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ORCIDBibTeX records: Jakob L. Andersen
@inproceedings{DBLP:conf/isbra/EriksenAFM23,
author = {Casper Asbj{\o}rn Eriksen and
Jakob Lykke Andersen and
Rolf Fagerberg and
Daniel Merkle},
editor = {Xuan Guo and
Serghei Mangul and
Murray Patterson and
Alexander Zelikovsky},
title = {Reconciling Inconsistent Molecular Structures from Biochemical Databases},
booktitle = {Bioinformatics Research and Applications - 19th International Symposium,
{ISBRA} 2023, Wroc{\l}aw, Poland, October 9-12, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14248},
pages = {58--71},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-981-99-7074-2\_5},
doi = {10.1007/978-981-99-7074-2\_5},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbra/EriksenAFM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/AndersenBFFMS23,
author = {Jakob L. Andersen and
Sissel Banke and
Rolf Fagerberg and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Xuan Guo and
Serghei Mangul and
Murray Patterson and
Alexander Zelikovsky},
title = {On the Realisability of Chemical Pathways},
booktitle = {Bioinformatics Research and Applications - 19th International Symposium,
{ISBRA} 2023, Wroc{\l}aw, Poland, October 9-12, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14248},
pages = {409--419},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-981-99-7074-2\_32},
doi = {10.1007/978-981-99-7074-2\_32},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbra/AndersenBFFMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-12735,
author = {Casper Asbj{\o}rn Eriksen and
Jakob Lykke Andersen and
Rolf Fagerberg and
Daniel Merkle},
title = {Reconciling Inconsistent Molecular Structures from Biochemical Databases},
journal = {CoRR},
volume = {abs/2308.12735},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.12735},
doi = {10.48550/ARXIV.2308.12735},
eprinttype = {arXiv},
eprint = {2308.12735},
timestamp = {Fri, 25 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-12735.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-10629,
author = {Jakob L. Andersen and
Sissel Banke and
Rolf Fagerberg and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {On the Realisability of Chemical Pathways},
journal = {CoRR},
volume = {abs/2309.10629},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.10629},
doi = {10.48550/ARXIV.2309.10629},
eprinttype = {arXiv},
eprint = {2309.10629},
timestamp = {Tue, 26 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-10629.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/AndersenFFFKLMN22,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Representing Catalytic Mechanisms with Rule Composition},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {22},
pages = {5513--5524},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c00426},
doi = {10.1021/ACS.JCIM.2C00426},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/AndersenFFFKLMN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-04360,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Efficient Modular Graph Transformation Rule Application},
journal = {CoRR},
volume = {abs/2201.04360},
year = {2022},
url = {https://arxiv.org/abs/2201.04360},
eprinttype = {arXiv},
eprint = {2201.04360},
timestamp = {Thu, 20 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-04360.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-04515,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Characterizing Catalytic Mechanisms with Overlay Graphs},
journal = {CoRR},
volume = {abs/2201.04515},
year = {2022},
url = {https://arxiv.org/abs/2201.04515},
eprinttype = {arXiv},
eprint = {2201.04515},
timestamp = {Thu, 20 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-04515.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndersenFFFKLMN21,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Graph transformation for enzymatic mechanisms},
journal = {Bioinform.},
volume = {37},
number = {Supplement},
pages = {392--400},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab296},
doi = {10.1093/BIOINFORMATICS/BTAB296},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndersenFFFKLMN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BehrKAM21,
author = {Nicolas Behr and
Jean Krivine and
Jakob L. Andersen and
Daniel Merkle},
title = {Rewriting theory for the life sciences: {A} unifying theory of {CTMC}
semantics},
journal = {Theor. Comput. Sci.},
volume = {884},
pages = {68--115},
year = {2021},
url = {https://doi.org/10.1016/j.tcs.2021.07.026},
doi = {10.1016/J.TCS.2021.07.026},
timestamp = {Wed, 01 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/BehrKAM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-03292,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Graph Transformation for Enzymatic Mechanisms},
journal = {CoRR},
volume = {abs/2102.03292},
year = {2021},
url = {https://arxiv.org/abs/2102.03292},
eprinttype = {arXiv},
eprint = {2102.03292},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-03292.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-02573,
author = {Nicolas Behr and
Jean Krivine and
Jakob L. Andersen and
Daniel Merkle},
title = {Rewriting Theory for the Life Sciences: {A} Unifying Theory of {CTMC}
Semantics (Long version)},
journal = {CoRR},
volume = {abs/2106.02573},
year = {2021},
url = {https://arxiv.org/abs/2106.02573},
eprinttype = {arXiv},
eprint = {2106.02573},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-02573.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-03086,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Defining Autocatalysis in Chemical Reaction Networks},
journal = {CoRR},
volume = {abs/2107.03086},
year = {2021},
url = {https://arxiv.org/abs/2107.03086},
eprinttype = {arXiv},
eprint = {2107.03086},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-03086.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AndersenMR20,
author = {Jakob L. Andersen and
Daniel Merkle and
Peter S. Rasmussen},
title = {Combining Graph Transformations and Semigroups for Isotopic Labeling
Design},
journal = {J. Comput. Biol.},
volume = {27},
number = {2},
pages = {269--287},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0291},
doi = {10.1089/CMB.2019.0291},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AndersenMR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jea/AndersenM20,
author = {Jakob L. Andersen and
Daniel Merkle},
title = {A Generic Framework for Engineering Graph Canonization Algorithms},
journal = {{ACM} J. Exp. Algorithmics},
volume = {25},
pages = {1--26},
year = {2020},
url = {https://doi.org/10.1145/3356020},
doi = {10.1145/3356020},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jea/AndersenM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sofsem/AndersenHMNP20,
author = {Jakob Lykke Andersen and
Marc Hellmuth and
Daniel Merkle and
Nikolai N{\o}jgaard and
Marco Peressotti},
editor = {Yannis Manolopoulos and
George A. Papadopoulos and
Theodoros Tzouramanis},
title = {A Graph-Based Tool to Embed the {\(\pi\)}-Calculus into a Computational
{DPO} Framework},
booktitle = {Proceedings of the {SOFSEM} 2020 Doctoral Student Research Forum co-located
with the 46th International Conference on Current Trends in Theory
and Practice of Computer Science {(SOFSEM} 2020), Limassol, Cyprus,
January 20-24, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2568},
pages = {121--132},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2568/paper11.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:30 +0100},
biburl = {https://dblp.org/rec/conf/sofsem/AndersenHMNP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/SilvaAAWBSF20,
author = {Waldeyr Mendes Cordeiro da Silva and
Daniela P. de Andrade and
Jakob L. Andersen and
Maria Em{\'{\i}}lia Telles Walter and
Marcelo M. Brigido and
Peter F. Stadler and
Christoph Flamm},
editor = {Jo{\~{a}}o C. Setubal and
Waldeyr M. C. Silva},
title = {Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene
Synthases},
booktitle = {Advances in Bioinformatics and Computational Biology - 13th Brazilian
Symposium on Bioinformatics, {BSB} 2020, S{\~{a}}o Paulo, Brazil,
November 23-27, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12558},
pages = {247--258},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-65775-8\_23},
doi = {10.1007/978-3-030-65775-8\_23},
timestamp = {Tue, 02 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wob/SilvaAAWBSF20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AndersenFMS19,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {2},
pages = {510--523},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2017.2781724},
doi = {10.1109/TCBB.2017.2781724},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AndersenFMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/AndersenMR19,
author = {Jakob L. Andersen and
Daniel Merkle and
Peter S. Rasmussen},
editor = {Zhipeng Cai and
Pavel Skums and
Min Li},
title = {Graph Transformations, Semigroups, and Isotopic Labeling},
booktitle = {Bioinformatics Research and Applications - 15th International Symposium,
{ISBRA} 2019, Barcelona, Spain, June 3-6, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11490},
pages = {196--207},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-20242-2\_17},
doi = {10.1007/978-3-030-20242-2\_17},
timestamp = {Thu, 20 Aug 2020 15:54:47 +0200},
biburl = {https://dblp.org/rec/conf/isbra/AndersenMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-00407,
author = {Jakob Lykke Andersen and
Marc Hellmuth and
Daniel Merkle and
Nikolai N{\o}jgaard and
Marco Peressotti},
title = {A Graph-Based Tool to Embed the {\(\pi\)}-Calculus into a Computational
{DPO} Framework},
journal = {CoRR},
volume = {abs/1911.00407},
year = {2019},
url = {http://arxiv.org/abs/1911.00407},
eprinttype = {arXiv},
eprint = {1911.00407},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-00407.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alenex/AndersenM18,
author = {Jakob L. Andersen and
Daniel Merkle},
editor = {Rasmus Pagh and
Suresh Venkatasubramanian},
title = {A Generic Framework for Engineering Graph Canonization Algorithms},
booktitle = {Proceedings of the Twentieth Workshop on Algorithm Engineering and
Experiments, {ALENEX} 2018, New Orleans, LA, USA, January 7-8, 2018},
pages = {139--153},
publisher = {{SIAM}},
year = {2018},
url = {https://doi.org/10.1137/1.9781611975055.13},
doi = {10.1137/1.9781611975055.13},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alenex/AndersenM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gg/AndersenFMS17,
author = {Jakob Lykke Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Juan de Lara and
Detlef Plump},
title = {Chemical Graph Transformation with Stereo-Information},
booktitle = {Graph Transformation - 10th International Conference, {ICGT} 2017,
Held as Part of {STAF} 2017, Marburg, Germany, July 18-19, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10373},
pages = {54--69},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-61470-0\_4},
doi = {10.1007/978-3-319-61470-0\_4},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gg/AndersenFMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AndersenFMS17,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {An Intermediate Level of Abstraction for Computational Systems Chemistry},
journal = {CoRR},
volume = {abs/1701.09097},
year = {2017},
url = {http://arxiv.org/abs/1701.09097},
eprinttype = {arXiv},
eprint = {1701.09097},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AndersenFMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-08289,
author = {Jakob L. Andersen and
Daniel Merkle},
title = {A Generic Framework for Engineering Graph Canonization Algorithms},
journal = {CoRR},
volume = {abs/1711.08289},
year = {2017},
url = {http://arxiv.org/abs/1711.08289},
eprinttype = {arXiv},
eprint = {1711.08289},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1711-08289.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-02594,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows},
journal = {CoRR},
volume = {abs/1712.02594},
year = {2017},
url = {http://arxiv.org/abs/1712.02594},
eprinttype = {arXiv},
eprint = {1712.02594},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-02594.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/AndersenFMS17,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Algorithmic Cheminformatics (Dagstuhl Seminar 17452)},
journal = {Dagstuhl Reports},
volume = {7},
number = {11},
pages = {28--45},
year = {2017},
url = {https://doi.org/10.4230/DagRep.7.11.28},
doi = {10.4230/DAGREP.7.11.28},
timestamp = {Thu, 29 Mar 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/AndersenFMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Andersen16,
author = {Jakob Lykke Andersen},
title = {Analysis of Generative Chemistries},
school = {Leipzig University, Germany},
year = {2016},
url = {https://nbn-resolving.org/urn:nbn:de:bsz:15-qucosa-202723},
urn = {urn:nbn:de:bsz:15-qucosa-202723},
timestamp = {Fri, 02 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/phd/basesearch/Andersen16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gg/AndersenFMS16,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Rachid Echahed and
Mark Minas},
title = {A Software Package for Chemically Inspired Graph Transformation},
booktitle = {Graph Transformation - 9th International Conference, {ICGT} 2016,
in Memory of Hartmut Ehrig, Held as Part of {STAF} 2016, Vienna, Austria,
July 5-6, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9761},
pages = {73--88},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-40530-8\_5},
doi = {10.1007/978-3-319-40530-8\_5},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gg/AndersenFMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AndersenFMS16,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {A Software Package for Chemically Inspired Graph Transformation},
journal = {CoRR},
volume = {abs/1603.02481},
year = {2016},
url = {http://arxiv.org/abs/1603.02481},
eprinttype = {arXiv},
eprint = {1603.02481},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AndersenFMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijuc/AndersenFHM15,
author = {Jakob L. Andersen and
Christoph Flamm and
Martin M. Hanczyc and
Daniel Merkle},
title = {Towards Optimal DNA-Templated Computing},
journal = {Int. J. Unconv. Comput.},
volume = {11},
number = {3-4},
pages = {185--203},
year = {2015},
url = {http://www.oldcitypublishing.com/journals/ijuc-home/ijuc-issue-contents/ijuc-volume-11-number-3-4-2015/ijuc-11-3-4-p-185-203/},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijuc/AndersenFHM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AndersenFMS15,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Support for Eschenmoser's Glyoxylate Scenario},
journal = {CoRR},
volume = {abs/1502.07555},
year = {2015},
url = {http://arxiv.org/abs/1502.07555},
eprinttype = {arXiv},
eprint = {1502.07555},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AndersenFMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/AndersenFMS14,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Generic strategies for chemical space exploration},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {7},
number = {2/3},
pages = {225--258},
year = {2014},
url = {https://doi.org/10.1504/IJCBDD.2014.061649},
doi = {10.1504/IJCBDD.2014.061649},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/AndersenFMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alife/AndersenFHM14,
author = {Jakob L. Andersen and
Christoph Flamm and
Martin M. Hanczyc and
Daniel Merkle},
title = {Towards an Optimal DNA-Templated Molecular Assembler},
booktitle = {Fourteenth International Conference on the Simulation and Synthesis
of Living Systems, {ALIFE} 2014, New York, NY, USA, July 30 - August
2, 2014},
pages = {557--564},
publisher = {{MIT} Press},
year = {2014},
url = {https://doi.org/10.7551/978-0-262-32621-6-ch090},
doi = {10.7551/978-0-262-32621-6-CH090},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alife/AndersenFHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fmmb/AndersenFMS14,
author = {Jakob Lykke Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Fran{\c{c}}ois Fages and
Carla Piazza},
title = {50 Shades of Rule Composition - From Chemical Reactions to Higher
Levels of Abstraction},
booktitle = {Formal Methods in Macro-Biology - First International Conference,
{FMMB} 2014, Noum{\'{e}}a, New Caledonia, September 22-24, 2014.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8738},
pages = {117--135},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10398-3\_9},
doi = {10.1007/978-3-319-10398-3\_9},
timestamp = {Tue, 14 May 2019 10:00:54 +0200},
biburl = {https://dblp.org/rec/conf/fmmb/AndersenFMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/entropy/AndersenAFHMS13,
author = {Jakob L. Andersen and
Tommy Andersen and
Christoph Flamm and
Martin M. Hanczyc and
Daniel Merkle and
Peter F. Stadler},
title = {Navigating the Chemical Space of {HCN} Polymerization and Hydrolysis:
Guiding Graph Grammars by Mass Spectrometry Data},
journal = {Entropy},
volume = {15},
number = {10},
pages = {4066--4083},
year = {2013},
url = {https://doi.org/10.3390/e15104066},
doi = {10.3390/E15104066},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/entropy/AndersenAFHMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1302-4006,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Generic Strategies for Chemical Space Exploration},
journal = {CoRR},
volume = {abs/1302.4006},
year = {2013},
url = {http://arxiv.org/abs/1302.4006},
eprinttype = {arXiv},
eprint = {1302.4006},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1302-4006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1208-3153,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Inferring Chemical Reaction Patterns Using Rule Composition in Graph
Grammars},
journal = {CoRR},
volume = {abs/1208.3153},
year = {2012},
url = {http://arxiv.org/abs/1208.3153},
eprinttype = {arXiv},
eprint = {1208.3153},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1208-3153.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1110-6051,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Maximizing Output and Recognizing Autocatalysis in Chemical Reaction
Networks is NP-Complete},
journal = {CoRR},
volume = {abs/1110.6051},
year = {2011},
url = {http://arxiv.org/abs/1110.6051},
eprinttype = {arXiv},
eprint = {1110.6051},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1110-6051.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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