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3. AlCoB 2016: Trujillo, Spain

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María Botón-Fernández, Carlos Martín-Vide, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez:
Algorithms for Computational Biology - Third International Conference, AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings. Lecture Notes in Computer Science 9702, Springer 2016, ISBN 978-3-319-38826-7

Invited Talk

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David Sankoff, Chunfang Zheng, Eric Lyons, Haibao Tang:
The Trees in the Peaks. 3-14

Biological Networks and Modelling

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Daniel Figueiredo:
Relating Bisimulations with Attractors in Boolean Network Models. 17-25
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Tibor Kmet, Maria Kmetova:
Neural Networks Simulation of Feeding Adaptations of Daphnia. 26-37
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Charmi Panchal, Sepinoud Azimi, Ion Petre:
Generating the Logicome of a Biological Network. 38-49

Biological Structure Processing

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Cédric Chauve, Julien Courtiel, Yann Ponty:
Counting, Generating and Sampling Tree Alignments. 53-64
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  - conf/alcob/Lopez-CamachoGG16
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Esteban López-Camacho, María Jesús García-Godoy, José García-Nieto, Antonio J. Nebro, José Francisco Aldana-Montes:
A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy. 65-77
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Saad Mneimneh, Syed Ali Ahmed:
Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions. 78-90

Phylogenetics

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Sourya Bhattacharyya, Jayanta Mukhopadhyay:
Accumulated Coalescence Rank and Excess Gene Count for Species Tree Inference. 93-105
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Agnieszka Mykowiecka, Pawel Górecki:
Bootstrapping Algorithms for Gene Duplication and Speciation Events. 106-118
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Laura Urbini, Blerina Sinaimeri, Catherine Matias, Marie-France Sagot:
Robustness of the Parsimonious Reconciliation Method in Cophylogeny. 119-130

Sequence Analysis and Rearrangement

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Carlo Comin, Anthony Labarre, Romeo Rizzi, Stéphane Vialette:
Sorting with Forbidden Intermediates. 133-144
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Simone Faro:
Evaluation and Improvement of Fast Algorithms for Exact Matching on Genome Sequences. 145-157
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Mikko Rautiainen, Leena Salmela, Veli Mäkinen:
Identification of Variant Compositions in Related Strains Without Reference. 158-170
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Sergey P. Tsarev, Michael G. Sadovsky:
New Error Tolerant Method for Search of Long Repeats in DNA Sequences. 171-182

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