BibTeX records: Michal Brylinski

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@inproceedings{DBLP:conf/comsnets/MukhopadhyayBBB22,
  author       = {Supratik Mukhopadhyay and
                  Michal Brylinski and
                  Adam Bess and
                  Frej Berglind and
                  Chris Galliano and
                  Patrick F. McGrew},
  title        = {DeepDrug: Applying {AI} for the Advancement of Drug Discovery},
  booktitle    = {14th International Conference on COMmunication Systems {\&} NETworkS,
                  {COMSNETS} 2022, Bangalore, India, January 4-8, 2022},
  pages        = {667--674},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.1109/COMSNETS53615.2022.9668586},
  doi          = {10.1109/COMSNETS53615.2022.9668586},
  timestamp    = {Tue, 25 Jan 2022 16:35:12 +0100},
  biburl       = {https://dblp.org/rec/conf/comsnets/MukhopadhyayBBB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/LiuSPNFWRB21,
  author       = {Guannan Liu and
                  Manali Singha and
                  Limeng Pu and
                  Prasanga Neupane and
                  Joseph Feinstein and
                  Hsiao{-}Chun Wu and
                  J. Ramanujam and
                  Michal Brylinski},
  title        = {GraphDTI: {A} robust deep learning predictor of drug-target interactions
                  from multiple heterogeneous data},
  journal      = {J. Cheminformatics},
  volume       = {13},
  number       = {1},
  pages        = {58},
  year         = {2021},
  url          = {https://doi.org/10.1186/s13321-021-00540-0},
  doi          = {10.1186/S13321-021-00540-0},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcheminf/LiuSPNFWRB21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiLSSPYRB20,
  author       = {Wentao Shi and
                  Jeffrey Mitchell Lemoine and
                  Abd{-}El{-}Monsif A. Shawky and
                  Manali Singha and
                  Limeng Pu and
                  Shuangyan Yang and
                  J. Ramanujam and
                  Michal Brylinski},
  title        = {BionoiNet: ligand-binding site classification with off-the-shelf deep
                  neural network},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {10},
  pages        = {3077--3083},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa094},
  doi          = {10.1093/BIOINFORMATICS/BTAA094},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShiLSSPYRB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NaderiLGKFB19,
  author       = {Misagh Naderi and
                  Jeffrey Mitchell Lemoine and
                  Rajiv Gandhi Govindaraj and
                  Omar Kana and
                  Wei Pan Feinstein and
                  Michal Brylinski},
  title        = {Binding site matching in rational drug design: algorithms and applications},
  journal      = {Briefings Bioinform.},
  volume       = {20},
  number       = {6},
  pages        = {2167--2184},
  year         = {2019},
  url          = {https://doi.org/10.1093/bib/bby078},
  doi          = {10.1093/BIB/BBY078},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/NaderiLGKFB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KanaB19,
  author       = {Omar Kana and
                  Michal Brylinski},
  title        = {Elucidating the druggability of the human proteome with eFindSite},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {33},
  number       = {5},
  pages        = {509--519},
  year         = {2019},
  url          = {https://doi.org/10.1007/s10822-019-00197-w},
  doi          = {10.1007/S10822-019-00197-W},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/KanaB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PuGLWB19,
  author       = {Limeng Pu and
                  Rajiv Gandhi Govindaraj and
                  Jeffrey Mitchell Lemoine and
                  Hsiao{-}Chun Wu and
                  Michal Brylinski},
  title        = {DeepDrug3D: Classification of ligand-binding pockets in proteins with
                  a convolutional neural network},
  journal      = {PLoS Comput. Biol.},
  volume       = {15},
  number       = {2},
  year         = {2019},
  url          = {https://doi.org/10.1371/journal.pcbi.1006718},
  doi          = {10.1371/JOURNAL.PCBI.1006718},
  timestamp    = {Sat, 25 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/PuGLWB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/AbeysingheBCMP19,
  author       = {Eroma Abeysinghe and
                  Michal Brylinski and
                  Marcus Christie and
                  Suresh Marru and
                  Marlon E. Pierce},
  editor       = {Thomas R. Furlani},
  title        = {{LSU} Computational System Biology Gateway for Education},
  booktitle    = {Proceedings of the Practice and Experience in Advanced Research Computing
                  on Rise of the Machines (learning), {PEARC} 2019, Chicago, IL, USA,
                  July 28 - August 01, 2019},
  pages        = {112:1--112:4},
  publisher    = {{ACM}},
  year         = {2019},
  url          = {https://doi.org/10.1145/3332186.3333259},
  doi          = {10.1145/3332186.3333259},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/xsede/AbeysingheBCMP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GovindarajB18,
  author       = {Rajiv Gandhi Govindaraj and
                  Michal Brylinski},
  title        = {Comparative assessment of strategies to identify similar ligand-binding
                  pockets in proteins},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {91:1--91:17},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2109-2},
  doi          = {10.1186/S12859-018-2109-2},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GovindarajB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/AbeysingheBCMP18,
  author       = {Eroma Abeysinghe and
                  Michal Brylinski and
                  Marcus Christie and
                  Suresh Marru and
                  Marlon E. Pierce},
  editor       = {Sergiu Sanielevici},
  title        = {The {CSBG} - {LSU} Gateway: Web based Hosted Gateway for Computational
                  System Biology Application Tools from Louisiana State University},
  booktitle    = {Proceedings of the Practice and Experience on Advanced Research Computing,
                  {PEARC} 2018, Pittsburgh, PA, USA, July 22-26, 2018},
  pages        = {100:1--100:4},
  publisher    = {{ACM}},
  year         = {2018},
  url          = {https://doi.org/10.1145/3219104.3229245},
  doi          = {10.1145/3219104.3229245},
  timestamp    = {Wed, 25 Sep 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/xsede/AbeysingheBCMP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaheshwariB17,
  author       = {Surabhi Maheshwari and
                  Michal Brylinski},
  title        = {Across-proteome modeling of dimer structures for the bottom-up assembly
                  of protein-protein interaction networks},
  journal      = {{BMC} Bioinform.},
  volume       = {18},
  number       = {1},
  pages        = {257:1--257:14},
  year         = {2017},
  url          = {https://doi.org/10.1186/s12859-017-1675-z},
  doi          = {10.1186/S12859-017-1675-Z},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MaheshwariB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiuNAMB17,
  author       = {Tairan Liu and
                  Misagh Naderi and
                  Chris Alvin and
                  Supratik Mukhopadhyay and
                  Michal Brylinski},
  title        = {Break Down in Order To Build Up: Decomposing Small Molecules for Fragment-Based
                  Drug Design with \emph{e}MolFrag},
  journal      = {J. Chem. Inf. Model.},
  volume       = {57},
  number       = {4},
  pages        = {627--631},
  year         = {2017},
  url          = {https://doi.org/10.1021/acs.jcim.6b00596},
  doi          = {10.1021/ACS.JCIM.6B00596},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/LiuNAMB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangHWBXK16,
  author       = {Chen Wang and
                  Gang Hu and
                  Kui Wang and
                  Michal Brylinski and
                  Lei Xie and
                  Lukasz A. Kurgan},
  title        = {{PDID:} database of molecular-level putative protein-drug interactions
                  in the structural human proteome},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {4},
  pages        = {579--586},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv597},
  doi          = {10.1093/BIOINFORMATICS/BTV597},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangHWBXK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/DingFMRJB16,
  author       = {Yun Ding and
                  Ye Fang and
                  Juana Moreno and
                  J. Ramanujam and
                  Mark Jarrell and
                  Michal Brylinski},
  title        = {Assessing the similarity of ligand binding conformations with the
                  Contact Mode Score},
  journal      = {Comput. Biol. Chem.},
  volume       = {64},
  pages        = {403--413},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.compbiolchem.2016.08.007},
  doi          = {10.1016/J.COMPBIOLCHEM.2016.08.007},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/DingFMRJB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/NaderiADMB16,
  author       = {Misagh Naderi and
                  Chris Alvin and
                  Yun Ding and
                  Supratik Mukhopadhyay and
                  Michal Brylinski},
  title        = {A graph-based approach to construct target-focused libraries for virtual
                  screening},
  journal      = {J. Cheminformatics},
  volume       = {8},
  number       = {1},
  pages        = {14:1--14:16},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13321-016-0126-6},
  doi          = {10.1186/S13321-016-0126-6},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcheminf/NaderiADMB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bams/Brylinski15,
  author       = {Michal Brylinski},
  title        = {Is the growth rate of Protein Data Bank sufficient to solve the protein
                  structure prediction problem using template-based modeling?},
  journal      = {Bio Algorithms Med Syst.},
  volume       = {11},
  number       = {1},
  pages        = {1--7},
  year         = {2015},
  url          = {https://doi.org/10.1515/bams-2014-0024},
  doi          = {10.1515/BAMS-2014-0024},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bams/Brylinski15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MaheshwariB15,
  author       = {Surabhi Maheshwari and
                  Michal Brylinski},
  title        = {Predicting protein interface residues using easily accessible on-line
                  resources},
  journal      = {Briefings Bioinform.},
  volume       = {16},
  number       = {6},
  pages        = {1025--1034},
  year         = {2015},
  url          = {https://doi.org/10.1093/bib/bbv009},
  doi          = {10.1093/BIB/BBV009},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MaheshwariB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/DingFFRKMBJ15,
  author       = {Yun Ding and
                  Ye Fang and
                  Wei Pan Feinstein and
                  Jagannathan Ramanujam and
                  David M. Koppelman and
                  Juana Moreno and
                  Michal Brylinski and
                  Mark Jarrell},
  title        = {GeauxDock: {A} novel approach for mixed-resolution ligand docking
                  using a descriptor-based force field},
  journal      = {J. Comput. Chem.},
  volume       = {36},
  number       = {27},
  pages        = {2013--2026},
  year         = {2015},
  url          = {https://doi.org/10.1002/jcc.24031},
  doi          = {10.1002/JCC.24031},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/DingFFRKMBJ15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/FeinsteinB15,
  author       = {Wei Pan Feinstein and
                  Michal Brylinski},
  title        = {Calculating an optimal box size for ligand docking and virtual screening
                  against experimental and predicted binding pockets},
  journal      = {J. Cheminformatics},
  volume       = {7},
  pages        = {18:1--18:10},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13321-015-0067-5},
  doi          = {10.1186/S13321-015-0067-5},
  timestamp    = {Fri, 07 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcheminf/FeinsteinB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Brylinski14,
  author       = {Michal Brylinski},
  title        = {\emph{e}MatchSite: Sequence Order-Independent Structure Alignments
                  of Ligand Binding Pockets in Protein Models},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {9},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003829},
  doi          = {10.1371/JOURNAL.PCBI.1003829},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/Brylinski14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BrylinskiF13,
  author       = {Michal Brylinski and
                  Wei Pan Feinstein},
  title        = {eFindSite: Improved prediction of ligand binding sites in protein
                  models using meta-threading, machine learning and auxiliary ligands},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {27},
  number       = {6},
  pages        = {551--567},
  year         = {2013},
  url          = {https://doi.org/10.1007/s10822-013-9663-5},
  doi          = {10.1007/S10822-013-9663-5},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BrylinskiF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/Brylinski13,
  author       = {Michal Brylinski},
  title        = {Nonlinear Scoring Functions for Similarity-Based Ligand Docking and
                  Binding Affinity Prediction},
  journal      = {J. Chem. Inf. Model.},
  volume       = {53},
  number       = {11},
  pages        = {3097--3112},
  year         = {2013},
  url          = {https://doi.org/10.1021/ci400510e},
  doi          = {10.1021/CI400510E},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/Brylinski13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanditBZGAS10,
  author       = {Shashi Bhushan Pandit and
                  Michal Brylinski and
                  Hongyi Zhou and
                  Mu Gao and
                  Adrian K. Arakaki and
                  Jeffrey Skolnick},
  title        = {PSiFR: an integrated resource for prediction of protein structure
                  and function},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {5},
  pages        = {687--688},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq006},
  doi          = {10.1093/BIOINFORMATICS/BTQ006},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PanditBZGAS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/BrylinskiS10,
  author       = {Michal Brylinski and
                  Jeffrey Skolnick},
  title        = {Q-Dock\({}^{\mbox{LHM}}\): Low-resolution refinement for ligand comparative
                  modeling},
  journal      = {J. Comput. Chem.},
  volume       = {31},
  number       = {5},
  pages        = {1093--1105},
  year         = {2010},
  url          = {https://doi.org/10.1002/jcc.21395},
  doi          = {10.1002/JCC.21395},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/BrylinskiS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BrylinskiS10,
  author       = {Michal Brylinski and
                  Jeffrey Skolnick},
  title        = {Comprehensive Structural and Functional Characterization of the Human
                  Kinome by Protein Structure Modeling and Ligand Virtual Screening},
  journal      = {J. Chem. Inf. Model.},
  volume       = {50},
  number       = {10},
  pages        = {1839--1854},
  year         = {2010},
  url          = {https://doi.org/10.1021/ci100235n},
  doi          = {10.1021/CI100235N},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/BrylinskiS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SkolnickB09,
  author       = {Jeffrey Skolnick and
                  Michal Brylinski},
  title        = {{FINDSITE:} a combined evolution/structure-based approach to protein
                  function prediction},
  journal      = {Briefings Bioinform.},
  volume       = {10},
  number       = {4},
  pages        = {378--391},
  year         = {2009},
  url          = {https://doi.org/10.1093/bib/bbp017},
  doi          = {10.1093/BIB/BBP017},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SkolnickB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BrylinskiS09,
  author       = {Michal Brylinski and
                  Jeffrey Skolnick},
  title        = {FINDSITE\({}^{\mbox{LHM}}\): {A} Threading-Based Approach to Ligand
                  Homology Modeling},
  journal      = {PLoS Comput. Biol.},
  volume       = {5},
  number       = {6},
  year         = {2009},
  url          = {https://doi.org/10.1371/journal.pcbi.1000405},
  doi          = {10.1371/JOURNAL.PCBI.1000405},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/BrylinskiS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/BrylinskiS08,
  author       = {Michal Brylinski and
                  Jeffrey Skolnick},
  title        = {Q-Dock: Low-resolution flexible ligand docking with pocket-specific
                  threading restraints},
  journal      = {J. Comput. Chem.},
  volume       = {29},
  number       = {10},
  pages        = {1574--1588},
  year         = {2008},
  url          = {https://doi.org/10.1002/jcc.20917},
  doi          = {10.1002/JCC.20917},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/BrylinskiS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/BrylinskiKR07,
  author       = {Michal Brylinski and
                  Leszek Konieczny and
                  Irena Roterman},
  title        = {Is the protein folding an aim-oriented process? Human haemoglobin
                  as example},
  journal      = {Int. J. Bioinform. Res. Appl.},
  volume       = {3},
  number       = {2},
  pages        = {234--260},
  year         = {2007},
  url          = {https://doi.org/10.1504/IJBRA.2007.013605},
  doi          = {10.1504/IJBRA.2007.013605},
  timestamp    = {Fri, 11 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijbra/BrylinskiKR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BrylinskiPJKSKR07,
  author       = {Michal Brylinski and
                  Katarzyna Prymula and
                  Wiktor Jurkowski and
                  Marek Kochanczyk and
                  Ewa Stawowczyk and
                  Leszek Konieczny and
                  Irena Roterman},
  title        = {Prediction of Functional Sites Based on the Fuzzy Oil Drop Model},
  journal      = {PLoS Comput. Biol.},
  volume       = {3},
  number       = {5},
  year         = {2007},
  url          = {https://doi.org/10.1371/journal.pcbi.0030094},
  doi          = {10.1371/JOURNAL.PCBI.0030094},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/BrylinskiPJKSKR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/BrylinskiKR06,
  author       = {Michal Brylinski and
                  Leszek Konieczny and
                  Irena Roterman},
  title        = {Hydrophobic collapse in (\emph{in silico}) protein folding},
  journal      = {Comput. Biol. Chem.},
  volume       = {30},
  number       = {4},
  pages        = {255--267},
  year         = {2006},
  url          = {https://doi.org/10.1016/j.compbiolchem.2006.04.007},
  doi          = {10.1016/J.COMPBIOLCHEM.2006.04.007},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/candc/BrylinskiKR06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KoniecznyBR06,
  author       = {Leszek Konieczny and
                  Michal Brylinski and
                  Irena Roterman},
  title        = {Gauss-Function-Based Model of Hydrophobicity Density in Proteins},
  journal      = {Silico Biol.},
  volume       = {6},
  number       = {1-2},
  pages        = {15--22},
  year         = {2006},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00217},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/KoniecznyBR06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/BrylinskiKKR06,
  author       = {Michal Brylinski and
                  Marek Kochanczyk and
                  Leszek Konieczny and
                  Irena Roterman},
  title        = {Sequence-Structure-Function Relation Characterized in silico},
  journal      = {Silico Biol.},
  volume       = {6},
  number       = {6},
  pages        = {589--600},
  year         = {2006},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00267},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/BrylinskiKKR06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrylinskiJKR04,
  author       = {Michal Brylinski and
                  Wiktor Jurkowski and
                  Leszek Konieczny and
                  Irena Roterman},
  title        = {Limited conformational space for early-stage protein folding simulation},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {2},
  pages        = {199--205},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/btg391},
  doi          = {10.1093/BIOINFORMATICS/BTG391},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BrylinskiJKR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/BrylinskiKR04,
  author       = {Michal Brylinski and
                  Leszek Konieczny and
                  Irena Roterman},
  title        = {{SPI} - Structure predictability index for protein sequences},
  journal      = {Silico Biol.},
  volume       = {5},
  number       = {3},
  pages        = {227--237},
  year         = {2004},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00182},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/BrylinskiKR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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