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {262},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-262},
doi = {10.1186/1471-2105-12-262},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWHFZG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangXZZYL11,
author = {Wen Zhang and
Yi Xiong and
Meng Zhao and
Hua Zou and
Xinghuo Ye and
Juan Liu},
title = {Prediction of conformational B-cell epitopes from 3D structures by
random forest with a distance-based feature},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {341},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-341},
doi = {10.1186/1471-2105-12-341},
timestamp = {Fri, 22 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangXZZYL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZ11,
author = {Shannon Zhang and
Yaping Zong},
title = {Was the Scanner Calibration Slide Used for Its Intended Purpose?},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {110},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-110},
doi = {10.1186/1471-2105-12-110},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZ11a,
author = {Zhihua Zhang and
Michael Q. Zhang},
title = {Histone modification profiles are predictive for tissue/cell-type
specific expression of both protein-coding and microRNA genes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {155},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-155},
doi = {10.1186/1471-2105-12-155},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZ11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhaoGSLT11,
author = {Jingyuan Zhao and
Simone Gupta and
Mark Seielstad and
Jianjun Liu and
Anbupalam Thalamuthu},
title = {Pathway-based analysis using reduced gene subsets in genome-wide association
studies},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {17},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-17},
doi = {10.1186/1471-2105-12-17},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoGSLT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengCZ11,
author = {Wei Zheng and
Lisa M. Chung and
Hongyu Zhao},
title = {Bias Detection and Correction in RNA-Sequencing Data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {290},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-290},
doi = {10.1186/1471-2105-12-290},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengZGF11,
author = {Yi Zheng and
Liangjun Zhao and
Junping Gao and
Zhangjun Fei},
title = {iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome
sequences},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {453},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-453},
doi = {10.1186/1471-2105-12-453},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengZGF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhouN11,
author = {Wanding Zhou and
Luay Nakhleh},
title = {Properties of Metabolic Graphs: Biological Organization or Representation
Artifacts?},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {132},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-132},
doi = {10.1186/1471-2105-12-132},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuSCDLW11,
author = {Qian Zhu and
Yuyin Sun and
Sashikiran Challa and
Ying Ding and
Michael S. Lajiness and
David J. Wild},
title = {Semantic Inference using Chemogenomics Data for Drug Discovery},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {256},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-256},
doi = {10.1186/1471-2105-12-256},
timestamp = {Mon, 21 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuSCDLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZiaM11,
author = {Amin Zia and
Alan M. Moses},
title = {Ranking insertion, deletion and nonsense mutations based on their
effect on genetic information},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {299},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-299},
doi = {10.1186/1471-2105-12-299},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZiaM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZimmermannKJ11,
author = {Michael T. Zimmermann and
Andrzej Kloczkowski and
Robert L. Jernigan},
title = {{MAVEN:} Motion Analysis and Visualization of Elastic Networks and
Structural Ensembles},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {264},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-264},
doi = {10.1186/1471-2105-12-264},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZimmermannKJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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