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ORCIDBibTeX records: Tom L. Blundell
@article{DBLP:journals/bib/BartasVBPCBSBP22,
author = {Martin Bartas and
Adriana Voln{\'{a}} and
Christopher A. Beaudoin and
Ebbe Toftgaard Poulsen and
Jir{\'{\i}} Cerven and
V{\'{a}}clav Br{\'{a}}zda and
Vladim{\'{\i}}r Spunda and
Tom L. Blundell and
Petr Pecinka},
title = {Unheeded SARS-CoV-2 proteins? {A} deep look into negative-sense {RNA}},
journal = {Briefings Bioinform.},
volume = {23},
number = {3},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac045},
doi = {10.1093/BIB/BBAC045},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BartasVBPCBSBP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/RodriguesPBA22,
author = {Carlos H. M. Rodrigues and
Douglas E. V. Pires and
Tom L. Blundell and
David B. Ascher},
title = {Structural landscapes of {PPI} interfaces},
journal = {Briefings Bioinform.},
volume = {23},
number = {4},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac165},
doi = {10.1093/BIB/BBAC165},
timestamp = {Mon, 08 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/RodriguesPBA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VaradiAABCDNNPT22,
author = {Mihaly Varadi and
Stephen Anyango and
David R. Armstrong and
John M. Berrisford and
Preeti Choudhary and
Mandar S. Deshpande and
Nurul Nadzirin and
Sreenath Nair and
Luk{\'{a}}s Pravda and
Ahsan Tanweer and
Bissan Al{-}Lazikani and
Claudia Andreini and
Geoffrey J. Barton and
David Bednar and
Karel Berka and
Tom L. Blundell and
Kelly Brock and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Jir{\'{\i}} Damborsk{\'{y}} and
Alessia David and
Sucharita Dey and
Roland L. Dunbrack Jr. and
Juan Fern{\'{a}}ndez{-}Recio and
Franca Fraternali and
Toby J. Gibson and
Manuela Helmer{-}Citterich and
David Hoksza and
Thomas A. Hopf and
David Jakubec and
Natarajan Kannan and
Radoslav Kriv{\'{a}}k and
Manjeet Kumar and
Emmanuel D. Levy and
Nir London and
Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and
Mallur Srivatsan Madhusudhan and
Debora S. Marks and
Lennart Martens and
Stuart A McGowan and
Jake E. McGreig and
Vivek Modi and
R. Gonzalo Parra and
Gerardo Pepe and
Damiano Piovesan and
Jaime Prilusky and
Valeria Putignano and
Leandro G. Radusky and
Pathmanaban Ramasamy and
Atilio O. Rausch and
Nathalie Reuter and
Luis A. Rodriguez and
Nathan J. Rollins and
Antonio Rosato and
Pawel Rubach and
Luis Serrano and
Gulzar Singh and
Petr Skoda and
Carlos Oscar S{\'{a}}nchez Sorzano and
Jan Stourac and
Joanna I. Sulkowska and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
Natalia Tichshenko and
Silvio C. E. Tosatto and
Wim F. Vranken and
Mark N. Wass and
Dandan Xue and
Daniel Zaidman and
Janet M. Thornton and
Michael J. E. Sternberg and
Christine A. Orengo and
Sameer Velankar},
title = {PDBe-KB: collaboratively defining the biological context of structural
data},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {534--542},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab988},
doi = {10.1093/NAR/GKAB988},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/VaradiAABCDNNPT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/Jamasb0MDHHHLB22,
author = {Arian R. Jamasb and
Ram{\'{o}}n Vi{\~{n}}as Torn{\'{e}} and
Eric Ma and
Yuanqi Du and
Charles Harris and
Kexin Huang and
Dominic Hall and
Pietro Li{\'{o}} and
Tom L. Blundell},
editor = {Sanmi Koyejo and
S. Mohamed and
A. Agarwal and
Danielle Belgrave and
K. Cho and
A. Oh},
title = {Graphein - a Python Library for Geometric Deep Learning and Network
Analysis on Biomolecular Structures and Interaction Networks},
booktitle = {Advances in Neural Information Processing Systems 35: Annual Conference
on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans,
LA, USA, November 28 - December 9, 2022},
year = {2022},
url = {http://papers.nips.cc/paper\_files/paper/2022/hash/ade039c1db0391106a3375bd2feb310a-Abstract-Conference.html},
timestamp = {Mon, 08 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/Jamasb0MDHHHLB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-13695,
author = {Arne Schneuing and
Yuanqi Du and
Charles Harris and
Arian R. Jamasb and
Ilia Igashov and
Weitao Du and
Tom L. Blundell and
Pietro Li{\'{o}} and
Carla Gomes and
Max Welling and
Michael M. Bronstein and
Bruno E. Correia},
title = {Structure-based Drug Design with Equivariant Diffusion Models},
journal = {CoRR},
volume = {abs/2210.13695},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.13695},
doi = {10.48550/ARXIV.2210.13695},
eprinttype = {arXiv},
eprint = {2210.13695},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-13695.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlsulamiTJBMBCV21,
author = {Ali F. Alsulami and
Sherine E. Thomas and
Arian R. Jamasb and
Christopher A. Beaudoin and
Ismail Moghul and
Bridget Bannerman and
Liviu Copoiu and
Sundeep Chaitanya Vedithi and
Pedro Torres and
Tom L. Blundell},
title = {SARS-CoV-2 3D database: understanding the coronavirus proteome and
evaluating possible drug targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {769--780},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa404},
doi = {10.1093/BIB/BBAA404},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlsulamiTJBMBCV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlsulamiTMACVB21,
author = {Ali F. Alsulami and
Pedro H. M. Torres and
Ismail Moghul and
Sheikh Mohammed Arif and
Amanda K. Chaplin and
Sundeep Chaitanya Vedithi and
Tom L. Blundell},
title = {{COSMIC} Cancer Gene Census 3D database: understanding the impacts
of mutations on cancer targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab220},
doi = {10.1093/BIB/BBAB220},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlsulamiTMACVB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GaudeletDJSRLHV21,
author = {Thomas Gaudelet and
Ben Day and
Arian R. Jamasb and
Jyothish Soman and
Cristian Regep and
Gertrude Liu and
Jeremy B. R. Hayter and
Richard Vickers and
Charles Roberts and
Jian Tang and
David Roblin and
Tom L. Blundell and
Michael M. Bronstein and
Jake P. Taylor{-}King},
title = {Utilizing graph machine learning within drug discovery and development},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab159},
doi = {10.1093/BIB/BBAB159},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/GaudeletDJSRLHV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TorresRB21,
author = {Pedro H. M. Torres and
Artur D. Rossi and
Tom L. Blundell},
title = {ProtCHOIR: a tool for proteome-scale generation of homo-oligomers},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab182},
doi = {10.1093/BIB/BBAB182},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TorresRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaldararuBK21,
author = {Octav Caldararu and
Tom L. Blundell and
Kasper P. Kepp},
title = {A base measure of precision for protein stability predictors: structural
sensitivity},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {88},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04030-w},
doi = {10.1186/S12859-021-04030-W},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaldararuBK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/CaldararuBK21,
author = {Octav Caldararu and
Tom L. Blundell and
Kasper P. Kepp},
title = {Three Simple Properties Explain Protein Stability Change upon Mutation},
journal = {J. Chem. Inf. Model.},
volume = {61},
number = {4},
pages = {1981--1988},
year = {2021},
url = {https://doi.org/10.1021/acs.jcim.1c00201},
doi = {10.1021/ACS.JCIM.1C00201},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/CaldararuBK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/CurranRSSHBMSBL20,
author = {Peter R. Curran and
Chris J. Radoux and
Mihaela D. Smilova and
Richard A. Sykes and
Alicia P. Higueruelo and
Anthony R. Bradley and
Brian D. Marsden and
David R. Spring and
Tom L. Blundell and
Andrew R. Leach and
William R. Pitt and
Jason C. Cole},
title = {Hotspots {API:} {A} Python Package for the Detection of Small Molecule
Binding Hotspots and Application to Structure-Based Drug Design},
journal = {J. Chem. Inf. Model.},
volume = {60},
number = {4},
pages = {1911--1916},
year = {2020},
url = {https://doi.org/10.1021/acs.jcim.9b00996},
doi = {10.1021/ACS.JCIM.9B00996},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/CurranRSSHBMSBL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/CaldararuMBK20,
author = {Octav Caldararu and
Rukmankesh Mehra and
Tom L. Blundell and
Kasper P. Kepp},
title = {Systematic Investigation of the Data Set Dependency of Protein Stability
Predictors},
journal = {J. Chem. Inf. Model.},
volume = {60},
number = {10},
pages = {4772--4784},
year = {2020},
url = {https://doi.org/10.1021/acs.jcim.0c00591},
doi = {10.1021/ACS.JCIM.0C00591},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/CaldararuMBK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SillitoeABBFGJK20,
author = {Ian Sillitoe and
Antonina Andreeva and
Tom L. Blundell and
Daniel W. A. Buchan and
Robert D. Finn and
Julian Gough and
David T. Jones and
Lawrence A. Kelley and
Typhaine Paysan{-}Lafosse and
Su Datt Lam and
Alexey G. Murzin and
Arun Prasad Pandurangan and
Gustavo A. Salazar and
Marcin J. Skwark and
Michael J. E. Sternberg and
Sameer Velankar and
Christine A. Orengo},
title = {Genome3D: integrating a collaborative data pipeline to expand the
depth and breadth of consensus protein structure annotation},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D314--D319},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz967},
doi = {10.1093/NAR/GKZ967},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SillitoeABBFGJK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VaradiBDNGAPAAB20,
author = {Mihaly Varadi and
John M. Berrisford and
Mandar S. Deshpande and
Sreenath Nair and
Aleksandras Gutmanas and
David R. Armstrong and
Luk{\'{a}}s Pravda and
Bissan Al{-}Lazikani and
Stephen Anyango and
Geoffrey J. Barton and
Karel Berka and
Tom L. Blundell and
Neera Borkakoti and
Jose M. Dana and
Sayoni Das and
Sucharita Dey and
Patrizio Di Micco and
Franca Fraternali and
Toby J. Gibson and
Manuela Helmer{-}Citterich and
David Hoksza and
Liang{-}Chin Huang and
Rishabh Jain and
Harry Jubb and
Christos C. Kannas and
Natarajan Kannan and
Jaroslav Koca and
Radoslav Kriv{\'{a}}k and
Manjeet Kumar and
Emmanuel D. Levy and
F{\'{a}}bio Madeira and
M. S. Madhusudhan and
Henry J. Martell and
Stuart A. MacGowan and
Jake E. McGreig and
Saqib Mir and
Abhik Mukhopadhyay and
Luca Parca and
Typhaine Paysan{-}Lafosse and
Leandro G. Radusky and
Ant{\'{o}}nio J. M. Ribeiro and
Luis Serrano and
Ian Sillitoe and
Gulzar Singh and
Petr Skoda and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
Jonathan D. Tyzack and
Alfonso Valencia and
Eloy D. Villasclaras{-}Fern{\'{a}}ndez and
Wim F. Vranken and
Mark N. Wass and
Janet M. Thornton and
Michael J. E. Sternberg and
Christine A. Orengo and
Sameer Velankar},
title = {PDBe-KB: a community-driven resource for structural and functional
annotations},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D344--D353},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz853},
doi = {10.1093/NAR/GKZ853},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VaradiBDNGAPAAB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CopoiuTABM20,
author = {Liviu Copoiu and
Pedro H. M. Torres and
David B. Ascher and
Tom L. Blundell and
Sony Malhotra},
title = {ProCarbDB: a database of carbohydrate-binding proteins},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D368--D375},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz860},
doi = {10.1093/NAR/GKZ860},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CopoiuTABM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-05716,
author = {Thomas Gaudelet and
Ben Day and
Arian R. Jamasb and
Jyothish Soman and
Cristian Regep and
Gertrude Liu and
Jeremy B. R. Hayter and
Richard Vickers and
Charles Roberts and
Jian Tang and
David Roblin and
Tom L. Blundell and
Michael M. Bronstein and
Jake P. Taylor{-}King},
title = {Utilising Graph Machine Learning within Drug Discovery and Development},
journal = {CoRR},
volume = {abs/2012.05716},
year = {2020},
url = {https://arxiv.org/abs/2012.05716},
eprinttype = {arXiv},
eprint = {2012.05716},
timestamp = {Tue, 12 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2012-05716.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SkwarkTCBFB19,
author = {Marcin J. Skwark and
Pedro Henrique Monteiro Torres and
Liviu Copoiu and
Bridget Bannerman{-}Chukualim and
R. Andres Floto and
Tom L. Blundell},
title = {Mabellini: a genome-wide database for understanding the structural
proteome and evaluating prospective antimicrobial targets of the emerging
pathogen Mycobacterium abscessus},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz113},
year = {2019},
url = {https://doi.org/10.1093/database/baz113},
doi = {10.1093/DATABASE/BAZ113},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SkwarkTCBFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MalhotraMBH17,
author = {Sony Malhotra and
Grace Mugumbate and
Tom L. Blundell and
Alicia P. Higueruelo},
title = {{TIBLE:} a web-based, freely accessible resource for small-molecule
binding data for mycobacterial species},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax041},
year = {2017},
url = {https://doi.org/10.1093/database/bax041},
doi = {10.1093/DATABASE/BAX041},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/MalhotraMBH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PanduranganOAB17,
author = {Arun Prasad Pandurangan and
Bernardo Ochoa{-}Monta{\~{n}}o and
David B. Ascher and
Tom L. Blundell},
title = {{SDM:} a server for predicting effects of mutations on protein stability},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W229--W235},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx439},
doi = {10.1093/NAR/GKX439},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PanduranganOAB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Ochoa-MontanoB17,
author = {Bernardo Ochoa{-}Monta{\~{n}}o and
Tom L. Blundell},
title = {XSuLT: a web server for structural annotation and representation of
sequence-structure alignments},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W381--W387},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx421},
doi = {10.1093/NAR/GKX421},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Ochoa-MontanoB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MetriHRAROHSCBS15,
author = {Rahul Metri and
Sridhar Hariharaputran and
Gayatri Ramakrishnan and
Praveen Anand and
Upadhyayula S. Raghavender and
Bernardo Ochoa{-}Monta{\~{n}}o and
Alicia P. Higueruelo and
Ramanathan Sowdhamini and
Nagasuma R. Chandra and
Tom L. Blundell and
Narayanaswamy Srinivasan},
title = {SInCRe - structural interactome computational resource for \emph{Mycobacterium
tuberculosis}},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav060},
doi = {10.1093/DATABASE/BAV060},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/MetriHRAROHSCBS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Ochoa-MontanoMB15,
author = {Bernardo Ochoa{-}Monta{\~{n}}o and
Nishita Mohan and
Tom L. Blundell},
title = {{CHOPIN:} a web resource for the structural and functional proteome
of \emph{Mycobacterium tuberculosis}},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav026},
doi = {10.1093/DATABASE/BAV026},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Ochoa-MontanoMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LewisSABBCCDFGJKKMMMOOPRSSVO15,
author = {Tony E. Lewis and
Ian Sillitoe and
Antonina Andreeva and
Tom L. Blundell and
Daniel W. A. Buchan and
Cyrus Chothia and
Domenico Cozzetto and
Jose M. Dana and
Ioannis Filippis and
Julian Gough and
David T. Jones and
Lawrence A. Kelley and
Gerard J. Kleywegt and
Federico Minneci and
Jaina Mistry and
Alexey G. Murzin and
Bernardo Ochoa{-}Monta{\~{n}}o and
Matt E. Oates and
Marco Punta and
Owen J. L. Rackham and
Jonathan Stahlhacke and
Michael J. E. Sternberg and
Sameer Velankar and
Christine A. Orengo},
title = {Genome3D: exploiting structure to help users understand their sequences},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {382--386},
year = {2015},
url = {https://doi.org/10.1093/nar/gku973},
doi = {10.1093/NAR/GKU973},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LewisSABBCCDFGJKKMMMOOPRSSVO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiresBA15,
author = {Douglas E. V. Pires and
Tom L. Blundell and
David B. Ascher},
title = {Platinum: a database of experimentally measured effects of mutations
on structurally defined protein-ligand complexes},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {387--391},
year = {2015},
url = {https://doi.org/10.1093/nar/gku966},
doi = {10.1093/NAR/GKU966},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiresBA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiresAB14,
author = {Douglas E. V. Pires and
David B. Ascher and
Tom L. Blundell},
title = {mCSM: predicting the effects of mutations in proteins using graph-based
signatures},
journal = {Bioinform.},
volume = {30},
number = {3},
pages = {335--342},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt691},
doi = {10.1093/BIOINFORMATICS/BTT691},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiresAB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PittMB14,
author = {William R. Pitt and
Rinaldo W. Montalv{\~{a}}o and
Tom L. Blundell},
title = {Polyphony: superposition independent methods for ensemble-based drug
discovery},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {324},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-324},
doi = {10.1186/1471-2105-15-324},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PittMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BallesterSB14,
author = {Pedro J. Ballester and
Adrian Schreyer and
Tom L. Blundell},
title = {Does a More Precise Chemical Description of Protein-Ligand Complexes
Lead to More Accurate Prediction of Binding Affinity?},
journal = {J. Chem. Inf. Model.},
volume = {54},
number = {3},
pages = {944--955},
year = {2014},
url = {https://doi.org/10.1021/ci500091r},
doi = {10.1021/CI500091R},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/BallesterSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiresAB14,
author = {Douglas E. V. Pires and
David B. Ascher and
Tom L. Blundell},
title = {{DUET:} a server for predicting effects of mutations on protein stability
using an integrated computational approach},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {314--319},
year = {2014},
url = {https://doi.org/10.1093/nar/gku411},
doi = {10.1093/NAR/GKU411},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiresAB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HiguerueloJB13,
author = {Alicia P. Higueruelo and
Harry Jubb and
Tom L. Blundell},
title = {{TIMBAL} v2: update of a database holding small molecules modulating
protein-protein interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat039},
doi = {10.1093/DATABASE/BAT039},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HiguerueloJB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SchreyerB13,
author = {Adrian Schreyer and
Tom L. Blundell},
title = {{CREDO:} a structural interactomics database for drug discovery},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat049},
doi = {10.1093/DATABASE/BAT049},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SchreyerB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13,
author = {Tony E. Lewis and
Ian Sillitoe and
Antonina Andreeva and
Tom L. Blundell and
Daniel W. A. Buchan and
Cyrus Chothia and
Alison L. Cuff and
Jose M. Dana and
Ioannis Filippis and
Julian Gough and
Sarah Hunter and
David T. Jones and
Lawrence A. Kelley and
Gerard J. Kleywegt and
Federico Minneci and
Alex L. Mitchell and
Alexey G. Murzin and
Bernardo Ochoa{-}Monta{\~{n}}o and
Owen J. L. Rackham and
James Smith and
Michael J. E. Sternberg and
Sameer Velankar and
Corin Yeats and
Christine A. Orengo},
title = {Genome3D: a {UK} collaborative project to annotate genomic sequences
with predicted 3D structures based on {SCOP} and {CATH} domains},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {499--507},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1266},
doi = {10.1093/NAR/GKS1266},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/SchreyerB12,
author = {Adrian Schreyer and
Tom L. Blundell},
title = {{USRCAT:} real-time ultrafast shape recognition with pharmacophoric
constraints},
journal = {J. Cheminformatics},
volume = {4},
pages = {27},
year = {2012},
url = {https://doi.org/10.1186/1758-2946-4-27},
doi = {10.1186/1758-2946-4-27},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/SchreyerB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BickertonHB11,
author = {George R. Bickerton and
Alicia P. Higueruelo and
Tom L. Blundell},
title = {Comprehensive, atomic-level characterization of structurally characterized
protein-protein interactions: the {PICCOLO} database},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {313},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-313},
doi = {10.1186/1471-2105-12-313},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BickertonHB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WorthPB11,
author = {Catherine L. Worth and
Robert Preissner and
Tom L. Blundell},
title = {{SDM} - a server for predicting effects of mutations on protein stability
and malfunction},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Web-Server-Issue},
pages = {215--222},
year = {2011},
url = {https://doi.org/10.1093/nar/gkr363},
doi = {10.1093/NAR/GKR363},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WorthPB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeB09,
author = {Semin Lee and
Tom L. Blundell},
title = {{BIPA:} a database for protein-nucleic acid interaction in 3D structures},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1559--1560},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp243},
doi = {10.1093/BIOINFORMATICS/BTP243},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeB09a,
author = {Semin Lee and
Tom L. Blundell},
title = {Ulla: a program for calculating environment-specific amino acid substitution
tables},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1976--1977},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp300},
doi = {10.1093/BIOINFORMATICS/BTP300},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeB09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengBF08,
author = {Tammy M. K. Cheng and
Tom L. Blundell and
Juan Fern{\'{a}}ndez{-}Recio},
title = {Structural assembly of two-domain proteins by rigid-body docking},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-441},
doi = {10.1186/1471-2105-9-441},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengBF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChengLVLB08,
author = {Tammy M. K. Cheng and
Yu{-}En Lu and
Michele Vendruscolo and
Pietro Li{\`{o}} and
Tom L. Blundell},
title = {Prediction by Graph Theoretic Measures of Structural Effects in Proteins
Arising from Non-Synonymous Single Nucleotide Polymorphisms},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {7},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000135},
doi = {10.1371/JOURNAL.PCBI.1000135},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChengLVLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GongB08,
author = {Sungsam Gong and
Tom L. Blundell},
title = {Discarding Functional Residues from the Substitution Table Improves
Predictions of Active Sites within Three-Dimensional Structures},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {10},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000179},
doi = {10.1371/JOURNAL.PCBI.1000179},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GongB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithLBMB07,
author = {Richard E. Smith and
Simon C. Lovell and
David F. Burke and
Rinaldo W. Montalv{\~{a}}o and
Tom L. Blundell},
title = {Andante: reducing side-chain rotamer search space during comparative
modeling using environment-specific substitution probabilities},
journal = {Bioinform.},
volume = {23},
number = {9},
pages = {1099--1105},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm073},
doi = {10.1093/BIOINFORMATICS/BTM073},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithLBMB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BurkeWPCSTB07,
author = {David F. Burke and
Catherine L. Worth and
Eva{-}Maria Priego and
Tammy M. K. Cheng and
Luc J. Smink and
John A. Todd and
Tom L. Blundell},
title = {Genome bioinformatic analysis of nonsynonymous SNPs},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-301},
doi = {10.1186/1471-2105-8-301},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BurkeWPCSTB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/WorthBSFCLGBB07,
author = {Catherine L. Worth and
G. Richard J. Bickerton and
Adrian Schreyer and
Julia R. Forman and
Tammy M. K. Cheng and
Semin Lee and
Sungsam Gong and
David F. Burke and
Tom L. Blundell},
title = {A Structural Bioinformatics Approach to the Analysis of nonsynonymous
Single nucleotide polymorphisms (nsSNPS) and their Relation to Disease},
journal = {J. Bioinform. Comput. Biol.},
volume = {5},
number = {6},
pages = {1297--1318},
year = {2007},
url = {https://doi.org/10.1142/S0219720007003120},
doi = {10.1142/S0219720007003120},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/WorthBSFCLGBB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoreBB05,
author = {Swanand P. Gore and
David F. Burke and
Tom L. Blundell},
title = {{PROVAT:} a tool for Voronoi tessellation analysis of protein structures
and complexes},
journal = {Bioinform.},
volume = {21},
number = {15},
pages = {3316--3317},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti523},
doi = {10.1093/BIOINFORMATICS/BTI523},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoreBB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MontalvaoSLB05,
author = {Rinaldo W. Montalv{\~{a}}o and
Richard E. Smith and
Simon C. Lovell and
Tom L. Blundell},
title = {{CHORAL:} a differential geometry approach to the prediction of the
cores of protein structures},
journal = {Bioinform.},
volume = {21},
number = {19},
pages = {3719--3725},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti595},
doi = {10.1093/BIOINFORMATICS/BTI595},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MontalvaoSLB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GoreBB05,
author = {Swanand P. Gore and
David F. Burke and
Tom L. Blundell},
title = {{PROVAT} - a versatile tool for Voronoi tessellation analysis of protein
structures and complexes},
journal = {{BMC} Bioinform.},
volume = {6},
number = {{S-3}},
year = {2005},
url = {http://www.biomedcentral.com/1471-2105/6/S3/P12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GoreBB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VinayagamSPMBS03,
author = {A. Vinayagam and
Jiye Shi and
Ganesan Pugalenthi and
B. Meenakshi and
Tom L. Blundell and
Ramanathan Sowdhamini},
title = {{DDBASE2.0:} updated domain database with improved identification
of structural domains},
journal = {Bioinform.},
volume = {19},
number = {14},
pages = {1760--1764},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg233},
doi = {10.1093/BIOINFORMATICS/BTG233},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VinayagamSPMBS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeaneKB01,
author = {Charlotte M. Deane and
Quentin Kaas and
Tom L. Blundell},
title = {{SCORE:} predicting the core of protein models},
journal = {Bioinform.},
volume = {17},
number = {6},
pages = {541--550},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.6.541},
doi = {10.1093/BIOINFORMATICS/17.6.541},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeaneKB01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakkerBBMMSSB01,
author = {Paul I. W. de Bakker and
Alex Bateman and
David F. Burke and
Ricardo N{\'{u}}{\~{n}}ez Miguel and
Kenji Mizuguchi and
Jiye Shi and
Hiroki Shirai and
Tom L. Blundell},
title = {{HOMSTRAD:} adding sequence information to structure-based alignments
of homologous protein families},
journal = {Bioinform.},
volume = {17},
number = {8},
pages = {748--749},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.8.748},
doi = {10.1093/BIOINFORMATICS/17.8.748},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakkerBBMMSSB01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurkeDB00,
author = {David F. Burke and
Charlotte M. Deane and
Tom L. Blundell},
title = {Browsing the SLoop database of structurally classified loops connecting
elements of protein secondary structure},
journal = {Bioinform.},
volume = {16},
number = {6},
pages = {513--519},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.6.513},
doi = {10.1093/BIOINFORMATICS/16.6.513},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BurkeDB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MizuguchiB00,
author = {Kenji Mizuguchi and
Tom L. Blundell},
title = {Analysis of conservation and substitutions of secondary structure
elements within protein superfamilies},
journal = {Bioinform.},
volume = {16},
number = {12},
pages = {1111--1119},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.12.1111},
doi = {10.1093/BIOINFORMATICS/16.12.1111},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MizuguchiB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MizuguchiDBJO98,
author = {Kenji Mizuguchi and
Charlotte M. Deane and
Tom L. Blundell and
Mark S. Johnson and
John P. Overington},
title = {{JOY:} protein sequence-structure representation and analysis},
journal = {Bioinform.},
volume = {14},
number = {7},
pages = {617--623},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.7.617},
doi = {10.1093/BIOINFORMATICS/14.7.617},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MizuguchiDBJO98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/SunB95,
author = {Zhirong Sun and
Tom L. Blundell},
title = {The pattern of common supersecondary structure (motifs) in protein
database},
booktitle = {28th Annual Hawaii International Conference on System Sciences (HICSS-28),
January 3-6, 1995, Kihei, Maui, Hawaii, {USA}},
pages = {312--318},
publisher = {{IEEE} Computer Society},
year = {1995},
url = {https://doi.org/10.1109/HICSS.1995.375325},
doi = {10.1109/HICSS.1995.375325},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/SunB95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RufinoB94,
author = {Stephen D. Rufino and
Tom L. Blundell},
title = {Structure-based identification and clustering of protein families
and superfamilies},
journal = {J. Comput. Aided Mol. Des.},
volume = {8},
number = {1},
pages = {5--27},
year = {1994},
url = {https://doi.org/10.1007/BF00124346},
doi = {10.1007/BF00124346},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/RufinoB94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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