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ORCIDBibTeX records: Sharon M. Crook
@article{DBLP:journals/ploscb/BirgiolasHGGDC23,
author = {Justas Birgiolas and
Vergil Haynes and
Padraig Gleeson and
Richard C. Gerkin and
Suzanne W. Dietrich and
Sharon M. Crook},
title = {NeuroML-DB: Sharing and characterizing data-driven neuroscience models
described in NeuroML},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {3},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010941},
doi = {10.1371/JOURNAL.PCBI.1010941},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BirgiolasHGGDC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/CrookDMP20,
author = {Sharon M. Crook and
Andrew P. Davison and
Robert A. McDougal and
Hans Ekkehard Plesser},
title = {Editorial: Reproducibility and Rigour in Computational Neuroscience},
journal = {Frontiers Neuroinformatics},
volume = {14},
pages = {23},
year = {2020},
url = {https://doi.org/10.3389/fninf.2020.00023},
doi = {10.3389/FNINF.2020.00023},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fini/CrookDMP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/inroads/DietrichGBCBKO20,
author = {Suzanne W. Dietrich and
Don Goelman and
Jennifer Broatch and
Sharon M. Crook and
Becky Ball and
Kimberly Kobojek and
Jennifer Ortiz},
title = {Using formative assessment for improving pedagogy: reflections on
feedback informing database visualizations},
journal = {Inroads},
volume = {11},
number = {4},
pages = {27--34},
year = {2020},
url = {https://doi.org/10.1145/3430766},
doi = {10.1145/3430766},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/inroads/DietrichGBCBKO20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NealKNMKDACCCCA19,
author = {Maxwell Lewis Neal and
Matthias K{\"{o}}nig and
David P. Nickerson and
Goksel Misirli and
Reza Kalbasi and
Andreas Dr{\"{a}}ger and
Koray Atalag and
Vijayalakshmi Chelliah and
Michael T. Cooling and
Daniel L. Cook and
Sharon M. Crook and
Miguel de Alba and
Samuel H. Friedman and
Alan Garny and
John H. Gennari and
Padraig Gleeson and
Martin Golebiewski and
Michael Hucka and
Nick S. Juty and
Chris J. Myers and
Brett G. Olivier and
Herbert M. Sauro and
Martin Scharm and
Jacky L. Snoep and
Vasundra Tour{\'{e}} and
Anil Wipat and
Olaf Wolkenhauer and
Dagmar Waltemath},
title = {Harmonizing semantic annotations for computational models in biology},
journal = {Briefings Bioinform.},
volume = {20},
number = {2},
pages = {540--550},
year = {2019},
url = {https://doi.org/10.1093/bib/bby087},
doi = {10.1093/BIB/BBY087},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/NealKNMKDACCCCA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/FauconBC17,
author = {Philippe C. Faucon and
Parithi Balachandran and
Sharon M. Crook},
title = {SNaReSim: Synthetic Nanopore Read Simulator},
booktitle = {2017 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2017, Park City, UT, USA, August 23-26, 2017},
pages = {338--344},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ICHI.2017.98},
doi = {10.1109/ICHI.2017.98},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/FauconBC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acssc/SamavatLC16,
author = {Mohammad Samavat and
Dori Luli and
Sharon M. Crook},
editor = {Michael B. Matthews},
title = {Neuronal network models for sensory discrimination},
booktitle = {50th Asilomar Conference on Signals, Systems and Computers, {ACSSC}
2016, Pacific Grove, CA, USA, November 6-9, 2016},
pages = {1066--1073},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/ACSSC.2016.7869533},
doi = {10.1109/ACSSC.2016.7869533},
timestamp = {Wed, 16 Oct 2019 14:14:57 +0200},
biburl = {https://dblp.org/rec/conf/acssc/SamavatLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ficn/BergerC15,
author = {Sandra D. Berger and
Sharon M. Crook},
title = {Modeling the Influence of Ion Channels on Neuron Dynamics in Drosophila},
journal = {Frontiers Comput. Neurosci.},
volume = {9},
pages = {139},
year = {2015},
url = {https://doi.org/10.3389/fncom.2015.00139},
doi = {10.3389/FNCOM.2015.00139},
timestamp = {Sat, 23 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ficn/BergerC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcns/GardnerJBC15,
author = {Carl L. Gardner and
Jeremiah R. Jones and
Steven M. Baer and
Sharon M. Crook},
title = {Drift-diffusion simulation of the ephaptic effect in the triad synapse
of the retina},
journal = {J. Comput. Neurosci.},
volume = {38},
number = {1},
pages = {129--142},
year = {2015},
url = {https://doi.org/10.1007/s10827-014-0531-7},
doi = {10.1007/S10827-014-0531-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcns/GardnerJBC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/te/DietrichGBC15,
author = {Suzanne W. Dietrich and
Don Goelman and
Connie M. Borror and
Sharon M. Crook},
title = {An Animated Introduction to Relational Databases for Many Majors},
journal = {{IEEE} Trans. Educ.},
volume = {58},
number = {2},
pages = {81--89},
year = {2015},
url = {https://doi.org/10.1109/TE.2014.2326834},
doi = {10.1109/TE.2014.2326834},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/te/DietrichGBC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ssdbm/BirgiolasDCRZPA15,
author = {Justas Birgiolas and
Suzanne W. Dietrich and
Sharon M. Crook and
Ashwin Rajadesingan and
Chao Zhang and
Shriharsha Velugoti Penchala and
Veerasekhar Addepalli},
editor = {Amarnath Gupta and
Susan L. Rathbun},
title = {Ontology-assisted keyword search for NeuroML models},
booktitle = {Proceedings of the 27th International Conference on Scientific and
Statistical Database Management, {SSDBM} '15, La Jolla, CA, USA, June
29 - July 1, 2015},
pages = {37:1--37:6},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2791347.2791360},
doi = {10.1145/2791347.2791360},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ssdbm/BirgiolasDCRZPA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/VellaCCDGRSG14,
author = {Michael Vella and
Robert C. Cannon and
Sharon M. Crook and
Andrew P. Davison and
Gautham Ganapathy and
Hugh P. C. Robinson and
R. Angus Silver and
Padraig Gleeson},
title = {libNeuroML and PyLEMS: using Python to combine procedural and declarative
modeling approaches in computational neuroscience},
journal = {Frontiers Neuroinformatics},
volume = {8},
pages = {38},
year = {2014},
url = {https://doi.org/10.3389/fninf.2014.00038},
doi = {10.3389/FNINF.2014.00038},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fini/VellaCCDGRSG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/CannonGCGMPS14,
author = {Robert C. Cannon and
Padraig Gleeson and
Sharon M. Crook and
Gautham Ganapathy and
B{\'{o}}ris Marin and
Eugenio Piasini and
R. Angus Silver},
title = {{LEMS:} a language for expressing complex biological models in concise
and hierarchical form and its use in underpinning NeuroML 2},
journal = {Frontiers Neuroinformatics},
volume = {8},
pages = {79},
year = {2014},
url = {https://doi.org/10.3389/fninf.2014.00079},
doi = {10.3389/FNINF.2014.00079},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fini/CannonGCGMPS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/cn/Crook14,
author = {Sharon M. Crook},
editor = {Dieter Jaeger and
Ranu Jung},
title = {Model Reproducibility: Overview},
booktitle = {Encyclopedia of Computational Neuroscience},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-1-4614-7320-6\_763-1},
doi = {10.1007/978-1-4614-7320-6\_763-1},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/cn/Crook14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/cn/CrookGCVS14,
author = {Sharon M. Crook and
Padraig Gleeson and
Robert C. Cannon and
Michael Vella and
Angus Silver},
editor = {Dieter Jaeger and
Ranu Jung},
title = {NeuroML},
booktitle = {Encyclopedia of Computational Neuroscience},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-1-4614-7320-6\_96-1},
doi = {10.1007/978-1-4614-7320-6\_96-1},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/cn/CrookGCVS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/cn/GerkinTCK14,
author = {Richard C. Gerkin and
Shreejoy J. Tripathy and
Sharon M. Crook and
Jeanette Kotaleski},
editor = {Dieter Jaeger and
Ranu Jung},
title = {Databases and Data Repositories in Computational Neuroscience: Overview},
booktitle = {Encyclopedia of Computational Neuroscience},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-1-4614-7320-6\_780-1},
doi = {10.1007/978-1-4614-7320-6\_780-1},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/cn/GerkinTCK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcns/Herrera-ValdezMBRDC13,
author = {Marco A. Herrera{-}Valdez and
Erin C. McKiernan and
Sandra D. Berger and
Stefanie Ryglewski and
Carsten Duch and
Sharon M. Crook},
title = {Relating ion channel expression, bifurcation structure, and diverse
firing patterns in a model of an identified motor neuron},
journal = {J. Comput. Neurosci.},
volume = {34},
number = {2},
pages = {211--229},
year = {2013},
url = {https://doi.org/10.1007/s10827-012-0416-6},
doi = {10.1007/S10827-012-0416-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcns/Herrera-ValdezMBRDC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcns/KurianCJ11,
author = {Mini Kurian and
Sharon M. Crook and
Ranu Jung},
title = {Motoneuron model of self-sustained firing after spinal cord injury},
journal = {J. Comput. Neurosci.},
volume = {31},
number = {3},
pages = {625--645},
year = {2011},
url = {https://doi.org/10.1007/s10827-011-0324-1},
doi = {10.1007/S10827-011-0324-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcns/KurianCJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GleesonCCHBFMDRBBDS10,
author = {Padraig Gleeson and
Sharon M. Crook and
Robert C. Cannon and
Michael L. Hines and
Guy O. Billings and
Matteo Farinella and
Thomas M. Morse and
Andrew P. Davison and
Subhasis Ray and
Upinder S. Bhalla and
Simon R. Barnes and
Yoana D. Dimitrova and
Angus Silver},
title = {NeuroML: {A} Language for Describing Data Driven Models of Neurons
and Networks with a High Degree of Biological Detail},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {6},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000815},
doi = {10.1371/JOURNAL.PCBI.1000815},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GleesonCCHBFMDRBBDS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/sci/GunaySLMGCSSVABMLMKTMAF08,
author = {Cengiz G{\"{u}}nay and
Tomasz G. Smolinski and
William W. Lytton and
Thomas M. Morse and
Padraig Gleeson and
Sharon M. Crook and
Volker Steuber and
Angus Silver and
Horatiu Voicu and
Peter Andrews and
Hemant Bokil and
Hiren Maniar and
Catherine Loader and
Samar Mehta and
David Kleinfeld and
David J. Thomson and
Partha P. Mitra and
Gloster Aaron and
Jean{-}Marc Fellous},
editor = {Tomasz G. Smolinski and
Mariofanna G. Milanova and
Aboul Ella Hassanien},
title = {Computational Intelligence in Electrophysiology: Trends and Open Problems},
booktitle = {Applications of Computational Intelligence in Biology: Current Trends
and Open Problems},
series = {Studies in Computational Intelligence},
volume = {122},
pages = {325--359},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78534-7\_14},
doi = {10.1007/978-3-540-78534-7\_14},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/sci/GunaySLMGCSSVABMLMKTMAF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/CrookGHSS07,
author = {Sharon M. Crook and
Padraig Gleeson and
Fredrick W. Howell and
Joseph Svitak and
Angus Silver},
title = {MorphML: Level 1 of the NeuroML Standards for Neuronal Morphology
Data and Model Specification},
journal = {Neuroinformatics},
volume = {5},
number = {2},
pages = {96--104},
year = {2007},
url = {https://doi.org/10.1007/s12021-007-0003-6},
doi = {10.1007/S12021-007-0003-6},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ni/CrookGHSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/EatonCCJ04,
author = {Carrie Diaz Eaton and
Sharon M. Crook and
Graham I. Cummins and
Gwen A. Jacobs},
title = {Modeling ion channels from the cricket cercal sensory system},
journal = {Neurocomputing},
volume = {58-60},
pages = {409--415},
year = {2004},
url = {https://doi.org/10.1016/j.neucom.2004.01.074},
doi = {10.1016/J.NEUCOM.2004.01.074},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/EatonCCJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/QiC04,
author = {Weihong Qi and
Sharon M. Crook},
title = {Tools for neuroinformatic data exchange: an {XML} application for
neuronal morphology data},
journal = {Neurocomputing},
volume = {58-60},
pages = {1091--1095},
year = {2004},
url = {https://doi.org/10.1016/j.neucom.2004.01.171},
doi = {10.1016/J.NEUCOM.2004.01.171},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/QiC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/CumminsCDGJM03,
author = {Graham I. Cummins and
Sharon M. Crook and
Alexander G. Dimitrov and
T. Ganje and
Gwen A. Jacobs and
John P. Miller},
title = {Structural and biophysical mechanisms underlying dynamic sensitivity
of primary sensory interneurons in the cricket cercal sensory system},
journal = {Neurocomputing},
volume = {52-54},
pages = {45--52},
year = {2003},
url = {https://doi.org/10.1016/S0925-2312(02)00786-5},
doi = {10.1016/S0925-2312(02)00786-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/CumminsCDGJM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/CrookMJ02,
author = {Sharon M. Crook and
John P. Miller and
Gwen A. Jacobs},
title = {Modeling frequency encoding in the cricket cercal sensory system},
journal = {Neurocomputing},
volume = {44-46},
pages = {769--773},
year = {2002},
url = {https://doi.org/10.1016/S0925-2312(02)00470-8},
doi = {10.1016/S0925-2312(02)00470-8},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/CrookMJ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcns/CrookEB98,
author = {Sharon M. Crook and
Bard Ermentrout and
James M. Bower},
title = {Dendritic and Synaptic Effects in Systems of Coupled Cortical Oscillators},
journal = {J. Comput. Neurosci.},
volume = {5},
number = {3},
pages = {315--329},
year = {1998},
url = {https://doi.org/10.1023/A:1008839112707},
doi = {10.1023/A:1008839112707},
timestamp = {Thu, 16 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcns/CrookEB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/CrookEB98,
author = {Sharon M. Crook and
Bard Ermentrout and
James M. Bower},
title = {Spike Frequency Adaptation Affects the Synchronization Properties
of Networks of Cortical Oscillator},
journal = {Neural Comput.},
volume = {10},
number = {4},
pages = {837--854},
year = {1998},
url = {https://doi.org/10.1162/089976698300017511},
doi = {10.1162/089976698300017511},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/CrookEB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcns/CrookEVB97,
author = {Sharon M. Crook and
Bard Ermentrout and
Michael C. Vanier and
James M. Bower},
title = {The Role of Axonal Delay in the Synchronization of Networks of Coupled
Cortical Oscillators},
journal = {J. Comput. Neurosci.},
volume = {4},
number = {2},
pages = {161--172},
year = {1997},
url = {https://doi.org/10.1023/A:1008843412952},
doi = {10.1023/A:1008843412952},
timestamp = {Thu, 16 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcns/CrookEVB97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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