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ORCIDPeerJ PrePrints, Volume 5
Volume 5, 2017
- Mark D. Wilkinson
, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier:
Interoperability and FAIRness through a novel combination of Web technologies. e2522 - Guilherme Avelino, Marco Túlio Valente, André C. Hora:
What is the Truck Factor of popular GitHub applications? A first assessment. e1233 - Chun-Nan Hsu, Anita E. Bandrowski, Jeffrey S. Grethe, Maryann E. Martone:
Assessing value of biomedical digital repositories. e2688 - Soumya Banerjee:
An artificial immune system approach to automated program verification: Towards a theory of undecidability in biological computing. e2690 - Emmanuel Seaman, Jason Du:
System-on-chip sensor fusion front-end self-healing design for network-on-chip digital communications. e2694 - Carlos J. Corrada-Bravo, Rafael Álvarez Berríos, T. Mitchell Aide:
Species-specific audio detection: A comparison of three template-based classification algorithms using random forests. e2713 - Martin Leroux, Sofiane Achiche, Maxime Raison:
Assessment of accuracy for target detection in 3D-space using eye tracking and computer vision. e2718 - Serena Dotolo, Angelo M. Facchiano:
Pharmacophore modeling, virtual computational screening and biological evaluation studies. e2721 - Eddie A. Santos, Karim Ali:
Lifting the curse of stringly-typed code. e2723 - Elham Shahab, Hadi Abdolrahimpour:
A comprehensive investigation of visual cryptography and its role in secure communications. e2682 - Moritz Beller, Niels Spruit, Andy Zaidman:
How developers debug. e2743 - Chin-Wei Huang, Luc Baron, Marek Balazinski, Sofiane Achiche:
Comprehensive model optimization in pulp quality prediction: a machine learning approach. e2749 - Ankur Roy Chowdhury:
IoT and Robotics: a synergy. e2760 - Florian Wagner:
The XL-mHG test for gene set enrichment. e1962 - Shaiful Alam Chowdhury, Stephanie Gil, Stephen Romansky, Abram Hindle:
Did I make a mistake? Finding the impact of code change on energy regression. e2419 - Daniele D'Agostino, Luca Roverelli, Gabriele Zereik, Andrea De Luca, Ruben Salvaterra, Andrea Belfiore, Gianni Lisini, Giovanni Novara, Andrea Tiengo:
A microservice-based portal for X-ray transient and variable sources. e2519
- Nan Wang:
Text parsing with Markov logic network. e2774 - Evangelia I. Zacharaki:
Prediction of protein function using a deep convolutional neural network ensemble. e2778 - Markus Luczak-Rösch, Ramine Tinati, Kieron O'Hara:
What an entangled Web we weave: An information-centric approach to socio-technical systems. e2789 - Cheng Lee:
A survey of the World Wide Web evolution with respect to security issues. e2793 - Olga Krestinskaya, Alex Pappachen James:
Facial emotion recognition using Min-Max similarity classifier. e2794 - Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell:
CodonGenie: optimised ambiguous codon design tools. e2797 - Yi Liu, Kwangjo Kim:
Understanding Web 2.0 service models, applications, reflections, perspectives, and beyond. e2811 - Alessandro Costa, Eva Sciacca, Fabio Vitello, Ugo Becciani, Piero Massimino, Simone Riggi, David Sanchez:
An innovative workspace for the Cherenkov Telescope Array. e2817 - Eva Sciacca, Fabio Vitello, Ugo Becciani, Alessandro Costa, Ákos Hajnal, Péter Kacsuk, Sergio Molinari, Anna Maria Di Giorgio, Eugenio Schisano, Scige John Liu, Davide Elia, Stefano Cavuoti, Giuseppe Riccio, Massimo Brescia:
Milky way analysis through a Science Gateway: workflows and resource monitoring. e2818 - Michael G. Zentner, Richard Zink:
HUBzero and CatalyzeCare: A community driven platform for data sharing and collaboration in medical informatics research. e2819 - Eugenio Del Prete, Angelo M. Facchiano, Aldo Profumo, Claudia Angelini, Paolo Romano:
Suitable reporting for the reproducible research: an added value in the analysis of proteomics data. e2823 - Richard Allen White III, Ajay Panyala, Kevin Glass, Sean Colby, Kurt R. Glaesemann, Christer Jansson, Janet K. Jansson:
MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data. e2825 - Richard Grunzke, Volker Hartmann, Thomas Jejkal, Ajinkya Prabhune, Hendrik Herold, Aline Deicke, Alexander Hoffmann, Torsten Schrade, Gotthard Meinel, Sonja Herres-Pawlis, Rainer Stotzka, Wolfgang E. Nagel:
Towards a metadata-driven multi-community research data management service. e2831 - Paul Fremantle, Philip J. Scott:
A survey of secure middleware for the Internet of Things. e1241 - Don L. Jewett:
When scholars use Knowledge-Step Forums to create Web-Compended Guides to the literature of their fields, paradigm-shifts will occur in the processes of knowledge creation and in graduate education. e1568 - Maria A. Brovelli, Candan E. Kilsedar, Patrick J. Hogan, Gabriele Prestifilippo, Giorgio Zamboni:
NASA World Wind: virtual globe for an open smart city. e2139 - Soumya Banerjee:
A computational technique to estimate within-host productively infected cell lifetimes in emerging viral infections. e2621 - Albert Krewinkel, Robert Winkler:
Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar. e2648
- Donatello Elia, Alessandra Nuzzo, Paola Nassisi, Sandro Fiore, Ignacio Blanquer, Francisco V. Brasileiro, Iana A. A. Rufino, Arie C. Seijmonsbergen, Niels S. Anders, Carlos de Oliveira Galvao, John E. de B. L. Cunha, Mariane de Sousa-Baena, Vanderlei Perez Canhos, Giovanni Aloisio:
A Science gateway for biodiversity and climate change research. e2834 - Atilla Özgür, Hamit Erdem:
The impact of using large training data set KDD99 on classification accuracy. e2838 - Christopher Mohr, Andreas Friedrich, David Wojnar, Erhan Kenar, Aydin Can Polatkan, Marius Cosmin Codrea, Stefan Czemmel, Oliver Kohlbacher, Sven Nahnsen:
qPortal - A science gateway for biomedical applications. e2839 - Richard Allen White III, Joseph Brown, Sean Colby, Christopher C. Overall, Joon-Yong Lee, Jeremy Zucker, Kurt R. Glaesemann, Christer Jansson, Janet K. Jansson:
ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data. e2843 - Ken Arroyo Ohori, Hugo Ledoux, Jantien E. Stoter:
Visualising higher-dimensional space-time and space-scale objects as projections to ℝ3. e2844 - Ian J. Taylor, Jarek Nabrzyski:
Towards a dashboard environment for repeating and reusing research. e2845 - Luis de la Garza, Fabian Aicheler, Oliver Kohlbacher:
From the desktop to the grid and cloud: conversion of KNIME workflows to WS-PGRADE. e2849 - Michael Mayo, Maisa Daoud:
Aesthetic local search of wind farm layouts. e2864 - Jacob M. Schreiber, William S. Noble:
Finding the optimal bayesian network given a constraint graph. e2872 - Christopher J. Lortie:
A review of R for Data Science: key elements and a critical analysis. e2873 - Andrew E. Webb, Thomas A. Walsh, Mary J. O'Connell:
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses. e1895 - Markus J. Ankenbrand, Sonja Hohlfeld, Thomas Hackl, Frank Förster:
AliTV-interactive visualization of whole genome comparisons. e2348 - Erwan Bocher, Olivier Ertz:
A redesign of OGC Symbology Encoding standard for sharing cartography. e2415
- Jürgen Cito, Gerald Schermann, Erik Wittern, Philipp Leitner, Sali Zumberi, Harald C. Gall:
An empirical analysis of the Docker container ecosystem on GitHub. e2905 - Rory Mitchell, Eibe Frank:
Accelerating the XGBoost algorithm using GPU computing. e2911 - Hakan Ayral, Songül Albayrak:
Parallel and in-process compilation of individuals for genetic programming on GPU. e2936 - Yu Wu, Na Wang, Jessica Kropczynski, John M. Carroll:
The appropriation of GitHub for curation. e2952 - Brook G. Milligan:
Probabilistic graph models for landscape genetics. e2225 - Roberto Santos, Adam Algar, Richard Field, Sean Mayes:
Integrating GIScience and Crop Science datasets: a study involving genetic, geographic and environmental data. e2248
- Radhwan M. Abduallah, Zuriati Ahmad Zukarnain:
Vertical handoff algorithm for different wireless technologies. e2970 - Pascal Brokmeier:
Project level effects of gender on contribution evaluation on GitHub. e2989 - Shitij Bhargava, Tsung-Ting Kuo, Ankit Goyal, Vincent Kuri, Gordon Lin, Chun-Nan Hsu:
bioPDFX: preparing PDF scientific articles for biomedical text mining. e2993 - Flávio Codeço Coelho, Bruno Cuconato:
Secure trustless text processing of sensitive documents. e2994
- Ibrahim Ghafir, Mohammad Hammoudeh, Vaclav Prenosil:
Disguised executable files in spear-phishing emails: Detecting the point of entry in advanced persistent threat. e2998 - Stephanie R. Debats, Lyndon D. Estes, David R. Thompson, Kelly K. Caylor:
Integrating active learning and crowdsourcing into large-scale supervised landcover mapping algorithms. e3004 - Jie Xie:
Multi-label classification of frog species via deep learning. e3007
- Silvio Peroni, Francesco Osborne, Angelo Di Iorio, Andrea Giovanni Nuzzolese, Francesco Poggi, Fabio Vitali, Enrico Motta:
Research Articles in Simplified HTML: a Web-first format for HTML-based scholarly articles. e2513 - Haydee Artaza, John M. Hancock, Rafael C. Jiménez, Manuel Corpas:
PIsCO: A Performance indicators framework for collection of bioinformatics resource metrics. e3112 - Leonardo Carvalho, Eduardo Bezerra, Gustavo Paiva Guedes, Laura Assis, Leonardo Silva de Lima, Rafael Barbastefano, Artur Ziviani, Fábio Porto, Eduardo S. Ogasawara:
A Mixed Graph Framework to evaluate the complementarity of communication Tools. e3114
- Eddie A. Santos, Joshua Charles Campbell, Abram Hindle, José Nelson Amaral:
Finding and correcting syntax errors using recurrent neural networks. e3123 - Joseph Keenan St. Pierre:
A Simple Encryption Algorithm. e3128 - Pierre Monnin, Clément Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet:
PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units. e3140 - J. Frederico Carvalho, Mikael Vejdemo-Johansson, Danica Kragic, Florian T. Pokorny:
An algorithm for calculating top-dimensional bounding chains. e3151 - Jennifer Bryan:
Excuse me, do you have a moment to talk about version control? e3159 - Benjamin S. Baumer:
Lessons from between the white lines for isolated data scientists. e3160 - Amelia McNamara, Nicholas J. Horton:
Wrangling categorical data in R. e3163 - Yongmei Zhai, Shenglong Chen, Qianwen Ouyang:
GIS-based seismic hazard prediction system for urban earthquake disaster prevention planning. e3165 - Zev Ross, Hadley Wickham, David Robinson:
Declutter your R workflow with tidy tools. e3180 - Mine Çetinkaya-Rundel, Colin W. Rundel:
Infrastructure and tools for teaching computing throughout the statistical curriculum. e3181 - Ricardo Bion, Robert Chang, Jason Goodman:
How R helps Airbnb make the most of its data. e3182 - Dirk Eddelbuettel, James Joseph Balamuta:
Extending R with C++: A Brief Introduction to Rcpp. e3188 - Sean J. Taylor, Benjamin Letham:
Forecasting at Scale. e3190 - Jaderick P. Pabico:
Human-Borg dynamics during a cybernetic alien invasion. e3198 - Steven Wu, Luke Bornn:
Modeling offensive player movement in professional basketball. e3201 - Sankhanil Dey, Ranjan Ghosh:
Extended SAC: A review and new algorithms of differential cryptanalysis of 4-bit s-boxes and strict avalanche criterion of BFs and 4-bit s-boxes again with a new extension to HO-SAC criterion. e3202 - Lance A. Waller:
Documenting and evaluating Data Science contributions in academic promotion in Departments of Statistics and Biostatistics. e3204 - Daniel T. Kaplan:
Teaching stats for data science. e3205
- Yann H. Chemin, Ian A. Crawford, Peter Grindrod, Louise Alexander:
Assessment of spectral properties of Apollo 12 landing site. e2124 - Danila Vella, Simone Marini, Francesca Vitali, Riccardo Bellazzi:
MTopGO: a tool for module identification in PPI Networks. e3229 - Carlo Maj, Elena Milanesi, Massimo Gennarelli, Luciano Milanesi, Ivan Merelli:
Epistasis analysis reveals associations between gene variants and bipolar disorder. e3242 - Kyle Chard, Eli Dart, Ian T. Foster, David J. Shifflett, Steven Tuecke, Jason Williams:
The Modern Research Data Portal: A design pattern for networked, data-intensive science. e3194 - Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S. Nobile, Ivan Merelli, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri, Pietro Liò:
GenHap: A novel computational method based on genetic algorithms for haplotype assembly. e3246 - Sankhanil Dey, Ranjan Ghosh:
Linear Approximation Analysis: an improved technique for linear cryptanalysis of 4-bit Bijective Crypto S-Boxes. e3249 - Mikael Vejdemo-Johansson:
Weighted growth functions of automatic groups. e3256 - Sankhanil Dey, Ranjan Ghosh:
Multiplication over Extended Galois Field: A New Approach to Find Monic Irreducible Polynomials over Galois Field GF(p^q). e3258 - Sankhanil Dey, Ranjan Ghosh:
Multiplication and Division over Extended Galois Field GF(p^q): A new Approach to find Monic Irreducible Polynomials over any Galois Field GF(p^q). e3259 - Alessandro Zandonà, Matilde Francescon, Maya Bronfeld, Andrea Calvo, Adriano Chiò, Barbara Di Camillo:
A Dynamic Bayesian Network model for simulation of disease progression in Amyotrophic Lateral Sclerosis patients. e3262 - Mohammad Masudur Rahman, Chanchal K. Roy:
Improved query reformulation for concept location using CodeRank and document structures. e3186 - Raúl Amado Cattáneo, Luis Diambra, Andrés Norman McCarthy:
Phylogenomics of 42 tomato chloroplasts using assembly and alignment-free method. e3271 - Valentina Grasso, Imad Zaza, Federica Zabini, Gianni Pantaleo, Paolo Nesi, Alfonso Crisci:
Weather events identification in social media streams: tools to detect their evidence in Twitter. e2241 - Alfonso Crisci, Luca Congedo, Marco Morabito, Michele Munafò:
Summer Heat Risk Index: how to integrate recent climatic changes and soil consumption component. e2234 - Soumya Banerjee:
Lymph node inspired computing: towards holistic immune system inspired algorithms for human-engineered complex systems. e3150 - Lukasz Slugocki, Robert Czerniawski:
Impact of the catchment land use on some factors of lakes trophic status: a GIS approach. e2203 - Alicia Fernandez-Rovira, Rocio Lavado-Valenzuela, Miguel Ángel Guerrero-Martinez, Ismael Navas-Delgado, José Francisco Aldana Montes:
Melanoma expression analysis with Big Data technologies. e3260 - Pasquale Nino, Silvia Vanino, Flavio Lupia, Guido D'Urso, Carlo De Michele, Giuseppe Pulighe, Guido Bonati:
Mapping irrigated areas using multi-sensor remote sensing data in a Mediterranean environment. e2155 - Sankhanil Dey, Ranjan Ghosh:
Crypto-Archaeology: unearthing design methodology of DES s-boxes. e3285 - Simone Sterlacchini, Marco Zazzeri, Giacomo Cappellini, Michele Pastormerlo, Alessandro Bonazzi:
An Open source GIS-based tool for economic loss estimation due to flood events. e2228 - Danila Vella, Allan Tucker, Riccardo Bellazzi:
Stability analysis of MTopGO for module identification in PPI networks. e3289 - Valentina Tibollo, Mauro Bucalo, Danila Vella, Morena Stuppia, Nicola Barbarini, Riccardo Bellazzi:
Procedure to integrate i2b2 and REDCap: a case study at ICSM. e3294 - Giuseppe Agapito, Pietro Hiram Guzzi, Mario Cannataro:
GenotypeAnalytics: a RESTFul platform to mine multiple associations between SNPs and drug response in case-control studies. e3299 - Sankhanil Dey, Ranjan Ghosh:
4, 8, 32, 64 bit Substitution Box generation using Irreducible or Reducible Polynomials over Galois Field GF(pq). e3300
- Maureen Lyndel C. Lauron, Jaderick P. Pabico:
Profiling waitlisted incoming students for future delinquency with an ensemble of statistical machine learning algorithms. e3312 - Junade Ali:
Mechanism for the prevention of password reuse through Anonymized Hashes. e3322 - Silvana Iuliana Albert:
Visualizing mutation occurrence using Big Data. e3325 - Michela Quadrini, Luca Tesei, Emanuela Merelli:
An algebraic representation for tree alignment of RNA pseudoknotted structures. e3327 - Francesco Guarino, Mario Alessandro Russo, Monica Franzese, Dario Righelli, Giovanni Improta, Claudia Angelini, Maria Triassi:
A novel shiny platform for the geo-spatial analysis of large amount of patient data. e3335 - Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel:
Identifying frequent patterns in biochemical reaction networks - a workflow. e1479 - Francesco Versaci, Luca Pireddu, Gianluigi Zanetti:
Distributed stream processing for genomics pipelines. e3338 - Onofre Orozco, Carlos Eduardo Castañeda Hernández, Agustín Rodríguez-Herrero, Gema García-Sáez, María Elena Hernando:
Linear time-varying Luenberger observer applied to diabetes. e3341 - Arman Rahimzamani, Sreeram Kannan:
Potential conditional mutual information: Estimators and properties. e3345 - Fabio Fassetti, Claudia Giallombardo, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Pierluigi Ruffolo, Adolfo Saiardi:
Automatic simulation of RNA editing in plants for the identification of novel putative Open Reading Frames. e3362 - Patrick D. C. Pereira, Cleyssian Dias, Mauro A. D. Melo, Nara G. M. Magalhães, Cristovam G. Diniz, Cristovam W. Picanço-Diniz:
Seqs-Extractor: Automated sequences extraction to reduce tedious manual corrections of large datasets. e3364 - Soumya Banerjee:
A computational framework to find novel therapeutics for autoimmunity. e3217
- Udit Arora, Sohit Verma, Sarthak Sahni, Tushar Sharma:
Cricket umpire assistance and ball tracking system using a single smartphone camera. e3402 - Rohit Takhar, Tushar Sharma, Udit Arora, Sohit Verma:
Assistive guidance system for the visually impaired. e3410 - Roberto Vidmar, Nicola Creati:
QCOBJ a Python package to handle quantity-aware configuration files. e3418 - Sankhanil Dey, Ranjan Ghosh:
A review of existing 4-bit crypto S-box cryptanalysis techniques and two new techniques with 4-bit Boolean functions for cryptanalysis of 4-bit crypto S-boxes. e3441
- Daniel Alcaide, Jan Aerts:
MCLEAN: Multilevel Clustering Exploration As Network. e3448 - Alexander