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BioData Mining, Volume 11
Volume 11, Number 1, December 2018
- Eunice Carrasquinha
, André Veríssimo
, Marta B. Lopes
, Susana Vinga
:
Identification of influential observations in high-dimensional cancer survival data through the rank product test. 1:1-1:14 - Moshe Sipper
, Weixuan Fu
, Karuna Ahuja, Jason H. Moore:
Investigating the parameter space of evolutionary algorithms. 2:1-2:14 - Wenyi Qin, Hui Lu
:
A novel joint analysis framework improves identification of differentially expressed genes in cross disease transcriptomic analysis. 3:1-3:17 - Juan A. Nepomuceno
, Alicia Troncoso
, Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz
:
Pairwise gene GO-based measures for biclustering of high-dimensional expression data. 4:1-4:19 - Shefali S. Verma, Anastasia Lucas, Xinyuan Zhang, Yogasudha Veturi, Scott M. Dudek, Binglan Li
, Ruowang Li, Ryan J. Urbanowicz
, Jason H. Moore, Dokyoon Kim, Marylyn D. Ritchie:
Collective feature selection to identify crucial epistatic variants. 5:1-5:22 - Elizabeth R. Piette, Jason H. Moore:
Improving machine learning reproducibility in genetic association studies with proportional instance cross validation (PICV). 6:1-6:11 - Enrico Ferrero
, Pankaj Agarwal
:
Connecting genetics and gene expression data for target prioritisation and drug repositioning. 7:1-7:9 - Ravi Mathur
, Daniel M. Rotroff
, Jun Ma
, Ali Shojaie, Alison A. Motsinger-Reif
:
Gene set analysis methods: a systematic comparison. 8:1-8:19 - Amani Al-Ajlan
, Achraf El Allali
:
Feature selection for gene prediction in metagenomic fragments. 9:1-9:12 - Kimberly To, Rebecca C. Fry
, David M. Reif
:
Characterizing the effects of missing data and evaluating imputation methods for chemical prioritization applications using ToxPi. 10:1-10:12 - Jens Dörpinghaus
, Sebastian Schaaf, Marc Jacobs
:
Soft document clustering using a novel graph covering approach. 11:1-11:20 - Laura Tipton, Karen T. Cuenco, Laurence Huang
, Ruth M. Greenblatt, Eric Kleerup, Frank C. Sciurba
, Steven R. Duncan, Michael P. Donahoe, Alison Morris, Elodie Ghedin
:
Measuring associations between the microbiota and repeated measures of continuous clinical variables using a lasso-penalized generalized linear mixed model. 12:1-12:20 - Catherine Li, Juyon Lee, Jessica Ding, Shuying Sun
:
Integrative analysis of gene expression and methylation data for breast cancer cell lines. 13:1-13:16 - Kathleen M. Chen
, Jie Tan
, Gregory P. Way
, Georgia Doing
, Deborah A. Hogan
, Casey S. Greene
:
PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia. 14:1-14:20 - David Gutiérrez-Avilés
, Raúl Giráldez
, Francisco Javier Gil-Cumbreras, Cristina Rubio-Escudero:
TRIQ: a new method to evaluate triclusters. 15:1-15:29 - Jorge Parraga-Alava
, Márcio Dorn
, Mario Inostroza-Ponta
:
A multi-objective gene clustering algorithm guided by apriori biological knowledge with intensification and diversification strategies. 16:1-16:22 - Cheng-Hong Yang, Kuo-Chuan Wu
, Yu-Shiun Lin, Li-Yeh Chuang, Hsueh-Wei Chang
:
Protein folding prediction in the HP model using ions motion optimization with a greedy algorithm. 17:1-17:14 - Christina Brester
, Jussi Kauhanen, Tomi-Pekka Tuomainen, Sari Voutilainen, Mauno Rönkkö, Kimmo Ronkainen, Eugene Semenkin, Mikko Kolehmainen:
Evolutionary methods for variable selection in the epidemiological modeling of cardiovascular diseases. 18:1-18:14 - Jing Zhang, Dan Wu, Yiqin Dai, Jianjiang Xu
:
Functional relevance for central cornea thickness-associated genetic variants by using integrative analyses. 19:1-19:13 - Aida Mrzic, Pieter Meysman
, Wout Bittremieux
, Pieter Moris
, Boris Cule, Bart Goethals
, Kris Laukens
:
Grasping frequent subgraph mining for bioinformatics applications. 20:1-20:24 - Moshe Sipper
, Ryan J. Urbanowicz
, Jason H. Moore:
To know the objective is not (necessarily) to know the objective function. 21:1-21:3 - Eleonora Cappelli, Giovanni Felici, Emanuel Weitschek
:
Combining DNA methylation and RNA sequencing data of cancer for supervised knowledge extraction. 22:1-22:23 - M. Arabnejad, Bryan A. Dawkins, William S. Bush
, Bill C. White, A. R. Harkness, Brett A. McKinney
:
Transition-transversion encoding and genetic relationship metric in ReliefF feature selection improves pathway enrichment in GWAS. 23:1-23:17 - Weifu Li, Jing Liu, Chi Xiao, Hao Deng, Qiwei Xie, Hua Han:
A fast forward 3D connection algorithm for mitochondria and synapse segmentations from serial EM images. 24:1-24:15 - Daria Efimova, Alexander V. Tyakht
, Anna S. Popenko
, Anatoly N. Vasilyev, Ilya A. Altukhov, Nikita V. Dovidchenko, Vera Odintsova
, Natalya Klimenko
, Robert Loshkarev
, Maria Pashkova, Anna Elizarova
, Viktoriya Voroshilova, Sergei Slavskii, Yury Pekov, Ekaterina Filippova, Tatiana Shashkova
, Evgenii Levin, Dmitry G. Alexeev
:
Knomics-Biota - a system for exploratory analysis of human gut microbiota data. 25:1-25:7 - David Bouzaglo, Israel Chasida, Elishai Ezra Tsur
:
Distributed retrieval engine for the development of cloud-deployed biological databases. 26:1-26:10 - Seungyeoun Lee
, Donghee Son, Yongkang Kim, Wenbao Yu
, Taesung Park:
Unified Cox model based multifactor dimensionality reduction method for gene-gene interaction analysis of the survival phenotype. 27:1-27:13
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