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BibTeX records: Meritxell Bach Cuadra
@article{DBLP:journals/corr/abs-2403-15103, author = {Vladyslav Zalevskyi and Thomas Sanchez and Margaux Roulet and Jordina Aviles Verdera and Jana Hutter and Hamza Kebiri and Meritxell Bach Cuadra}, title = {Improving cross-domain brain tissue segmentation in fetal {MRI} with synthetic data}, journal = {CoRR}, volume = {abs/2403.15103}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2403.15103}, doi = {10.48550/ARXIV.2403.15103}, eprinttype = {arXiv}, eprint = {2403.15103}, timestamp = {Thu, 11 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2403-15103.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/PayetteLDLJSXMLPWPXZDFWRKKKGTOVLABB23, author = {Kelly Payette and Hongwei Bran Li and Priscille de Dumast and Roxane Licandro and Hui Ji and Md Mahfuzur Rahman Siddiquee and Daguang Xu and Andriy Myronenko and Hao Liu and Yuchen Pei and Lisheng Wang and Ying Peng and Juanying Xie and Huiquan Zhang and Guiming Dong and Hao Fu and Guotai Wang and ZunHyan Rieu and Donghyeon Kim and Hyun Gi Kim and Davood Karimi and Ali Gholipour and Helena R. Torres and Bruno Oliveira and Jo{\~{a}}o L. Vila{\c{c}}a and Yang Lin and Netanell Avisdris and Ori Ben{-}Zvi and Dafna Ben{-}Bashat and Lucas Fidon and Michael Aertsen and Tom Vercauteren and Daniel Sobotka and Georg Langs and Mireia Aleny{\`{a}} and Maria Inmaculada Villanueva and Oscar Camara and Bella Specktor{-}Fadida and Leo Joskowicz and Liao Weibin and Lv Yi and Xuesong Li and Moona Mazher and Abdul Qayyum and Domenec Puig and Hamza Kebiri and Zelin Zhang and Xinyi Xu and Dan Wu and KuanLun Liao and YiXuan Wu and JinTai Chen and Yunzhi Xu and Li Zhao and Lana Vasung and Bjoern H. Menze and Meritxell Bach Cuadra and Andr{\'{a}}s Jakab}, title = {Fetal brain tissue annotation and segmentation challenge results}, journal = {Medical Image Anal.}, volume = {88}, pages = {102833}, year = {2023}, url = {https://doi.org/10.1016/j.media.2023.102833}, doi = {10.1016/J.MEDIA.2023.102833}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/PayetteLDLJSXMLPWPXZDFWRKKKGTOVLABB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/MartinezCJ23, author = {Cristina Sainz Martinez and Meritxell Bach Cuadra and Jo{\~{a}}o Jorge}, title = {BigBrain-MR: a new digital phantom with anatomically-realistic magnetic resonance properties at 100-{\(\mathrm{\mu}\)}m resolution for magnetic resonance methods development}, journal = {NeuroImage}, volume = {273}, pages = {120074}, year = {2023}, url = {https://doi.org/10.1016/j.neuroimage.2023.120074}, doi = {10.1016/J.NEUROIMAGE.2023.120074}, timestamp = {Wed, 17 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/MartinezCJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/NotoMTAESCHR23, author = {Tommaso Di Noto and Guillaume Marie and S{\'{e}}bastien Tourbier and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Oscar Esteban and Guillaume Saliou and Meritxell Bach Cuadra and Patric Hagmann and Jonas Richiardi}, title = {Towards Automated Brain Aneurysm Detection in {TOF-MRA:} Open Data, Weak Labels, and Anatomical Knowledge}, journal = {Neuroinformatics}, volume = {21}, number = {1}, pages = {21--34}, year = {2023}, url = {https://doi.org/10.1007/s12021-022-09597-0}, doi = {10.1007/S12021-022-09597-0}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ni/NotoMTAESCHR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/DumastC23, author = {Priscille de Dumast and Meritxell Bach Cuadra}, title = {Domain Generalization in Fetal Brain {MRI} Segmentation with Multi-Reconstruction Augmentation}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230402}, doi = {10.1109/ISBI53787.2023.10230402}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/DumastC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/LachlerLUCP23, author = {Kay L{\"{a}}chler and H{\'{e}}l{\`{e}}ne Lajous and Michael Unser and Meritxell Bach Cuadra and Pol del Aguila Pla}, title = {Self-Supervised Isotropic Superresolution Fetal Brain {MRI}}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230522}, doi = {10.1109/ISBI53787.2023.10230522}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/isbi/LachlerLUCP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/MolchanovaRMRMGGGC23, author = {Nataliia Molchanova and Vatsal Raina and Andrey Malinin and Francesco La Rosa and Henning M{\"{u}}ller and Mark J. F. Gales and Cristina Granziera and Mara Graziani and Meritxell Bach Cuadra}, title = {Novel Structural-Scale Uncertainty Measures and Error Retention Curves: Application to Multiple Sclerosis}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230563}, doi = {10.1109/ISBI53787.2023.10230563}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/isbi/MolchanovaRMRMGGGC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/RainaMGMMCG23, author = {Vatsal Raina and Nataliia Molchanova and Mara Graziani and Andrey Malinin and Henning M{\"{u}}ller and Meritxell Bach Cuadra and Mark J. F. Gales}, title = {Tackling Bias in the Dice Similarity Coefficient: Introducing {NDSC} for White Matter Lesion Segmentation}, booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2023, Cartagena, Colombia, April 18-21, 2023}, pages = {1--5}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/ISBI53787.2023.10230755}, doi = {10.1109/ISBI53787.2023.10230755}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/isbi/RainaMGMMCG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/SanchezEGEC23, author = {Thomas Sanchez and Oscar Esteban and Yvan Gomez and Elisenda Eixarch and Meritxell Bach Cuadra}, editor = {Daphna Link{-}Sourani and Esra Abaci Turk and Christopher K. Macgowan and Jana Hutter and Andrew Melbourne and Roxane Licandro}, title = {FetMRQC: Automated Quality Control for Fetal Brain {MRI}}, booktitle = {Perinatal, Preterm and Paediatric Image Analysis - 8th International Workshop, {PIPPI} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October 12, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14246}, pages = {3--16}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-45544-5\_1}, doi = {10.1007/978-3-031-45544-5\_1}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/SanchezEGEC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KebiriGLVKC23, author = {Hamza Kebiri and Ali Gholipour and Rizhong Lin and Lana Vasung and Davood Karimi and Meritxell Bach Cuadra}, editor = {Hayit Greenspan and Anant Madabhushi and Parvin Mousavi and Septimiu Salcudean and James Duncan and Tanveer F. Syeda{-}Mahmood and Russell H. Taylor}, title = {Robust Estimation of the Microstructure of the Early Developing Brain Using Deep Learning}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {14226}, pages = {293--303}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-43990-2\_28}, doi = {10.1007/978-3-031-43990-2\_28}, timestamp = {Thu, 05 Oct 2023 18:00:39 +0200}, biburl = {https://dblp.org/rec/conf/miccai/KebiriGLVKC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DumastSLC23, author = {Priscille de Dumast and Thomas Sanchez and H{\'{e}}l{\`{e}}ne Lajous and Meritxell Bach Cuadra}, editor = {Hayit Greenspan and Anant Madabhushi and Parvin Mousavi and Septimiu Salcudean and James Duncan and Tanveer F. Syeda{-}Mahmood and Russell H. Taylor}, title = {Simulation-Based Parameter Optimization for Fetal Brain {MRI} Super-Resolution Reconstruction}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {14226}, pages = {336--346}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-43990-2\_32}, doi = {10.1007/978-3-031-43990-2\_32}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/DumastSLC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2302-05432, author = {Vatsal Raina and Nataliia Molchanova and Mara Graziani and Andrey Malinin and Henning M{\"{u}}ller and Meritxell Bach Cuadra and Mark J. F. Gales}, title = {Tackling Bias in the Dice Similarity Coefficient: Introducing nDSC for White Matter Lesion Segmentation}, journal = {CoRR}, volume = {abs/2302.05432}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2302.05432}, doi = {10.48550/ARXIV.2302.05432}, eprinttype = {arXiv}, eprint = {2302.05432}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2302-05432.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2304-05879, author = {Thomas Sanchez and Oscar Esteban and Yvan Gomez and Elisenda Eixarch and Meritxell Bach Cuadra}, title = {FetMRQC: Automated Quality Control for fetal brain {MRI}}, journal = {CoRR}, volume = {abs/2304.05879}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2304.05879}, doi = {10.48550/ARXIV.2304.05879}, eprinttype = {arXiv}, eprint = {2304.05879}, timestamp = {Thu, 20 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2304-05879.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-02223, author = {Hamza Kebiri and Ali Gholipour and Meritxell Bach Cuadra and Davood Karimi}, title = {Direct segmentation of brain white matter tracts in diffusion {MRI}}, journal = {CoRR}, volume = {abs/2307.02223}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.02223}, doi = {10.48550/ARXIV.2307.02223}, eprinttype = {arXiv}, eprint = {2307.02223}, timestamp = {Mon, 10 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-02223.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2311-04780, author = {Thomas Sanchez and Oscar Esteban and Yvan Gomez and Alexandre Pron and M{\'{e}}riam Koob and Vincent Dunet and Nadine Girard and Andr{\'{a}}s Jakab and Elisenda Eixarch and Guillaume Auzias and Meritxell Bach Cuadra}, title = {FetMRQC: an open-source machine learning framework for multi-centric fetal brain {MRI} quality control}, journal = {CoRR}, volume = {abs/2311.04780}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2311.04780}, doi = {10.48550/ARXIV.2311.04780}, eprinttype = {arXiv}, eprint = {2311.04780}, timestamp = {Thu, 16 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2311-04780.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2311-08931, author = {Nataliia Molchanova and Vatsal Raina and Andrey Malinin and Francesco La Rosa and Adrien Depeursinge and Mark J. F. Gales and Cristina Granziera and Henning M{\"{u}}ller and Mara Graziani and Meritxell Bach Cuadra}, title = {Structural-Based Uncertainty in Deep Learning Across Anatomical Scales: Analysis in White Matter Lesion Segmentation}, journal = {CoRR}, volume = {abs/2311.08931}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2311.08931}, doi = {10.48550/ARXIV.2311.08931}, eprinttype = {arXiv}, eprint = {2311.08931}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2311-08931.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2312-14773, author = {Rizhong Lin and Ali Gholipour and Jean{-}Philippe Thiran and Davood Karimi and Hamza Kebiri and Meritxell Bach Cuadra}, title = {Cross-Age and Cross-Site Domain Shift Impacts on Deep Learning-Based White Matter Fiber Estimation in Newborn and Baby Brains}, journal = {CoRR}, volume = {abs/2312.14773}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2312.14773}, doi = {10.48550/ARXIV.2312.14773}, eprinttype = {arXiv}, eprint = {2312.14773}, timestamp = {Wed, 10 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2312-14773.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jossw/TourbierQGAMGSW22, author = {S{\'{e}}bastien Tourbier and Joan Ru{\'{e}} Queralt and Katharina Glomb and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Emeline Mullier and Alessandra Griffa and Mikkel Sch{\"{o}}ttner and Jonathan Wirsich and Mustafa Anil Tuncel and Jakub Jancovic and Meritxell Bach Cuadra and Patric Hagmann}, title = {Connectome Mapper 3: {A} Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping}, journal = {J. Open Source Softw.}, volume = {7}, number = {74}, pages = {4248}, year = {2022}, url = {https://doi.org/10.21105/joss.04248}, doi = {10.21105/JOSS.04248}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jossw/TourbierQGAMGSW22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/DumastKPJLC22, author = {Priscille de Dumast and Hamza Kebiri and Kelly Payette and Andr{\'{a}}s Jakab and H{\'{e}}l{\`{e}}ne Lajous and Meritxell Bach Cuadra}, title = {Synthetic Magnetic Resonance Images for Domain Adaptation: Application to Fetal Brain Tissue Segmentation}, booktitle = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2022, Kolkata, India, March 28-31, 2022}, pages = {1--5}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/ISBI52829.2022.9761451}, doi = {10.1109/ISBI52829.2022.9761451}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/DumastKPJLC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KebiriGAYJCC22, author = {Hamza Kebiri and Gabriel Girard and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Thomas Yu and Andr{\'{a}}s Jakab and Erick Jorge Canales{-}Rodr{\'{\i}}guez and Meritxell Bach Cuadra}, editor = {Suheyla Cetin Karayumak and Daan Christiaens and Matteo Figini and Pamela Guevara and Tomasz Pieciak and Elizabeth Powell and Francois Rheault}, title = {Slice Estimation in Diffusion {MRI} of Neonatal and Fetal Brains in Image and Spherical Harmonics Domains Using Autoencoders}, booktitle = {Computational Diffusion {MRI} - 13th International Workshop, {CDMRI} 2022, Held in Conjunction with {MICCAI} 2022, Singapore, Singapore, September 22, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13722}, pages = {3--13}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-21206-2\_1}, doi = {10.1007/978-3-031-21206-2\_1}, timestamp = {Thu, 08 Dec 2022 15:05:30 +0100}, biburl = {https://dblp.org/rec/conf/miccai/KebiriGAYJCC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/TaymourtashKSNT22, author = {Athena Taymourtash and Hamza Kebiri and Ernst Schwartz and Karl{-}Heinz Nenning and S{\'{e}}bastien Tourbier and Gregor Kasprian and Daniela Prayer and Meritxell Bach Cuadra and Georg Langs}, editor = {Linwei Wang and Qi Dou and P. Thomas Fletcher and Stefanie Speidel and Shuo Li}, title = {Spatio-Temporal Motion Correction and Iterative Reconstruction of In-Utero Fetal fMRI}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part {VI}}, series = {Lecture Notes in Computer Science}, volume = {13436}, pages = {603--612}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-16446-0\_57}, doi = {10.1007/978-3-031-16446-0\_57}, timestamp = {Tue, 13 Dec 2022 14:39:06 +0100}, biburl = {https://dblp.org/rec/conf/miccai/TaymourtashKSNT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2201-07463, author = {Francesco La Rosa and Maxence Wynen and Omar Al{-}Louzi and Erin S. Beck and Till Huelnhagen and Pietro Maggi and Jean{-}Philippe Thiran and Tobias Kober and Russell T. Shinohara and Pascal Sati and Daniel S. Reich and Cristina Granziera and Martina Absinta and Meritxell Bach Cuadra}, title = {Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: emerging machine learning techniques and future avenues}, journal = {CoRR}, volume = {abs/2201.07463}, year = {2022}, url = {https://arxiv.org/abs/2201.07463}, eprinttype = {arXiv}, eprint = {2201.07463}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2201-07463.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2201-12535, author = {Thomas Yu and Tom Hilbert and Gian Franco Piredda and Arun Joseph and Gabriele Bonanno and Salim Zenkhri and Patrick Omoumi and Meritxell Bach Cuadra and Erick Jorge Canales{-}Rodr{\'{\i}}guez and Tobias Kober and Jean{-}Philippe Thiran}, title = {Validation and Generalizability of Self-Supervised Image Reconstruction Methods for Undersampled {MRI}}, journal = {CoRR}, volume = {abs/2201.12535}, year = {2022}, url = {https://arxiv.org/abs/2201.12535}, eprinttype = {arXiv}, eprint = {2201.12535}, timestamp = {Wed, 02 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2201-12535.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2204-09573, author = {Kelly Payette and Hongwei Li and Priscille de Dumast and Roxane Licandro and Hui Ji and Md Mahfuzur Rahman Siddiquee and Daguang Xu and Andriy Myronenko and Hao Liu and Yuchen Pei and Lisheng Wang and Ying Peng and Juanying Xie and Huiquan Zhang and Guiming Dong and Hao Fu and Guotai Wang and ZunHyan Rieu and Donghyeon Kim and Hyun Gi Kim and Davood Karimi and Ali Gholipour and Helena R. Torres and Bruno Oliveira and Jo{\~{a}}o L. Vila{\c{c}}a and Yang Lin and Netanell Avisdris and Ori Ben{-}Zvi and Dafna Ben{-}Bashat and Lucas Fidon and Michael Aertsen and Tom Vercauteren and Daniel Sobotka and Georg Langs and Mireia Aleny{\`{a}} and Maria Inmaculada Villanueva and Oscar Camara and Bella Specktor{-}Fadida and Leo Joskowicz and Weibin Liao and Lv Yi and Xuesong Li and Moona Mazher and Abdul Qayyum and Domenec Puig and Hamza Kebiri and Zelin Zhang and Xinyi Xu and Dan Wu and KuanLun Liao and YiXuan Wu and JinTai Chen and Yunzhi Xu and Li Zhao and Lana Vasung and Bjoern H. Menze and Meritxell Bach Cuadra and Andr{\'{a}}s Jakab}, title = {Fetal Brain Tissue Annotation and Segmentation Challenge Results}, journal = {CoRR}, volume = {abs/2204.09573}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2204.09573}, doi = {10.48550/ARXIV.2204.09573}, eprinttype = {arXiv}, eprint = {2204.09573}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2204-09573.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2206-15407, author = {Andrey Malinin and Andreas Athanasopoulos and Muhamed Barakovic and Meritxell Bach Cuadra and Mark J. F. Gales and Cristina Granziera and Mara Graziani and Nikolay Kartashev and Konstantinos Kyriakopoulos and Po{-}Jui Lu and Nataliia Molchanova and Antonis Nikitakis and Vatsal Raina and Francesco La Rosa and Eli Sivena and Vasileios Tsarsitalidis and Efi Tsompopoulou and Elena Volf}, title = {Shifts 2.0: Extending The Dataset of Real Distributional Shifts}, journal = {CoRR}, volume = {abs/2206.15407}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2206.15407}, doi = {10.48550/ARXIV.2206.15407}, eprinttype = {arXiv}, eprint = {2206.15407}, timestamp = {Mon, 04 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2206-15407.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2210-09698, author = {Tommaso Di Noto and Meritxell Bach Cuadra and Chirine Atat and Eduardo Gamito Teiga and Monika Hegi and Andreas Hottinger and Patric Hagmann and Jonas Richiardi}, title = {Transfer learning with weak labels from radiology reports: application to glioma change detection}, journal = {CoRR}, volume = {abs/2210.09698}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2210.09698}, doi = {10.48550/ARXIV.2210.09698}, eprinttype = {arXiv}, eprint = {2210.09698}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2210-09698.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-04825, author = {Nataliia Molchanova and Vatsal Raina and Andrey Malinin and Francesco La Rosa and Henning M{\"{u}}ller and Mark J. F. Gales and Cristina Granziera and Mara Graziani and Meritxell Bach Cuadra}, title = {Novel structural-scale uncertainty measures and error retention curves: application to multiple sclerosis}, journal = {CoRR}, volume = {abs/2211.04825}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.04825}, doi = {10.48550/ARXIV.2211.04825}, eprinttype = {arXiv}, eprint = {2211.04825}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-04825.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-06502, author = {Kay L{\"{a}}chler and H{\'{e}}l{\`{e}}ne Lajous and Michael Unser and Meritxell Bach Cuadra and Pol del Aguila Pla}, title = {Self-Supervised Isotropic Superresolution Fetal Brain {MRI}}, journal = {CoRR}, volume = {abs/2211.06502}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.06502}, doi = {10.48550/ARXIV.2211.06502}, eprinttype = {arXiv}, eprint = {2211.06502}, timestamp = {Wed, 16 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-06502.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-14282, author = {Priscille de Dumast and Meritxell Bach Cuadra}, title = {Domain generalization in fetal brain {MRI} segmentation {\textbackslash}{\textbackslash}with multi-reconstruction augmentation}, journal = {CoRR}, volume = {abs/2211.14282}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.14282}, doi = {10.48550/ARXIV.2211.14282}, eprinttype = {arXiv}, eprint = {2211.14282}, timestamp = {Wed, 30 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-14282.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/RosaYBTGC21, author = {Francesco La Rosa and Thomas Yu and Germ{\'{a}}n Barquero and Jean{-}Philippe Thiran and Cristina Granziera and Meritxell Bach Cuadra}, title = {{MPRAGE} to {MP2RAGE} {UNI} translation via generative adversarial network improves the automatic tissue and lesion segmentation in multiple sclerosis patients}, journal = {Comput. Biol. Medicine}, volume = {132}, pages = {104297}, year = {2021}, url = {https://doi.org/10.1016/j.compbiomed.2021.104297}, doi = {10.1016/J.COMPBIOMED.2021.104297}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cbm/RosaYBTGC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/YuCPPHGWBCGKT21, author = {Thomas Yu and Erick Jorge Canales{-}Rodr{\'{\i}}guez and Marco Pizzolato and Gian Franco Piredda and Tom Hilbert and Elda Fischi Gomez and Matthias Weigel and Muhamed Barakovic and Meritxell Bach Cuadra and Cristina Granziera and Tobias Kober and Jean{-}Philippe Thiran}, title = {Model-informed machine learning for multi-component {T2} relaxometry}, journal = {Medical Image Anal.}, volume = {69}, pages = {101940}, year = {2021}, url = {https://doi.org/10.1016/j.media.2020.101940}, doi = {10.1016/J.MEDIA.2020.101940}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/YuCPPHGWBCGKT21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KebiriLAGCTPLFJ21, author = {Hamza Kebiri and H{\'{e}}l{\`{e}}ne Lajous and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Gabriel Girard and Erick Jorge Canales{-}Rodr{\'{\i}}guez and S{\'{e}}bastien Tourbier and Marco Pizzolato and Jean{-}Baptiste Ledoux and Eleonora Fornari and Andr{\'{a}}s Jakab and Meritxell Bach Cuadra}, editor = {Suheyla Cetin Karayumak and Daan Christiaens and Matteo Figini and Pamela Guevara and Noemi G. Gyori and Vishwesh Nath and Tomasz Pieciak}, title = {Quantitative Evaluation of Enhanced Multi-plane Clinical Fetal Diffusion {MRI} with a Crossing-Fiber Phantom}, booktitle = {Computational Diffusion {MRI} - 12th International Workshop, {CDMRI} 2021, Held in Conjunction with {MICCAI} 2021, Strasbourg, France, October 1, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13006}, pages = {12--22}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87615-9\_2}, doi = {10.1007/978-3-030-87615-9\_2}, timestamp = {Wed, 03 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/KebiriLAGCTPLFJ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LajousHRTDAYKLH21, author = {H{\'{e}}l{\`{e}}ne Lajous and Tom Hilbert and Christopher W. Roy and S{\'{e}}bastien Tourbier and Priscille de Dumast and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Thomas Yu and Hamza Kebiri and Jean{-}Baptiste Ledoux and Patric Hagmann and Reto Meuli and Vincent Dunet and M{\'{e}}riam Koob and Matthias Stuber and Tobias Kober and Meritxell Bach Cuadra}, editor = {Carole H. Sudre and Roxane Licandro and Christian F. Baumgartner and Andrew Melbourne and Adrian V. Dalca and Jana Hutter and Ryutaro Tanno and Esra Abaci Turk and Koen Van Leemput and Jordina Torrents{-}Barrena and William M. Wells III and Christopher K. Macgowan}, title = {Simulated Half-Fourier Acquisitions Single-shot Turbo Spin Echo {(HASTE)} of the Fetal Brain: Application to Super-Resolution Reconstruction}, booktitle = {Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis - 3rd International Workshop, {UNSURE} 2021, and 6th International Workshop, {PIPPI} 2021 Held in Conjunction with {MICCAI} 2021, Strasbourg, France, October 1, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12959}, pages = {157--167}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87735-4\_15}, doi = {10.1007/978-3-030-87735-4\_15}, timestamp = {Wed, 15 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/LajousHRTDAYKLH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DumastKADKC21, author = {Priscille de Dumast and Hamza Kebiri and Chirine Atat and Vincent Dunet and M{\'{e}}riam Koob and Meritxell Bach Cuadra}, editor = {Carole H. Sudre and Roxane Licandro and Christian F. Baumgartner and Andrew Melbourne and Adrian V. Dalca and Jana Hutter and Ryutaro Tanno and Esra Abaci Turk and Koen Van Leemput and Jordina Torrents{-}Barrena and William M. Wells III and Christopher K. Macgowan}, title = {Segmentation of the Cortical Plate in Fetal Brain {MRI} with a Topological Loss}, booktitle = {Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis - 3rd International Workshop, {UNSURE} 2021, and 6th International Workshop, {PIPPI} 2021 Held in Conjunction with {MICCAI} 2021, Strasbourg, France, October 1, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12959}, pages = {200--209}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87735-4\_19}, doi = {10.1007/978-3-030-87735-4\_19}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/DumastKADKC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pkdd/NotoATHHCHR21, author = {Tommaso Di Noto and Chirine Atat and Eduardo Gamito Teiga and Monika Hegi and Andreas Hottinger and Meritxell Bach Cuadra and Patric Hagmann and Jonas Richiardi}, editor = {Michael Kamp and Irena Koprinska and Adrien Bibal and Tassadit Bouadi and Beno{\^{\i}}t Fr{\'{e}}nay and Luis Gal{\'{a}}rraga and Jos{\'{e}} Oramas and Linara Adilova and Yamuna Krishnamurthy and Bo Kang and Christine Largeron and Jefrey Lijffijt and Tiphaine Viard and Pascal Welke and Massimiliano Ruocco and Erlend Aune and Claudio Gallicchio and Gregor Schiele and Franz Pernkopf and Michaela Blott and Holger Fr{\"{o}}ning and G{\"{u}}nther Schindler and Riccardo Guidotti and Anna Monreale and Salvatore Rinzivillo and Przemyslaw Biecek and Eirini Ntoutsi and Mykola Pechenizkiy and Bodo Rosenhahn and Christopher L. Buckley and Daniela Cialfi and Pablo Lanillos and Maxwell Ramstead and Tim Verbelen and Pedro M. Ferreira and Giuseppina Andresini and Donato Malerba and Ib{\'{e}}ria Medeiros and Philippe Fournier{-}Viger and M. Saqib Nawaz and Sebasti{\'{a}}n Ventura and Meng Sun and Min Zhou and Valerio Bitetta and Ilaria Bordino and Andrea Ferretti and Francesco Gullo and Giovanni Ponti and Lorenzo Severini and Rita P. Ribeiro and Jo{\~{a}}o Gama and Ricard Gavald{\`{a}} and Lee A. D. Cooper and Naghmeh Ghazaleh and Jonas Richiardi and Damian Roqueiro and Diego Saldana Miranda and Konstantinos Sechidis and Guilherme Gra{\c{c}}a}, title = {Diagnostic Surveillance of High-Grade Gliomas: Towards Automated Change Detection Using Radiology Report Classification}, booktitle = {Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of {ECML} {PKDD} 2021, Virtual Event, September 13-17, 2021, Proceedings, Part {II}}, series = {Communications in Computer and Information Science}, volume = {1525}, pages = {423--436}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-93733-1\_30}, doi = {10.1007/978-3-030-93733-1\_30}, timestamp = {Tue, 15 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/pkdd/NotoATHHCHR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2103-06168, author = {Tommaso Di Noto and Guillaume Marie and S{\'{e}}bastien Tourbier and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Oscar Esteban and Guillaume Saliou and Meritxell Bach Cuadra and Patric Hagmann and Jonas Richiardi}, title = {Weak labels and anatomical knowledge: making deep learning practical for intracranial aneurysm detection in {TOF-MRA}}, journal = {CoRR}, volume = {abs/2103.06168}, year = {2021}, url = {https://arxiv.org/abs/2103.06168}, eprinttype = {arXiv}, eprint = {2103.06168}, timestamp = {Tue, 16 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2103-06168.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2109-03624, author = {H{\'{e}}l{\`{e}}ne Lajous and Christopher W. Roy and Tom Hilbert and Priscille de Dumast and S{\'{e}}bastien Tourbier and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and J{\'{e}}r{\^{o}}me Yerly and Thomas Yu and Hamza Kebiri and Kelly Payette and Jean{-}Baptiste Ledoux and Reto Meuli and Patric Hagmann and Andr{\'{a}}s Jakab and Vincent Dunet and M{\'{e}}riam Koob and Tobias Kober and Matthias Stuber and Meritxell Bach Cuadra}, title = {FaBiAN: {A} Fetal Brain magnetic resonance Acquisition Numerical phantom}, journal = {CoRR}, volume = {abs/2109.03624}, year = {2021}, url = {https://arxiv.org/abs/2109.03624}, eprinttype = {arXiv}, eprint = {2109.03624}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2109-03624.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2111-04737, author = {Priscille de Dumast and Hamza Kebiri and Kelly Payette and Andr{\'{a}}s Jakab and H{\'{e}}l{\`{e}}ne Lajous and Meritxell Bach Cuadra}, title = {Synthetic magnetic resonance images for domain adaptation: Application to fetal brain tissue segmentation}, journal = {CoRR}, volume = {abs/2111.04737}, year = {2021}, url = {https://arxiv.org/abs/2111.04737}, eprinttype = {arXiv}, eprint = {2111.04737}, timestamp = {Wed, 10 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2111-04737.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2111-11394, author = {Athena Taymourtash and Hamza Kebiri and S{\'{e}}bastien Tourbier and Ernst Schwartz and Karl{-}Heinz Nenning and Roxane Licandro and Daniel Sobotka and H{\'{e}}l{\`{e}}ne Lajous and Priscille de Dumast and Meritxell Bach Cuadra and Georg Langs}, title = {4D iterative reconstruction of brain fMRI in the moving fetus}, journal = {CoRR}, volume = {abs/2111.11394}, year = {2021}, url = {https://arxiv.org/abs/2111.11394}, eprinttype = {arXiv}, eprint = {2111.11394}, timestamp = {Fri, 26 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2111-11394.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/DeprezPCECHDTRC20, author = {Maria Deprez and Anthony Price and Daan Christiaens and Georgia Lockwood Estrin and Lucilio Cordero{-}Grande and Jana Hutter and Alessandro Daducci and Jacques{-}Donald Tournier and Mary A. Rutherford and Serena J. Counsell and Meritxell Bach Cuadra and Joseph V. Hajnal}, title = {Higher Order Spherical Harmonics Reconstruction of Fetal Diffusion {MRI} With Intensity Correction}, journal = {{IEEE} Trans. Medical Imaging}, volume = {39}, number = {4}, pages = {1104--1113}, year = {2020}, url = {https://doi.org/10.1109/TMI.2019.2943565}, doi = {10.1109/TMI.2019.2943565}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/DeprezPCECHDTRC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/NotoMTASCHR20, author = {Tommaso Di Noto and Guillaume Marie and S{\'{e}}bastien Tourbier and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Guillaume Saliou and Meritxell Bach Cuadra and Patric Hagmann and Jonas Richiardi}, editor = {Seyed Mostafa Kia and Hassan Mohy{-}ud{-}Din and Ahmed Abdulkadir and Cher Bass and Mohamad Habes and Jane Maryam Rondina and Chantal M. W. Tax and Hongzhi Wang and Thomas Wolfers and Saima Rathore and Madhura Ingalhalikar}, title = {An Anatomically-Informed 3D {CNN} for Brain Aneurysm Classification with Weak Labels}, booktitle = {Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology - Third International Workshop, {MLCN} 2020, and Second International Workshop, {RNO-AI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 4-8, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12449}, pages = {56--66}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-66843-3\_6}, doi = {10.1007/978-3-030-66843-3\_6}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/NotoMTASCHR20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LajousHRTDYTLPH20, author = {H{\'{e}}l{\`{e}}ne Lajous and Tom Hilbert and Christopher W. Roy and S{\'{e}}bastien Tourbier and Priscille de Dumast and Thomas Yu and Jean{-}Philippe Thiran and Jean{-}Baptiste Ledoux and Davide Piccini and Patric Hagmann and Reto Meuli and Tobias Kober and Matthias Stuber and Ruud B. van Heeswijk and Meritxell Bach Cuadra}, editor = {Anne L. Martel and Purang Abolmaesumi and Danail Stoyanov and Diana Mateus and Maria A. Zuluaga and S. Kevin Zhou and Daniel Racoceanu and Leo Joskowicz}, title = {{T2} Mapping from Super-Resolution-Reconstructed Clinical Fast Spin Echo Magnetic Resonance Acquisitions}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {12262}, pages = {114--124}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59713-9\_12}, doi = {10.1007/978-3-030-59713-9\_12}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/LajousHRTDYTLPH20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/RosaBATRSC20, author = {Francesco La Rosa and Erin S. Beck and Ahmed Abdulkadir and Jean{-}Philippe Thiran and Daniel S. Reich and Pascal Sati and Meritxell Bach Cuadra}, editor = {Anne L. Martel and Purang Abolmaesumi and Danail Stoyanov and Diana Mateus and Maria A. Zuluaga and S. Kevin Zhou and Daniel Racoceanu and Leo Joskowicz}, title = {Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T {MRI}}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part {IV}}, series = {Lecture Notes in Computer Science}, volume = {12264}, pages = {584--593}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59719-1\_57}, doi = {10.1007/978-3-030-59719-1\_57}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/RosaBATRSC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2008-06780, author = {Francesco La Rosa and Erin S. Beck and Ahmed Abdulkadir and Jean{-}Philippe Thiran and Daniel S. Reich and Pascal Sati and Meritxell Bach Cuadra}, title = {Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T {MRI}}, journal = {CoRR}, volume = {abs/2008.06780}, year = {2020}, url = {https://arxiv.org/abs/2008.06780}, eprinttype = {arXiv}, eprint = {2008.06780}, timestamp = {Fri, 21 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2008-06780.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2010-12391, author = {Priscille de Dumast and Hamza Kebiri and Chirine Atat and Vincent Dunet and M{\'{e}}riam Koob and Meritxell Bach Cuadra}, title = {Segmentation of the cortical plate in fetal brain {MRI} with a topological loss}, journal = {CoRR}, volume = {abs/2010.12391}, year = {2020}, url = {https://arxiv.org/abs/2010.12391}, eprinttype = {arXiv}, eprint = {2010.12391}, timestamp = {Tue, 27 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2010-12391.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2010-15526, author = {Kelly Payette and Priscille de Dumast and Hamza Kebiri and Ivan Ezhov and Johannes C. Paetzold and Suprosanna Shit and Asim Iqbal and Romesa Khan and Raimund Kottke and Patrice Grehten and Hui Ji and Levente Lanczi and Marianna Nagy and Monika Beresova and Thi Dao Nguyen and Giancarlo Natalucci and Theofanis Karayannis and Bjoern H. Menze and Meritxell Bach Cuadra and Andr{\'{a}}s Jakab}, title = {A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset}, journal = {CoRR}, volume = {abs/2010.15526}, year = {2020}, url = {https://arxiv.org/abs/2010.15526}, eprinttype = {arXiv}, eprint = {2010.15526}, timestamp = {Tue, 06 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2010-15526.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2012-08645, author = {Tommaso Di Noto and Guillaume Marie and S{\'{e}}bastien Tourbier and Yasser Alem{\'{a}}n{-}G{\'{o}}mez and Guillaume Saliou and Meritxell Bach Cuadra and Patric Hagmann and Jonas Richiardi}, title = {An anatomically-informed 3D {CNN} for brain aneurysm classification with weak labels}, journal = {CoRR}, volume = {abs/2012.08645}, year = {2020}, url = {https://arxiv.org/abs/2012.08645}, eprinttype = {arXiv}, eprint = {2012.08645}, timestamp = {Tue, 05 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2012-08645.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/NguyenPHWRSSC19, author = {Huu{-}Giao Nguyen and Alessia Pica and Jan Hrbacek and Damien C. Weber and Francesco La Rosa and Ann Schalenbourg and Raphael Sznitman and Meritxell Bach Cuadra}, editor = {M. Jorge Cardoso and Aasa Feragen and Ben Glocker and Ender Konukoglu and Ipek Oguz and Gozde B. Unal and Tom Vercauteren}, title = {A novel segmentation framework for uveal melanoma in magnetic resonance imaging based on class activation maps}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2019, 8-10 July 2019, London, United Kingdom}, series = {Proceedings of Machine Learning Research}, volume = {102}, pages = {370--379}, publisher = {{PMLR}}, year = {2019}, url = {http://proceedings.mlr.press/v102/nguyen19a.html}, timestamp = {Mon, 08 Jul 2019 16:13:41 +0200}, biburl = {https://dblp.org/rec/conf/midl/NguyenPHWRSSC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/RosaFKRGTC18, author = {Francesco La Rosa and M{\'{a}}rio Jo{\~{a}}o Fartaria and Tobias Kober and Jonas Richiardi and Cristina Granziera and Jean{-}Philippe Thiran and Meritxell Bach Cuadra}, editor = {Alessandro Crimi and Spyridon Bakas and Hugo J. Kuijf and Farahani Keyvan and Mauricio Reyes and Theo van Walsum}, title = {Shallow vs Deep Learning Architectures for White Matter Lesion Segmentation in the Early Stages of Multiple Sclerosis}, booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {11383}, pages = {142--151}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-11723-8\_14}, doi = {10.1007/978-3-030-11723-8\_14}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/RosaFKRGTC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/NguyenPMSPHWCS18, author = {Huu{-}Giao Nguyen and Alessia Pica and Philippe Maeder and Ann Schalenbourg and Marta Peroni and Jan Hrbacek and Damien C. Weber and Meritxell Bach Cuadra and Raphael Sznitman}, editor = {Danail Stoyanov and Zeike Taylor and Francesco Ciompi and Yanwu Xu and Anne L. Martel and Lena Maier{-}Hein and Nasir M. Rajpoot and Jeroen van der Laak and Mitko Veta and Stephen J. McKenna and David R. J. Snead and Emanuele Trucco and Mona Kathryn Garvin and Xin Jan Chen and Hrvoje Bogunovic}, title = {Ocular Structures Segmentation from Multi-sequences {MRI} Using 3D Unet with Fully Connected CRFs}, booktitle = {Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, {COMPAY} 2018, and 5th International Workshop, {OMIA} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 16-20, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11039}, pages = {167--175}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00949-6\_20}, doi = {10.1007/978-3-030-00949-6\_20}, timestamp = {Mon, 12 Apr 2021 07:49:05 +0200}, biburl = {https://dblp.org/rec/conf/miccai/NguyenPMSPHWCS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1809-03185, author = {Francesco La Rosa and M{\'{a}}rio Jo{\~{a}}o Fartaria and Tobias Kober and Jonas Richiardi and Cristina Granziera and Jean{-}Philippe Thiran and Meritxell Bach Cuadra}, title = {Shallow vs deep learning architectures for white matter lesion segmentation in the early stages of multiple sclerosis}, journal = {CoRR}, volume = {abs/1809.03185}, year = {2018}, url = {http://arxiv.org/abs/1809.03185}, eprinttype = {arXiv}, eprint = {1809.03185}, timestamp = {Fri, 05 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1809-03185.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/TourbierVTHMWCG17, author = {S{\'{e}}bastien Tourbier and Clemente Velasco{-}Annis and Vahid Taimouri and Patric Hagmann and Reto Meuli and Simon K. Warfield and Meritxell Bach Cuadra and Ali Gholipour}, title = {Automated template-based brain localization and extraction for fetal brain {MRI} reconstruction}, journal = {NeuroImage}, volume = {155}, pages = {460--472}, year = {2017}, url = {https://doi.org/10.1016/j.neuroimage.2017.04.004}, doi = {10.1016/J.NEUROIMAGE.2017.04.004}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/TourbierVTHMWCG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/NajdenovskaTJMM17, author = {Elena Najdenovska and Constantin Tuleasca and Jo{\~{a}}o Jorge and Jos{\'{e}} P. Marques and Philippe Maeder and Jean{-}Philippe Thiran and Marc Levivier and Meritxell Bach Cuadra}, editor = {M. Jorge Cardoso and Tal Arbel and Xiongbiao Luo and Stefan Wesarg and Tobias Reichl and Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and A. Jonathan McLeod and Klaus Drechsler and Terry M. Peters and Marius Erdt and Kensaku Mori and Marius George Linguraru and Andreas Uhl and Cristina Oyarzun Laura and Raj Shekhar}, title = {Towards an Automated Segmentation of the Ventro-Intermediate Thalamic Nucleus}, booktitle = {Computer Assisted and Robotic Endoscopy and Clinical Image-Based Procedures - 4th International Workshop, {CARE} 2017, and 6th International Workshop, {CLIP} 2017, Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec City, QC, Canada, September 14, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10550}, pages = {141--150}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67543-5\_14}, doi = {10.1007/978-3-319-67543-5\_14}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/NajdenovskaTJMM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/FartariaRMGKC17, author = {M{\'{a}}rio Jo{\~{a}}o Fartaria and Alexis Roche and Reto Meuli and Cristina Granziera and Tobias Kober and Meritxell Bach Cuadra}, editor = {Maxime Descoteaux and Lena Maier{-}Hein and Alfred M. Franz and Pierre Jannin and D. Louis Collins and Simon Duchesne}, title = {Segmentation of Cortical and Subcortical Multiple Sclerosis Lesions Based on Constrained Partial Volume Modeling}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {10435}, pages = {142--149}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-66179-7\_17}, doi = {10.1007/978-3-319-66179-7\_17}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/FartariaRMGKC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fini/EstebanCDCLS16, author = {Oscar Esteban and Emmanuel Caruyer and Alessandro Daducci and Meritxell Bach Cuadra and Mar{\'{\i}}a J. Ledesma{-}Carbayo and Andr{\'{e}}s Santos}, title = {Diffantom: Whole-Brain Diffusion {MRI} Phantoms Derived from Real Datasets of the Human Connectome Project}, journal = {Frontiers Neuroinformatics}, volume = {10}, pages = {4}, year = {2016}, url = {https://doi.org/10.3389/fninf.2016.00004}, doi = {10.3389/FNINF.2016.00004}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fini/EstebanCDCLS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/EstebanZDCLTS16, author = {Oscar Esteban and Dominique Zosso and Alessandro Daducci and Meritxell Bach Cuadra and Mar{\'{\i}}a J. Ledesma{-}Carbayo and Jean{-}Philippe Thiran and Andr{\'{e}}s Santos}, title = {Surface-driven registration method for the structure-informed segmentation of diffusion {MR} images}, journal = {NeuroImage}, volume = {139}, pages = {450--461}, year = {2016}, url = {https://doi.org/10.1016/j.neuroimage.2016.05.011}, doi = {10.1016/J.NEUROIMAGE.2016.05.011}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/EstebanZDCLTS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/TourbierBHTMC15, author = {S{\'{e}}bastien Tourbier and Xavier Bresson and Patric Hagmann and Jean{-}Philippe Thiran and Reto Meuli and Meritxell Bach Cuadra}, title = {An efficient total variation algorithm for super-resolution in fetal brain {MRI} with adaptive regularization}, journal = {NeuroImage}, volume = {118}, pages = {584--597}, year = {2015}, url = {https://doi.org/10.1016/j.neuroimage.2015.06.018}, doi = {10.1016/J.NEUROIMAGE.2015.06.018}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/TourbierBHTMC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tbe/ZanetCRMMBCK15, author = {Sandro I. De Zanet and Carlos Ciller and Tobias Rudolph and Philippe Maeder and Francis L. Munier and Aubin Balmer and Meritxell Bach Cuadra and Jens Kowal}, title = {Landmark Detection for Fusion of Fundus and {MRI} Toward a Patient-Specific Multimodal Eye Model}, journal = {{IEEE} Trans. Biomed. Eng.}, volume = {62}, number = {2}, pages = {532--540}, year = {2015}, url = {https://doi.org/10.1109/TBME.2014.2359676}, doi = {10.1109/TBME.2014.2359676}, timestamp = {Wed, 02 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tbe/ZanetCRMMBCK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/TourbierHCGGSTM15, author = {S{\'{e}}bastien Tourbier and Patric Hagmann and Maud Cagneaux and Laurent Guibaud and Subrahmanyam Gorthi and Marie Schaer and Jean{-}Philippe Thiran and Reto Meuli and Meritxell Bach Cuadra}, editor = {S{\'{e}}bastien Ourselin and Martin Andreas Styner}, title = {Automatic brain extraction in fetal {MRI} using multi-atlas-based segmentation}, booktitle = {Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February 24-26, 2015}, series = {{SPIE} Proceedings}, volume = {9413}, pages = {94130Y}, publisher = {{SPIE}}, year = {2015}, url = {https://doi.org/10.1117/12.2081777}, doi = {10.1117/12.2081777}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/TourbierHCGGSTM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/EstebanWGLTSC14, author = {Oscar Esteban and Gert Wollny and Subrahmanyam Gorthi and Mar{\'{\i}}a J. Ledesma{-}Carbayo and Jean{-}Philippe Thiran and Andr{\'{e}}s Santos and Meritxell Bach Cuadra}, title = {{MBIS:} Multivariate Bayesian Image Segmentation tool}, journal = {Comput. Methods Programs Biomed.}, volume = {115}, number = {2}, pages = {76--94}, year = {2014}, url = {https://doi.org/10.1016/j.cmpb.2014.03.003}, doi = {10.1016/J.CMPB.2014.03.003}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cmpb/EstebanWGLTSC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/RuedaFKYPRFMPTSMCBCSPGKWCPHN14, author = {Sylvia Rueda and Sana Fathima and Caroline L. Knight and Mohammad Yaqub and Aris T. Papageorghiou and Bahbibi Rahmatullah and Alessandro Foi and Matteo Maggioni and Antonietta Pepe and Jussi Tohka and Richard V. Stebbing and John McManigle and Anca Ciurte and Xavier Bresson and Meritxell Bach Cuadra and Changming Sun and Gennady V. Ponomarev and Mikhail S. Gelfand and Marat D. Kazanov and Ching{-}Wei Wang and Hsiang{-}Chou Chen and Chun{-}Wei Peng and Chu{-}Mei Hung and J. Alison Noble}, title = {Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: {A} Grand Challenge}, journal = {{IEEE} Trans. Medical Imaging}, volume = {33}, number = {4}, pages = {797--813}, year = {2014}, url = {https://doi.org/10.1109/TMI.2013.2276943}, doi = {10.1109/TMI.2013.2276943}, timestamp = {Tue, 05 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/RuedaFKYPRFMPTSMCBCSPGKWCPHN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/EstebanDCOLCS14, author = {Oscar Esteban and Alessandro Daducci and Emmanuel Caruyer and Kieran O'Brien and Mar{\'{\i}}a J. Ledesma{-}Carbayo and Meritxell Bach Cuadra and Andr{\'{e}}s Santos}, title = {Simulation-based evaluation of susceptibility distortion correction methods in diffusion {MRI} for connectivity analysis}, booktitle = {{IEEE} 11th International Symposium on Biomedical Imaging, {ISBI} 2014, April 29 - May 2, 2014, Beijing, Chin, Beijing, China}, pages = {738--741}, publisher = {{IEEE}}, year = {2014}, url = {https://doi.org/10.1109/ISBI.2014.6867976}, doi = {10.1109/ISBI.2014.6867976}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/EstebanDCOLCS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/TourbierBHTMC14, author = {S{\'{e}}bastien Tourbier and Xavier Bresson and Patric Hagmann and Jean{-}Philippe Thiran and Reto Meuli and Meritxell Bach Cuadra}, editor = {Polina Golland and Nobuhiko Hata and Christian Barillot and Joachim Hornegger and Robert D. Howe}, title = {Efficient Total Variation Algorithm for Fetal Brain {MRI} Reconstruction}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {8674}, pages = {252--259}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-10470-6\_32}, doi = {10.1007/978-3-319-10470-6\_32}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/TourbierBHTMC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/EstebanWGLTSC14, author = {Oscar Esteban and Gert Wollny and Subrahmanyam Gorthi and Mar{\'{\i}}a J. Ledesma{-}Carbayo and Jean{-}Philippe Thiran and Andr{\'{e}}s Santos and Meritxell Bach Cuadra}, title = {{MBIS:} Multivariate Bayesian Image Segmentation Tool}, journal = {CoRR}, volume = {abs/1404.0600}, year = {2014}, url = {http://arxiv.org/abs/1404.0600}, eprinttype = {arXiv}, eprint = {1404.0600}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/EstebanWGLTSC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/spl/GorthiCTAT13, author = {Subrahmanyam Gorthi and Meritxell Bach Cuadra and Pierre{-}Alain Tercier and Abdelkarim Allal and Jean{-}Philippe Thiran}, title = {Weighted Shape-Based Averaging With Neighborhood Prior Model for Multiple Atlas Fusion-Based Medical Image Segmentation}, journal = {{IEEE} Signal Process. Lett.}, volume = {20}, number = {11}, pages = {1036--1039}, year = {2013}, url = {https://doi.org/10.1109/LSP.2013.2279269}, doi = {10.1109/LSP.2013.2279269}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/spl/GorthiCTAT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/GorthiCSTAT12, author = {Subrahmanyam Gorthi and Meritxell Bach Cuadra and Ulrike Schick and Pierre{-}Alain Tercier and Abdelkarim Allal and Jean{-}Philippe Thiran}, title = {Evaluation of atlas fusion strategies for segmentation of head and neck lymph nodes for radiotherapy planning}, booktitle = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings}, pages = {1276--1279}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/ISBI.2012.6235795}, doi = {10.1109/ISBI.2012.6235795}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/GorthiCSTAT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/CabezasOLFC11, author = {Mariano Cabezas and Arnau Oliver and Xavier Llad{\'{o}} and Jordi Freixenet and Meritxell Bach Cuadra}, title = {A review of atlas-based segmentation for magnetic resonance brain images}, journal = {Comput. Methods Programs Biomed.}, volume = {104}, number = {3}, pages = {158}, year = {2011}, url = {https://doi.org/10.1016/j.cmpb.2011.07.015}, doi = {10.1016/J.CMPB.2011.07.015}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cmpb/CabezasOLFC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/GorthiDBCCPAT11, author = {Subrahmanyam Gorthi and Valerie Duay and Xavier Bresson and Meritxell Bach Cuadra and F. Javier S{\'{a}}nchez Castro and Claudio Pollo and Abdelkarim Allal and Jean{-}Philippe Thiran}, title = {Active deformation fields: Dense deformation field estimation for atlas-based segmentation using the active contour framework}, journal = {Medical Image Anal.}, volume = {15}, number = {6}, pages = {787--800}, year = {2011}, url = {https://doi.org/10.1016/j.media.2011.05.008}, doi = {10.1016/J.MEDIA.2011.05.008}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/GorthiDBCCPAT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/RocheRCK11, author = {Alexis Roche and Delphine Ribes and Meritxell Bach Cuadra and Gunnar Kr{\"{u}}ger}, title = {On the convergence of EM-like algorithms for image segmentation using Markov random fields}, journal = {Medical Image Anal.}, volume = {15}, number = {6}, pages = {830--839}, year = {2011}, url = {https://doi.org/10.1016/j.media.2011.05.002}, doi = {10.1016/J.MEDIA.2011.05.002}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/RocheRCK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/GorthiTC11, author = {Subrahmanyam Gorthi and Jean{-}Philippe Thiran and Meritxell Bach Cuadra}, editor = {Beno{\^{\i}}t Macq and Peter Schelkens}, title = {Comparison of energy minimization methods for 3-D brain tissue classification}, booktitle = {18th {IEEE} International Conference on Image Processing, {ICIP} 2011, Brussels, Belgium, September 11-14, 2011}, pages = {57--60}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/ICIP.2011.6116615}, doi = {10.1109/ICIP.2011.6116615}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icip/GorthiTC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/FerrareseDCLGTM11, author = {Francesca Pizzorni Ferrarese and Alessandro Daducci and Meritxell Bach Cuadra and Alia Lemkaddem and Cristina Granziera and Jean{-}Philippe Thiran and Gloria Menegaz}, editor = {Beno{\^{\i}}t Macq and Peter Schelkens}, title = {Towards a diffusion image processing validation and accuracy prediction framework}, booktitle = {18th {IEEE} International Conference on Image Processing, {ICIP} 2011, Brussels, Belgium, September 11-14, 2011}, pages = {2269--2272}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/ICIP.2011.6116091}, doi = {10.1109/ICIP.2011.6116091}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icip/FerrareseDCLGTM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/CiurteHNPMTBC11, author = {Anca Ciurte and Nawal Houhou and Sergiu Nedevschi and Alessia Pica and Francis L. Munier and Jean{-}Philippe Thiran and Xavier Bresson and Meritxell Bach Cuadra}, title = {An efficient segmentation method for ultrasound images based on a semi-supervised approach and patch-based features}, booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011, Chicago, Illinois, {USA}}, pages = {969--972}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/ISBI.2011.5872564}, doi = {10.1109/ISBI.2011.5872564}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/CiurteHNPMTBC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/CardenesGC09, author = {Rub{\'{e}}n C{\'{a}}rdenes and Rodrigo de Luis Garc{\'{\i}}a and Meritxell Bach Cuadra}, title = {A multidimensional segmentation evaluation for medical image data}, journal = {Comput. Methods Programs Biomed.}, volume = {96}, number = {2}, pages = {108--124}, year = {2009}, url = {https://doi.org/10.1016/j.cmpb.2009.04.009}, doi = {10.1016/J.CMPB.2009.04.009}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cmpb/CardenesGC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jstsp/GorthiDHCSBAT09, author = {Subrahmanyam Gorthi and Valerie Duay and Nawal Houhou and Meritxell Bach Cuadra and Ulrike Schick and Minerva Becker and Abdelkarim Allal and Jean{-}Philippe Thiran}, title = {Segmentation of Head and Neck Lymph Node Regions for Radiotherapy Planning Using Active Contour-Based Atlas Registration}, journal = {{IEEE} J. Sel. Top. Signal Process.}, volume = {3}, number = {1}, pages = {135--147}, year = {2009}, url = {https://doi.org/10.1109/JSTSP.2008.2011104}, doi = {10.1109/JSTSP.2008.2011104}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jstsp/GorthiDHCSBAT09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/SchaerCTLET08, author = {Marie Schaer and Meritxell Bach Cuadra and Lucas Tamarit and Fran{\c{c}}ois Lazeyras and Stephan Eliez and Jean{-}Philippe Thiran}, title = {A Surface-Based Approach to Quantify Local Cortical Gyrification}, journal = {{IEEE} Trans. Medical Imaging}, volume = {27}, number = {2}, pages = {161--170}, year = {2008}, url = {https://doi.org/10.1109/TMI.2007.903576}, doi = {10.1109/TMI.2007.903576}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/SchaerCTLET08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eusipco/FerrarioCSHZEGT08, author = {D. Ferrario and Meritxell Bach Cuadra and Marie Schaer and Nawal Houhou and Dominique Zosso and Stephan Eliez and Laurent Guibaud and Jean{-}Philippe Thiran}, title = {Brain surface segmentation of Magnetic Resonance images of the fetus}, booktitle = {2008 16th European Signal Processing Conference, {EUSIPCO} 2008, Lausanne, Switzerland, August 25-29, 2008}, pages = {1--5}, publisher = {{IEEE}}, year = {2008}, url = {https://ieeexplore.ieee.org/document/7080427/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eusipco/FerrarioCSHZEGT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eusipco/PinaCKJGT08, author = {X. Pena Pina and Meritxell Bach Cuadra and Nicolas Kunz and Nathalie Just and Rolf Gruetter and Jean{-}Philippe Thiran}, title = {Fast bias field correction for 9.4 tesla magnetic resonance imaging}, booktitle = {2008 16th European Signal Processing Conference, {EUSIPCO} 2008, Lausanne, Switzerland, August 25-29, 2008}, pages = {1--5}, publisher = {{IEEE}}, year = {2008}, url = {https://ieeexplore.ieee.org/document/7080621/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eusipco/PinaCKJGT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DuayBCPCT08, author = {Valerie Duay and Xavier Bresson and F. Javier S{\'{a}}nchez Castro and Claudio Pollo and Meritxell Bach Cuadra and Jean{-}Philippe Thiran}, editor = {Dimitris N. Metaxas and Leon Axel and Gabor Fichtinger and G{\'{a}}bor Sz{\'{e}}kely}, title = {An Active Contour-Based Atlas Registration Model Applied to Automatic Subthalamic Nucleus Targeting on {MRI:} Method and Validation}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2008, 11th International Conference, New York, NY, USA, September 6-10, 2008, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {5242}, pages = {980--988}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-85990-1\_118}, doi = {10.1007/978-3-540-85990-1\_118}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/DuayBCPCT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/ZossoCCAJT08, author = {Dominique Zosso and Beno{\^{\i}}t Le Callennec and Meritxell Bach Cuadra and Kamiar Aminian and Brigitte M. Jolles and Jean{-}Philippe Thiran}, editor = {Joseph M. Reinhardt and Josien P. W. Pluim}, title = {Bi-planar 2D-to-3D registration in Fourier domain for stereoscopic x-ray motion tracking}, booktitle = {Medical Imaging 2008: Image Processing, San Diego, California, United States, 16-21 February 2008}, series = {{SPIE} Proceedings}, volume = {6914}, pages = {69140I}, publisher = {{SPIE}}, year = {2008}, url = {https://doi.org/10.1117/12.769469}, doi = {10.1117/12.769469}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/ZossoCCAJT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/caip/CardenesBCMLACB07, author = {Rub{\'{e}}n C{\'{a}}rdenes and Meritxell Bach and Ying Chi and Ioannis Marras and Rodrigo de Luis Garc{\'{\i}}a and Mats Anderson and Peter Cashman and Matthieu Bultelle}, editor = {Walter G. Kropatsch and Martin Kampel and Allan Hanbury}, title = {Multimodal Evaluation for Medical Image Segmentation}, booktitle = {Computer Analysis of Images and Patterns, 12th International Conference, {CAIP} 2007, Vienna, Austria, August 27-29, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4673}, pages = {229--236}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74272-2\_29}, doi = {10.1007/978-3-540-74272-2\_29}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/caip/CardenesBCMLACB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eusipco/DuayBHCT07, author = {Valerie Duay and Xavier Bresson and Nawal Houhou and Meritxell Bach Cuadra and Jean{-}Philippe Thiran}, title = {Registration of multiple regions derived from the optical flow model and the active contour framework}, booktitle = {15th European Signal Processing Conference, {EUSIPCO} 2007, Poznan, Poland, September 3-7, 2007}, pages = {282--286}, publisher = {{IEEE}}, year = {2007}, url = {https://ieeexplore.ieee.org/document/7098809/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eusipco/DuayBHCT07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/CuadraCDMPT06, author = {Meritxell Bach Cuadra and Mathieu De Craene and Valerie Duay and Beno{\^{\i}}t Macq and Claudio Pollo and Jean{-}Philippe Thiran}, title = {Dense deformation field estimation for atlas-based segmentation of pathological {MR} brain images}, journal = {Comput. Methods Programs Biomed.}, volume = {84}, number = {2-3}, pages = {66--75}, year = {2006}, url = {https://doi.org/10.1016/j.cmpb.2006.08.003}, doi = {10.1016/J.CMPB.2006.08.003}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cmpb/CuadraCDMPT06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/CastroPMMCCVT06, author = {F. Javier S{\'{a}}nchez Castro and Claudio Pollo and Reto Meuli and Philippe Maeder and Olivier Cuisenaire and Meritxell Bach Cuadra and Jean{-}Guy Villemure and Jean{-}Philippe Thiran}, title = {A Cross Validation Study of Deep Brain Stimulation Targeting: From Experts to Atlas-Based, Segmentation-Based and Automatic Registration Algorithms}, journal = {{IEEE} Trans. Medical Imaging}, volume = {25}, number = {11}, pages = {1440--1450}, year = {2006}, url = {https://doi.org/10.1109/TMI.2006.882129}, doi = {10.1109/TMI.2006.882129}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tmi/CastroPMMCCVT06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eusipco/DuayCBT06, author = {Valerie Duay and Meritxell Bach Cuadra and Xavier Bresson and Jean{-}Philippe Thiran}, title = {Dense deformation field estimation for atlas registration using the active contour framework}, booktitle = {14th European Signal Processing Conference, {EUSIPCO} 2006, Florence, Italy, September 4-8, 2006}, pages = {1--5}, publisher = {{IEEE}}, year = {2006}, url = {https://ieeexplore.ieee.org/document/7071443/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eusipco/DuayCBT06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/PolloCCVT05, author = {Claudio Pollo and Meritxell Bach Cuadra and Olivier Cuisenaire and Jean{-}Guy Villemure and Jean{-}Philippe Thiran}, title = {Segmentation of brain structures in presence of a space-occupying lesion}, journal = {NeuroImage}, volume = {24}, number = {4}, pages = {990--996}, year = {2005}, url = {https://doi.org/10.1016/j.neuroimage.2004.10.004}, doi = {10.1016/J.NEUROIMAGE.2004.10.004}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/neuroimage/PolloCCVT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/CuadraCBCT05, author = {Meritxell Bach Cuadra and Leila Cammoun and Torsten Butz and Olivier Cuisenaire and Jean{-}Philippe Thiran}, title = {Comparison and validation of tissue modelization and statistical classification methods in T1-weighted {MR} brain images}, journal = {{IEEE} Trans. Medical Imaging}, volume = {24}, number = {12}, pages = {1548--1565}, year = {2005}, url = {https://doi.org/10.1109/TMI.2005.857652}, doi = {10.1109/TMI.2005.857652}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/CuadraCBCT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/GigandetCPCCT05, author = {Xavier Gigandet and Meritxell Bach Cuadra and Abram Pointet and Leila Cammoun and R{\'{e}}gis Caloz and Jean{-}Philippe Thiran}, title = {Region-based satellite image classification: method and validation}, booktitle = {Proceedings of the 2005 International Conference on Image Processing, {ICIP} 2005, Genoa, Italy, September 11-14, 2005}, pages = {832--835}, publisher = {{IEEE}}, year = {2005}, url = {https://doi.org/10.1109/ICIP.2005.1530521}, doi = {10.1109/ICIP.2005.1530521}, timestamp = {Wed, 16 Oct 2019 14:14:52 +0200}, biburl = {https://dblp.org/rec/conf/icip/GigandetCPCCT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/CastroPMMCCVT05, author = {F. Javier S{\'{a}}nchez Castro and Claudio Pollo and Reto Meuli and Philippe Maeder and Meritxell Bach Cuadra and Olivier Cuisenaire and Jean{-}Guy Villemure and Jean{-}Philippe Thiran}, editor = {James S. Duncan and Guido Gerig}, title = {Cross Validation of Experts Versus Registration Methods for Target Localization in Deep Brain Stimulation}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2005, 8th International Conference, Palm Springs, CA, USA, October 26-29, 2005, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {3749}, pages = {417--424}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11566465\_52}, doi = {10.1007/11566465\_52}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/CastroPMMCCVT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/CuadraPBCVT04, author = {Meritxell Bach Cuadra and Claudio Pollo and Anton Bardera and Olivier Cuisenaire and Jean{-}Guy Villemure and Jean{-}Philippe Thiran}, title = {Atlas-based segmentation of pathological {MR} brain images using a model of lesion growth}, journal = {{IEEE} Trans. Medical Imaging}, volume = {23}, number = {10}, pages = {1301--1314}, year = {2004}, url = {https://doi.org/10.1109/TMI.2004.834618}, doi = {10.1109/TMI.2004.834618}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/CuadraPBCVT04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/CuadraPBCVT03, author = {Meritxell Bach Cuadra and Claudio Pollo and Anton Bardera and Olivier Cuisenaire and Jean{-}Guy Villemure and Jean{-}Philippe Thiran}, title = {Atlas-based segmentation of pathological brain {MR} images}, booktitle = {Proceedings of the 2003 International Conference on Image Processing, {ICIP} 2003, Barcelona, Catalonia, Spain, September 14-18, 2003}, pages = {573--576}, publisher = {{IEEE}}, year = {2003}, url = {https://doi.org/10.1109/ICIP.2003.1247026}, doi = {10.1109/ICIP.2003.1247026}, timestamp = {Wed, 16 Oct 2019 14:14:52 +0200}, biburl = {https://dblp.org/rec/conf/icip/CuadraPBCVT03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/CuadraPSBT02, author = {Meritxell Bach Cuadra and Bram Platel and Eduardo Solanas and Torsten Butz and Jean{-}Philippe Thiran}, editor = {Takeyoshi Dohi and Ron Kikinis}, title = {Validation of Tissue Modelization and Classification Techniques in T1-Weighted {MR} Brain Images}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2002, 5th International Conference, Tokyo, Japan, September 25-28, 2002, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {2488}, pages = {290--297}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45786-0\_36}, doi = {10.1007/3-540-45786-0\_36}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/CuadraPSBT02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/CuadraGHPVDT02, author = {Meritxell Bach Cuadra and J. Gomez and Patric Hagmann and Claudio Pollo and Jean{-}Guy Villemure and Benoit M. Dawant and Jean{-}Philippe Thiran}, editor = {Takeyoshi Dohi and Ron Kikinis}, title = {Atlas-Based Segmentation of Pathological Brains Using a Model of Tumor Growth}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2002, 5th International Conference, Tokyo, Japan, September 25-28, 2002, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {2488}, pages = {380--387}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45786-0\_47}, doi = {10.1007/3-540-45786-0\_47}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/CuadraGHPVDT02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/CuadraCMT01, author = {Meritxell Bach Cuadra and Olivier Cuisenaire and Reto Meuli and Jean{-}Philippe Thiran}, title = {Automatic segmentation of internal structures of the brain in {MR} images using a tandem of affine and non-rigid registration of an anatomical brain atlas}, booktitle = {Proceedings of the 2001 International Conference on Image Processing, {ICIP} 2001, Thessaloniki, Greece, October 7-10, 2001}, pages = {1083--1086}, publisher = {{IEEE}}, year = {2001}, url = {https://doi.org/10.1109/ICIP.2001.958315}, doi = {10.1109/ICIP.2001.958315}, timestamp = {Wed, 16 Oct 2019 14:14:52 +0200}, biburl = {https://dblp.org/rec/conf/icip/CuadraCMT01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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