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ORCIDNucleic Acids Research, Volume 32
Volume 32, Database-Issue, January 1 2004
- Michael Y. Galperin
:
The Molecular Biology Database Collection: 2004 update. 3-22 - Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler:
GenBank: update. 23-26 - Tamara Kulikova, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Kirsty Bates, Paul Browne, Alexandra van den Broek, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, Maria Garcia-Pastor, Nicola Harte, Carola Kanz, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Peter Stoehr, Guenter Stoesser, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler:
The EMBL Nucleotide Sequence Database. 27-30 - Satoru Miyazaki, Hideaki Sugawara, Kazuho Ikeo, Takashi Gojobori, Yoshio Tateno:
DBJ in the stream of various biological data. 31-34 - David L. Wheeler, Deanna M. Church, Ron Edgar, Scott Federhen, Wolfgang Helmberg, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Tugba O. Suzek, Tatiana A. Tatusova, Lukas Wagner:
atabase resources of the National Center for Biotechnology Information: update. 35-40 - Hans-Werner Mewes, Clara Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp:
MIPS: analysis and annotation of proteins from whole genomes. 41-44 - Raphaël Leplae, Aline Hebrant, Shoshana J. Wodak, Ariane Toussaint:
ACLAME: A CLAssification of Mobile genetic Elements. 45-49 - Jan Paces, Adam Pavlícek, Radek Zika, Vladimir V. Kapitonov, Jerzy Jurka, Václav Paces:
HERVd: the Human Endogenous RetroViruses Database: update. 50 - Thierry-Pascal Baum, Nicolas Pasqual, Florence Thuderoz, Vivien Hierle, Denys Chaume, Marie-Paule Lefranc, Evelyne Jouvin-Marche, Patrice-Noël Marche, Jacques Demongeot:
IMGT/GeneInfo: enhancing V(D)J recombination database accessibility. 51-54 - Yogita Mantri, Kelly P. Williams:
Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities. 55-58 - Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, Shoba Ranganathan:
Xpro: database of eukaryotic protein-encoding genes. 59-63 - Thangavel Alphonse Thanaraj, Stefan Stamm, Francis Clark, Jean-Jack M. Riethoven, Vincent Le Texier, Juha Muilu:
ASD: the Alternative Splicing Database. 64-69 - Heike Pospisil, Alexander Herrmann, Ralf H. Bortfeldt, Jens G. Reich:
EASED: Extended Alternatively Spliced EST Database. 70-74 - Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, Kenta Nakai:
BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. 75-77 - Yutaka Suzuki, Riu Yamashita, Sumio Sugano, Kenta Nakai:
BTSS, DataBase of Transcriptional Start Sites: progress report 2004. 78-81 - Christoph D. Schmid, Viviane Praz, Mauro Delorenzi, Rouaïda Périer, Philipp Bucher:
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. 82-85 - Twyla T. Pohar, Hao Sun, Ramana V. Davuluri:
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development. 86-90 - Albin Sandelin, Wynand Alkema, Pär G. Engström, Wyeth W. Wasserman, Boris Lenhard:
JASPAR: an open-access database for eukaryotic transcription factor binding profiles. 91-94 - Jennifer F. Lee, Jay R. Hesselberth, Lauren Ancel Meyers, Andrew D. Ellington:
Aptamer Database. 95-100 - Jan Wuyts, Guy Perrière, Yves Van de Peer:
The European ribosomal RNA database. 101-103 - Pulcherie Gueneau de Novoa, Kelly P. Williams:
The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts. 104-108 - Sam Griffiths-Jones:
The microRNA Registry. 109-111 - Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker:
PIRSF: family classification system at the Protein Information Resource. 112-114 - Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh:
UniProt: the Universal Protein knowledgebase. 115-119 - K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai:
ProTherm, version 4.0: thermodynamic database for proteins and mutants. 120-121 - Tao Guo, Sujun Hua, Xinglai Ji, Zhirong Sun:
BSubLoc: database of protein subcellular localization. 122-124 - S. A. Fernando, P. Selvarani, Soma Das, Ch. Kiran Kumar, Sukanta Mondal, S. Ramakumar, Krishna Sekar:
THGS: a web-based database of Transmembrane Helices in Genome Sequences. 125-128 - Craig T. Porter, Gail J. Bartlett, Janet M. Thornton:
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. 129-133 - Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, Amos Bairoch:
Recent improvements to the PROSITE database. 134-137 - Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy:
The Pfam protein families database. 138-141 - Ivica Letunic, Richard R. Copley, Steffen Schmidt, Francesca D. Ciccarelli, Tobias Doerks, Jörg Schultz, Chris P. Ponting, Peer Bork:
SMART 4.0: towards genomic data integration. 142-144 - Thierry Hotelier, Ludovic Renault, Xavier Cousin, Vincent Nègre, Pascale Marchot, Arnaud Chatonnet:
ESTHER, the database of the /?hydrolase fold superfamily of proteins. 145-147 - David A. Lee, Sandrine Fefeu, Adrian A. Edo-Ukeh, Christine A. Orengo, Christine Slingsby:
EyeSite: a semi-automated database of protein families in the eye. 148-152 - A. Krupa, K. R. Abhinandan, Narayanaswamy Srinivasan:
KinG: a database of protein kinases in genomes. 153-155 - Jean-Christophe Gelly, Jérôme Gracy, Quentin Kaas, Dung Le-Nguyen, Annie Heitz, Laurent Chiche:
The KNOTTIN website and database: a new information system dedicated to the knottin scaffold. 156-159 - Neil D. Rawlings, Dominic P. Tolle, Alan J. Barrett:
MEROPS: the peptidase database. 160-164 - David Ruau, Jorge Duarte, Tarik Ourjdal, Guy Perrière, Vincent Laudet, Marc Robinson-Rechavi:
Update of NUREBASE: nuclear hormone receptor functional genomics. 165-167 - Akihiro Nakao, Maki Yoshihama, Naoya Kenmochi:
RPG: the Ribosomal Protein Gene database. 168-170 - Antonio Hermoso, Daniel Aguilar, Francesc X. Avilés, Enrique Querol:
TrSDB: a proteome database of transcription factors. 171-173 - Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, Andrew D. Ellington:
AANT: the Amino Aciduchleotide Interaction Database. 174-181 - Makio Tamura, Donna K. Hendrix, Peter S. Klosterman, Nancy R. B. Schimmelman, Steven E. Brenner, Stephen R. Holbrook:
SCOR: Structural Classification of RNA, version 2.0. 182-184 - Jordi Espadaler, Narcis Fernandez-Fuentes, Antonio Hermoso, Enrique Querol, Francesc X. Avilés, Michael J. E. Sternberg, Baldomero Oliva:
ArchDB: automated protein loop classification as a tool for structural genomics. 185-188 - John-Marc Chandonia, Gary Chung Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner:
The ASTRAL Compendium in 2004. 189-192 - R. Aroul Selvam, Rajkumar Sasidharan:
omIns: a web resource for domain insertions in known protein structures. 193-195 - Liam J. McGuffin, Stefano A. Street, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones:
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms. 196-199 - A. Vinayagam, Ganesan Pugalenthi, R. Rajesh, Ramanathan Sowdhamini:
SDBASE: a consortium of native and modelled disulphide bonds in proteins. 200-202 - Lucy A. Stebbings, Kenji Mizuguchi:
HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database. 203-207 - Quentin Kaas, Manuel Ruiz, Marie-Paule Lefranc:
IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data. 208-210 - Adel Golovin, Thomas J. Oldfield, John G. Tate, Samir S. Velankar, Geoffrey J. Barton, Harry Boutselakis, Dimitris Dimitropoulos, Joël Fillon, A. Hussain, John M. C. Ionides, Melford John, Peter A. Keller, Evgeny B. Krissinel, P. McNeil, Avi Naim, Richard H. Newman, Anne Pajon, Jorge Pineda, Abdel-Krim Rachedi, J. Copeland, Andrey Sitnov, Siamak Sobhany, Antonio Suarez-Uruena, G. J. Swaminathan, Mohammed Tagari, Swen Tromm, Wim F. Vranken, Kim Henrick:
E-MSD: an integrated data resource for bioinformatics. 211-216 - Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models, and associated resources. 217-222 - Philip E. Bourne, Kenneth J. Addess, Wolfgang Bluhm, Li Chen, Nita Deshpande, Zukang Feng, Ward Fleri, Rachel Kramer Green, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Helge Weissig, John D. Westbrook, Helen M. Berman:
The distribution and query systems of the RCSB Protein Data Bank. 223-225 - Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin:
SCOP database in 2004: refinements integrate structure and sequence family data. 226-229 - Jürgen Kopp, Torsten Schwede:
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. 230-234 - Martin Madera, Christine Vogel, Sarah K. Kummerfeld, Cyrus Chothia, Julian Gough:
The SUPERFAMILY database in 2004: additions and improvements. 235-239 - Fabrizio Ferrè, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich:
SURFACE: a database of protein surface regions for functional annotation. 240-244 - Keiran Fleming, Arne Müller, Robert M. MacCallum, Michael J. E. Sternberg:
3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes. 245-250 - Ioannis Michalopoulos, Gilleain M. Torrance, David R. Gilbert, David R. Westhead:
TOPS: an enhanced database of protein structural topology. 251-254 - Hester M. Wain, Michael J. Lush, Fabrice Ducluzeau, Varsha K. Khodiyar, Sue Povey:
Genew: the Human Gene Nomenclature Database, 2004 updates. 255-257 - Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource. 258-261
- Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, Rolf Apweiler:
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. 262-266 - Olivier Bodenreider:
The Unified Medical Language System (UMLS): integrating biomedical terminology. 267-270 - Ren Zhang, Hong-Yu Ou, Chun-Ting Zhang:
EG: a database of essential genes. 271-272 - Karsten Suhre, Jean-Michel Claverie:
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events. 273-276 - Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori:
The KEGG resource for deciphering the genome. 277-280 - Naomi Siew, Yaniv Azaria, Daniel Fischer:
The ORFanage: an ORFan database. 281-283 - Qinghu Ren, Katherine H. Kang, Ian T. Paulsen:
TransportDB: a relational database of cellular membrane transport systems. 284-288 - Urmila Kulkarni-Kale, Shriram Bhosle, G. Sunitha Manjari, Ashok S. Kolaskar:
VirGen: a comprehensive viral genome resource. 289-292 - Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, David S. Wishart:
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. 293-295 - Roy R. Chaudhuri, Arshad M. Khan, Mark J. Pallen:
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics. 296-299 - Margrethe H. Serres, Sulip Goswami, Monica Riley:
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins. 300-302 - Heladia Salgado, Socorro Gama-Castro, Agustino Martínez-Antonio, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Martín Peralta-Gil, Delfino Garcia-Alonso, Verónica Jiménez-Jacinto, Alberto Santos-Zavaleta, César Bonavides-Martínez, Julio Collado-Vides:
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. 303-306 - Aurélien Barré, Antoine de Daruvar, Alain Blanchard:
MolliGen, a database dedicated to the comparative genomics of Mollicutes. 307-310 - Karen R. Christie, Shuai Weng, Rama Balakrishnan, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry:
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. 311-314 - David James Sherman, Pascal Durrens, Emmanuelle Beyne, Macha Nikolski:
Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts. 315-318 - Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita:
SCMD: Saccharomyces cerevisiae Morphological Database. 319-322 - Gaëlle Lelandais, Stéphane Le Crom, Frédéric Devaux, Stéphane Vialette, George M. Church, Claude Jacq, Philippe Marc:
yMGV: a cross-species expression data mining tool. 323-325 - Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos:
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. 326-328 - Daniela Puiu, Shinichiro Enomoto, Gregory A. Buck, Mitchell S. Abrahamsen, Jessica C. Kissinger:
CryptoDB: the Cryptosporidium genome resource. 329-331 - Lisa Kreppel, Petra Fey, Pascale Gaudet, Eric M. Just, Warren A. Kibbe, Rex L. Chisholm, Alan R. Kimmel:
dictyBase: a new Dictyostelium discoideum genome database. 332-333 - Junichi Watanabe, Yutaka Suzuki, Masahide Sasaki, Sumio Sugano:
Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species. 334-338 - Christiane Hertz-Fowler, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou, Paul Mooney, Adrian Tivey, Matthew Berriman, Neil Hall, Kim Rutherford, Julian Parkhill, Alasdair C. Ivens, Marie-Adèle Rajandream, Bart Barrell:
GeneDB: a resource for prokaryotic and eukaryotic organisms. 339-343 - Michael Luchtan, Chetna Warade, D. Brent Weatherly, Wim M. Degrave, Rick L. Tarleton, Jessica C. Kissinger:
TcruziDB: an integrated Trypanosoma cruzi genome resource. 344-346 - Franck Samson, Véronique Brunaud, Sylvain Duchêne, Yannick de Oliveira, Michel Caboche, Alain Lecharny, Sébastien Aubourg:
FLAGdb++: a database for the functional analysis of the Arabidopsis genome. 347-350 - S. Mohseni-Zadeh, Alexandra Louis, Pierre Brézellec, Jean-Loup Risler:
PHYTOPROT: a database of clusters of plant proteins. 351-353 - Qunfeng Dong, Shannon D. Schlueter, Volker Brendel:
PlantGDB, plant genome database and analysis tools. 354-359 - Shu Ouyang, C. Robin Buell:
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. 360-363 - Manuel Ruiz, Mathieu Rouard, Louis Marie Raboin, Marc Lartaud, Pierre Lagoda, Brigitte Courtois:
TropGENE-DB, a multi-tropical crop information system. 364-367 - Nils Ole Steffens, Claudia Galuschka, Martin Schindler, Lorenz Bülow, Reinhard Hehl:
AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome. 368-372 - Heiko Schoof, Rebecca Ernst, Vladimir Nazarov, Lukas Pfeifer, Hans-Werner Mewes, Klaus F. X. Mayer:
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics. 373-376 - Wenming Zhao, Jing Wang, Ximiao He, Xiaobing Huang, Yongzhi Jiao, Mingtao Dai, Shulin Wei, Jian Fu, Ye Chen, Xiaoyu Ren, Yong Zhang, Peixiang Ni, Jianguo Zhang, Songgang Li, Jian Wang, Gane Ka-Shu Wong, Hongyu Zhao, Jun Yu, Huanming Yang, Jun Wang:
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. 377-382 - Junshi Yazaki, Keiichi Kojima, Kouji Suzuki, Naoki Kishimoto, Shoshi Kikuchi:
The Rice PIPELINE: a unification tool for plant functional genomics. 383-387 - Setsuko Komatsu, Keiichi Kojima, Kouji Suzuki, Kazuo Ozaki, Kenichi Higo:
Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003. 388-392 - Carolyn J. Lawrence, Qunfeng Dong, Mary L. Polacco, Trent E. Seigfried, Volker Brendel:
MaizeGDB, the community database for maize genetics and genomics. 393-397 - Nadim W. Alkharouf, Benjamin F. Matthews:
SGMD: the Soybean Genomics and Microarray Database. 398-400 - J. E. Mabey, M. J. Anderson, Peter F. Giles, Crispin J. Miller, Terri K. Attwood, Norman W. Paton, Erich Bornberg-Bauer, G. D. Robson, Stephen G. Oliver, David W. Denning:
CADRE: the Central Aspergillus Data REpository. 401-405 - Kristin C. Gunsalus, Wan-Chen Yueh, Philip MacMenamin, Fabio Piano:
RNAiDB and PhenoBlast: web tools for genome-wide phenotypic mapping projects. 406-410 - Todd W. Harris, Nansheng Chen, Fiona Cunningham, Marcela K. Tello-Ruiz, Igor Antoshechkin, Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Juancarlos Chan, Chao-Kung Chen, Wen J. Chen, Paul Davis, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Y. N. Lee, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky, Andrei Petcherski, Anthony Rogers, Aniko Sabo, Erich M. Schwarz, Kimberly Van Auken, Qinghua Wang, Richard Durbin, John Spieth, Paul W. Sternberg, Lincoln D. Stein:
WormBase: a multi-species resource for nematode biology and genomics. 411-417 - Reed J. Kelso, Michael Buszczak, Ana T. Quiñones, Claudia Castiblanco, Stacy Mazzalupo, Lynn Cooley:
Flytrap, a database documenting a GFP protein-trap insertion screen in Drosophila melanogaster. 418-420 - Jagan Srinivasan, Georg W. Otto, Ulrich Kahlow, Robert Geisler, Ralf J. Sommer:
AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus. 421-422 - Todd Wylie, John C. Martin, Michael Dante, Makedonka Dautova Mitreva, Sandra W. Clifton, Asif T. Chinwalla, Robert H. Waterston, Richard K. Wilson, James P. McCarter:
Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes. 423-426 - John Parkinson, Claire Whitton, Ralf Schmid, Marian Thomson, Mark L. Blaxter:
NEMBASE: a resource for parasitic nematode ESTs. 427-430 - Ida Schomburg, Antje Chang, Christian Ebeling, Marion Gremse, Christian Heldt, Gregor Huhn, Dietmar Schomburg:
BRENDA, the enzyme database: updates and major new developments. 431-433 - Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Wolfgang Fleischmann, Sinéad Boyce, Kristian B. Axelsen, Amos Bairoch, Dietmar Schomburg, Keith F. Tipton, Rolf Apweiler:
IntEnz, the integrated relational enzyme database. 434-437 - Cynthia J. Krieger, Peifen Zhang, Lukas A. Mueller, Alfred Wang, Suzanne M. Paley, Martha Arnaud, John Pick, Seung Yon Rhee, Peter D. Karp:
MetaCyc: a multiorganism database of metabolic pathways and enzymes. 438-442 - Christian Lemer, Erick Antezana, Fabian Couche, Frédéric Fays, Xavier Santolaria, Rekin's Janky, Yves Deville, Jean Richelle, Shoshana J. Wodak:
The aMAZE LightBench: a web interface to a relational database of cellular processes. 443-448 - Lukasz Salwínski, Christopher S. Miller, Adam J. Smith, Frank K. Pettit, James U. Bowie, David S. Eisenberg:
The Database of Interacting Proteins: 2004 update. 449-451 - Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler:
IntAct: an open source molecular interaction database. 452-455 - Ming Chen, Susana Lin, Ralf Hofestädt:
STCDB: Signal Transduction Classification Database. 456-458 - Christophe Andreoli, Holger Prokisch, K. Hörtnagel, Jakob C. Mueller, Martin Münsterkötter, Curt Scharfe, Thomas Meitinger:
MitoP2, an integrated database on mitochondrial proteins in yeast and man. 459-462 - Dawn Cotter, Purnima Guda, Eoin Fahy, Shankar Subramaniam:
MitoProteome: mitochondrial protein sequence database and annotation system. 463-467 - Ewan Birney, T. Daniel Andrews, Paul Bevan, Mario Cáccamo, Graham Cameron, Yuan Chen, Laura Clarke, Guy Coates, Tony Cox, James A. Cuff, Val Curwen, Tim Cutts, Thomas A. Down, Richard Durbin, Eduardo Eyras, Xosé M. Fernández-Suárez, Paul J. Gane, B. Gibbins, James G. R. Gilbert, Martin Hammond, H. Hotz, Vivek Iyer, Andreas Kähäri, Kerstin Jekosch, Arek Kasprzyk, Damian Keefe, Stephen Keenan, Heikki Lehväslaiho, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Glenn Proctor, Mark Rae, Stephen M. J. Searle, Guy Slater, Damian Smedley, James A. Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, Abel Ureta-Vidal, Cara Woodwark, Michele E. Clamp, Tim J. P. Hubbard:
Ensembl 2004. 468-470 - Takeshi Nagashima, Hideo Matsuda, Diego G. Silva, Nikolai Petrovsky, Akihiko Konagaya, Christian Schönbach:
FREP: a database of functional repeats in mouse cDNAs. 471-475 - Carol J. Bult, Judith A. Blake, Joel E. Richardson, James A. Kadin, Janan T. Eppig:
The Mouse Genome Database (MGD): integrating biology with the genome. 476-481 - Petr Divina, Jirí Forejt:
The Mouse SAGE Site: datab