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ORCIDBibTeX records: Eran Agmon
@article{DBLP:journals/ploscb/SkalnikCYWSTMPA23,
author = {Christopher J. Skalnik and
Sean Y. Cheah and
Mica Y. Yang and
Mattheus B. Wolff and
Ryan K. Spangler and
Lee Talman and
Jerry H. Morrison and
Shayn M. Peirce and
Eran Agmon and
Markus W. Covert},
title = {Whole-cell modeling of E. coli colonies enables quantification of
single-cell heterogeneity in antibiotic responses},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {6},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011232},
doi = {10.1371/JOURNAL.PCBI.1011232},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SkalnikCYWSTMPA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgmonSSPPMC22,
author = {Eran Agmon and
Ryan K. Spangler and
Christopher J. Skalnik and
William Poole and
Shayn M. Peirce and
Jerry H. Morrison and
Markus W. Covert},
title = {Vivarium: an interface and engine for integrative multiscale modeling
in computational biology},
journal = {Bioinform.},
volume = {38},
number = {7},
pages = {1972--1979},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac049},
doi = {10.1093/BIOINFORMATICS/BTAC049},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgmonSSPPMC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShaikhSVMWAAAAB22,
author = {Bilal Shaikh and
Lucian P. Smith and
Dan Vasilescu and
Gnaneswara Marupilla and
Michael Wilson and
Eran Agmon and
Henry Agnew and
Steven S. Andrews and
Azraf Anwar and
Moritz E. Beber and
Frank T. Bergmann and
David Brooks and
Lutz Brusch and
Laurence Calzone and
Kiri Choi and
Joshua Cooper and
John Detloff and
Brian Drawert and
Michel Dumontier and
G. Bard Ermentrout and
James R. Faeder and
Andrew P. Freiburger and
Fabian Fr{\"{o}}hlich and
Akira Funahashi and
Alan Garny and
John H. Gennari and
Padraig Gleeson and
Anne Goelzer and
Zachary B. Haiman and
Jan Hasenauer and
Joseph L. Hellerstein and
Henning Hermjakob and
Stefan Hoops and
Jon C. Ison and
Diego Jahn and
Henry V. Jakubowski and
Ryann Jordan and
Mat{\'{u}}s Kalas and
Matthias K{\"{o}}nig and
Wolfram Liebermeister and
Rahuman S. Malik{-}Sheriff and
Synchon Mandal and
Robert A. McDougal and
J. Kyle Medley and
Pedro Mendes and
Robert M{\"{u}}ller and
Chris J. Myers and
Aur{\'{e}}lien Naldi and
Tung V. N. Nguyen and
David P. Nickerson and
Brett G. Olivier and
Drashti Patoliya and
Lo{\"{\i}}c Paulev{\'{e}} and
Linda R. Petzold and
Ankita Priya and
Anand K. Rampadarath and
Johann M. Rohwer and
Ali Sinan Saglam and
Dilawar Singh and
Ankur Sinha and
Jacky L. Snoep and
Hugh Sorby and
Ryan K. Spangler and
J{\"{o}}rn Starru{\ss} and
Payton J. Thomas and
David D. van Niekerk and
Daniel Weindl and
Fengkai Zhang and
Anna Zhukova and
Arthur P. Goldberg and
James C. Schaff and
Michael L. Blinov and
Herbert M. Sauro and
Ion I. Moraru and
Jonathan R. Karr},
title = {BioSimulators: a central registry of simulation engines and services
for recommending specific tools},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{W1}},
pages = {108--114},
year = {2022},
url = {https://doi.org/10.1093/nar/gkac331},
doi = {10.1093/NAR/GKAC331},
timestamp = {Mon, 08 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShaikhSVMWAAAAB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-06732,
author = {Bilal Shaikh and
Lucian P. Smith and
Dan Vasilescu and
Gnaneswara Marupilla and
Michael Wilson and
Eran Agmon and
Henry Agnew and
Steven S. Andrews and
Azraf Anwar and
Moritz E. Beber and
Frank T. Bergmann and
David Brooks and
Lutz Brusch and
Laurence Calzone and
Kiri Choi and
Joshua Cooper and
John Detloff and
Brian Drawert and
Michel Dumontier and
G. Bard Ermentrout and
James R. Faeder and
Andrew P. Freiburger and
Fabian Fr{\"{o}}hlich and
Akira Funahashi and
Alan Garny and
John H. Gennari and
Padraig Gleeson and
Anne Goelzer and
Zachary B. Haiman and
Joseph L. Hellerstein and
Stefan Hoops and
Jon C. Ison and
Diego Jahn and
Henry V. Jakubowski and
Ryann Jordan and
Mat{\'{u}}s Kalas and
Matthias K{\"{o}}nig and
Wolfram Liebermeister and
Synchon Mandal and
Robert A. McDougal and
J. Kyle Medley and
Pedro Mendes and
Robert M{\"{u}}ller and
Chris J. Myers and
Aur{\'{e}}lien Naldi and
Tung V. N. Nguyen and
David P. Nickerson and
Brett G. Olivier and
Drashti Patoliya and
Lo{\"{\i}}c Paulev{\'{e}} and
Linda R. Petzold and
Ankita Priya and
Anand K. Rampadarath and
Johann M. Rohwer and
Ali Sinan Saglam and
Dilawar Singh and
Ankur Sinha and
Jacky L. Snoep and
Hugh Sorby and
Ryan K. Spangler and
J{\"{o}}rn Starru{\ss} and
Payton J. Thomas and
David D. van Niekerk and
Daniel Weindl and
Fengkai Zhang and
Anna Zhukova and
Arthur P. Goldberg and
Michael L. Blinov and
Herbert M. Sauro and
Ion I. Moraru and
Jonathan R. Karr},
title = {BioSimulators: a central registry of simulation engines and services
for recommending specific tools},
journal = {CoRR},
volume = {abs/2203.06732},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2203.06732},
doi = {10.48550/ARXIV.2203.06732},
eprinttype = {arXiv},
eprint = {2203.06732},
timestamp = {Mon, 08 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2203-06732.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/adb/Agmon20,
author = {Eran Agmon},
title = {Deriving the bodily grounding of living beings with molecular autopoiesis},
journal = {Adapt. Behav.},
volume = {28},
number = {1},
year = {2020},
url = {https://doi.org/10.1177/1059712319830645},
doi = {10.1177/1059712319830645},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/adb/Agmon20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/entropy/AgmonS20,
author = {Eran Agmon and
Ryan K. Spangler},
title = {A Multi-Scale Approach to Modeling E. coli Chemotaxis},
journal = {Entropy},
volume = {22},
number = {10},
pages = {1101},
year = {2020},
url = {https://doi.org/10.3390/e22101101},
doi = {10.3390/E22101101},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/entropy/AgmonS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/alife/AgmonEV18,
author = {Eran Agmon and
Matthew D. Egbert and
Nathaniel Virgo},
title = {The Biological Foundations of Enactivism: {A} Report on a Workshop
Held at Artificial Life {XV}},
journal = {Artif. Life},
volume = {24},
number = {1},
year = {2018},
url = {https://doi.org/10.1162/ARTL\_a\_00253},
doi = {10.1162/ARTL\_A\_00253},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/alife/AgmonEV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecal/AgmonGB17,
author = {Eran Agmon and
James A. Glazier and
Randall D. Beer},
editor = {Carole Knibbe and
Guillaume Beslon and
David P. Parsons and
Dusan Misevic and
Jonathan Rouzaud{-}Cornabas and
Nicolas Bred{\`{e}}che and
Salima Hassas and
Olivier Simonin and
H{\'{e}}di Soula},
title = {Structural coupling of a Potts model cell},
booktitle = {Proceedings of the Fourteenth European Conference Artificial Life,
{ECAL} 2017, Lyon, France, September 4-8, 2017},
pages = {13--20},
publisher = {{MIT} Press},
year = {2017},
url = {https://doi.org/10.7551/ecal\_a\_008},
doi = {10.7551/ECAL\_A\_008},
timestamp = {Thu, 07 Jul 2022 14:54:16 +0200},
biburl = {https://dblp.org/rec/conf/ecal/AgmonGB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecal/VirgoAF17,
author = {Nathaniel Virgo and
Eran Agmon and
Chrisantha Fernando},
editor = {Carole Knibbe and
Guillaume Beslon and
David P. Parsons and
Dusan Misevic and
Jonathan Rouzaud{-}Cornabas and
Nicolas Bred{\`{e}}che and
Salima Hassas and
Olivier Simonin and
H{\'{e}}di Soula},
title = {Lineage selection leads to evolvability at large population sizes},
booktitle = {Proceedings of the Fourteenth European Conference Artificial Life,
{ECAL} 2017, Lyon, France, September 4-8, 2017},
pages = {420--427},
publisher = {{MIT} Press},
year = {2017},
url = {https://doi.org/10.7551/ecal\_a\_070},
doi = {10.7551/ECAL\_A\_070},
timestamp = {Tue, 09 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecal/VirgoAF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/alife/AgmonGCB16,
author = {Eran Agmon and
Alexander J. Gates and
Valentin Churavy and
Randall D. Beer},
title = {Exploring the Space of Viable Configurations in a Model of Metabolism-Boundary
Co-construction},
journal = {Artif. Life},
volume = {22},
number = {2},
pages = {153--171},
year = {2016},
url = {https://doi.org/10.1162/ARTL\_a\_00196},
doi = {10.1162/ARTL\_A\_00196},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/alife/AgmonGCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/alife/TaylorBCABBDFHI16,
author = {Tim Taylor and
Mark A. Bedau and
Alastair Channon and
David H. Ackley and
Wolfgang Banzhaf and
Guillaume Beslon and
Emily L. Dolson and
Tom Froese and
Simon J. Hickinbotham and
Takashi Ikegami and
Barry McMullin and
Norman H. Packard and
Steen Rasmussen and
Nathaniel Virgo and
Eran Agmon and
Edward Clark and
Simon McGregor and
Charles Ofria and
Glen E. P. Ropella and
Lee Spector and
Kenneth O. Stanley and
Adam Stanton and
Christopher Steven Timperley and
Anya E. Vostinar and
Michael J. Wiser},
title = {Open-Ended Evolution: Perspectives from the {OEE} Workshop in York},
journal = {Artif. Life},
volume = {22},
number = {3},
pages = {408--423},
year = {2016},
url = {https://doi.org/10.1162/ARTL\_a\_00210},
doi = {10.1162/ARTL\_A\_00210},
timestamp = {Sun, 30 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/alife/TaylorBCABBDFHI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/alife/AgmonGB16,
author = {Eran Agmon and
Alexander J. Gates and
Randall D. Beer},
title = {The Structure of Ontogenies in a Model Protocell},
journal = {Artif. Life},
volume = {22},
number = {4},
pages = {499--517},
year = {2016},
url = {https://doi.org/10.1162/ARTL\_a\_00215},
doi = {10.1162/ARTL\_A\_00215},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/alife/AgmonGB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecal/AgmonGB15,
author = {Eran Agmon and
Alexander J. Gates and
Randall D. Beer},
editor = {Paul S. Andrews and
Leo S. D. Caves and
Ren{\'{e}} Doursat and
Simon J. Hickinbotham and
Fiona A. C. Polack and
Susan Stepney and
Tim Taylor and
Jon Timmis},
title = {Ontogeny and adaptivity in a model protocell},
booktitle = {Proceedings of the Thirteenth European Conference Artificial Life,
{ECAL} 2015, York, UK, July 20-24, 2015},
pages = {216--223},
publisher = {{MIT} Press},
year = {2015},
url = {https://doi.org/10.7551/978-0-262-33027-5-ch043},
doi = {10.7551/978-0-262-33027-5-CH043},
timestamp = {Thu, 07 Jul 2022 14:54:16 +0200},
biburl = {https://dblp.org/rec/conf/ecal/AgmonGB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/adb/AgmonB14,
author = {Eran Agmon and
Randall D. Beer},
title = {The evolution and analysis of action switching in embodied agents},
journal = {Adapt. Behav.},
volume = {22},
number = {1},
pages = {3--20},
year = {2014},
url = {https://doi.org/10.1177/1059712313511649},
doi = {10.1177/1059712313511649},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/adb/AgmonB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alife/AgmonGCB14,
author = {Eran Agmon and
Alexander J. Gates and
Valentin Churavy and
Randall D. Beer},
title = {Quantifying Robustness in a Spatial Model of Metabolism-Boundary Co-Construction},
booktitle = {Fourteenth International Conference on the Simulation and Synthesis
of Living Systems, {ALIFE} 2014, New York, NY, USA, July 30 - August
2, 2014},
pages = {514--521},
publisher = {{MIT} Press},
year = {2014},
url = {https://doi.org/10.7551/978-0-262-32621-6-ch082},
doi = {10.7551/978-0-262-32621-6-CH082},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alife/AgmonGCB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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