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BMC Bioinformatics, Volume 20
Volume 20, Number 1, December 2019
- Jun Ruan
, Zhen Liu, Ming Sun, Yue Wang, Junqiu Yue, Guoqiang Yu:
DBS: a fast and informative segmentation algorithm for DNA copy number analysis. 1:1-1:14 - Sarah Machado, Vincent Mercier
, Nicolas Chiaruttini
:
LimeSeg: a coarse-grained lipid membrane simulation for 3D image segmentation. 2:1-2:12 - Chia-Ying Chen, Trees-Juen Chuang:
NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors. 3:1-3:11 - Marco Seeland
, Michael Rzanny
, David Boho, Jana Wäldchen, Patrick Mäder:
Image-based classification of plant genus and family for trained and untrained plant species. 4:1-4:13 - Hezha Hassan
, Siba Shanak:
GOTrapper: a tool to navigate through branches of gene ontology hierarchy. 20:1-20:6 - Harald Marx, Joshua J. Coon:
MS-Helios: a Circos wrapper to visualize multi-omic datasets. 21:1-21:4 - Toomas Haller
, Tõnis Tasa, Andres Metspalu:
Manhattan Harvester and Cropper: a system for GWAS peak detection. 22:1-22:8 - Lixin Cheng
, Pengfei Liu, Dong Wang, Kwong-Sak Leung:
Exploiting locational and topological overlap model to identify modules in protein interaction networks. 23:1-23:9 - Valentin Iglesias
, Oscar Conchillo-Solé
, Cristina Batlle
, Salvador Ventura
:
AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity. 24:1-24:5 - Robin Wellmann
:
Optimum contribution selection for animal breeding and conservation: the R package optiSel. 25:1-25:13 - Apostolos Dimitromanolakis, Jingxiong Xu, Agnieszka Król, Laurent Briollais
:
sim1000G: a user-friendly genetic variant simulator in R for unrelated individuals and family-based designs. 26:1-26:9 - Ine Melckenbeeck
, Pieter Audenaert, Thomas Van Parys, Yves Van de Peer
, Didier Colle, Mario Pickavet
:
Optimising orbit counting of arbitrary order by equation selection. 27:1-27:13 - Meng Wang
, Lei Kong:
pblat: a multithread blat algorithm speeding up aligning sequences to genomes. 28:1-28:4 - Lech Nieroda, Lukas Maas, Scott Thiebes, Ulrich Lang, Ali Sunyaev, Viktor Achter, Martin Peifer
:
iRODS metadata management for a cancer genome analysis workflow. 29:1-29:8 - Maarten W. Paul
, H. Martijn de Gruiter, Zhanmin Lin, Willy M. Baarends, Wiggert A. van Cappellen, Adriaan B. Houtsmuller, Johan A. Slotman
:
SMoLR: visualization and analysis of single-molecule localization microscopy data in R. 30:1-30:7 - Charlotte Debus
, Ralf Floca, Michael Ingrisch
, Ina Kompan, Klaus H. Maier-Hein
, Amir Abdollahi, Marco Nolden
:
MITK-ModelFit: A generic open-source framework for model fits and their exploration in medical imaging - design, implementation and application on the example of DCE-MRI. 31:1-31:18 - Akshay Tambe, Lior Pachter
:
Barcode identification for single cell genomics. 32:1-32:9 - Mischa Schwendy, Ronald E. Unger, Mischa Bonn, Sapun H. Parekh
:
Automated cell segmentation in FIJI® using the DRAQ5 nuclear dye. 39:1-39:9 - Tianyu Wang, Boyang Li, Craig E. Nelson, Sheida Nabavi
:
Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data. 40:1-40:16 - Jingrong Zhang, Zihao Wang, Yu Chen, Renmin Han
, Zhiyong Liu, Fei Sun, Fa Zhang:
PIXER: an automated particle-selection method based on segmentation using a deep neural network. 41:1-41:14 - Christine P'ng, Jeffrey Green, Lauren C. Chong, Daryl Waggott, Stephenie D. Prokopec, Mehrdad Shamsi, Francis Nguyen, Denise Y. F. Mak, Felix Lam, Marco A. Albuquerque, Ying Wu, Esther H. Jung, Maud H. W. Starmans, Michelle A. Chan-Seng-Yue
, Cindy Q. Yao, Bianca Liang, Emilie Lalonde
, Syed Haider, Nicole A. Simone, Dorota H. Sendorek, Kenneth C. Chu, Nathalie C. Moon, Natalie S. Fox, Michal R. Grzadkowski, Nicholas J. Harding, Clement Fung, Amanda R. Murdoch, Kathleen E. Houlahan, Jianxin Wang, David R. Garcia, Richard de Borja, Ren X. Sun, Xihui Lin, Gregory M. Chen, Aileen Lu, Yu-Jia Shiah, Amin Zia, Ryan Kearns, Paul C. Boutros
:
BPG: Seamless, automated and interactive visualization of scientific data. 42:1-42:5 - Sunita Chandrasekaran, Eric Stahlberg:
Correction to: Computational approaches for cancer 2017 workshop overview. 43:1 - Dong Wei, Chuanying Liu, Xiaoqi Zheng, Yushuang Li
:
Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model. 44:1-44:15 - Aleksandr Igorevich Zhernakov
, Alexey Mikhailovich Afonin, Natalia Dmitrievna Gavriliuk, Olga Mikhailovna Moiseeva, Vladimir Aleksandrovich Zhukov:
s-dePooler: determination of polymorphism carriers from overlapping DNA pools. 45:1-45:6 - Xinyuan Zhang, Anna Okula Basile, Sarah A. Pendergrass
, Marylyn D. Ritchie:
Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico. 46:1-46:10 - Qiangwei Zhou
, Jing-Quan Lim, Wing-Kin Sung
, Guoliang Li
:
An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping. 47:1-47:11 - Qiu Xiao, Jiawei Luo, Cheng Liang, Jie Cai, Guanghui Li, Buwen Cao:
CeModule: an integrative framework for discovering regulatory patterns from genomic data in cancer. 67:1-67:13 - Tra-My Ngo, Yik-Ying Teo
:
Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms. 68:1-68:9 - Jin Yao
, Mark Hurle, Matthew R. Nelson, Pankaj Agarwal:
Predicting clinically promising therapeutic hypotheses using tensor factorization. 69:1-69:12 - Amira Al-Aamri, Kamal Taha
, Yousof Al-Hammadi
, Maher Maalouf, Dirar Homouz:
Analyzing a co-occurrence gene-interaction network to identify disease-gene association. 70:1-70:15 - Kamal Taha
, Youssef Iraqi
, Amira Al-Aamri:
Predicting protein functions by applying predicate logic to biomedical literature. 71:1-71:15 - Dat Quoc Nguyen
, Karin Verspoor
:
From POS tagging to dependency parsing for biomedical event extraction. 72:1-72:13 - Minoo Ashtiani, Payman Nickchi, Soheil Jahangiri-Tazehkand, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari
:
IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis. 73:1-73:4 - Sunjoo Bang, Sangjoon Son, Sooyoung Kim
, Hyunjung Shin
:
Disease Pathway Cut for Multi-Target drugs. 74:1-74:12 - Yongzhi Yang, Ying Li, Qiao Chen, Yongshuai Sun
, Zhiqiang Lu:
WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations. 75:1-75:6 - Anghong Xiao, Zongze Wu, Shoubin Dong:
ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark. 76:1-76:13 - Hyrum D. Carroll
, John L. Spouge, Mileidy Gonzalez:
MultiDomainBenchmark: a multi-domain query and subject database suite. 77:1-77:9 - Jimmy F. Zhang, Alex R. Paciorkowski, Paul A. Craig
, Feng Cui
:
BioVR: a platform for virtual reality assisted biological data integration and visualization. 78:1-78:10 - Giovanni Scala
, Angela Serra, Veer Singh Marwah, Laura Aliisa Saarimäki
, Dario Greco
:
FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments. 79:1-79:7 - Kaisa Liimatainen
, Lauri Kananen, Leena Latonen, Pekka Ruusuvuori
:
Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks. 80:1-80:10 - Joshua Williams, Ruoting Yang
, John L. Clifford, Daniel Watson, Ross Campbell, Derese Getnet, Raina Kumar, Rasha Hammamieh
, Marti Jett:
Functional Heatmap: an automated and interactive pattern recognition tool to integrate time with multi-omics assays. 81:1-81:6 - Jake Alan Pitt
, Julio R. Banga
:
Parameter estimation in models of biological oscillators: an automated regularised estimation approach. 82:1-82:17 - Arnaud Amzallag
, Sridhar Ramaswamy, Cyril H. Benes:
Statistical assessment and visualization of synergies for large-scale sparse drug combination datasets. 83:1-83:15 - Irina Kuznetsova, Artur Lugmayr, Stefan J. Siira
, Oliver Rackham
, Aleksandra Filipovska
:
CirGO: an alternative circular way of visualising gene ontology terms. 84:1-84:7 - Xionghui Zhou
, Xin-Yi Chu, Gang Xue, Jiang-Hui Xiong, Hong-Yu Zhang:
Identifying cancer prognostic modules by module network analysis. 85:1-85:11 - Hongli Fu, Yingxi Yang
, Xiaobo Wang, Hui Wang, Yan Xu
:
DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins. 86:1-86:10 - Xiao-Nan Fan, Shao-Wu Zhang
, Song-Yao Zhang, Kunju Zhu
, Songjian Lu:
Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information. 87:1-87:12 - Yoann Dufresne
, Franck Lejzerowicz
, Laure Apotheloz Perret-Gentil, Jan Pawlowski
, Tristan Cordier
:
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data. 88:1-88:6 - Di Du
, Lin Tan, Yumeng Wang, Bo Peng, John N. Weinstein
, Fredric E. Wondisford, Xiaoyang Su
, Philip L. Lorenzi:
ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments. 89:1-89:9 - Taewoon Joo, Ji-Hye Choi, Ji-Hye Lee, So Eun Park, Youngsic Jeon, Sae Hoon Jung, Hyun Goo Woo
:
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package. 90:1-90:7 - Fatemeh Mansoori, Maseud Rahgozar
, Kaveh Kavousi
:
FoPA: identifying perturbed signaling pathways in clinical conditions using formal methods. 92:1-92:21 - Yifeng Cui, Qiwen Dong, Daocheng Hong, Xikun Wang:
Predicting protein-ligand binding residues with deep convolutional neural networks. 93:1-93:12 - Zaixiang Tang, Shufeng Lei, Xinyan Zhang
, Zixuan Yi, Boyi Guo
, Jake Y. Chen
, Yueping Shen, Nengjun Yi:
Gsslasso Cox: a Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information. 94:1-94:15 - Svetlana Vinogradova
, Sachit D. Saksena, Henry N. Ward, Sébastien Vigneau, Alexander A. Gimelbrant
:
MaGIC: a machine learning tool set and web application for monoallelic gene inference from chromatin. 106:1-106:5 - Noemi Di Nanni
, Marco Moscatelli, Matteo Gnocchi, Luciano Milanesi
, Ettore Mosca
:
isma: an R package for the integrative analysis of mutations detected by multiple pipelines. 107:1-107:9 - Arthur T. O. Melo, Iago Hale
:
'apparent': a simple and flexible R package for accurate SNP-based parentage analysis in the absence of guiding information. 108:1-108:10 - Bing Zhang, Huihui Ren
, Guoyan Huang, Yongqiang Cheng
, Changzhen Hu:
Predicting blood pressure from physiological index data using the SVR algorithm. 109:1-109:15 - Adam Price
, Adrian Caciula, Cheng Guo, Bohyun Lee, Juliet Morrison, Angela Rasmussen, W. Ian Lipkin, Komal Jain:
DEvis: an R package for aggregation and visualization of differential expression data. 110:1-110:7 - Leijie Li, Dongxue Che, Xiaodan Wang, Peng Zhang, Siddiq Ur Rahman, Jianbang Zhao, Jiantao Yu, Shiheng Tao, Hui Lu
, Mingzhi Liao
:
CellSim: a novel software to calculate cell similarity and identify their co-regulation networks. 111:1-111:9 - Fuyi Li
, Yang Zhang, Anthony W. Purcell
, Geoffrey I. Webb, Kuo-Chen Chou, Trevor Lithgow, Chen Li
, Jiangning Song
:
Positive-unlabelled learning of glycosylation sites in the human proteome. 112:1-112:17 - Artyom A. Egorov
, Ekaterina A. Sakharova
, Aleksandra S. Anisimova
, Sergey E. Dmitriev, Vadim N. Gladyshev
, Ivan V. Kulakovskiy
:
svist4get: a simple visualization tool for genomic tracks from sequencing experiments. 113:1-113:6 - Pawel Blazej
, Malgorzata Wnetrzak
, Dorota Mackiewicz
, Pawel Mackiewicz
:
The influence of different types of translational inaccuracies on the genetic code structure. 114:1-114:14 - Karl Stamm, Aoy Tomita-Mitchell, Serdar Bozdag
:
GSEPD: a Bioconductor package for RNA-seq gene set enrichment and projection display. 115:1-115:6 - Héléna A. Gaspar
, Gerome Breen
:
Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics. 116:1-116:11 - Marco Di Salvo, Simone Puccio
, Clelia Peano
, Stephan Lacour
, Pietro Alifano
:
RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases. 117:1-117:11 - Burçak Otlu
, Tolga Can
:
JOA: Joint Overlap Analysis of multiple genomic interval sets. 121:1-121:14 - Brian B. Merritt, Lily S. Cheung
:
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes. 122:1-122:7 - Matt Ravenhall
, Susana G. Campino
, Taane G. Clark
:
SV-Pop: population-based structural variant analysis and visualization. 136:1-136:4 - Qingchen Zhang, Lu Zhang, Chen Zhou, Yiyan Yang, Zuojing Yin, Dingfeng Wu, Kailin Tang
, Zhiwei Cao
:
DSab-origin: a novel IGHD sensitive VDJ mapping method and its application on antibody response after influenza vaccination. 137:1-137:9 - Bastien Kovac, Jérôme Fehrenbach
, Ludivine Guillaume, Pierre Weiss:
FitEllipsoid: a fast supervised ellipsoid segmentation plugin. 142:1-142:8 - Vu Viet Hoang Pham
, Junpeng Zhang, Lin Liu
, Buu Minh Thanh Truong, Taosheng Xu, Trung T. Nguyen, Jiuyong Li
, Thuc Duy Le
:
Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction. 143:1-143:12 - Christine Winter, Robin Kosch, Martin Ludlow, Albert Osterhaus, Klaus Jung
:
Network meta-analysis correlates with analysis of merged independent transcriptome expression data. 144:1-144:10 - Khong-Loon Tiong
, Chen-Hsiang Yeang
:
MGSEA - a multivariate Gene set enrichment analysis. 145:1-145:22 - Pengfei Wang, Wensheng Zhu:
Replicability analysis in genome-wide association studies via Cartesian hidden Markov models. 146:1-146:12 - Daehong Kwon, Jongin Lee, Jaebum Kim
:
GMASS: a novel measure for genome assembly structural similarity. 147:1-147:9 - Konrad Zych, Gerrit Gort, Chris A. Maliepaard, Ritsert C. Jansen, Roeland E. Voorrips
:
FitTetra 2.0 - improved genotype calling for tetraploids with multiple population and parental data support. 148:1-148:8 - Ronald Smith, Taliesin J. Kinser, Gregory D. Conradi Smith
, Joshua R. Puzey
:
A likelihood ratio test for changes in homeolog expression bias. 149:1-149:11 - Maria Beatriz Walter Costa, Christian Höner zu Siederdissen
, Marko Dunjic, Peter F. Stadler
, Katja Nowick
:
SSS-test: a novel test for detecting positive selection on RNA secondary structure. 151:1-151:19 - Yu Xu, Zhe Lin, Chong Tang, Yujing Tang, Yue Cai, Hongbin Zhong, Xuebin Wang
, Wenwei Zhang, Chongjun Xu, Jingjing Wang, Jian Wang, Huanming Yang, Linfeng Yang, Qiang Gao:
A new massively parallel nanoball sequencing platform for whole exome research. 153:1-153:9 - Refael Kohen, Jonathan Barlev, Gil Hornung, Gil Stelzer, Ester Feldmesser, Kiril Kogan, Marilyn Safran, Dena Leshkowitz
:
UTAP: User-friendly Transcriptome Analysis Pipeline. 154:1-154:7 - Meng Liu, Paul D. Thomas
:
GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness. 155:1-155:15 - Ilknur Karadeniz
, Arzucan Özgür:
Linking entities through an ontology using word embeddings and syntactic re-ranking. 156:1-156:12 - Tobias Zehnder
, Philipp Benner, Martin Vingron:
Predicting enhancers in mammalian genomes using supervised hidden Markov models. 157:1-157:12 - Lei Cui, Jun Feng
, Zizhao Zhang, Lin Yang:
High throughput automatic muscle image segmentation using parallel framework. 158:1-158:9 - Daniel Perez-Gil, Francisco J. Lopez, Joaquín Dopazo, Pablo Marín-García
, Augusto Rendon, Ignacio Medina
:
PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources. 159:1-159:5 - Divy Kangeyan, Andrew J. Dunford, Sowmya Iyer, Chip Stewart, Megan Hanna, Gad Getz, Martin J. Aryee
:
A (fire)cloud-based DNA methylation data preprocessing and quality control platform. 160:1-160:5 - Guangsheng Wu, Juan Liu, Xiang Yue
:
Prediction of drug-disease associations based on ensemble meta paths and singular value decomposition. 134:1-134:13 - Yan Zhou, Jiadi Zhu, Tiejun Tong
, Junhui Wang, Bingqing Lin, Jun Zhang:
A statistical normalization method and differential expression analysis for RNA-seq data between different species. 163:1-163:10 - Wei Gu
, Reha Yildirimman, Emmanuel Van der Stuyft, Denny Verbeeck, Sascha Herzinger, Venkata P. Satagopam
, Adriano Barbosa-Silva
, Reinhard Schneider
, Bodo M. H. Lange, Hans Lehrach, Yike Guo, David Henderson
, Anthony Rowe
:
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. 164:1-164:11 - Miriam Gjerdevik
, Astanand Jugessur, Øystein A. Haaland, Julia Romanowska, Rolv T. Lie, Heather J. Cordell
, Håkon K. Gjessing:
Haplin power analysis: a software module for power and sample size calculations in genetic association analyses of family triads and unrelated controls. 165:1-165:11 - Daphne Ezer
, Joseph Keir:
NITPicker: selecting time points for follow-up experiments. 166:1-166:10 - Patrik Waldmann
, Maja Ferencakovic
, Gábor Mészáros, Negar Khayatzadeh, Ino Curik, Johann Sölkner
:
AUTALASSO: an automatic adaptive LASSO for genome-wide prediction. 167:1-167:10 - Wei Li Wang, Zhou Yu, Luis R. Castillo-Menendez, Joseph Sodroski, Youdong Mao
:
Robustness of signal detection in cryo-electron microscopy via a bi-objective-function approach. 169:1-169:17 - Yosef Masoudi-Sobhanzadeh
, Habib Motieghader
, Ali Masoudi-Nejad:
FeatureSelect: a software for feature selection based on machine learning approaches. 170:1-170:17 - Matthew McCoy
, Vikram Shivakumar, Sridhar Nimmagadda, Mohsin Saleet Jafri, Subha Madhavan:
SNP2SIM: a modular workflow for standardizing molecular simulation and functional analysis of protein variants. 171:1-171:8 - W. Garrett Jenkinson, Jordi Abante
, Michael A. Koldobskiy, Andrew P. Feinberg, John Goutsias
:
Ranking genomic features using an information-theoretic measure of epigenetic discordance. 175:1-175:17 - Jianfeng Cao
, Ming-Kin Wong, Zhongying Zhao, Hong Yan:
3DMMS: robust 3D Membrane Morphological Segmentation of C. elegans embryo. 176:1-176:13 - Suyan Tian
:
Identification of monotonically differentially expressed genes for non-small cell lung cancer. 177:1-177:9 - Kathrin Blagec
, Hong Xu, Asan Agibetov
, Matthias Samwald
:
Neural sentence embedding models for semantic similarity estimation in the biomedical domain. 178:1-178:10 - Ousmane H. Cissé
, Jason E. Stajich
:
FGMP: assessing fungal genome completeness. 184:1-184:9 - Yun Zhang
, Gautam Bandyopadhyay
, David J. Topham, Ann R. Falsey, Xing Qiu
:
Highly efficient hypothesis testing methods for regression-type tests with correlated observations and heterogeneous variance structure. 185:1-185:14 - Ana M. Untaroiu, Maureen A. Carey
, Jennifer L. Guler
, Jason A. Papin
:
Leveraging the effects of chloroquine on resistant malaria parasites for combination therapies. 186:1-186:9 - Hsiang-Yun Wu
, Martin Nöllenburg, Filipa L. Sousa
, Ivan Viola
:
Metabopolis: scalable network layout for biological pathway diagrams in urban map style. 187:1-187:20 - Nhan Thi Ho, Fan Li, Shuang Wang, Louise Kuhn:
metamicrobiomeR: an R package for analysis of microbiome relative abundance data using zero-inflated beta GAMLSS and meta-analysis across studies using random effects models. 188:1-188:15 - Julián Candia
, John S. Tsang:
eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models. 189:1-189:11 - Thomas Gatter
, Peter F. Stadler
:
Ryūtō: network-flow based transcriptome reconstruction. 190:1-190:14 - Lubna Pinky
, Gilberto C. González-Parra
, Hana M. Dobrovolny
:
Effect of stochasticity on coinfection dynamics of respiratory viruses. 191:1-191:12 - Maria Littmann
, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén
, Burkhard Rost
:
Detailed prediction of protein sub-nuclear localization. 205:1-205:15 - Jolanda H. M. van Bilsen
, Lars Verschuren, Laura Wagenaar, Marlotte M. Vonk, Betty C. A. M. van Esch, Léon M. J. Knippels, Johan Garssen, Joost J. Smit
, Raymond H. H. Pieters, Tim J. van den Broek:
A network-based approach for identifying suitable biomarkers for oral immunotherapy of food allergy. 206:1-206:11 - Bastian Pfeifer
, Durrell D. Kapan
:
Estimates of introgression as a function of pairwise distances. 207:1-207:11 - Marek Palkowski
, Wlodzimierz Bielecki
:
Tiling Nussinov's RNA folding loop nest with a space-time approach. 208:1-208:11 - Stefan Hammer
, Wei Wang, Sebastian Will
, Yann Ponty:
Fixed-parameter tractable sampling for RNA design with multiple target structures. 209:1-209:13 - Daniele Ramazzotti
, Alex Graudenzi
, Luca De Sano
, Marco Antoniotti, Giulio Caravagna
:
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data. 210:1-210:13 - Ahmed Bin Zaman, Amarda Shehu:
Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure prediction. 211:1-211:17 - Sara Rahiminejad, Mano Ram Maurya, Shankar Subramaniam:
Topological and functional comparison of community detection algorithms in biological networks. 212:1-212:25 - Alfredo Iacoangeli
, Ahmad Al Khleifat
, William Sproviero
, Aleksey Shatunov
, A. R. Jones, S. L. Morgan, A. Pittman, Richard J. B. Dobson
, S. J. Newhouse, Ammar Al-Chalabi
:
DNAscan: personal computer compatible NGS analysis, annotation and visualisation. 213:1-213:10