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Computer Physics Communications, Volume 180
Volume 180, Number 1, January 2009
- Hezhu Shao
, Zhongcheng Wang:
Arbitrarily precise numerical solutions of the one-dimensional Schrödinger equation. 1-7 - Benjamin C. Allanach
, Csaba Balázs
, Geneviève Bélanger, M. Bernhardt, Fawzi Boudjema
, D. Choudhury, Klaus Desch, Ulrich Ellwanger, Paolo Gambino
, R. Godbole, Toru Goto
, Jaume Guasch
, M. Guchait, Thomas Hahn, Sven Heinemeyer
, Cyril Hugonie, T. Hurth, Sabine Kraml
, Sven Kreiss
, J. Lykken:
SUSY Les Houches Accord 2. 8-25 - Nigel Cundy, Stefan Krieg
, Guido Arnold, Andreas Frommer, Thomas Lippert, Klaus Schilling:
Numerical methods for the QCD overlap operator IV: Hybrid Monte Carlo. 26-54 - Hong Wei Yang:
A FDTD analysis on magnetized plasma of Epstein distribution and reflection calculation. 55-60
- Cong-Feng Qiao, Jian Wang, Jian-Xiong Wang
, Yangheng Zheng:
EtabFDC: An etab event generator in hadroproduction at LHC. 61-68 - Wojciech Broniowski
, Maciej Rybczynski
, Piotr Bozek
:
GLISSANDO: GLauber Initial-State Simulation AND mOre... 69-83 - S. Wheaton, J. Cleymans, M. Hauer:
THERMUS - A thermal model package for ROOT. 84-106 - James Gray, Yang-Hui He
, Anton Ilderton
, André Lukas
:
STRINGVACUA. A Mathematica package for studying vacuum configurations in string phenomenology. 107-119 - G. P. Salam, Juan Rojo
:
A Higher Order Perturbative Parton Evolution Toolkit (HOPPET). 120-156 - Alberto Otero-de-la-Roza
, M. A. Blanco, Ángel Martín Pendás
, Víctor Luaña:
Critic: a new program for the topological analysis of solid-state electron densities. 157-166
Volume 180, Number 2, February 2009
- Zacharoula Kalogiratou
, Theodoros Monovasilis, Tom E. Simos:
Computation of the eigenvalues of the Schrödinger equation by exponentially-fitted Runge-Kutta-Nyström methods. 167-176 - J. G. Jiang, Y. N. Huang:
Simulation of distribution of random walks on a lattice. 177-179 - Nigel Cundy:
Low-lying Wilson Dirac operator eigenvector mixing in dynamical overlap hybrid Monte Carlo. 180-191 - Guang-Hui Cheng, Ting-Zhu Huang
, Shu-Qian Shen:
Block triangular preconditioners for the discretized time-harmonic Maxwell equations in mixed form. 192-196 - Jean-Paul Brichta, Aden N. Seaman, Joseph H. Sanderson:
Ultrafast imaging of polyatomic molecules with simplex algorithm. 197-200 - Nigel Cundy, Stefan Krieg
, Thomas Lippert, Andreas Schäfer:
Topological tunnelling with dynamical overlap fermions. 201-208 - Yong Duan, P. F. Tang, Ting-Zhu Huang
, Sheng-Jian Lai:
Coupling projection domain decomposition method and Kansa's method in electrostatic problems. 209-214 - Attilio Cucchieri
, Axel Maas
, Tereza Mendes
:
Linear covariant gauges on the lattice. 215-225 - D. Portes Jr., Hilario Rodrigues, Basílio Baseia
, Sérgio B. Duarte:
Computational procedure to determine quantum state evolution in Fock space. 226-230 - Byoungseon Jeon, Niels Grønbech-Jensen
:
Efficient parallel algorithm for statistical ion track simulations in crystalline materials. 231-237 - Armen H. Poghosyan, Aram A. Shahinyan:
A new parameter for validation molecular dynamics simulation (MD) data. 238-240 - Veerle Ledoux, Marnix Van Daele, Guido Vanden Berghe:
Efficient computation of high index Sturm-Liouville eigenvalues for problems in physics. 241-250 - Panagiotis Vlachos, Ioannis Karafyllidis
:
Simulation of quantum key expansion using quantum cellular automata. 251-255 - Khatuna Kakhiani
, Kakha Tsereteli
, Paata Tsereteli:
A program to generate a basis set adaptive radial quadrature grid for density functional theory. 256-268 - A. Nappi:
A pitfall in the use of extended likelihood for fitting fractions of pure samples in a mixed sample. 269-275
- M. Souaille, H. Loirat, Daniel Borgis, Marie-Pierre Gaigeot:
MDVRY: a polarizable classical molecular dynamics package for biomolecules. 276-301 - Dirk Engel, Matthias Klews, Günter Wunner:
A fast parallel code for calculating energies and oscillator strengths of many-electron atoms at neutron star magnetic field strengths in adiabatic approximation. 302-311 - J. S. Lee, M. Carena
, J. Ellis, Apostolos Pilaftsis
, Carlos E. M. Wagner
:
CPsuperH2.0: An improved computational tool for Higgs phenomenology in the MSSM with explicit CP violation. 312-331 - J. D. Talman:
NumSBT: A subroutine for calculating spherical Bessel transforms numerically. 332-338
Volume 180, Number 3, March 2009
- V. A. Kudryavtsev:
Muon simulation codes MUSIC and MUSUN for underground physics. 339-346 - Christoph Friedrich
, Arno Schindlmayr
, Stefan Blügel
:
Efficient calculation of the Coulomb matrix and its expansion around k=0 within the FLAPW method. 347-359 - Pedro Gonnet
, Jens H. Walther
, Petros Koumoutsakos
:
theta-SHAKE: An extension to SHAKE for the explicit treatment of angular constraints. 360-364 - Takayuki Umeda
, Kentaro Togano, Tatsuki Ogino:
Two-dimensional full-electromagnetic Vlasov code with conservative scheme and its application to magnetic reconnection. 365-374 - Chia-Chien Huang
:
Semiconductor nanodevice simulation by multidomain spectral method with Chebyshev, prolate spheroidal and Laguerre basis functions. 375-383 - Simone Orlandini, Isabella Baccarelli
, Francesco A. Gianturco:
Variational calculations of structures and energetics in very floppy trimers: A new computational implementation. 384-391 - V. A. Dzuba:
An universal algorithm of calculating terms of atomic many-body perturbation theory. 392-400
- Alessandro Ballestrero, Aissa Belhouari, Giuseppe Bevilacqua
, Vladimir Kashkan, Ezio Maina
:
PHANTOM: A Monte Carlo event generator for six parton final states at high energy colliders. 401-417 - J. Brandon Keith, Jacob R. Fennick, Chad E. Junkermeier
, Daniel R. Nelson, James P. Lewis:
A web-deployed interface for performing ab initio molecular dynamics, optimization, and electronic structure in Fireball. 418-426 - Michele Caffo, Henryk Czyz
, Michal Gunia, Ettore Remiddi:
BOKASUN: A fast and precise numerical program to calculate the Master Integrals of the two-loop sunrise diagrams. 427-430 - A. V. Semenov:
LanHEP - a package for the automatic generation of Feynman rules in field theory. Version 3.0. 431-454 - Friedemann Reinhard, Oliver F. Lange, Jochen S. Hub
, Jürgen Haas, Helmut Grubmüller:
g_permute: Permutation-reduced phase space density compaction. 455-458 - Dimitris Skouteris, Osvaldo Gervasi
, Antonio Laganà:
A program for performing exact quantum dynamics calculations using cylindrical polar coordinates: A nanotube application. 459-465 - Zhe Yuan
, Shiwu Gao:
Linear response approach to collective electronic excitations of solids and surfaces. 466-473
- Bruno Juliá-Díaz
, Joseph M. Burdis, Frank Tabakin
:
QDENSITY - A Mathematica quantum computer simulation. 474
Volume 180, Number 4, April 2009
- João Antônio Plascak, Américo Tristão Bernardes
:
CCP2008 - Modeling a better world. - Thomas Wüst
, D. P. Landau, Claire Gervais
, Y. Xu:
Monte Carlo simulations of systems with complex energy landscapes. 475-479 - Mário J. de Oliveira
:
Glassy states in the stochastic Potts model. 480-484 - Shan-Ho Tsai, D. P. Landau:
Phase diagram of a two-dimensional large-Q Potts model in an external field. 485-487 - Ernesto S. Loscar, Ezequiel V. Albano:
Hysteretic effects in the first-order irreversible phase transition of the ZGB model. 488-492 - Bertrand Berche
, P. Butera, Wolfhard Janke, Lev N. Shchur:
Universal ratios of critical amplitudes in the Potts model universality class. 493-496 - Marco G. Mazza
, Kevin Stokely, Elena G. Strekalova, Harry Eugene Stanley, Giancarlo Franzese
:
Cluster Monte Carlo and numerical mean field analysis for the water liquid-liquid phase transition. 497-502 - L. Nduwayo, R. Lindebaum, Nithaya Chetty:
Suppressed bond-site percolation. 503-508 - Thomas E. Booth, James E. Gubernatis:
Sewing algorithm. 509-511 - Tuomas Tallinen, Jan A. Åström, Jussi Timonen:
Discrete element simulations of crumpling of thin sheets. 512-516 - Janos M. Kumpula, Jukka-Pekka Onnela, Jari Saramäki, János Kertész, Kimmo Kaski
:
Model of community emergence in weighted social networks. 517-522 - Mary Luz Mouronte, Rosa M. Benito
, Juan Pablo Cárdenas, Antonio Santiago, Vicente Feliú Batlle, P. van Wijngaarden, Luis Gregorio Moyano:
Complexity in Spanish optical fiber and SDH transport networks. 523-526 - Gabriel Baglietto, Ezequiel V. Albano:
Computer simulations of the collective displacement of self-propelled agents. 527-531 - Enrique Burgos, Horacio Ceva, Laura Hernández
, R. P. J. Perazzo:
Understanding and characterizing nestedness in mutualistic bipartite networks. 532-535 - Tânia Tomé
, Áttila Leães Rodrigues
, Everaldo Arashiro
, Mário J. de Oliveira
:
The stochastic nature of predator-prey cycles. 536-539 - Marcos Rigol
, Rajiv R. P. Singh:
Thermodynamic properties of quantum lattice models from numerical linked cluster expansions. 540-544 - Przemyslaw Klosiewicz, Jan Broeckhove, Wim Vanroose
:
Using pseudo-arclength continuation to trace the resonances of the Schrödinger equation. 545-548 - Myoung Won Cho, Sul-Ah Ahn:
Efficient and exact computation of Hubbard and t-J models using quantum diagonalization method. 549-554 - Norbert Attig
:
Computational physics with PetaFlops computers. 555-558 - Jamie Shiers:
Grid today, clouds on the horizon. 559-563 - Gastao Krein
, J. M. Machado, A. O. Pereira:
Dynamics of the deconfinement transition of quarks and gluons in a finite volume. 564-573 - R. L. S. Farias, Rudnei O. Ramos
, L. A. da Silva:
Numerical solutions for non-Markovian stochastic equations of motion. 574-579 - Joan Adler, Polina Pine:
Visualization techniques for modelling carbon allotropes. 580-582 - A. G. Cunha-Netto, Ronald Dickman, A. A. Caparica:
Two-dimensional lattice polymers: Adaptive windows simulations. 583-586 - D. T. Seaton, Thomas Wüst
, D. P. Landau:
A Wang-Landau study of the phase transitions in a flexible homopolymer. 587-589 - Cláudio José DaSilva, A. G. Cunha-Netto, Ronald Dickman, A. A. Caparica:
Constructing ground state configurations of lattice polymers. 590-593 - Aimee Gotway Bailey, C. P. Lowe, A. P. Sutton:
REVLD: A coarse-grained model for polymers. 594-599 - Marcus Müller
, C. Pastorino, J. Servantie:
Hydrodynamic boundary condition of polymer melts at simple and complex surfaces. 600-604 - Burkhard Dünweg
, Ulf D. Schiller
, Anthony J. C. Ladd:
Progress in the understanding of the fluctuating lattice Boltzmann equation. 605-608 - Eric J. R. Parteli
, Murilo P. Almeida
, Orencio Durán
, José S. Andrade Jr.
, Hans J. Herrmann:
Sand transport on Mars. 609-611 - Allbens Picardi Faria Atman, P. Claudin, Gaël Combe
:
Departure from elasticity in granular layers: Investigation of a crossover overload force. 612-615 - William F. Oquendo
, José D. Muñoz, A. Lizcano:
Oedometric test, Bauer's law and the micro-macro connection for a dry sand. 616-620 - Reinaldo R. Rosa
, Fernando Manuel Ramos, Cesar A. Caretta, Haroldo F. de Campos Velho:
Extreme event dynamics in the formation of galaxy-sized dark matter structures. 621-624 - Naoki Yoshida
:
Supercomputer simulations of structure formation in the Universe. 625-627 - Sang Ki Nam, John P. Verboncoeur:
Global model for high power microwave breakdown at high pressure in air. 628-635 - Seung Min Lee, Yong Jun Hong, Young Sik Seo, Felipe Iza, Gyoo Cheon Kim, Jae Koo Lee:
Simulations of biomedical atmospheric-pressure discharges. 636-641 - Tiago Kroetz
, F. A. Marcus, Marisa Roberto, Iberê L. Caldas, Ricardo Luiz Viana
, E. C. da Silva:
Transport control in fusion plasmas by changing electric and magnetic field spatial profiles. 642-650 - Min Sup Hur, Jonathan S. Wurtele
:
Two-dimensional simulations of the amplification and focusing of intense laser pulses in the kinetic regime of Raman backward amplification in plasmas. 651-655 - Y. C. Chuang, J. Y. Hsu:
Particle-in-cell study of microwave confined plasma. 656-658 - J.-Y. Lin, Y.-H. Tang, Min-Hsiung Tsai:
Electronic structures of the Si(001) thin film under (110)- and (010)-direction uniaxial tensile strains. 659-663 - Fortunato Silva de Menezes
, Davi Geiger, Ricardo Martins Abreu e Silva, George Distler, Arefin Hu:
Forward-backward study of the stereo vision problem. 664-668
Volume 180, Number 5, May 2009
- Tao Wei, Shengjing Mu, Aiichiro Nakano, Katherine Shing:
A hybrid multi-loop genetic-algorithm/simplex/spatial-grid method for locating the optimum orientation of an adsorbed protein on a solid surface. 669-674 - Stanislaw Jadach, Wieslaw Placzek
, Maciej Skrzypek, P. Stephens, Zbigniew Was
:
Constrained MC for QCD evolution with rapidity ordering and minimum kT. 675-698 - Shyamal Bhar, Soumen Kumar Roy:
Computer simulation of two continuous spin models using Wang-Landau-Transition-Matrix Monte Carlo algorithm. 699-707 - A. S. V. Ravi Kanth, K. Aruna
:
Differential transform method for solving the linear and nonlinear Klein-Gordon equation. 708-711 - Jacinto Javier Ibáñez
, Vicente Hernández, Enrique Arias
, Pedro A. Ruiz:
Solving Initial Value Problems for Ordinary Differential Equations by two approaches: BDF and piecewise-linearized methods. 712-723
- Sridhar Sahu, Alok Shukla
:
Fortran 90 implementation of the Hartree-Fock approach within the CNDO/2 and INDO models. 724-734 - A. V. Smirnov, M. N. Tentyukov:
Feynman Integral Evaluation by a Sector decomposiTion Approach (FIESTA). 735-746 - Geneviève Bélanger, Fawzi Boudjema
, Alexander Pukhov
, A. Semenov:
Dark matter direct detection rate in a generic model with micrOMEGAs_2.2. 747-767 - Juan-Luis Domenech-Garret, Miguel-Angel Sanchis-Lozano
:
QQ-onia package: a numerical solution to the Schrödinger radial equation for heavy quarkonium. 768-778 - I. P. Lokhtin, L. V. Malinina, S. V. Petrushanko, A. M. Snigirev, I. Arsene, Konrad Tywoniuk
:
Heavy ion event generator HYDJET++ (HYDrodynamics plus JETs). 779-799 - Alberto Otero-de-la-Roza
, Víctor Luaña:
Runwien: a text-based interface for the WIEN package. 800-812
Volume 180, Number 6, June 2009
- Michele Della Morte
, Leonardo Giusti
:
Exploiting symmetries for exponential error reduction in path integral Monte Carlo. 813-818 - Michele Della Morte
, Leonardo Giusti
:
Symmetries and exponential error reduction in Yang-Mills theories on the lattice. 819-826 - Sumie Yamamoto, Keisuke Fujii
, Akiya Miyamoto:
A handy tool for history keeping of Geant4 tracks - J4HistoryKeeper. 827-834 - L. Welser-Sherrill, J. H. Cooley, D. C. Wilson:
Interactive tools designed to study mix in inertial confinement fusion implosions. 835-841 - Zhongcheng Wang, Hezhu Shao
:
A new kind of discretization scheme for solving a two-dimensional time-independent Schrödinger equation. 842-849 - C. Timbó, Luiz Antonio Ribeiro da Rosa, Marcello Gonçalves, S. B. Duarte:
Computational cancer cells identification by fractal dimension analysis. 850-853 - Rong Zeng, Yanzhi Zhang:
Efficiently computing vortex lattices in rapid rotating Bose-Einstein condensates. 854-860 - Diego Molteni, Andrea Colagrossi
:
A simple procedure to improve the pressure evaluation in hydrodynamic context using the SPH. 861-872 - Mehdi Dehghan
, Narges Rastegar:
On the global behavior of a high-order rational difference equation. 873-878 - Charlotte Froese Fischer, Oleg Zatsarinny:
A B-spline Galerkin method for the Dirac equation. 879-886 - M. V. Umansky, X. Q. Xu, Ben Dudson
, Lynda L. LoDestro, J. R. Myra:
Status and verification of edge plasma turbulence code BOUT. 887-903 - Kui Fu Chen, Jing Tao Jiang, Stephen Crowsen:
Against the long-range spectral leakage of the cosine window family. 904-911 - Adrian Alexandrescu, Alfonso Bueno-Orovio
, José R. Salgueiro, Víctor M. Pérez-García
:
Mapped Chebyshev pseudospectral method for the study of multiple scale phenomena. 912-919 - Janis Timoshenko
, Alexei Kuzmin
:
Wavelet data analysis of EXAFS spectra. 920-925 - Shing-Lin Chang, Cheng-Sheng Chien:
Computing multiple peak solutions for Bose-Einstein condensates in optical lattices. 926-947
- Frank Tabakin
, Bruno Juliá-Díaz
:
QCMPI: A parallel environment for quantum computing. 948-964 - Reinhard Alkofer, Markus Q. Huber
, K. Schwenzer
:
Algorithmic derivation of Dyson-Schwinger equations. 965-976 - Rafael Ramis
, Jürgen Meyer-ter-Vehn, Julio Ramírez:
MULTI2D - a computer code for two-dimensional radiation hydrodynamics. 977-994 - Vladimir Horvat:
ERCS08: A FORTRAN program equipped with a Windows graphics user interface that calculates ECPSSR cross sections for the removal of atomic electrons. 995-1003 - Ling Ti Kong
, Guido Bartels, Carlos Campañá, Colin Denniston
, Martin H. Müser
:
Implementation of Green's function molecular dynamics: An extension to LAMMPS. 1004-1010
- Ochbadrakh Chuluunbaatar
, A. A. Gusev, Vladimir P. Gerdt, V. A. Rostovtsev, Sergey I. Vinitsky
, A. G. Abrashkevich, Michail S. Kaschiev, Vladislav V. Serov
:
Erratum to: Program AEAA_v1_0, "POTHMF: A program for computing potential curves and matrix elements of the coupled adiabatic radial equations for a hydrogen-like atom in a homogeneous magnetic field" [Computer Physics Communications 178 (2008) 301]. 1011 - Ochbadrakh Chuluunbaatar
, A. A. Gusev, Sergey I. Vinitsky
, A. G. Abrashkevich:
Erratum to: Program ADZH_v2_0, "KANTBP 2.0: New version of a program for computing energy levels, reaction matrix and radial wave functions in the coupled-channel hyperspherical adiabatic approach" [Computer Physics Communications 179 (2008) 685]. 1012
Volume 180, Number 7, July 2009
- W. Younes:
Gaussian matrix elements in a cylindrical harmonic oscillator basis. 1013-1040 - Nicholas D. M. Hine
, Peter D. Haynes
, Arash A. Mostofi
, Chris-Kriton Skylaris, Mike C. Payne:
Linear-scaling density-functional theory with tens of thousands of atoms: Expanding the scope and scale of calculations with ONETEP. 1041-1053 - Jianying Zhang, Guangwu Yan:
A lattice Boltzmann model for the Korteweg-de Vries equation with two conservation laws. 1054-1062 - Jian Wang:
Multisymplectic numerical method for the Zakharov system. 1063-1071 - T. E. Simos:
P-stability, Trigonometric-fitting and the numerical solution of the radial Schrödinger equation. 1072-1085 - Franck Assous, Felix Tsipis:
Numerical paraxial approximation for highly relativistic beams. 1086-1097 - George Alexandru Nemnes
, Karl-Heinz Hoffmann:
Spin-box algorithm for low temperature dynamics of short range disordered Ising spin systems. 1098-1103 - Zhen Wang:
Discrete tanh method for nonlinear difference-differential equations. 1104-1108 - Elisa Stevanato, Roberto Stroili
:
A case study for the handling of data in a skimming control system. 1109-1115 - Om P. Singh, Rajesh K. Pandey
, Vineet K. Singh
:
An analytic algorithm of Lane-Emden type equations arising in astrophysics using modified Homotopy analysis method. 1116-1124 - Miguel A. García-March
, Miguel Arevalillo-Herráez
, Francisco R. Villatoro
, Fernando Giménez
, Pedro Fernández de Córdoba
:
A generalized finite difference method using Coatmèlec lattices. 1125-1133 - José M. Soler
, Eduardo Anglada:
Optimal Fourier filtering of a function that is strictly confined within a sphere. 1134-1136 - Gui-qiong Xu:
A note on the Painlevé test for nonlinear variable-coefficient PDEs. 1137-1144 - Kensuke Yokoi
:
A variational approach to multi-phase motion of gas, liquid and solid based on the level set method. 1145-1149
- Mark A. Caprio, D. J. Rowe, T. A. Welsh:
Construction of SO(5) SUPERSET OF SO(3) spherical harmonics and Clebsch-Gordan coefficients. 1150-1163 - María Eugenia Castro, Alfonso Niño
, Camelia Muñoz-Caro
:
Gmat. A software tool for the computation of the rovibrational G matrix. 1183-1187 - Kei Moritsugu, Jeremy C. Smith
:
REACH: A program for coarse-grained biomolecular simulation. 1188-1195 - Min Gao, Masaaki Ito:
A Maple package for verifying ultradiscrete soliton solutions. 1196-1205 - Olga Shekhovtsova
, Graziano Venanzoni, Giulia Pancheri:
FASTERD: A Monte Carlo event generator for the study of final state radiation in the process e+e-->pipigamma at DAPhiNE. 1206-1218
- Andrzej Daniluk
:
Multithreaded transactions in scientific computing. The Growth06_v2 program. 1219-1220
Volume 180, Number 8, August 2009
- Tirath Ramdas, Gregory K. Egan, David Abramson
, Kim K. Baldridge:
ERI sorting for emerging processor architectures. 1221-1229 - Markus M. Becker
, Detlef Loffhagen
, W. Schmidt:
A stabilized finite element method for modeling of gas discharges. 1230-1241 - Otmar Ertl, Siegfried Selberherr
:
A fast level set framework for large three-dimensional topography simulations. 1242-1250 - Yongzhi Chen, Yuefan Deng
:
A detailed analysis of communication load balance on BlueGene supercomputer. 1251-1258 - Jee-Gong Chang, Yu-Bin Fang, Shin-Pon Ju
:
Using a generalized molecular dynamics force model for random microstructure generation of different aspect-ratios and orientation for use in the optical design of an LED edge-lit backlight. 1259-1270 - Rok Zitko
:
Adaptive logarithmic discretization for numerical renormalization group methods. 1271-1276 - Xavier Ferrières, G. Klysz, P. Mazet, J. P. Balayssac:
Evaluation of the concrete electromagnetics properties by using radar measurements in a context of building sustainability. 1277-1281 - Nobuyuki Aiba, Shinji Tokuda, M. Furukawa, P. B. Snyder, M. S. Chu:
MINERVA: Ideal MHD stability code for toroidally rotating tokamak plasmas. 1282-1304 - Hongyu Wang, Wei Jiang, You-Nian Wang:
Parallelization and optimization of electrostatic Particle-in-Cell/Monte-Carlo Coupled codes as applied to RF discharges. 1305-1314 - Dhiranjan Roy:
Global approximation for some functions. 1315-1337 - Stephan Dürr:
Logarithmic link smearing for full QCD. 1338-1357
- Ochbadrakh Chuluunbaatar
, A. A. Gusev, Sergey I. Vinitsky
, A. G. Abrashkevich:
ODPEVP: A program for computing eigenvalues and eigenfunctions and their first derivatives with respect to the parameter of the parametric self-adjoined Sturm-Liouville problem. 1358-1375 - Rajan K. Chakrabarty, Mark A. Garro, Shammah Chancellor, Christopher Herald, Hans Moosmüller
:
FracMAP: A user-interactive package for performing simulation and orientation-specific morphology analysis of fractal-like solid nano-agglomerates. 1376-1381 - Chuanfu Luo, Jens-Uwe Sommer:
Coding coarse grained polymer model for LAMMPS and its application to polymer crystallization. 1382-1391 - Andrea Marini
, Conor Hogan
, Myrta Grüning
, Daniele Varsano
:
yambo: An ab initio tool for excited state calculations. 1392-1403 - Constantinos Voglis, Panagiotis E. Hadjidoukas
, Isaac E. Lagaris, Dimitris G. Papageorgiou
:
A numerical differentiation library exploiting parallel architectures. 1404-1415 - Layla Martin-Samos
, Giovanni Bussi
:
SaX: An open source package for electronic-structure and optical-properties calculations in the GW approximation. 1416-1425
- Thomas Hahn, Sven Heinemeyer
, Wolfgang Hollik, Heidi Rzehak
, Georg Weiglein:
FeynHiggs: A program for the calculation of MSSM Higgs-boson observables - Version 2.6.5. 1426-1427
Volume 180, Number 9, September 2009
- Songxin Liang, David J. Jeffrey:
New travelling wave solutions to modified CH and DP equations. 1429-1433 - Carlos E. Fiore
, Mário J. de Oliveira
:
Extending the use of canonical and microcanonical Monte Carlo algorithms to spin models. 1434-1441 - Luca Argenti
, Renato Colle:
On the B-splines effective completeness. 1442-1447 - Tatiana V. Levitina, Erkki J. Brändas:
Filter diagonalization: Filtering and postprocessing with prolates. 1448-1457 - Mehdi Dehghan
, Davoud Mirzaei
:
Meshless local boundary integral equation (LBIE) method for the unsteady magnetohydrodynamic (MHD) flow in rectangular and circular pipes. 1458-1466 - Ben Dudson, M. V. Umansky, X. Q. Xu, P. B. Snyder, H. R. Wilson:
BOUT++: A framework for parallel plasma fluid simulations. 1467-1480 - Huanmin Yao:
Solution of the Duffing equation involving both integral and non-integral forcing terms. 1481-1488 - Kunio Ishida, Keiichiro Nasu:
Numerical simulation on the dynamics of photoinduced cooperative phenomena in molecular crystals. 1489-1494 - Massimo Bernaschi, Simone Melchionna, Sauro Succi
, Maria Fyta
, Efthimios Kaxiras, Joy K. Sircar:
MUPHY: A parallel MUlti PHYsics/scale code for high performance bio-fluidic simulations. 1495-1502 - James E. Magee, Helen Dutton, Flor R. Siperstein
:
CaSPA - an algorithm for calculation of the size of percolating aggregates. 1503-1510 - Hua Yang, Yuchao Nie, Hongbin Zhang, Zengru Di, Ying Fan:
Insight to the express transport network. 1511-1515 - Alper Korkmaz
, Idris Dag:
Solitary wave simulations of Complex Modified Korteweg-de Vries Equation using differential quadrature method. 1516-1523 - Wilfred Anthony Cooper, Steven P. Hirshman, Peter Merkel, Jonathan P. Graves, Johann Kisslinger, Horst F. G. Wobig, Yoshiro Narushima, Shoichi Okamura, Kiyomasa Y. Watanabe:
Three-dimensional anisotropic pressure free boundary equilibria. 1524-1533 - Nobuaki Ohno, Akira Kageyama
:
Visualization of spherical data by Yin-Yang grid. 1534-1538 - Mohammad Mehdi Rashidi
, Esmaeel Erfani:
New analytical method for solving Burgers' and nonlinear heat transfer equations and comparison with HAM. 1539-1544 - Xinyuan Wu, Xiong You, Jiyong Li:
Note on derivation of order conditions for ARKN methods for perturbed oscillators. 1545-1549 - Manabu Yagi, Kanako Seki
, Yosuke Matsumoto:
Development of a magnetohydrodynamic simulation code satisfying the solenoidal magnetic field condition. 1550-1557 - Michael Weyrauch, Daniel Scholz:
Computing the Baker-Campbell-Hausdorff series and the Zassenhaus product. 1558-1565 - Qingjie Zhao, Baojun Zhang, Huosheng Hu
:
Novel two-step filtering scheme for a logging-while-drilling system. 1566-1571
- Gonzalo Alvarez:
The density matrix renormalization group for strongly correlated electron systems: A generic implementation. 1572-1578 - Farvah Mahmoudi:
SuperIso v2.3: A program for calculating flavor physics observables in supersymmetry. 1579-1613 - Neil D. Christensen, Claude Duhr
:
FeynRules - Feynman rules made easy. 1614-1641 - Boris Tomásik
:
DRAGON: Monte Carlo generator of particle production from a fragmented fireball in ultrarelativistic nuclear collisions. 1642-1653 - Rafael López, Jaime Fernández Rico, Guillermo Ramírez
, Ignacio Ema, David Zorrilla
:
DAMQT: A package for the analysis of electron density in molecules. 1654-1660 - Ken Arnold, Manuel Bähr, Giuseppe Bozzi
, Francisco Campanario
, Christoph Englert
, Terrance Figy
, Nicolas Greiner, Christoph Hackstein, Vera Hankele, Barbara Jäger, Gunnar Klämke, Michael Kubocz, Carlo Oleari
, Simon Plätzer, Stefan Prestel, Malgorzata Worek
, Dieter Zeppenfeld:
Vbfnlo: A parton level Monte Carlo for processes with electroweak bosons. 1661-1670 - Karol Kolodziej:
carlomat: A program for automatic computation of lowest order cross sections. 1671-1680 - Thomas Hahn:
SUSY Les Houches Accord 2 I/O made easy. 1681-1693 - Elsayed K. Elmaghraby
:
PHASE-OTI: A pre-equilibrium model code for nuclear reactions calculations. 1694-1699 - S. A. Chin, S. Janecek, E. Krotscheck:
An arbitrary order diffusion algorithm for solving Schrödinger equations. 1700-1708
- Daniele Binosi
, John C. Collins
, C. Kaufhold, L. Theußl:
JaxoDraw: A graphical user interface for drawing Feynman diagrams. Version 2.0 release notes. 1709-1715 - Sam J. Cipolla:
ISICS2008: An expanded version of ISICS for calculating K-, L-, and M-shell cross sections from PWBA and ECPSSR theory. 1716-1717 - Farvah Mahmoudi:
SuperIso v3.0, flavor physics observables calculations: extension to NMSSM. 1718-1719
Volume 180, Number 10, October 2009
- Kartika Chandra Sahoo, Yiming Li, Edward Yi Chang:
Numerical calculation of the reflectance of sub-wavelength structures on silicon nitride for solar cell application. 1721-1729 - Nicolas Crouseilles, Thomas Respaud, Eric Sonnendrücker:
A forward semi-Lagrangian method for the numerical solution of the Vlasov equation. 1730-1745 - Özgür Ergül, Levent Gürel:
Discretization error due to the identity operator in surface integral equations. 1746-1752 - W. F. Perger, Jackson Criswell
, Bartolomeo Civalleri
, Roberto Dovesi:
Ab-initio calculation of elastic constants of crystalline systems with the CRYSTAL code. 1753-1759 - Gustaaf B. Jacobs, Jan S. Hesthaven:
Implicit-explicit time integration of a high-order particle-in-cell method with hyperbolic divergence cleaning. 1760-1767 - D. G. Pretty, B. D. Blackwell
:
A data mining algorithm for automated characterisation of fluctuations in multichannel timeseries. 1768-1776 - Hongli Yang, Xinyuan Wu, Xiong You, Yonglei Fang:
Extended RKN-type methods for numerical integration of perturbed oscillators. 1777-1794 - Xiaojun Tong, Zhu Wang, Haining Yu:
A research using hybrid RBF/Elman neural networks for intrusion detection system secure model. 1795-1801 - J. Martín-Vaquero
, B. Janssen:
Second-order stabilized explicit Runge-Kutta methods for stiff problems. 1802-1810 - Joe J. Monaghan, Jules B. Kajtar
:
SPH particle boundary forces for arbitrary boundaries. 1811-1820 - Jiaxiang Cai:
Multisymplectic numerical method for the regularized long-wave equation. 1821-1831 - Enza De Lauro
, Salvatore De Martino, Mariarosaria Falanga
, Liviu Gr. Ixaru:
Limit cycles in nonlinear excitation of clusters of classical oscillators. 1832-1838 - D. F. Papadopoulos, Zacharias A. Anastassi
, T. E. Simos:
A phase-fitted Runge-Kutta-Nyström method for the numerical solution of initial value problems with oscillating solutions. 1839-1846 - M. Williams:
Numerical object oriented quantum field theory calculations. 1847-1852 - Ting-Zhu Huang
, Li-Tao Zhang, Tongxiang Gu, Xianyu Zuo:
New block triangular preconditioner for linear systems arising from the discretized time-harmonic Maxwell equations. 1853-1859 - D. Laveder, D. Borgogno, T. Passot, P. L. Sulem:
On a semi-implicit scheme for spectral simulations of dispersive magnetohydrodynamics. 1860-1869 - Noriyuki Tanabe, Yasuyuki Ichihashi, Hirotaka Nakayama, Nobuyuki Masuda, Tomoyoshi Ito:
Speed-up of hologram generation using ClearSpeed Accelerator board. 1870-1873 - Alexandre M. Tartakovsky, Kim F. Ferris, Paul Meakin
:
Lagrangian particle model for multiphase flows. 1874-1881
- B. J. Jackin, P. K. Palanisamy:
A completely open source based computing system for computer generation of Fourier holograms. 1882-1887 - Paulsamy Muruganandam
, Sadhan K. Adhikari
:
Fortran programs for the time-dependent Gross-Pitaevskii equation in a fully anisotropic trap. 1888-1912 - Miroslav Morhác, Vladislav Matousek:
Library of sophisticated functions for analysis of nuclear spectra. 1913-1940 - Alessandro Cafarella, Costas G. Papadopoulos, Malgorzata Worek
:
Helac-Phegas: A generator for all parton level processes. 1941-1955 - Pablo Domínguez-García
, Miguel A. Rubio
:
JChainsAnalyser: an ImageJ-based stand-alone application for the study of magneto-rheological fluids. 1956-1960 - Massimiliano Bonomi
, Davide Branduardi, Giovanni Bussi
, Carlo Camilloni
, Davide Provasi, Paolo Raiteri
, Davide Donadio
, Fabrizio Marinelli
, Fabio Pietrucci
, Ricardo A. Broglia, Michele Parrinello:
PLUMED: A portable plugin for free-energy calculations with molecular dynamics. 1961-1972 - William J. Brouwer, Michael C. Davis
, Karl T. Mueller:
Optimized multiple quantum MAS lineshape simulations in solid state NMR. 1973-1982 - Paul Martinsen, Johannes P. Blaschke
, Rainer Künnemeyer
, Robert Jordan:
Accelerating Monte Carlo simulations with an NVIDIA® graphics processor. 1983-1989 - Panagiotis Vlachos, Ioannis Karafyllidis
:
Quantum game simulator, using the circuit model of quantum computation. 1990-1998 - Ioan Valeriu Grossu, Calin Besliu, M. V. Rusu, Alexandru Jipa, Cristian C. Bordeianu, D. Felea
:
Visual tool for estimating the fractal dimension of images. 1999-2001 - Sergei Manzhos
, Koichi Yamashita, Tucker Carrington Jr.:
Fitting sparse multidimensional data with low-dimensional terms. 2002-2012 - Evgeni S. Penev
, Sotiria Lampoudi, Joan-Emma Shea:
TiReX: Replica-exchange molecular dynamics using Tinker. 2013-2019
- Hoang-Binh Dy:
A program to compute exact hydrogenic radial integrals and Einstein coefficients. 2020 - Stephan Fritzsche:
Maple procedures for the coupling of angular momenta. An up-date of the Racah module. 2021-2023
- T. D. Pointon:
Erratum to "Second-order, exact charge conservation for electromagnetic particle-in-cell simulation in complex geometry" [Computer Physics Communications 179 (2008) 535-544]. 2024
Volume 180, Number 11, November 2009
- Jaime Suárez
, Stavros C. Farantos, Stamatis Stamatiadis
, Lucas Lathouwers:
A method for solving the molecular Schrödinger equation in Cartesian coordinates via angular momentum projection operators. 2025-2033 - Songxin Liang, David J. Jeffrey:
An efficient analytical approach for solving fourth order boundary value problems. 2034-2040 - Oleg Zatsarinny, Charlotte Froese Fischer:
Atomic structure calculations using MCHF and BSR. 2041-2065 - Rio Yokota
, Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Shinnosuke Obi, Kenji Yasuoka:
Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence. 2066-2078 - Dong Xu, Jernej Stare, Andrew L. Cooksy
:
Solving the vibrational Schrödinger equation on an arbitrary multidimensional potential energy surface by the finite element method. 2079-2094 - Lukas Osterloh, Carlos Pérez
, David Böhme
, José María Baldasano, Christine Böckmann
, Lars Schneidenbach, David Vicente:
Parallel software for retrieval of aerosol distribution from LIDAR data in the framework of EARLINET-ASOS. 2095-2102 - Jacinto Javier Ibáñez
, Vicente Hernández:
Solving Differential Matrix Riccati Equations by a piecewise-linearized method based on the conmutant equation. 2103-2114 - S. Srinivas, R. Gayathri, M. Kothandapani:
The influence of slip conditions, wall properties and heat transfer on MHD peristaltic transport. 2115-2122 - Yin-Long Zhao, Yin-Ping Liu, Zhi-Bin Li:
A modified WTC algorithm for the Painlevé test of nonlinear variable-coefficient PDEs. 2123-2128 - German Urbina-Villalba
, Aileen Lozsán, Kareem Rahn, Manuel S. Romero-Cano
:
Calculation of the stability ratio of suspensions using Emulsion Stability Simulations. 2129-2139 - Anthony J. C. Ladd:
A fast random number generator for stochastic simulations. 2140-2142 - Johannes Blümlein, Manuel Kauers, Sebastian Klein, Carsten Schneider
:
Determining the closed forms of the O(sS3) anomalous dimensions and Wilson coefficients from Mellin moments by means of computer algebra. 2143-2165 - Edoardo Milotti
, Alessio Del Fabbro, Roberto Chignola
:
Numerical integration methods for large-scale biophysical simulations. 2166-2174 - Volker Blum
, Ralf Gehrke, Felix Hanke, Paula Havu, Ville Havu, Xinguo Ren, Karsten Reuter
, Matthias Scheffler:
Ab initio molecular simulations with numeric atom-centered orbitals. 2175-2196 - Allen Caldwell, Daniel Kollár, Kevin Kröninger
:
BAT - The Bayesian analysis toolkit. 2197-2209 - Mohammad Mehdi Rashidi
:
The modified differential transform method for solving MHD boundary-layer equations. 2210-2217 - Johannes Blümlein:
Structural relations of harmonic sums and Mellin transforms up to weight w=5. 2218-2249 - Xinyuan Wu, Xiong You, Jianlin Xia:
Order conditions for ARKN methods solving oscillatory systems. 2250-2257 - Dao Thi Nhung
, Le Duc Ninh
:
D0C: A code to calculate scalar one-loop four-point integrals with complex masses. 2258-2267 - Zi-Cai Li, Cheng-Sheng Chien, H.-T. Huang, Bor-Wen Jeng:
Superconvergence of bi-k-Lagrange elements for eigenvalue problems. 2268-2282 - Tobias F. Illenseer, Wolfgang J. Duschl:
Two-dimensional central-upwind schemes for curvilinear grids and application to gas dynamics with angular momentum. 2283-2302
- Jakub T. Moscicki, Frederic Brochu, Johannes Ebke
, Ulrik Egede
, Johannes Elmsheuser, Karl Harrison, R. W. L. Jones, Hurng-Chun Lee, Dietrich Liko, Andrew Maier, Adrian Muraru, Glen N. Patrick, Katarina Pajchel, Will Reece, Bjoern H. Samset
, Mark W. Slater, Alexander Soroko, C. L. Tan, Daniel C. van der Ster, Michael Williams:
Ganga: A tool for computational-task management and easy access to Grid resources. 2303-2316 - Thomas Binoth, Jean-Philippe Guillet
, Gudrun Heinrich, Eric Pilon, Thomas Reiter:
golem95: A numerical program to calculate one-loop tensor integrals with up to six external legs. 2317-2330 - Jingfang Huang, Jun Jia, Bo Zhang:
FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions. 2331-2338 - Alexei Bazavov, Bernd A. Berg:
Program package for multicanonical simulations of U(1) lattice gauge theory. 2339-2347 - Ovidio Peña-Rodríguez
, U. Pal
:
Scattering of electromagnetic radiation by a multilayered sphere. 2348-2354 - Thomas Müller
, Frank Grave:
Motion4D - A library for lightrays and timelike worldlines in the theory of relativity. 2355-2360 - Jacek Dobaczewski
, Wojciech Satula
, B. Gillis Carlsson, Jonathan Engel, P. Olbratowski, P. Powalowski, M. Sadziak, Jason Sarich, Nicolas Schunck
, Andrzej Staszczak
, M. V. Stoitsov, M. Zalewski, H. Zdunczuk:
Solution of the Skyrme-Hartree-Fock-Bogolyubov equations in the Cartesian deformed harmonic-oscillator basis.: (VI) hfodd (v2.40h): A new version of the program. 2361-2391
- S. Nath:
TERS v2.0: An improved version of TERS. 2392-2393 - Andrzej Daniluk
:
Model-Driven Development for scientific computing. An upgrade of the RHEEDGr program. 2394-2397 - Cristian C. Bordeianu, D. Felea
, Calin Besliu, Alexandru Jipa, Ioan Valeriu Grossu:
A new version of Scilab software package for the study of dynamical systems. 2398-2399
Volume 180, Number 12, December 2009
- N. Stanley Scott:
Foreword. - Phil G. Burke, Val Burke:
Establishment of CPC and the Program Library. - Xiaoxu Guan, Clifford J. Noble, Oleg Zatsarinny, Klaus Bartschat, Barry I. Schneider
:
ALTDSE: An Arnoldi-Lanczos program to solve the time-dependent Schrödinger equation. 2401-2409 - M. Plummer, E. A. G. Armour, A. C. Todd, C. P. Franklin, J. N. Cooper:
'tripleint_cc': A program for 2-centre variational leptonic Coulomb potential matrix elements using Hylleraas-type trial functions, with a performance optimization study. 2410-2423 - N. Stanley Scott, M. Penny Scott, Phil G. Burke, Timothy Stitt, V. Faro-Maza, Christophe Denis, A. Maniopoulou:
2DRMP: A suite of two-dimensional R-matrix propagation codes. 2424-2449 - V. M. Burke, Clifford J. Noble, V. Faro-Maza, A. Maniopoulou, N. Stanley Scott:
FARM_2DRMP: A version of FARM for use with 2DRMP. 2450-2451 - Joe Pitt-Francis
, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas
, Jonathan Cooper
, Alexander G. Fletcher
, Gary R. Mirams
, Philip J. Murray
, James M. Osborne
, Alex Walter, S. Jonathan Chapman
, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters
, Jonathan P. Whiteley, Helen M. Byrne
, David Gavaghan
:
Chaste: A test-driven approach to software development for biological modelling. 2452-2471 - Iosif Legrand, Harvey B. Newman, Ramiro Voicu, Catalin Cirstoiu, Costin Grigoras, Ciprian Dobre
, Adrian Muraru, Alexandru Costan
, M. Dediu, Corina Stratan:
MonALISA: An agent based, dynamic service system to monitor, control and optimize distributed systems. 2472-2498 - Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal
, Diego Casadei
, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta:
ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization. 2499-2512 - Stefan J. Zasada, Peter V. Coveney:
Virtualizing access to scientific applications with the Application Hosting Environment. 2513-2525 - Marc Baboulin, Alfredo Buttari
, Jack J. Dongarra, Jakub Kurzak, Julie Langou, Julien Langou, Piotr Luszczek, Stanimire Tomov
:
Accelerating scientific computations with mixed precision algorithms. 2526-2533 - Danny van Dyk, Markus Geveler, Sven Mallach, Dirk Ribbrock, Dominik Göddeke
, Carsten Gutwenger:
HONEI: A collection of libraries for numerical computations targeting multiple processor architectures. 2534-2543 - Nico Sanna
, Isabella Baccarelli
, G. Morelli:
SCELib3.0: The new revision of SCELib, the parallel computational library of molecular properties in the Single Center Approach. 2544-2549 - Nico Sanna
, Isabella Baccarelli
, G. Morelli:
The VOLSCAT package for electron and positron scattering of molecular targets: A new high throughput approach to cross-section and resonances computation. 2550-2562 - Akila Gothandaraman, Gregory D. Peterson, G. Lee Warren, Robert J. Hinde, Robert J. Harrison:
A Hardware-Accelerated Quantum Monte Carlo framework (HAQMC) for N-body systems. 2563-2573 - JunKyu Lee, Yu Bi, Gregory D. Peterson, Robert J. Hinde, Robert J. Harrison:
HASPRNG: Hardware Accelerated Scalable Parallel Random Number Generators. 2574-2581 - Xavier Gonze, Bernard Amadon, Pierre-Matthieu Anglade, Jean-Michel Beuken, François Bottin, Paul Boulanger
, Fabien Bruneval
, Damien Caliste
, Razvan Caracas
, Michel Côté
, Thierry Deutsch
, Luigi Genovese
, Philippe Ghosez
, Matteo Giantomassi, Stefan Goedecker, Don R. Hamann, Patrick Hermet, François Jollet, Gerald Jomard, Stéphane Le Roux, Marco Mancini, Stephane Mazevet, Micael J. T. Oliveira
, Giovanni Onida
, Yann Pouillon
, Tonatiuh Rangel
, Gian-Marco Rignanese
, Davide Sangalli
, Riad Shaltaf
, Marc Torrent
, Matthieu J. Verstraete
, Gilles Zérah, Joe W. Zwanziger
:
ABINIT: First-principles approach to material and nanosystem properties. 2582-2615 - S. D. Kenny, Andrew P. Horsfield:
Plato: A localised orbital based density functional theory code. 2616-2621 - Dario Alfè
:
PHON: A program to calculate phonons using the small displacement method. 2622-2633 - Yeaw Chu Lee
, H. M. Thompson, P. H. Gaskell:
FILMPAR: A parallel algorithm designed for the efficient and accurate computation of thin film flow on functional surfaces containing micro-structure. 2634-2649 - A. G. Peeters, Yann Camenen
, F. J. Casson, W. A. Hornsby, A. P. Snodin, D. Strintzi, G. Szepesi:
The nonlinear gyro-kinetic flux tube code GKW. 2650-2672 - Manhui Wang
, Andrew J. May, Peter J. Knowles
:
Parallel programming interface for distributed data. 2673-2679 - Mirco Zerbetto, Antonino Polimeno, Vincenzo Barone:
Simulation of electron spin resonance spectroscopy in diverse environments: An integrated approach. 2680-2697 - Alistair Hart, Georg M. von Hippel
, R. R. Horgan, E. H. Müller:
Automated generation of lattice QCD Feynman rules. 2698-2716 - Karl Jansen, Carsten Urbach
:
tmLQCD: A program suite to simulate Wilson twisted mass lattice QCD. 2717-2738 - Peter A. Boyle:
The BAGEL assembler generation library. 2739-2748

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