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ORCIDInternational Journal of High Performance Computing Applications, Volume 34
Volume 34, Number 1, January 2020
- José M. Cecilia:
Guest editors' note: Special issue on novel high-performance computing algorithms and platforms in bioinformatics.
- Javier Prades
, Baldomero Imbernón, Carlos Reaño, Jorge Peña-García, José Pedro Cerón-Carrasco, Federico Silla, Horacio Pérez Sánchez:
Maximizing resource usage in multifold molecular dynamics with rCUDA. - Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín:
Fast search of third-order epistatic interactions on CPU and GPU clusters. - Baldomero Imbernón, Antonio Llanes, José-Matías Cutillas-Lozano, Domingo Giménez:
HYPERDOCK: Improving virtual screening through parallel hyperheuristics. - Marta Garcia-Gasulla, Filippo Mantovani, Marc Josep-Fabrego, Beatriz Eguzkitza, Guillaume Houzeaux:
Runtime mechanisms to survive new HPC architectures: A use case in human respiratory simulations. - César González, Mariano Pérez, Juan M. Orduña, Javier Chaves, Ana-Bárbara García:
HPG-HMapper: A DNA hydroxymethylation analysis tool.
- Akrem Benatia, Weixing Ji, Yizhuo Wang, Feng Shi:
Sparse matrix partitioning for optimizing SpMV on CPU-GPU heterogeneous platforms. - José Miguel Mantas, Francesco Vecil:
Hybrid OpenMP-CUDA parallel implementation of a deterministic solver for ultrashort DG-MOSFETs. - Pawel Russek, Ernest Jamro, Agnieszka Dabrowska-Boruch, Kazimierz Wiatr:
A study of the loops control for reconfigurable computing with OpenCL in the LABS local search problem. - Daobi Chen, Liang Yuan, Yunquan Zhang, Jingfu Yan, David K. Kahaner:
HPC software capability landscape in China.
Volume 34, Number 2, March 2020
- Jue Wang, Xinfu He:
Special issue on advanced simulation in engineering. - Xinming Qin, Honghui Shang, Lei Xu, Wei Hu, Jinlong Yang, Shigang Li, Yunquan Zhang:
The static parallel distribution algorithms for hybrid density-functional calculations in HONPAS package. - Xiaodong Hu, Zhonghua Lu, Jian Zhang, Xiazhen Liu, Wu Yuan, Shan Liang, Haikuo Zhang:
A parallel algorithm for chimera grid with implicit hole cutting method. - Xianmeng Wang, Zhifeng Zhou, Changjun Hu, Wen Yang, Minfu Zhao, Zhaoshun Wang, Peng Shi:
Accelerating and tuning small matrix multiplications on Sunway TaihuLight: A case study of spectral element CFD Code Nek5000.
- Gary Lawson, Masha Sosonkina, Tal Ezer, Yuzhong Shen:
Applying EMD/HHT analysis to power traces of applications executed on systems with Intel Xeon Phi. - Mario Hernández, Juan M. Cebrian, José M. Cecilia, José M. García:
Offloading strategies for Stencil kernels on the KNC Xeon Phi architecture: Accuracy versus performance. - Atsushi Hori, Kazumi Yoshinaga, Thomas Hérault, Aurelien Bouteiller, George Bosilca, Yutaka Ishikawa:
Overhead of using spare nodes. - Jean Luca Bez, Andre Ramos Carneiro, Pablo José Pavan, Valéria Soldera Girelli, Francieli Zanon Boito, Bruno Alves Fagundes, Carla Osthoff, Pedro Leite da Silva Dias, Jean-François Méhaut, Philippe O. A. Navaux:
I/O performance of the Santos Dumont supercomputer. - Louis-Claude Canon, Aurélie Kong Win Chang, Yves Robert, Frédéric Vivien:
Scheduling independent stochastic tasks under deadline and budget constraints.
Volume 34, Number 3, May 2020
- Roberto Porcù, Edie Miglio, Nicola Parolini, Mattia Penati, Noemi Vergopolan:
HPC simulations of brownout: A noninteracting particles dynamic model. - Byron E. Moutafis, George A. Gravvanis, Christos K. Filelis-Papadopoulos:
Hybrid multi-projection method using sparse approximate inverses on GPU clusters. - Tieqiang Mo, Renfa Li:
Iteratively solving sparse linear system based on PaRSEC task scheduling. - David Zwick, S. Balachandar:
A scalable Euler-Lagrange approach for multiphase flow simulation on spectral elements. - Sébastien Cayrols, Iain S. Duff, Florent Lopez:
Parallelization of the solve phase in a task-based Cholesky solver using a sequential task flow model. - J. C. S. Kadupitiya, Geoffrey C. Fox, Vikram Jadhao:
Machine learning for parameter auto-tuning in molecular dynamics simulations: Efficient dynamics of ions near polarizable nanoparticles.
Volume 34, Number 4, July 2020
- Kadir Akbudak, Hatem Ltaief, Étienne Vincent, Rached Abdelkhalak, Thierry Tonellot, David E. Keyes:
Asynchronous computations for solving the acoustic wave propagation equation. - Yang Liu, Wissam M. Sid-Lakhdar, Elizaveta Rebrova, Pieter Ghysels, Xiaoye Sherry Li:
A parallel hierarchical blocked adaptive cross approximation algorithm. - Tom Peterka, Deborah Bard, Janine C. Bennett, E. Wes Bethel, Ron A. Oldfield, Line Pouchard, Christine Sweeney, Matthew Wolf:
Priority research directions for in situ data management: Enabling scientific discovery from diverse data sources. - Francesco Cremonesi, Georg Hager, Gerhard Wellein, Felix Schürmann:
Analytic performance modeling and analysis of detailed neuron simulations. - Kevin Verma, Christopher McCabe, Chong Peng, Robert Wille:
A PCISPH implementation using distributed multi-GPU acceleration for simulating industrial engineering applications.
- A. Grannan, Kanika Sood, Boyana Norris, Anshu Dubey:
Understanding the landscape of scientific software used on high-performance computing platforms.
Volume 34, Number 5, September 2020
- Walid Keyrouz, Michael Mascagni:
CRE2019 Special Issue Introduction IJHPCA.
- David H. Bailey:
Reproducibility and variable precision computing. - Gregory Kiar, Pablo de Oliveira Castro, Pierre Rioux, Eric Petit, Shawn T. Brown, Alan C. Evans, Tristan Glatard:
Comparing perturbation models for evaluating stability of neuroimaging pipelines. - Roman Iakymchuk, María Barreda Vayá, Stef Graillat, José Ignacio Aliaga, Enrique S. Quintana-Ortí:
Reproducibility of parallel preconditioned conjugate gradient in hybrid programming environments. - Brett Neuman, Andy Dubois, Laura Monroe, Robert W. Robey:
Fast, good, and repeatable: Summations, vectorization, and reproducibility.
- Srdan Nikolic, Nenad Stevanovic, Milos R. Ivanovic:
Optimizing parallel particle tracking in Brownian motion using machine learning. - Amanda Bienz, William D. Gropp, Luke N. Olson:
Reducing communication in algebraic multigrid with multi-step node aware communication. - Paul F. Fischer, Misun Min, Thilina Rathnayake, Som Dutta, Tzanio V. Kolev, Veselin Dobrev, Jean-Sylvain Camier, Martin Kronbichler, Timothy C. Warburton, Kasia Swirydowicz, Jed Brown:
Scalability of high-performance PDE solvers.
Volume 34, Number 6, November 2020
- James D. Stevens, Andreas Klöckner:
A mechanism for balancing accuracy and scope in cross-machine black-box GPU performance modeling. - Masaki Iwasawa, Daisuke Namekata, Ryo Sakamoto, Takashi Nakamura, Yasuyuki Kimura, Keigo Nitadori, Long Wang, Miyuki Tsubouchi, Jun Makino, Zhao Liu, Haohuan Fu, Guangwen Yang:
Implementation and performance of Barnes-hut n-body algorithm on extreme-scale heterogeneous many-core architectures. - Tianjiao Sun, Lawrence Mitchell, Kaushik Kulkarni, Andreas Klöckner, David A. Ham, Paul H. J. Kelly:
A study of vectorization for matrix-free finite element methods. - Mohammed A. Al Farhan, Ahmad Abdelfattah, Stanimire Tomov, Mark Gates, Dalal Sukkari, Azzam Haidar, Robert Rosenberg, Jack J. Dongarra:
MAGMA templates for scalable linear algebra on emerging architectures. - Cristian Ramon-Cortes, Ramon Amela, Jorge Ejarque, Philippe Clauss, Rosa M. Badia:
AutoParallel: Automatic parallelisation and distributed execution of affine loop nests in Python.
- Hank Childs, Sean Ahern, James P. Ahrens, Andrew C. Bauer, Janine Bennett, E. Wes Bethel, Peer-Timo Bremer, Eric Brugger, Joseph Cottam, Matthieu Dorier, Soumya Dutta, Jean M. Favre, Thomas Fogal, Steffen Frey, Christoph Garth, Berk Geveci, William F. Godoy, Charles D. Hansen, Cyrus Harrison, Bernd Hentschel, Joseph A. Insley, Christopher R. Johnson, Scott Klasky, Aaron Knoll, James Kress, Matthew Larsen, Jay F. Lofstead, Kwan-Liu Ma, Preeti Malakar, Jeremy S. Meredith, Kenneth Moreland, Paul A. Navrátil, Patrick O'Leary, Manish Parashar, Valerio Pascucci, John Patchett, Tom Peterka, Steve Petruzza, Norbert Podhorszki, David Pugmire, Michel E. Rasquin, Silvio Rizzi, David H. Rogers, Sudhanshu Sane, Franz Sauer, Robert Sisneros, Han-Wei Shen, Will Usher, Rhonda Vickery, Venkatram Vishwanath, Ingo Wald, Ruonan Wang, Gunther H. Weber, Brad Whitlock, Matthew Wolf, Hongfeng Yu, Sean B. Ziegeler:
A terminology for in situ visualization and analysis systems.
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