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BibTeX records: J. Michael Cherry
@article{DBLP:journals/corr/abs-2305-00006, author = {Meenakshi S. Kagda and Bonita Lam and Casey Litton and Corinn Small and Cricket A. Sloan and Emma Spragins and Forrest Tanaka and Ian Whaling and Idan Gabdank and Ingrid Youngworth and J. Seth Strattan and Jason A. Hilton and Jennifer Jou and Jessica Au and Jin{-}Wook Lee and Kalina Andreeva and Keenan Graham and Khine Lin and Matt Simison and Otto Jolanki and Paul Sud and Pedro Assis and Philip Adenekan and Eric Douglass and Mingjie Li and Stuart R. Miyasato and Weiwei Zhong and Yunhai Luo and Zachary Myers and J. Michael Cherry and Benjamin C. Hitz}, title = {Data navigation on the {ENCODE} portal}, journal = {CoRR}, volume = {abs/2305.00006}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2305.00006}, doi = {10.48550/ARXIV.2305.00006}, eprinttype = {arXiv}, eprint = {2305.00006}, timestamp = {Tue, 09 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2305-00006.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CarbonDGUHMBCDH21, author = {Seth Carbon and Eric Douglass and Benjamin M. Good and Deepak R. Unni and Nomi L. Harris and Christopher J. Mungall and Siddartha Basu and Rex L. Chisholm and Robert J. Dodson and Eric Hartline and Petra Fey and Paul D. Thomas and Laurent{-}Philippe Albou and Dustin Ebert and Michael J. Kesling and Huaiyu Mi and Anushya Muruganujan and Xiaosong Huang and Tremayne Mushayahama and Sandra A. LaBonte and Deborah A. Siegele and Giulia Antonazzo and Helen Attrill and Nick H. Brown and Phani V. Garapati and Steven J. Marygold and Vitor Trovisco and Gilberto dos Santos and Kathleen Falls and Christopher J. Tabone and Pinglei Zhou and Joshua L. Goodman and Victor B. Strelets and Jim Thurmond and Penelope Garmiri and Rizwan Ishtiaq and Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and Marcio Luis Acencio and Martin Kuiper and Astrid L{\ae}greid and Colin Logie and Ruth C. Lovering and Barbara Kramarz and Shirin C. C. Saverimuttu and Sandra M. Pinheiro and Heather Gunn and Renzhi Su and Katherine E. Thurlow and Marcus C. Chibucos and Michelle G. Giglio and Suvarna Nadendla and James B. Munro and Rebecca C. Jackson and Margaret J. Duesbury and Noemi del{-}Toro and Birgit H. M. Meldal and Kalpana Paneerselvam and Livia Perfetto and Pablo Porras and Sandra E. Orchard and Anjali Shrivastava and Hsin{-}Yu Chang and Robert D. Finn and Alex L. Mitchell and Neil D. Rawlings and Lorna J. Richardson and Amaia Sangrador{-}Vegas and Judith A. Blake and Karen R. Christie and Mary E. Dolan and Harold J. Drabkin and David P. Hill and Li Ni and Dmitry M. Sitnikov and Midori A. Harris and Stephen G. Oliver and Kim Rutherford and Valerie Wood and Jaqueline Hayles and J{\"{u}}rg B{\"{a}}hler and Elizabeth R. Bolton and Jeffrey DePons and Melinda R. Dwinell and G. Thomas Hayman and Mary L. Kaldunski and Anne E. Kwitek and Stanley J. F. Laulederkind and Cody Plasterer and Marek Tutaj and Mahima Vedi and Shur{-}Jen Wang and Peter D'Eustachio and Lisa Matthews and James P. Balhoff and Suzi A. Aleksander and Michael J. Alexander and J. Michael Cherry and Stacia R. Engel and Felix Gondwe and Kalpana Karra and Stuart R. Miyasato and Robert S. Nash and Matt Simison and Marek S. Skrzypek and Shuai Weng and Edith D. Wong and Marc Feuermann and Pascale Gaudet and Anne Morgat and Erica Bakker and Tanya Z. Berardini and Leonore Reiser and Shabari Subramaniam and Eva Huala and Cecilia N. Arighi and Andrea H. Auchincloss and Kristian B. Axelsen and Ghislaine Argoud{-}Puy and Alex Bateman and Marie{-}Claude Blatter and Emmanuel Boutet and Emily Bowler and Lionel Breuza and Alan J. Bridge and Ramona Britto and Hema Bye{-}A{-}Jee and Cristina Casals{-}Casas and Elisabeth Coudert and Paul Denny and Anne Estreicher and Maria Livia Famiglietti and George E. Georghiou and Arnaud Gos and Nadine Gruaz{-}Gumowski and Emma Hatton{-}Ellis and Chantal Hulo and Alexandr Ignatchenko and Florence Jungo and Kati Laiho and Philippe Le Mercier and Damien Lieberherr and Antonia Lock and Yvonne Lussi and Alistair MacDougall and Michele Magrane and Maria Jesus Martin and Patrick Masson and Darren A. Natale and Nevila Hyka{-}Nouspikel and Ivo Pedruzzi and Lucille Pourcel and Sylvain Poux and Sangya Pundir and Catherine Rivoire and Elena Speretta and Shyamala Sundaram and Nidhi Tyagi and Kate Warner and Rossana Zaru and Cathy H. Wu and Alexander D. Diehl and Juancarlos Chan and Christian A. Grove and Raymond Y. N. Lee and Hans{-}Michael M{\"{u}}ller and Daniela Raciti and Kimberly Van Auken and Paul W. Sternberg and Matthew Berriman and Michael Paulini and Kevin L. Howe and Sibyl Gao and Adam Wright and Lincoln Stein and Douglas G. Howe and Sabrina Toro and Monte Westerfield and Pankaj Jaiswal and Laurel Cooper and Justin Elser}, title = {The Gene Ontology resource: enriching a GOld mine}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D325--D334}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa1113}, doi = {10.1093/NAR/GKAA1113}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/CarbonDGUHMBCDH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/NashWKWECP20, author = {Robert S. Nash and Shuai Weng and Kalpana Karra and Edith D. Wong and Stacia R. Engel and J. Michael Cherry and SGD Project}, title = {Incorporation of a unified protein abundance dataset into the Saccharomyces genome database}, journal = {Database J. Biol. Databases Curation}, volume = {2020}, pages = {baaa008}, year = {2020}, url = {https://doi.org/10.1093/database/baaa008}, doi = {10.1093/DATABASE/BAAA008}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/NashWKWECP20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AgapiteAAAAABBB20, author = {Julie Agapite and Laurent{-}Philippe Albou and Suzi A. Aleksander and Joanna Argasinska and Valerio Arnaboldi and Helen Attrill and Susan M. Bello and Judith A. Blake and Olin Blodgett and Yvonne M. Bradford and Carol J. Bult and Scott Cain and Brian R. Calvi and Seth Carbon and Juancarlos Chan and Wen J. Chen and J. Michael Cherry and Jae{-}Hyoung Cho and Karen R. Christie and Madeline A. Crosby and Jeff de Pons and Mary E. Dolan and Gilberto dos Santos and Barbara Dunn and Nathan A. Dunn and Anne E. Eagle and Dustin Ebert and Stacia R. Engel and David Fashena and Ken Frazer and Sibyl Gao and Felix Gondwe and Joshua L. Goodman and L. Sian Gramates and Christian A. Grove and Todd W. Harris and Marie{-}Claire Harrison and Douglas G. Howe and Kevin L. Howe and Sagar Jha and James A. Kadin and Thomas C. Kaufman and Patrick Kalita and Kalpana Karra and Ranjana Kishore and Stanley J. F. Laulederkind and Raymond Y. N. Lee and Kevin A. MacPherson and Steven J. Marygold and Beverley Matthews and Gillian H. Millburn and Stuart R. Miyasato and Sierra A. T. Moxon and Hans{-}Michael M{\"{u}}ller and Christopher J. Mungall and Anushya Muruganujan and Tremayne Mushayahama and Robert S. Nash and Patrick Ng and Michael Paulini and Norbert Perrimon and Christian Pich and Daniela Raciti and Joel E. Richardson and Matthew Russell and Susan Russo Gelbart and Leyla Ruzicka and Kevin Schaper and Mary Shimoyama and Matt Simison and Cynthia L. Smith and David R. Shaw and Ajay Shrivatsav and Marek S. Skrzypek and Jennifer R. Smith and Paul W. Sternberg and Christopher J. Tabone and Paul D. Thomas and Jyothi Thota and Sabrina Toro and Monika Tomczuk and Marek Tutaj and Monika Tutaj and Jose{-}Maria Urbano and Kimberly Van Auken and Ceri E. Van Slyke and Shur{-}Jen Wang and Shuai Weng and Monte Westerfield and Gary Williams and Edith D. Wong and Adam Wright and Karen Yook}, title = {Alliance of Genome Resources Portal: unified model organism research platform}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D650--D658}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz813}, doi = {10.1093/NAR/GKZ813}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/AgapiteAAAAABBB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/NgWMAADNSGJKWMS20, author = {Patrick C. Ng and Edith D. Wong and Kevin A. MacPherson and Suzi A. Aleksander and Joanna Argasinska and Barbara Dunn and Robert S. Nash and Marek S. Skrzypek and Felix Gondwe and Sagar Jha and Kalpana Karra and Shuai Weng and Stuart R. Miyasato and Matt Simison and Stacia R. Engel and J. Michael Cherry}, title = {Transcriptome visualization and data availability at the Saccharomyces Genome Database}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D743--D748}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz892}, doi = {10.1093/NAR/GKZ892}, timestamp = {Sat, 25 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/NgWMAADNSGJKWMS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/LuoHGHKLMSJLBGL20, author = {Yunhai Luo and Benjamin C. Hitz and Idan Gabdank and Jason A. Hilton and Meenakshi S. Kagda and Bonita Lam and Zachary Myers and Paul Sud and Jennifer Jou and Khine Lin and Ulugbek K. Baymuradov and Keenan Graham and Casey Litton and Stuart R. Miyasato and J. Seth Strattan and Otto Jolanki and Jin{-}Wook Lee and Forrest Tanaka and Philip Adenekan and Emma O'Neill and J. Michael Cherry}, title = {New developments on the Encyclopedia of {DNA} Elements {(ENCODE)} data portal}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D882--D889}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz1062}, doi = {10.1093/NAR/GKZ1062}, timestamp = {Sat, 25 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/LuoHGHKLMSJLBGL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/WongSWBMPOECP19, author = {Edith D. Wong and Marek S. Skrzypek and Shuai Weng and Gail Binkley and Birgit H. M. Meldal and Livia Perfetto and Sandra E. Orchard and Stacia R. Engel and J. Michael Cherry and SGD Project}, title = {Integration of macromolecular complex data into the Saccharomyces Genome Database}, journal = {Database J. Biol. Databases Curation}, volume = {2019}, pages = {baz008}, year = {2019}, url = {https://doi.org/10.1093/database/baz008}, doi = {10.1093/DATABASE/BAZ008}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/WongSWBMPOECP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/EngelSHWNWBSKC18, author = {Stacia R. Engel and Marek S. Skrzypek and Sage T. Hellerstedt and Edith D. Wong and Robert S. Nash and Shuai Weng and Gail Binkley and Travis K. Sheppard and Kalpana Karra and J. Michael Cherry}, title = {Updated regulation curation model at the Saccharomyces Genome Database}, journal = {Database J. Biol. Databases Curation}, volume = {2018}, pages = {bay007}, year = {2018}, url = {https://doi.org/10.1093/database/bay007}, doi = {10.1093/DATABASE/BAY007}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/EngelSHWNWBSKC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GabdankCDHDBNOG18, author = {Idan Gabdank and Esther T. Chan and Jean M. Davidson and Jason A. Hilton and Carrie A. Davis and Ulugbek K. Baymuradov and Aditi K. Narayanan and Kathrina C. Onate and Keenan Graham and Stuart R. Miyasato and Timothy R. Dreszer and J. Seth Strattan and Otto Jolanki and Forrest Tanaka and Benjamin C. Hitz and Cricket A. Sloan and J. Michael Cherry}, title = {Prevention of data duplication for high throughput sequencing repositories}, journal = {Database J. Biol. Databases Curation}, volume = {2018}, pages = {bay008}, year = {2018}, url = {https://doi.org/10.1093/database/bay008}, doi = {10.1093/DATABASE/BAY008}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/GabdankCDHDBNOG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SkrzypekNWMHEKW18, author = {Marek S. Skrzypek and Robert S. Nash and Edith D. Wong and Kevin A. MacPherson and Sage T. Hellerstedt and Stacia R. Engel and Kalpana Karra and Shuai Weng and Travis K. Sheppard and Gail Binkley and Matt Simison and Stuart R. Miyasato and J. Michael Cherry}, title = {Saccharomyces genome database informs human biology}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D736--D742}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx1112}, doi = {10.1093/NAR/GKX1112}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SkrzypekNWMHEKW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/DavisHSCDGHJBNO18, author = {Carrie A. Davis and Benjamin C. Hitz and Cricket A. Sloan and Esther T. Chan and Jean M. Davidson and Idan Gabdank and Jason A. Hilton and Kriti Jain and Ulugbek K. Baymuradov and Aditi K. Narayanan and Kathrina C. Onate and Keenan Graham and Stuart R. Miyasato and Timothy R. Dreszer and J. Seth Strattan and Otto Jolanki and Forrest Tanaka and J. Michael Cherry}, title = {The Encyclopedia of {DNA} elements {(ENCODE):} data portal update}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D794--D801}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx1081}, doi = {10.1093/NAR/GKX1081}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/DavisHSCDGHJBNO18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/MacPhersonSWDH17, author = {Kevin A. MacPherson and Barry Starr and Edith D. Wong and Kyla S. Dalusag and Sage T. Hellerstedt and Olivia W. Lang and Robert S. Nash and Marek S. Skrzypek and Stacia R. Engel and J. Michael Cherry}, title = {Outreach and online training services at the Saccharomyces Genome Database}, journal = {Database J. Biol. Databases Curation}, volume = {2017}, pages = {bax002}, year = {2017}, url = {https://doi.org/10.1093/database/bax002}, doi = {10.1093/DATABASE/BAX002}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/MacPhersonSWDH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/HellerstedtNWPW17, author = {Sage T. Hellerstedt and Robert S. Nash and Shuai Weng and Kelley M. Paskov and Edith D. Wong and Kalpana Karra and Stacia R. Engel and J. Michael Cherry}, title = {Curated protein information in the Saccharomyces genome database}, journal = {Database J. Biol. Databases Curation}, volume = {2017}, pages = {bax011}, year = {2017}, url = {https://doi.org/10.1093/database/bax011}, doi = {10.1093/DATABASE/BAX011}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/HellerstedtNWPW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/EngelWBPSC16, author = {Stacia R. Engel and Shuai Weng and Gail Binkley and Kelley M. Paskov and Giltae Song and J. Michael Cherry}, title = {From one to many: expanding the \emph{Saccharomyces cerevisiae} reference genome panel}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw020}, doi = {10.1093/DATABASE/BAW020}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/EngelWBPSC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/HongSCDMSHGNHLR16, author = {Eurie L. Hong and Cricket A. Sloan and Esther T. Chan and Jean M. Davidson and Venkat S. Malladi and J. Seth Strattan and Benjamin C. Hitz and Idan Gabdank and Aditi K. Narayanan and Marcus Ho and Brian T. Lee and Laurence D. Rowe and Timothy R. Dreszer and Greg R. Roe and Nikhil R. Podduturi and Forrest Tanaka and Jason A. Hilton and J. Michael Cherry}, title = {Principles of metadata organization at the {ENCODE} data coordination center}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw001}, doi = {10.1093/DATABASE/BAW001}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/HongSCDMSHGNHLR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/SongBBCDDEHKHNP16, author = {Giltae Song and Rama Balakrishnan and Gail Binkley and Maria C. Costanzo and Kyla S. Dalusag and Janos Demeter and Stacia R. Engel and Sage T. Hellerstedt and Kalpana Karra and Benjamin C. Hitz and Robert S. Nash and Kelley M. Paskov and Travis K. Sheppard and Marek S. Skrzypek and Shuai Weng and Edith D. Wong and J. Michael Cherry}, title = {Integration of new alternative reference strain genome sequences into the \emph{Saccharomyces} genome database}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw074}, doi = {10.1093/DATABASE/BAW074}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/SongBBCDDEHKHNP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SheppardHESBBCD16, author = {Travis K. Sheppard and Benjamin C. Hitz and Stacia R. Engel and Giltae Song and Rama Balakrishnan and Gail Binkley and Maria C. Costanzo and Kyla S. Dalusag and Janos Demeter and Sage T. Hellerstedt and Kalpana Karra and Robert S. Nash and Kelley M. Paskov and Marek S. Skrzypek and Shuai Weng and Edith D. Wong and J. Michael Cherry}, title = {The \emph{Saccharomyces} Genome Database Variant Viewer}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {698--702}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv1250}, doi = {10.1093/NAR/GKV1250}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SheppardHESBBCD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SloanCDMSHGNHLR16, author = {Cricket A. Sloan and Esther T. Chan and Jean M. Davidson and Venkat S. Malladi and J. Seth Strattan and Benjamin C. Hitz and Idan Gabdank and Aditi K. Narayanan and Marcus Ho and Brian T. Lee and Laurence D. Rowe and Timothy R. Dreszer and Greg Roe and Nikhil R. Podduturi and Forrest Tanaka and Eurie L. Hong and J. Michael Cherry}, title = {{ENCODE} data at the {ENCODE} portal}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {726--732}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv1160}, doi = {10.1093/NAR/GKV1160}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SloanCDMSHGNHLR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/semweb/DeraspeKBSMCCD16, author = {Maxime D{\'{e}}raspe and Kalpana Karra and Gail Binkley and Julie M. Sullivan and Gos Micklem and Jacques Corbeil and J. Michael Cherry and Michel Dumontier}, editor = {Cui Tao and Guoqian Jiang and Dezhao Song and Jeff Heflin and Frank Schilder}, title = {Semantic Research Platform for Model Organisms}, booktitle = {Proceedings of the First International Workshop on Biomedical Data Integration and Discovery {(BMDID} 2016) co-located with The 15th International Semantic Web Conference {(ISWC} 2016), Kobe, Japan, October 17, 2016}, series = {{CEUR} Workshop Proceedings}, volume = {1709}, publisher = {CEUR-WS.org}, year = {2016}, url = {https://ceur-ws.org/Vol-1709/BMDID\_2016\_paper\_1.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:07 +0100}, biburl = {https://dblp.org/rec/conf/semweb/DeraspeKBSMCCD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/DeraspeBBCCCCCH16, author = {Maxime D{\'{e}}raspe and Gail Binkley and Daniela Butano and Matthew Chadwick and J. Michael Cherry and Justin Clark{-}Casey and Sergio Contrino and Jacques Corbeil and Joshua Heimbach and Kalpana Karra and Rachel Lyne and Julie M. Sullivan and Yo Yehudi and Gos Micklem and Michel Dumontier}, editor = {Adrian Paschke and Albert Burger and Andrea Splendiani and M. Scott Marshall and Paolo Romano}, title = {Making Linked Data {SPARQL} with the InterMine Biological Data Warehouse}, booktitle = {Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, Amsterdam, The Netherlands, December 5-8, 2016}, series = {{CEUR} Workshop Proceedings}, volume = {1795}, publisher = {CEUR-WS.org}, year = {2016}, url = {https://ceur-ws.org/Vol-1795/paper8.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:02 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/DeraspeBBCCCCCH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/MalladiEPRCDHHL15, author = {Venkat S. Malladi and Drew T. Erickson and Nikhil R. Podduturi and Laurence D. Rowe and Esther T. Chan and Jean M. Davidson and Benjamin C. Hitz and Marcus Ho and Brian T. Lee and Stuart R. Miyasato and Greg R. Roe and Matt Simison and Cricket A. Sloan and J. Seth Strattan and Forrest Tanaka and W. James Kent and J. Michael Cherry and Eurie L. Hong}, title = {Ontology application and use at the {ENCODE} {DCC}}, journal = {Database J. Biol. Databases Curation}, volume = {2015}, year = {2015}, url = {https://doi.org/10.1093/database/bav010}, doi = {10.1093/DATABASE/BAV010}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/MalladiEPRCDHHL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CostanzoEWLKCWPRBHC14, author = {Maria C. Costanzo and Stacia R. Engel and Edith D. Wong and Paul Lloyd and Kalpana Karra and Esther T. Chan and Shuai Weng and Kelley M. Paskov and Greg R. Roe and Gail Binkley and Benjamin C. Hitz and J. Michael Cherry}, title = {\emph{Saccharomyces} genome database provides new regulation data}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {717--725}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1158}, doi = {10.1093/NAR/GKT1158}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CostanzoEWLKCWPRBHC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/BalakrishnanHHAC13, author = {Rama Balakrishnan and Midori A. Harris and Rachael P. Huntley and Kimberly Van Auken and J. Michael Cherry}, title = {A guide to best practices for Gene Ontology {(GO)} manual annotation}, journal = {Database J. Biol. Databases Curation}, volume = {2013}, year = {2013}, url = {https://doi.org/10.1093/database/bat054}, doi = {10.1093/DATABASE/BAT054}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/BalakrishnanHHAC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/EngelC13, author = {Stacia R. Engel and J. Michael Cherry}, title = {The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple \emph{Saccharomyces cerevisiae} strains at the \emph{Saccharomyces} Genome Database}, journal = {Database J. Biol. Databases Curation}, volume = {2013}, year = {2013}, url = {https://doi.org/10.1093/database/bat012}, doi = {10.1093/DATABASE/BAT012}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/EngelC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GaudetMRABCKOY13, author = {Pascale Gaudet and Monica C. Munoz{-}Torres and Marc Robinson{-}Rechavi and Teresa K. Attwood and Alex Bateman and J. Michael Cherry and Renate Kania and Claire O'Donovan and Chisato Yamasaki}, title = {DATABASE, \emph{The Journal of Biological Databases and Curation}, is now the official journal of the International Society for Biocuration}, journal = {Database J. Biol. Databases Curation}, volume = {2013}, year = {2013}, url = {https://doi.org/10.1093/database/bat077}, doi = {10.1093/DATABASE/BAT077}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/GaudetMRABCKOY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/WongKHHC13, author = {Edith D. Wong and Kalpana Karra and Benjamin C. Hitz and Eurie L. Hong and J. Michael Cherry}, title = {The YeastGenome app: the \emph{Saccharomyces} Genome Database at your fingertips}, journal = {Database J. Biol. Databases Curation}, volume = {2013}, year = {2013}, url = {https://doi.org/10.1093/database/bat004}, doi = {10.1093/DATABASE/BAT004}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/WongKHHC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/BalakrishnanPKHBHSMC12, author = {Rama Balakrishnan and Julie Park and Kalpana Karra and Benjamin C. Hitz and Gail Binkley and Eurie L. Hong and Julie M. Sullivan and Gos Micklem and J. Michael Cherry}, title = {YeastMine - an integrated data warehouse for \emph{Saccharomyces cerevisiae} data as a multipurpose tool-kit}, journal = {Database J. Biol. Databases Curation}, volume = {2012}, year = {2012}, url = {https://doi.org/10.1093/database/bar062}, doi = {10.1093/DATABASE/BAR062}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/BalakrishnanPKHBHSMC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/BurgeABBCOXG12, author = {Sarah W. Burge and Teresa K. Attwood and Alex Bateman and Tanya Z. Berardini and J. Michael Cherry and Claire O'Donovan and Ioannis Xenarios and Pascale Gaudet}, title = {Biocurators and Biocuration: surveying the 21st century challenges}, journal = {Database J. Biol. Databases Curation}, volume = {2012}, year = {2012}, url = {https://doi.org/10.1093/database/bar059}, doi = {10.1093/DATABASE/BAR059}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/BurgeABBCOXG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/ChanC12, author = {Esther T. Chan and J. Michael Cherry}, title = {Considerations for creating and annotating the budding yeast Genome Map at {SGD:} a progress report}, journal = {Database J. Biol. Databases Curation}, volume = {2012}, year = {2012}, url = {https://doi.org/10.1093/database/bar057}, doi = {10.1093/DATABASE/BAR057}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/ChanC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GaudetABBBCDFGHKKMKMNOOPRSSSAVWYM12, author = {Pascale Gaudet and Cecilia N. Arighi and Frederic B. Bastian and Alex Bateman and Judith A. Blake and J. Michael Cherry and Peter D'Eustachio and Robert D. Finn and Michelle G. Giglio and Lynette Hirschman and Renate Kania and William Klimke and Maria Jesus Martin and Ilene Karsch{-}Mizrachi and Monica C. Munoz{-}Torres and Darren A. Natale and Claire O'Donovan and B. F. Francis Ouellette and Kim D. Pruitt and Marc Robinson{-}Rechavi and Susanna{-}Assunta Sansone and Paul N. Schofield and Granger G. Sutton and Kimberly Van Auken and Sona Vasudevan and Cathy H. Wu and Jasmine Young and Raja Mazumder}, title = {Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference}, journal = {Database J. Biol. Databases Curation}, volume = {2012}, year = {2012}, url = {https://doi.org/10.1093/database/bas036}, doi = {10.1093/DATABASE/BAS036}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/GaudetABBBCDFGHKKMKMNOOPRSSSAVWYM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/ParkCBCH12, author = {Julie Park and Maria C. Costanzo and Rama Balakrishnan and J. Michael Cherry and Eurie L. Hong}, title = {CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations}, journal = {Database J. Biol. Databases Curation}, volume = {2012}, year = {2012}, url = {https://doi.org/10.1093/database/bas001}, doi = {10.1093/DATABASE/BAS001}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/ParkCBCH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CherryHABBCCCDEFHHKKMNPSSWW12, author = {J. Michael Cherry and Eurie L. Hong and Craig Amundsen and Rama Balakrishnan and Gail Binkley and Esther T. Chan and Karen R. Christie and Maria C. Costanzo and Selina S. Dwight and Stacia R. Engel and Dianna G. Fisk and Jodi E. Hirschman and Benjamin C. Hitz and Kalpana Karra and Cynthia J. Krieger and Stuart R. Miyasato and Robert S. Nash and Julie Park and Marek S. Skrzypek and Matt Simison and Shuai Weng and Edith D. Wong}, title = {Saccharomyces Genome Database: the genomics resource of budding yeast}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {700--705}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr1029}, doi = {10.1093/NAR/GKR1029}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CherryHABBCCCDEFHHKKMNPSSWW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/CostanzoPBCH11, author = {Maria C. Costanzo and Julie Park and Rama Balakrishnan and J. Michael Cherry and Eurie L. Hong}, title = {Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/bar004}, doi = {10.1093/DATABASE/BAR004}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/CostanzoPBCH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11, author = {Pascale Gaudet and Amos Bairoch and Dawn Field and Susanna{-}Assunta Sansone and Chris F. Taylor and Teresa K. Attwood and Alex Bateman and Judith A. Blake and Carol J. Bult and J. Michael Cherry and Rex L. Chisholm and Guy Cochrane and Charles E. Cook and Janan T. Eppig and Michael Y. Galperin and Robert Gentleman and Carole A. Goble and Takashi Gojobori and John M. Hancock and Douglas G. Howe and Tadashi Imanishi and Janet Kelso and David Landsman and Suzanna E. Lewis and Ilene Karsch{-}Mizrachi and Sandra E. Orchard and B. F. Francis Ouellette and Shoba Ranganathan and Lorna J. Richardson and Philippe Rocca{-}Serra and Paul N. Schofield and Damian Smedley and Christopher Southan and Tin Wee Tan and Tatiana A. Tatusova and Patricia L. Whetzel and Owen White and Chisato Yamasaki}, title = {Towards BioDBcore: a community-defined information specification for biological databases}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/baq027}, doi = {10.1093/DATABASE/BAQ027}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RangarajanSYCHOFDISCSM11, author = {Arun Rangarajan and Tim Schedl and Karen Yook and Juancarlos Chan and Stephen Haenel and Lolly Otis and Sharon Faelten and Tracey DePellegrin{-}Connelly and Ruth Isaacson and Marek S. Skrzypek and J. Michael Cherry and Paul W. Sternberg and Hans{-}Michael M{\"{u}}ller}, title = {Toward an interactive article: integrating journals and biological databases}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {175}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-175}, doi = {10.1186/1471-2105-12-175}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RangarajanSYCHOFDISCSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11, author = {Pascale Gaudet and Amos Bairoch and Dawn Field and Susanna{-}Assunta Sansone and Chris F. Taylor and Teresa K. Attwood and Alex Bateman and Judith A. Blake and Carol J. Bult and J. Michael Cherry and Rex L. Chisholm and Guy Cochrane and Charles E. Cook and Janan T. Eppig and Michael Y. Galperin and Robert Gentleman and Carole A. Goble and Takashi Gojobori and John M. Hancock and Douglas G. Howe and Tadashi Imanishi and Janet Kelso and David Landsman and Suzanna E. Lewis and Ilene Karsch{-}Mizrachi and Sandra E. Orchard and B. F. Francis Ouellette and Shoba Ranganathan and Lorna J. Richardson and Philippe Rocca{-}Serra and Paul N. Schofield and Damian Smedley and Christopher Southan and Tin Wee Tan and Tatiana A. Tatusova and Patricia L. Whetzel and Owen White and Chisato Yamasaki}, title = {Towards BioDBcore: a community-defined information specification for biological databases}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {7--10}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1173}, doi = {10.1093/NAR/GKQ1173}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/EngelBBCCDFHHHKLMNOPSWWDBC10, author = {Stacia R. Engel and Rama Balakrishnan and Gail Binkley and Karen R. Christie and Maria C. Costanzo and Selina S. Dwight and Dianna G. Fisk and Jodi E. Hirschman and Benjamin C. Hitz and Eurie L. Hong and Cynthia J. Krieger and Michael S. Livstone and Stuart R. Miyasato and Robert S. Nash and Rose Oughtred and Julie Park and Marek S. Skrzypek and Shuai Weng and Edith D. Wong and Kara Dolinski and David Botstein and J. Michael Cherry}, title = {\emph{Saccharomyces} Genome Database provides mutant phenotype data}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Database-Issue}, pages = {433--436}, year = {2010}, url = {https://doi.org/10.1093/nar/gkp917}, doi = {10.1093/NAR/GKP917}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/EngelBBCCDFHHHKLMNOPSWWDBC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/CostanzoSNWBEHHC09, author = {Maria C. Costanzo and Marek S. Skrzypek and Robert S. Nash and Edith D. Wong and Gail Binkley and Stacia R. Engel and Benjamin C. Hitz and Eurie L. Hong and J. Michael Cherry}, title = {New mutant phenotype data curation system in the \emph{Saccharomyces} Genome Database}, journal = {Database J. Biol. Databases Curation}, volume = {2009}, year = {2009}, url = {https://doi.org/10.1093/database/bap001}, doi = {10.1093/DATABASE/BAP001}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/CostanzoSNWBEHHC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HongBDCPBCDEFHHKLMNOSWWZDBC08, author = {Eurie L. Hong and Rama Balakrishnan and Qing Dong and Karen R. Christie and Julie Park and Gail Binkley and Maria C. Costanzo and Selina S. Dwight and Stacia R. Engel and Dianna G. Fisk and Jodi E. Hirschman and Benjamin C. Hitz and Cynthia J. Krieger and Michael S. Livstone and Stuart R. Miyasato and Robert S. Nash and Rose Oughtred and Marek S. Skrzypek and Shuai Weng and Edith D. Wong and Kathy K. Zhu and Kara Dolinski and David Botstein and J. Michael Cherry}, title = {Gene Ontology annotations at {SGD:} new data sources and annotation methods}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Database-Issue}, pages = {577--581}, year = {2008}, url = {https://doi.org/10.1093/nar/gkm909}, doi = {10.1093/NAR/GKM909}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HongBDCPBCDEFHHKLMNOSWWZDBC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CrangleCHZ07, author = {Colleen E. Crangle and J. Michael Cherry and Eurie L. Hong and Alex Zbyslaw}, title = {Mining experimental evidence of molecular function claims from the literature}, journal = {Bioinform.}, volume = {23}, number = {23}, pages = {3232--3240}, year = {2007}, url = {https://doi.org/10.1093/bioinformatics/btm495}, doi = {10.1093/BIOINFORMATICS/BTM495}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CrangleCHZ07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/NashWHBCCDEFHHLOPSTBDLMSSDBC07, author = {Robert S. Nash and Shuai Weng and Benjamin C. Hitz and Rama Balakrishnan and Karen R. Christie and Maria C. Costanzo and Selina S. Dwight and Stacia R. Engel and Dianna G. Fisk and Jodi E. Hirschman and Eurie L. Hong and Michael S. Livstone and Rose Oughtred and Julie Park and Marek S. Skrzypek and Chandra L. Theesfeld and Gail Binkley and Qing Dong and Christopher Lane and Stuart R. Miyasato and Anand Sethuraman and Mark Schroeder and Kara Dolinski and David Botstein and J. Michael Cherry}, title = {Expanded protein information at {SGD:} new pages and proteome browser}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Database-Issue}, pages = {468--471}, year = {2007}, url = {https://doi.org/10.1093/nar/gkl931}, doi = {10.1093/NAR/GKL931}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/NashWHBCCDEFHHLOPSTBDLMSSDBC07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HirschmanBCCDEFHLNPOSSTWABDLMSSTWDBC06, author = {Jodi E. Hirschman and Rama Balakrishnan and Karen R. Christie and Maria C. Costanzo and Selina S. Dwight and Stacia R. Engel and Dianna G. Fisk and Eurie L. Hong and Michael S. Livstone and Robert S. Nash and Julie Park and Rose Oughtred and Marek S. Skrzypek and Barry Starr and Chandra L. Theesfeld and Jennifer M. Williams and Rey Andrada and Gail Binkley and Qing Dong and Christopher Lane and Stuart R. Miyasato and Anand Sethuraman and Mark Schroeder and Mayank K. Thanawala and Shuai Weng and Kara Dolinski and David Botstein and J. Michael Cherry}, title = {Genome Snapshot: a new resource at the \emph{Saccharomyces} Genome Database {(SGD)} presenting an overview of the \emph{Saccharomyces cerevisiae} genome}, journal = {Nucleic Acids Res.}, volume = {34}, number = {Database-Issue}, pages = {442--445}, year = {2006}, url = {https://doi.org/10.1093/nar/gkj117}, doi = {10.1093/NAR/GKJ117}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HirschmanBCCDEFHLNPOSSTWABDLMSSTWDBC06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/StoverKBDFNSWC06, author = {Nicholas A. Stover and Cynthia J. Krieger and Gail Binkley and Qing Dong and Dianna G. Fisk and Robert S. Nash and Anand Sethuraman and Shuai Weng and J. Michael Cherry}, title = {\emph{Tetrahymena} Genome Database {(TGD):} a new genomic resource for \emph{Tetrahymena thermophila} research}, journal = {Nucleic Acids Res.}, volume = {34}, number = {Database-Issue}, pages = {500--503}, year = {2006}, url = {https://doi.org/10.1093/nar/gkj054}, doi = {10.1093/NAR/GKJ054}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/StoverKBDFNSWC06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BalakrishnanCCDDEFHHNOSTBDLSWBC05, author = {Rama Balakrishnan and Karen R. Christie and Maria C. Costanzo and Kara Dolinski and Selina S. Dwight and Stacia R. Engel and Dianna G. Fisk and Jodi E. Hirschman and Eurie L. Hong and Robert S. Nash and Rose Oughtred and Marek S. Skrzypek and Chandra L. Theesfeld and Gail Binkley and Qing Dong and Christopher Lane and Anand Sethuraman and Shuai Weng and David Botstein and J. Michael Cherry}, title = {Fungal {BLAST} and Model Organism {BLASTP} Best Hits: new comparison resources at the \emph{Saccharomyces} Genome Database {(SGD)}}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Database-Issue}, pages = {374--377}, year = {2005}, url = {https://doi.org/10.1093/nar/gki023}, doi = {10.1093/NAR/GKI023}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BalakrishnanCCDDEFHHNOSTBDLSWBC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/YanYBMWWCR05, author = {Thomas Yan and Danny Yoo and Tanya Z. Berardini and Lukas A. Mueller and Dan C. Weems and Shuai Weng and J. Michael Cherry and Seung Yon Rhee}, title = {PatMatch: a program for finding patterns in peptide and nucleotide sequences}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Web-Server-Issue}, pages = {262--266}, year = {2005}, url = {https://doi.org/10.1093/nar/gki368}, doi = {10.1093/NAR/GKI368}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/YanYBMWWCR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DwightBCCDEFFHHINSSTABDLSWBC04, author = {Selina S. Dwight and Rama Balakrishnan and Karen R. Christie and Maria C. Costanzo and Kara Dolinski and Stacia R. Engel and Becket Feierbach and Dianna G. Fisk and Jodi E. Hirschman and Eurie L. Hong and Laurie Issel{-}Tarver and Robert S. Nash and Anand Sethuraman and Barry Starr and Chandra L. Theesfeld and Rey Andrada and Gail Binkley and Qing Dong and Christopher Lane and Mark Schroeder and Shuai Weng and David Botstein and J. Michael Cherry}, title = {Saccharomyces genome database: Underlying principles and organisation}, journal = {Briefings Bioinform.}, volume = {5}, number = {1}, pages = {9--22}, year = {2004}, url = {https://doi.org/10.1093/bib/5.1.9}, doi = {10.1093/BIB/5.1.9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/DwightBCCDEFFHHINSSTABDLSWBC04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WiederkehrBMKSHMICYLCLP04, author = {Christa Niederhauser{-}Wiederkehr and R. Basavaraj and Cyril Sarrauste de Menthi{\`{e}}re and R. Koch and U. Schlecht and Leandro Hermida and Benjamin Masdoua and Ryohei Ishii and V. Cassen and M. Yamamoto and Christopher Lane and J. Michael Cherry and N. Lamb and Michael Primig}, title = {Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation}, journal = {Bioinform.}, volume = {20}, number = {5}, pages = {808--811}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth030}, doi = {10.1093/BIOINFORMATICS/BTH030}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WiederkehrBMKSHMICYLCLP04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BoyleWGJBCS04, author = {Elizabeth I. Boyle and Shuai Weng and Jeremy Gollub and Heng Jin and David Botstein and J. Michael Cherry and Gavin Sherlock}, title = {{GO:} : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes}, journal = {Bioinform.}, volume = {20}, number = {18}, pages = {3710--3715}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth456}, doi = {10.1093/BIOINFORMATICS/BTH456}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BoyleWGJBCS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ChristieWBCDDEFFHHINSSTABDLSBC04, author = {Karen R. Christie and Shuai Weng and Rama Balakrishnan and Maria C. Costanzo and Kara Dolinski and Selina S. Dwight and Stacia R. Engel and Becket Feierbach and Dianna G. Fisk and Jodi E. Hirschman and Eurie L. Hong and Laurie Issel{-}Tarver and Robert S. Nash and Anand Sethuraman and Barry Starr and Chandra L. Theesfeld and Rey Andrada and Gail Binkley and Qing Dong and Christopher Lane and Mark Schroeder and David Botstein and J. Michael Cherry}, title = {Saccharomyces Genome Database {(SGD)} provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms}, journal = {Nucleic Acids Res.}, volume = {32}, number = {Database-Issue}, pages = {311--314}, year = {2004}, url = {https://doi.org/10.1093/nar/gkh033}, doi = {10.1093/NAR/GKH033}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ChristieWBCDDEFFHHINSSTABDLSBC04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WiederkehrBM04, author = {Christa Niederhauser{-}Wiederkehr and R. Basavaraj and Cyril Sarrauste de Menthi{\`{e}}re and Leandro Hermida and R. Koch and U. Schlecht and A. Amon and Sophie Brachat and Michael Breitenbach and Peter Briza and Sandrine Caburet and J. Michael Cherry and R. Davis and A. Deutschbauer and H. G. Dickinson and T. Dumitrescu and M. Fellous and A. Goldman and J. Anton Grootegoed and R. Scott Hawley and Ryohei Ishii and B. J{\'{e}}gou and R. J. Kaufman and Franz Klein and N. Lamb and B. Maro and Kim Nasmyth and A. Nicolas and T. Orr{-}Weaver and Peter Philippsen and Charles Pineau and K. P. Rabitsch and V. Reinke and H. Roest and W. Saunders and M. Schr{\"{o}}der and Tim Schedl and M. Siep and A. Villeneuve and Debra J. Wolgemuth and M. Yamamoto and D. Zickler and R. E. Esposito and Michael Primig}, title = {GermOnline, a cross-species community knowledgebase on germ cell differentiation}, journal = {Nucleic Acids Res.}, volume = {32}, number = {Database-Issue}, pages = {560--567}, year = {2004}, url = {https://doi.org/10.1093/nar/gkh055}, doi = {10.1093/NAR/GKH055}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/WiederkehrBM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ws/BadaSGGABCHL04, author = {Michael Bada and Robert Stevens and Carole A. Goble and Yolanda Gil and Michael Ashburner and Judith A. Blake and J. Michael Cherry and Midori A. Harris and Suzanna Lewis}, title = {A short study on the success of the Gene Ontology}, journal = {J. Web Semant.}, volume = {1}, number = {2}, pages = {235--240}, year = {2004}, url = {https://doi.org/10.1016/j.websem.2003.12.003}, doi = {10.1016/J.WEBSEM.2003.12.003}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ws/BadaSGGABCHL04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/trec/CrangleZCH04, author = {Colleen E. Crangle and Alex Zbyslaw and J. Michael Cherry and Eurie L. Hong}, editor = {Ellen M. Voorhees and Lori P. Buckland}, title = {Concept Extraction and Synonymy Management for Biomedical Information Retrieval}, booktitle = {Proceedings of the Thirteenth Text REtrieval Conference, {TREC} 2004, Gaithersburg, Maryland, USA, November 16-19, 2004}, series = {{NIST} Special Publication}, volume = {500-261}, publisher = {National Institute of Standards and Technology {(NIST)}}, year = {2004}, url = {http://trec.nist.gov/pubs/trec13/papers/converspeech.geo.pdf}, timestamp = {Wed, 07 Jul 2021 16:44:22 +0200}, biburl = {https://dblp.org/rec/conf/trec/CrangleZCH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WengDBCCDDEFHISTABLSBC03, author = {Shuai Weng and Qing Dong and Rama Balakrishnan and Karen R. Christie and Maria C. Costanzo and Kara Dolinski and Selina S. Dwight and Stacia R. Engel and Dianna G. Fisk and Eurie L. Hong and Laurie Issel{-}Tarver and Anand Sethuraman and Chandra L. Theesfeld and Rey Andrada and Gail Binkley and Christopher Lane and Mark Schroeder and David Botstein and J. Michael Cherry}, title = {Saccharomyces Genome Database {(SGD)} provides biochemical and structural information for budding yeast proteins}, journal = {Nucleic Acids Res.}, volume = {31}, number = {1}, pages = {216--218}, year = {2003}, url = {https://doi.org/10.1093/nar/gkg054}, doi = {10.1093/NAR/GKG054}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/WengDBCCDDEFHISTABLSBC03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/DiehnSBJMHRCBBA03, author = {Maximilian Diehn and Gavin Sherlock and Gail Binkley and Heng Jin and John C. Matese and Tina Hernandez{-}Boussard and Christian A. Rees and J. Michael Cherry and David Botstein and Patrick O. Brown and Ash A. Alizadeh}, title = {{SOURCE:} a unified genomic resource of functional annotations, ontologies, and gene expression data}, journal = {Nucleic Acids Res.}, volume = {31}, number = {1}, pages = {219--223}, year = {2003}, url = {https://doi.org/10.1093/nar/gkg014}, doi = {10.1093/NAR/GKG014}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/DiehnSBJMHRCBBA03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/DongBBCCDDEFHHNISTWBC03, author = {Qing Dong and Rama Balakrishnan and Gail Binkley and Karen R. Christie and Maria C. Costanzo and Kara Dolinski and Selina S. Dwight and Stacia R. Engel and Dianna G. Fisk and Jodi E. Hirschman and Eurie L. Hong and Robert S. Nash and Laurie Issel{-}Tarver and Anand Sethuraman and Chandra L. Theesfeld and Shuai Weng and David Botstein and J. Michael Cherry}, title = {Gene Function, Metabolic Pathways and Comparative Genomics in Yeast}, booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003}, pages = {437--438}, publisher = {{IEEE} Computer Society}, year = {2003}, url = {https://doi.org/10.1109/CSB.2003.1227362}, doi = {10.1109/CSB.2003.1227362}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/DongBBCCDDEFHHNISTWBC03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/DwightHDBBCFISSSWBC03, author = {Selina S. Dwight and Midori A. Harris and Kara Dolinski and Catherine A. Ball and Gail Binkley and Karen R. Christie and Dianna G. Fisk and Laurie Issel{-}Tarver and Mark Schroeder and Gavin Sherlock and Anand Sethuraman and Shuai Weng and David Botstein and J. Michael Cherry}, title = {Saccharomyces Genome Database {(SGD)} provides secondary gene annotation using the Gene Ontology {(GO)}}, journal = {Nucleic Acids Res.}, volume = {30}, number = {1}, pages = {69--72}, year = {2002}, url = {https://doi.org/10.1093/nar/30.1.69}, doi = {10.1093/NAR/30.1.69}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/DwightHDBBCFISSSWBC03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/EwingC01, author = {Rob M. Ewing and J. Michael Cherry}, title = {Visualization of expression clusters using Sammon's non-linear mapping}, journal = {Bioinform.}, volume = {17}, number = {7}, pages = {658--659}, year = {2001}, url = {https://doi.org/10.1093/bioinformatics/17.7.658}, doi = {10.1093/BIOINFORMATICS/17.7.658}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/EwingC01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BallJSWMABDDHISBC01, author = {Catherine A. Ball and Heng Jin and Gavin Sherlock and Shuai Weng and John C. Matese and Rey Andrada and Gail Binkley and Kara Dolinski and Selina S. Dwight and Midori A. Harris and Laurie Issel{-}Tarver and Mark Schroeder and David Botstein and J. Michael Cherry}, title = {Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data}, journal = {Nucleic Acids Res.}, volume = {29}, number = {1}, pages = {80--81}, year = {2001}, url = {https://doi.org/10.1093/nar/29.1.80}, doi = {10.1093/NAR/29.1.80}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BallJSWMABDDHISBC01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SherlockHKBMDKWJBESBBC01, author = {Gavin Sherlock and Tina Hernandez{-}Boussard and Andrew Kasarskis and Gail Binkley and John C. Matese and Selina S. Dwight and Miroslava Kaloper and Shuai Weng and Heng Jin and Catherine A. Ball and Michael B. Eisen and Paul T. Spellman and Patrick O. Brown and David Botstein and J. Michael Cherry}, title = {The Stanford Microarray Database}, journal = {Nucleic Acids Res.}, volume = {29}, number = {1}, pages = {152--155}, year = {2001}, url = {https://doi.org/10.1093/nar/29.1.152}, doi = {10.1093/NAR/29.1.152}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SherlockHKBMDKWJBESBBC01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BallDDHIKSSBJKOSWZBC00, author = {Catherine A. Ball and Kara Dolinski and Selina S. Dwight and Midori A. Harris and Laurie Issel{-}Tarver and Andrew Kasarskis and Charles R. Scafe and Gavin Sherlock and Gail Binkley and Heng Jin and Miroslava Kaloper and Sidney D. Orr and Mark Schroeder and Shuai Weng and Yan Zhu and David Botstein and J. Michael Cherry}, title = {Integrating functional genomic information into the Saccharomyces Genome Database}, journal = {Nucleic Acids Res.}, volume = {28}, number = {1}, pages = {77--80}, year = {2000}, url = {https://doi.org/10.1093/nar/28.1.77}, doi = {10.1093/NAR/28.1.77}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BallDDHIKSSBJKOSWZBC00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ChervitzHBDDHJMRRSSSWZCB99, author = {Stephen A. Chervitz and Erich T. Hester and Catherine A. Ball and Kara Dolinski and Selina S. Dwight and Midori A. Harris and Gail Juvik and Alice Malekian and Shannon Roberts and TaiYun Roe and Charles R. Scafe and Mark Schroeder and Gavin Sherlock and Shuai Weng and Yan Zhu and J. Michael Cherry and David Botstein}, title = {Using the Saccharomyces Genome Database {(SGD)} for analysis of protein similarities and structure}, journal = {Nucleic Acids Res.}, volume = {27}, number = {1}, pages = {74--78}, year = {1999}, url = {https://doi.org/10.1093/nar/27.1.74}, doi = {10.1093/NAR/27.1.74}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ChervitzHBDDHJMRRSSSWZCB99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/RheeWBGMFC99, author = {Seung Yon Rhee and Shuai Weng and Deverie K. Bongard{-}Pierce and Margarita Garcia{-}Hernandez and Alice Malekian and David J. Flanders and J. Michael Cherry}, title = {Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database}, journal = {Nucleic Acids Res.}, volume = {27}, number = {1}, pages = {79--84}, year = {1999}, url = {https://doi.org/10.1093/nar/27.1.79}, doi = {10.1093/NAR/27.1.79}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/RheeWBGMFC99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CherryABCDHJJRSWB98, author = {J. Michael Cherry and Caroline Adler and Catherine A. Ball and Stephen A. Chervitz and Selina S. Dwight and Erich T. Hester and Yankai Jia and Gail Juvik and TaiYun Roe and Mark Schroeder and Shuai Weng and David Botstein}, title = {{SGD:} Saccharomyces Genome Database}, journal = {Nucleic Acids Res.}, volume = {26}, number = {1}, pages = {73--79}, year = {1998}, url = {https://doi.org/10.1093/nar/26.1.73}, doi = {10.1093/NAR/26.1.73}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CherryABCDHJJRSWB98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/FlandersWPC98, author = {David J. Flanders and Shuai Weng and Fabien X. Petel and J. Michael Cherry}, title = {AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative}, journal = {Nucleic Acids Res.}, volume = {26}, number = {1}, pages = {80--84}, year = {1998}, url = {https://doi.org/10.1093/nar/26.1.80}, doi = {10.1093/NAR/26.1.80}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/FlandersWPC98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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