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Journal of Integrative Bioinformatics, Volume 8
Volume 8, Number 1, 2011
- Sabrina Pross
, Bernhard Bachmann
:
An Advanced Environment for Hybrid Modeling of Biological Systems Based on Modelica. - Andreas Pürzer, Felix Grassmann
, Dietmar Birzer, Rainer Merkl
:
Key2Ann: a tool to process sequence sets by replacing database identifiers with a human-readable annotation. - Jeffrey Q. Jiang, Andreas W. M. Dress, Ming Chen:
Retraction: Towards Prediction and Prioritization of disease genes by the modularity of human phenome-genome assembled network. - Mohammad Tabrez Anwar Shamim, Hampapathalu A. Nagarajaram:
A Hierarchical Approach to Protein Fold Prediction. - Gürkan Üstünkar, Yesim Aydin Son
:
METU-SNP: An Integrated Software System for SNP-Complex Disease Association Analysis.
Volume 8, Number 2, 2011
- Malik Alawi, Stefan Kurtz, Michael Beckstette:
CASSys: an integrated software-system for the interactive analysis of ChIP-seq data. - Victor Lesk, Jan Taubert, Christopher J. Rawlings
, Stuart J. Dunbar, Stephen H. Muggleton:
WIBL: Workbench for Integrative Biological Learning. - Christian Hildebrandt, Sebastian Wolf, Steffen Neumann:
Database supported candidate search for Metabolite identification. - Christian Loyek, Alexander Bunkowski, Wolfgang Vautz, Tim W. Nattkemper
:
Web2.0 paves new ways for collaborative and exploratory analysis of chemical compounds in spectrometry data. - Can Türker, Fuat Akal, Ralph Schlapbach:
Life Sciences Data and Application Integration with B-Fabric. - Ke Lin, Harrie Kools, Philip J. de Groot, Anand K. Gavai
, Ram K. Basnet, Feng Cheng, Jian Wu, Xiaowu Wang, Arjen Lommen, Guido J. E. K. Hooiveld
, Guusje Bonnema, Richard G. F. Visser, Michael R. Müller
, Jack A. M. Leunissen:
MADMAX - Management and analysis database for multiple ~omics experiments. - Jung Soh, Mei Xiao, Thao Do, Oscar Meruvia Pastor, Christoph W. Sensen
:
Integrative Visualization of Temporally Varying Medical Image Patterns. - Hendrik Mehlhorn
, Falk Schreiber:
DBE2 - Management of experimental data for the VANTED system. - Pawel Sztromwasser, Pål Puntervoll, Kjell Petersen:
Data partitioning enables the use of standard SOAP Web Services in genome-scale workflows. - Vesna Pajic:
Putting Encyclopaedia Knowledge into Structural Form: Finite State Transducers Approach. - Kamal Taha, Ramez Elmasri:
GMB: An Efficient Query Processor for Biological Data. - Marco Masseroli, Giorgio Ghisalberti, Stefano Ceri:
Bio-Search Computing: Integration and global ranking of bioinformatics search results. - Laura M. F. Bertens
, Joris Slob, Fons J. Verbeek:
A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology. - Bernd W. Brandt
, Jaap Heringa:
Protein analysis tools and services at IBIVU. - Yanju Zhang, Elia Stupka
, Christiaan V. Henkel
, Hans J. Jansen, Herman P. Spaink
, Fons J. Verbeek:
Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data. - BalaKrishna Kolluru, Sirintra Nakjang, Robert P. Hirt
, Anil Wipat
, Sophia Ananiadou:
Automatic extraction of microorganisms and their habitats from free text using text mining workflows. - Neil Swainston, Kieran Smallbone
, Pedro Mendes
, Douglas B. Kell
, Norman W. Paton:
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. - Erik van den Akker
, Bas Verbruggen, Bas T. Heijmans, Marian Beekman
, Joost N. Kok, Pieternella E. Slagboom
, Marcel J. T. Reinders:
Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis.
Volume 8, Number 3, 2011
- Lionel Morgado, Carlos Pereira, Paula Veríssimo
, António Dourado:
Modelling Proteolytic Enzymes With Support Vector Machines. - Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña
, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José Luis Capelo-Martínez, Florentino Fdez-Riverola
:
Rapid development of proteomic applications with the AIBench framework. - Carlos A. C. Bastos, Vera Afreixo
, Armando J. Pinho, Sara P. Garcia
, João M. O. S. Rodrigues
, Paulo Jorge S. G. Ferreira:
Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions. - Saleh Enbiya, Fatima Mahieddine, M. Alamgir Hossain:
Model Reference Adaptive Scheme for Multi-drug Infusion for Blood Pressure Control. - Fernando José Mateus da Silva
, Juan Manuel Sánchez-Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez:
Parallel Niche Pareto AlineaGA - an Evolutionary Multiobjective approach on Multiple Sequence Alignment. - André Valério Carreiro
, Orlando Anunciação, João André Carriço, Sara Cordeiro Madeira:
Prognostic Prediction through Biclustering-Based Classification of Clinical Gene Expression Time Series. - Lourdes Borrajo, Rubén Romero, Eva Lorenzo Iglesias, Carmen M. Redondo Marey:
Improving imbalanced scientific text classification using sampling strategies and dictionaries. - Rosalía Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola
:
Evaluating the effect of unbalanced data in biomedical document classification. - Sérgio Matos, José Luís Oliveira:
Classification methods for finding articles describing protein-protein interactions in PubMed. - Rita Margarida Teixeira Ascenso
:
Bioinformatics tools help molecular characterization of Perkinsus olseni differentially expressed genes. - David N. Olivieri, José Faro
, Iván Gómez-Conde, Carlos E. Tadokoro:
Tracking T and B cells from two-photon microscopy imaging using constrained SMC clusters. - Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz
:
Predicting protein distance maps according to physicochemical properties. - Rui Camacho
, Max Pereira, Vítor Santos Costa
, Nuno A. Fonseca
, Carlos Adriano Gonçalves
, Carlos J. V. Simões, Rui M. M. Brito
:
A Relational Learning Approach to Structure-Activity Relationships in Drug Design Toxicity Studies. - Anália Lourenço
, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira
, Isabel Rocha:
A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways.
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