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ORCIDNeuroinformatics, Volume 20
Volume 20, Number 1, January 2022
- John Darrell Van Horn
:
Editorial. 1-2 - John C. Gensel, Michael B. Orr:
Reflections on Data Sharing Practices in Spinal Cord Injury Research. 3-6 - Bradly Alicea, Richard Gordon, Thomas E. Portegys:
Data-Theoretical Synthesis of the Early Developmental Process. 7-23 - Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek James Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Moucek, Jean-Baptiste Poline, Prasun Roy, Stephen C. Strother, Tong Boon Tang, Paul H. E. Tiesinga, Thomas Wachtler, Daniel K. Wójcik, Maryann E. Martone:
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. 25-36 - Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek James Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Moucek, Jean-Baptiste Poline, Prasun Roy, Stephen C. Strother, Tong Boon Tang, Paul H. E. Tiesinga, Thomas Wachtler, Daniel K. Wójcik, Maryann E. Martone:
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. 37-38 - Carlos A. Almeida, Abel Torres-Espin, J. Russell Huie, Dongming Sun, Linda J. Noble-Haeusslein, Wise Young, Michael S. Beattie, Jacqueline C. Bresnahan, Jessica L. Nielson, Adam R. Ferguson:
Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery. 39-52 - Mo Modarres, David Cochran, David N. Kennedy, Richard C. Schmidt, Paula A. Fitzpatrick, Jean A. Frazier:
Biomarkers Based on Comprehensive Hierarchical EEG Coherence Analysis: Example Application to Social Competence in Autism (Preliminary Results). 53-62 - Jaime Gomez Ramirez, Javier Quilis-Sancho, Miguel A. Fernandez-Blazquez:
A Comparative Analysis of MRI Automated Segmentation of Subcortical Brain Volumes in a Large Dataset of Elderly Subjects. 63-72 - Leonel Mera-Jiménez, John F. Ochoa-Gómez:
Volume Reduction Techniques for the Classification of Independent Components of rs-fMRI Data: a Study with Convolutional Neural Networks. 73-90 - Nipuna Senanayake, Robert Podschwadt, Daniel Takabi, Vince D. Calhoun, Sergey M. Plis:
NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data. 91-108 - Christopher R. Madan:
Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain. 109-137 - Samir Das, Rida Abou-Haidar, Henri Rabalais, Sonia Denise Lai Wing Sun, Zaliqa Rosli, Krishna Chatpar, Marie-Noëlle Boivin, Mahdieh Tabatabaei, Christine Rogers, Melanie Legault, Derek Lo, Clotilde Degroot, Alain Dagher, Stephanie O. M. Dyke, Thomas M. Durcan, Annabel Seyller, Julien Doyon, Viviane Poupon, Edward A. Fon, Angela Genge, Guy A. Rouleau, Jason Karamchandani, Alan C. Evans:
The C-BIG Repository: an Institution-Level Open Science Platform. 139-153 - Matteo Damascelli, Todd S. Woodward, Nicole Sanford, Hafsa B. Zahid, Ryan Lim, Alexander Scott, John K. Kramer:
Multiple Functional Brain Networks Related to Pain Perception Revealed by fMRI. 155-172 - Saige Rutherford, Pascal Sturmfels, Mike Angstadt, Jasmine L. Hect, Jenna Wiens, Marion I. van den Heuvel, Dustin Scheinost, Chandra Sekhar Sripada, Moriah E. Thomason:
Automated Brain Masking of Fetal Functional MRI with Open Data. 173-185 - Maxwell Adam Levinson, Justin Niestroy, Sadnan Al Manir, Karen Fairchild, Douglas E. Lake, J. Randall Moorman, Timothy W. Clark:
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. 187-202 - Abel Torres-Espin, Carlos A. Almeida, Austin Chou, J. Russell Huie, Michael Chiu, Romana Vavrek, Jeff Sacramento, Michael B. Orr, John C. Gensel, Jeffrey S. Grethe, Maryann E. Martone, Karim Fouad, Adam R. Ferguson, Warren Alilain, Mark Bacon, Nicholas Batty, Michael Beattie, Jacqueline Bresnahan, Emily Burnside, Sarah Busch, Randall Carpenter, Isaac Francos Quijorna, Xiaohui Guo, Agnes Haggerty, Sarah Haroon, Jack Harris, Lyn Jakeman, Linda Jones, Naomi Kleitman, Timothy Kopper, Michael Lane, Francisco Magana, David Magnuson, Ines Maldonado, Verena May, Katelyn McFarlane, Kazuhito Morioka, Martin Oudega, Philip Leo Pascual, Jean-Baptiste Poline, Ephron S. Rosenzweig, Emma Schmidt, Wolfram Tetzlaff, Lana Zholudeva:
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org). 203-219 - Aidan E. Sullivan, Susan J. Tappan, P. J. Angstman, A. Rodriguez, G. C. Thomas, D. M. Hoppes, M. A. Abdul-Karim, Maci L. Heal, Jack R. Glaser:
A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling. 221-240 - João P. G. Santos, Kadri Pajo, Daniel Trpevski, Andrey Stepaniuk, Olivia Eriksson, Anu G. Nair, Daniel Keller, Jeanette Hellgren Kotaleski, Andrei Kramer:
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience. 241-259 - Jessica A. Turner, Vince D. Calhoun, Paul M. Thompson, Neda Jahanshad, Christopher R. K. Ching, Sophia I. Thomopoulos, Eric Verner, Gregory P. Strauss, Anthony O. Ahmed, Matthew D. Turner, Sunitha Basodi, Judith M. Ford, Daniel H. Mathalon, Adrian Preda, Aysenil Belger, Bryon A. Mueller, Kelvin O. Lim, Theo G. M. van Erp:
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability. 261-275 - Richard Fitzpatrick, Melanie I. Stefan:
Validation Through Collaboration: Encouraging Team Efforts to Ensure Internal and External Validity of Computational Models of Biochemical Pathways. 277-284
Volume 20, Number 2, April 2022
- Massimiliano Zanin, Ilinka Ivanoska, Bahar Güntekin, Görsev Yener, Tatjana Loncar-Turukalo, Niksa Jakovljevic, Olivera Sveljo, David Papo:
A Fast Transform for Brain Connectivity Difference Evaluation. 285-299 - Wen Zhang, B. Blair Braden, Gustavo Miranda, Kai Shu, Suhang Wang, Huan Liu, Yalin Wang:
Integrating Multimodal and Longitudinal Neuroimaging Data with Multi-Source Network Representation Learning. 301-316 - Kees M. van Hespen, Hugo J. Kuijf, Jeroen Hendrikse, Peter R. Luijten, Jaco J. M. Zwanenburg:
Blood Flow Velocity Pulsatility and Arterial Diameter Pulsatility Measurements of the Intracranial Arteries Using 4D PC-MRI. 317-326 - Yi Wang, Maowen Xu, Lijun Geng, Yi Zhao, Zhe Guo, Yangyu Fan, Yilong Niu:
DTI Atlases Evaluations. 327-351 - Lanting Li, Hao Jiang, Guangqi Wen, Peng Cao, MingYi Xu, Xiaoli Liu, Jinzhu Yang, Osmar R. Zaïane:
TE-HI-GCN: An Ensemble of Transfer Hierarchical Graph Convolutional Networks for Disorder Diagnosis. 353-375 - Kelly Rootes-Murdy, Harshvardhan Gazula, Eric Verner, Ross Kelly, Thomas DeRamus, Sergey M. Plis, Anand D. Sarwate, Jessica A. Turner, Vince D. Calhoun:
Federated Analysis of Neuroimaging Data: A Review of the Field. 377-390 - Maryam Ghanbari, Zhen Zhou, Li-Ming Hsu, Ying Han, Yu Sun, Pew-Thian Yap, Han Zhang, Dinggang Shen:
Altered Connectedness of the Brain Chronnectome During the Progression to Alzheimer's Disease. 391-403 - Wieslaw L. Nowinski:
Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas. 405-426 - Andrea Bizzego, Atiqah Azhari, Gianluca Esposito:
Assessing Computational Methods to Quantify Mother-Child Brain Synchrony in Naturalistic Settings Based on fNIRS Signals. 427-436 - Daniel Franco-Barranco, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras:
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes. 437-450 - Francisco Afonso Raposo, David Martins de Matos, Ricardo Ribeiro:
Learning Low-Dimensional Semantics for Music and Language via Multi-Subject fMRI. 451-461 - Kay Robbins, Dung Truong, Alexander Jones, Ian Callanan, Scott Makeig:
Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED). 463-481 - Cailey I. Kerley, Shikha Chaganti, Tin Q. Nguyen, Camilo Bermudez, Laurie E. Cutting, Lori L. Beason-Held, Thomas A. Lasko, Bennett A. Landman:
pyPheWAS: A Phenome-Disease Association Tool for Electronic Medical Record Analysis. 483-505 - Jean-Baptiste Poline, David N. Kennedy, Friedrich T. Sommer, Giorgio A. Ascoli, David C. Van Essen, Adam R. Ferguson, Jeffrey S. Grethe, Michael Hawrylycz, Paul M. Thompson, Russell A. Poldrack, Satrajit S. Ghosh, David B. Keator, Thomas L. Athey, Joshua T. Vogelstein, Helen S. Mayberg, Maryann E. Martone:
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. 507-512 - Nickolas Fularczyk, Jessica Di Re, Laura Stertz, Consuelo Walss-Bass, Fernanda Laezza, Demetrio Labate:
A Learning Based Framework for Disease Prediction from Images of Human-Derived Pluripotent Stem Cells of Schizophrenia Patients. 513-523 - Shengdian Jiang, Yimin Wang, Lijuan Liu, Liya Ding, Zongcai Ruan, Hong-Wei Dong, Giorgio A. Ascoli, Michael Hawrylycz, Hongkui Zeng, Hanchuan Peng:
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains. 525-536
Volume 20, Number 3, July 2022
- Parikshat Sirpal, Rafat Damseh, Ke Peng, Dang Khoa Nguyen, Frédéric Lesage:
Multimodal Autoencoder Predicts fNIRS Resting State From EEG Signals. 537-558 - Ittai Shamir, Yaniv Assaf:
Modelling Cortical Laminar Connectivity in the Macaque Brain. 559-573 - Xiaobing Feng, Yingrong Hua, Jianjun Zou, Shuopeng Jia, Jiatong Ji, Yan Xing, Junshan Zhou, Jun Liao:
Intelligible Models for HealthCare: Predicting the Probability of 6-Month Unfavorable Outcome in Patients with Ischemic Stroke. 575-585 - Laurence Vass, M. J. Moore, Taylor Hanayik, Grant Mair, S. T. Pendlebury, Nele Demeyere, Mark Jenkinson:
A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients. 587-598 - Craig Poskanzer, Mengting Fang, Aidas Aglinskas, Stefano Anzellotti:
Controlling for Spurious Nonlinear Dependence in Connectivity Analyses. 599-611 - Fubing Ouyang, Xinran Chen, Jiahui Liang, Jianle Li, Zimu Jiang, Yicong Chen, Zhicong Yan, Jinsheng Zeng, Shihui Xing:
Population-Average Brain Templates and Application to Automated Voxel-Wise Analysis Pipelines for Cynomolgus Macaque. 613-626 - Serap Aydin:
Cross-validated Adaboost Classification of Emotion Regulation Strategies Identified by Spectral Coherence in Resting-State. 627-639 - Nicolás Nieto, Francisco Javier Ibarrola, Victoria Peterson, Hugo Leonardo Rufiner, Ruben D. Spies:
Extreme Learning Machine Design for Dealing with Unrepresentative Features. 641-650 - Lavanya Umapathy, Mahesh Bharath Keerthivasan, Natalie M. Zahr, Ali Bilgin, Manojkumar Saranathan:
Convolutional Neural Network Based Frameworks for Fast Automatic Segmentation of Thalamic Nuclei from Native and Synthesized Contrast Structural MRI. 651-664 - Andrea Bizzego, Atiqah Azhari, Gianluca Esposito:
Reproducible Inter-Personal Brain Coupling Measurements in Hyperscanning Settings With functional Near Infra-Red Spectroscopy. 665-675 - Andrea Bizzego, Atiqah Azhari, Gianluca Esposito:
Correction to: Reproducible Inter-Personal Brain Coupling Measurements in Hyperscanning Settings With functional Near Infra-Red Spectroscopy. 677 - Nirmal Das, Ewa Baczynska, Monika Bijata, Blazej Ruszczycki, Andre Zeug, Dariusz Plewczynski, Punam Kumar Saha, Evgeni Ponimaskin, Jakub Wlodarczyk, Subhadip Basu:
3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines. 679-698 - Nirmal Das, Ewa Baczynska, Monika Bijata, Blazej Ruszczycki, Andre Zeug, Dariusz Plewczynski, Punam Kumar Saha, Evgeni Ponimaskin, Jakub Wlodarczyk, Subhadip Basu:
Correction to: 3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines. 699 - Jianzhuo Yan, Lihong Chen, Yongchuan Yu, Hongxia Xu, Zhe Xu, Ying Sheng, Jianhui Chen:
Neuroimaging-ITM: A Text Mining Pipeline Combining Deep Adversarial Learning with Interaction Based Topic Modeling for Enabling the FAIR Neuroimaging Study. 701-726 - Matteo Demuru, Dorien van Blooijs, Willemiek Zweiphenning, Dora Hermes, Frans S. S. Leijten, Maeike Zijlmans:
A Practical Workflow for Organizing Clinical Intraoperative and Long-term iEEG Data in BIDS. 727-736 - Chenhao Tan, Xin Liu, Gaoyan Zhang:
Inferring Brain State Dynamics Underlying Naturalistic Stimuli Evoked Emotion Changes With dHA-HMM. 737-753 - Logan A. Walker, Jennifer S. Williams, Ye Li, Douglas H. Roossien, Wei Jie Lee, Nigel S. Michki, Dawen Cai:
nGauge: Integrated and Extensible Neuron Morphology Analysis in Python. 755-764 - Francisco Estella, Esther Suarez, Beatriz Lozano, Elena Santamarta, Antonio Saiz, Fernando Rojas, Ignacio Rojas, Marta Blázquez, Lydia Nader, Javier Sol, Fernando Seijo:
Design and Application of Automated Algorithms for Diagnosis and Treatment Optimization in Neurodegenerative Diseases. 765-775 - Ishaan Batta, Anees Abrol, Zening Fu, Adrian Preda, Theo G. M. van Erp, Vince D. Calhoun:
Building Models of Functional Interactions Among Brain Domains that Encode Varying Information Complexity: A Schizophrenia Case Study. 777-791 - Thomas H. Gillespie, Shreejoy J. Tripathy, Mohameth-François Sy, Maryann E. Martone, Sean L. Hill:
The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types. 793-809 - Martin Grignard, Christophe Geuzaine, Christophe Phillips:
Shamo: A Tool for Electromagnetic Modeling, Simulation and Sensitivity Analysis of the Head. 811-824 - Michiel Van Dyck, Rajiv K. Mishra, Francisco Pestana, Peter Verstraelen, Hilde Lavreysen, Juan D. Pita-Almenar, Nachiket D. Kashikar, Winnok H. De Vos:
Correction to: High‑throughput Analysis of Synaptic Activity in Electrically Stimulated Neuronal Cultures. 825
Volume 20, Number 4, October 2022
- Joanna Duda-Golawska, Kamil K. Imbir, Jaroslaw Zygierewicz:
ERP Analysis Using a Multi-Channel Matching Pursuit Algorithm. 827-862 - Berke Kiliç, Serap Aydin:
Classification of Contrasting Discrete Emotional States Indicated by EEG Based Graph Theoretical Network Measures. 863-877 - Vyom Raval, Kevin P. Nguyen, Marco Pinho, Richard B. Dewey Jr., Madhukar H. Trivedi, Albert Montillo:
Pitfalls and Recommended Strategies and Metrics for Suppressing Motion Artifacts in Functional MRI. 879-896 - Nikita Davydov, Lucas Peek, Tibor Auer, Evgeny Prilepin, Nicolas Gninenko, Dimitri Van De Ville, Artem V. Nikonorov, Yury Koush:
Real-time and Recursive Estimators for Functional MRI Quality Assessment. 897-917 - João Angelo Ferres Brogin, Jean Faber, Douglas Domingues Bueno:
Estimating the Parameters of the Epileptor Model for Epileptic Seizure Suppression. 919-941 - Nalini M. Singh, Jordan B. Harrod, Sandya Subramanian, Mitchell B. Robinson, Ken Chang, Suheyla Cetin Karayumak, Adrian Vasile Dalca, Simon B. Eickhoff, Michael Fox, Loraine Franke, Polina Golland, Daniel Haehn, Juan Eugenio Iglesias, Lauren J. O'Donnell, Yangming Ou, Yogesh Rathi, Shan H. Siddiqi, Haoqi Sun, M. Brandon Westover, Susan L. Whitfield-Gabrieli, Randy L. Gollub:
How Machine Learning is Powering Neuroimaging to Improve Brain Health. 943-964 - Zulqarnain Khan, Yiyu Wang, Eli Sennesh, Jennifer G. Dy, Sarah Ostadabbas, Jan-Willem van de Meent, J. Benjamin Hutchinson, Ajay B. Satpute:
A Computational Neural Model for Mapping Degenerate Neural Architectures. 965-979 - Sunitha Basodi, Rajikha Raja, Bhaskar Ray, Harshvardhan Gazula, Anand D. Sarwate, Sergey M. Plis, Jingyu Liu, Eric Verner, Vince D. Calhoun:
Decentralized Brain Age Estimation Using MRI Data. 981-990 - Moritz Gerster, Gunnar Waterstraat, Vladimir Litvak, Klaus Lehnertz, Alfons Schnitzler, Esther Florin, Gabriel Curio, Vadim V. Nikulin:
Separating Neural Oscillations from Aperiodic 1/f Activity: Challenges and Recommendations. 991-1012 - Chao Huang, Fleur Zeldenrust, Tansu Celikel:
Cortical Representation of Touch in Silico. 1013-1039 - Nicolas Fuentes, Alexis Garcia, Ramón Guevara, Roberto Orofino, Diego M. Mateos:
Complexity of Brain Dynamics as a Correlate of Consciousness in Anaesthetized Monkeys. 1041-1054 - Na Zhao, Juan Yue, Zi-Jian Feng, Yang Qiao, Qiu Ge, Li-Xia Yuan, Jue Wang, Yu-Tao Xiang, Yufeng Zang:
The Location Reliability of the Resting-State fMRI FC of Emotional Regions Towards rTMS Therapy. 1055-1064 - Ying-Hwey Nai, Yee-Hsin Tay, Tomotaka Tanaka, Christopher Chen, Edward G. Robins, Anthonin Reilhac:
Comparison of Three Automated Approaches for Classification of Amyloid-PET Images. 1065-1075 - Michel Hu, Monica Frega, Else Tolner, Arn M. J. M. van den Maagdenberg, J. P. Frimat, Joost le Feber:
MEA-ToolBox: an Open Source Toolbox for Standardized Analysis of Multi-Electrode Array Data. 1077-1092 - Etienne St-Onge, Eleftherios Garyfallidis, D. Louis Collins:
Fast Streamline Search: An Exact Technique for Diffusion MRI Tractography. 1093-1104 - Shenjun Zhong, Zhaolin Chen, Gary F. Egan:
Auto-encoded Latent Representations of White Matter Streamlines for Quantitative Distance Analysis. 1105-1120 - Andrés Carrasco, Dorothy E. Oorschot, Paolo Barzaghi, Jeffery R. Wickens:
Three-Dimensional Spatial Analyses of Cholinergic Neuronal Distributions Across The Mouse Septum, Nucleus Basalis, Globus Pallidus, Nucleus Accumbens, and Caudate-Putamen. 1121-1136 - Nicolò Pecco, Matteo Canini, Kelsey H. H. Mosser, Martina Caglioni, Paola Scifo, Antonella Castellano, Paolo Cavoretto, Massimo Candiani, Cristina Baldoli, Andrea Falini, Pasquale Anthony Della Rosa:
RS-FetMRI: a MATLAB-SPM Based Tool for Pre-processing Fetal Resting-State fMRI Data. 1137-1154 - Hang Zhou, Tingting Cao, Tian Liu, Shijie Liu, Lu Chen, Yijun Chen, Qing Huang, Wei Ye, Shaoqun Zeng, Tingwei Quan:
Super-resolution Segmentation Network for Reconstruction of Packed Neurites. 1155-1167 - Sarah M. Ismail Hosni, Seyyed Bahram Borgheai, John McLinden, Shaotong Zhu, Xiaofei Huang, Sarah Ostadabbas, Yalda Shahriari:
A Graph-Based Nonlinear Dynamic Characterization of Motor Imagery Toward an Enhanced Hybrid BCI. 1169-1189
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