BibTeX records: Meritxell Bach Cuadra

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@article{DBLP:journals/corr/abs-2403-15103,
  author       = {Vladyslav Zalevskyi and
                  Thomas Sanchez and
                  Margaux Roulet and
                  Jordina Aviles Verdera and
                  Jana Hutter and
                  Hamza Kebiri and
                  Meritxell Bach Cuadra},
  title        = {Improving cross-domain brain tissue segmentation in fetal {MRI} with
                  synthetic data},
  journal      = {CoRR},
  volume       = {abs/2403.15103},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2403.15103},
  doi          = {10.48550/ARXIV.2403.15103},
  eprinttype    = {arXiv},
  eprint       = {2403.15103},
  timestamp    = {Thu, 11 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2403-15103.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/PayetteLDLJSXMLPWPXZDFWRKKKGTOVLABB23,
  author       = {Kelly Payette and
                  Hongwei Bran Li and
                  Priscille de Dumast and
                  Roxane Licandro and
                  Hui Ji and
                  Md Mahfuzur Rahman Siddiquee and
                  Daguang Xu and
                  Andriy Myronenko and
                  Hao Liu and
                  Yuchen Pei and
                  Lisheng Wang and
                  Ying Peng and
                  Juanying Xie and
                  Huiquan Zhang and
                  Guiming Dong and
                  Hao Fu and
                  Guotai Wang and
                  ZunHyan Rieu and
                  Donghyeon Kim and
                  Hyun Gi Kim and
                  Davood Karimi and
                  Ali Gholipour and
                  Helena R. Torres and
                  Bruno Oliveira and
                  Jo{\~{a}}o L. Vila{\c{c}}a and
                  Yang Lin and
                  Netanell Avisdris and
                  Ori Ben{-}Zvi and
                  Dafna Ben{-}Bashat and
                  Lucas Fidon and
                  Michael Aertsen and
                  Tom Vercauteren and
                  Daniel Sobotka and
                  Georg Langs and
                  Mireia Aleny{\`{a}} and
                  Maria Inmaculada Villanueva and
                  Oscar Camara and
                  Bella Specktor{-}Fadida and
                  Leo Joskowicz and
                  Liao Weibin and
                  Lv Yi and
                  Xuesong Li and
                  Moona Mazher and
                  Abdul Qayyum and
                  Domenec Puig and
                  Hamza Kebiri and
                  Zelin Zhang and
                  Xinyi Xu and
                  Dan Wu and
                  KuanLun Liao and
                  YiXuan Wu and
                  JinTai Chen and
                  Yunzhi Xu and
                  Li Zhao and
                  Lana Vasung and
                  Bjoern H. Menze and
                  Meritxell Bach Cuadra and
                  Andr{\'{a}}s Jakab},
  title        = {Fetal brain tissue annotation and segmentation challenge results},
  journal      = {Medical Image Anal.},
  volume       = {88},
  pages        = {102833},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.media.2023.102833},
  doi          = {10.1016/J.MEDIA.2023.102833},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/PayetteLDLJSXMLPWPXZDFWRKKKGTOVLABB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/MartinezCJ23,
  author       = {Cristina Sainz Martinez and
                  Meritxell Bach Cuadra and
                  Jo{\~{a}}o Jorge},
  title        = {BigBrain-MR: a new digital phantom with anatomically-realistic magnetic
                  resonance properties at 100-{\(\mathrm{\mu}\)}m resolution for magnetic
                  resonance methods development},
  journal      = {NeuroImage},
  volume       = {273},
  pages        = {120074},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.neuroimage.2023.120074},
  doi          = {10.1016/J.NEUROIMAGE.2023.120074},
  timestamp    = {Wed, 17 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/MartinezCJ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/NotoMTAESCHR23,
  author       = {Tommaso Di Noto and
                  Guillaume Marie and
                  S{\'{e}}bastien Tourbier and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Oscar Esteban and
                  Guillaume Saliou and
                  Meritxell Bach Cuadra and
                  Patric Hagmann and
                  Jonas Richiardi},
  title        = {Towards Automated Brain Aneurysm Detection in {TOF-MRA:} Open Data,
                  Weak Labels, and Anatomical Knowledge},
  journal      = {Neuroinformatics},
  volume       = {21},
  number       = {1},
  pages        = {21--34},
  year         = {2023},
  url          = {https://doi.org/10.1007/s12021-022-09597-0},
  doi          = {10.1007/S12021-022-09597-0},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ni/NotoMTAESCHR23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DumastC23,
  author       = {Priscille de Dumast and
                  Meritxell Bach Cuadra},
  title        = {Domain Generalization in Fetal Brain {MRI} Segmentation with Multi-Reconstruction
                  Augmentation},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230402},
  doi          = {10.1109/ISBI53787.2023.10230402},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/DumastC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LachlerLUCP23,
  author       = {Kay L{\"{a}}chler and
                  H{\'{e}}l{\`{e}}ne Lajous and
                  Michael Unser and
                  Meritxell Bach Cuadra and
                  Pol del Aguila Pla},
  title        = {Self-Supervised Isotropic Superresolution Fetal Brain {MRI}},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230522},
  doi          = {10.1109/ISBI53787.2023.10230522},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbi/LachlerLUCP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/MolchanovaRMRMGGGC23,
  author       = {Nataliia Molchanova and
                  Vatsal Raina and
                  Andrey Malinin and
                  Francesco La Rosa and
                  Henning M{\"{u}}ller and
                  Mark J. F. Gales and
                  Cristina Granziera and
                  Mara Graziani and
                  Meritxell Bach Cuadra},
  title        = {Novel Structural-Scale Uncertainty Measures and Error Retention Curves:
                  Application to Multiple Sclerosis},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230563},
  doi          = {10.1109/ISBI53787.2023.10230563},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbi/MolchanovaRMRMGGGC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RainaMGMMCG23,
  author       = {Vatsal Raina and
                  Nataliia Molchanova and
                  Mara Graziani and
                  Andrey Malinin and
                  Henning M{\"{u}}ller and
                  Meritxell Bach Cuadra and
                  Mark J. F. Gales},
  title        = {Tackling Bias in the Dice Similarity Coefficient: Introducing {NDSC}
                  for White Matter Lesion Segmentation},
  booktitle    = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2023, Cartagena, Colombia, April 18-21, 2023},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/ISBI53787.2023.10230755},
  doi          = {10.1109/ISBI53787.2023.10230755},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbi/RainaMGMMCG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SanchezEGEC23,
  author       = {Thomas Sanchez and
                  Oscar Esteban and
                  Yvan Gomez and
                  Elisenda Eixarch and
                  Meritxell Bach Cuadra},
  editor       = {Daphna Link{-}Sourani and
                  Esra Abaci Turk and
                  Christopher K. Macgowan and
                  Jana Hutter and
                  Andrew Melbourne and
                  Roxane Licandro},
  title        = {FetMRQC: Automated Quality Control for Fetal Brain {MRI}},
  booktitle    = {Perinatal, Preterm and Paediatric Image Analysis - 8th International
                  Workshop, {PIPPI} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver,
                  BC, Canada, October 12, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14246},
  pages        = {3--16},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-45544-5\_1},
  doi          = {10.1007/978-3-031-45544-5\_1},
  timestamp    = {Fri, 27 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/SanchezEGEC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KebiriGLVKC23,
  author       = {Hamza Kebiri and
                  Ali Gholipour and
                  Rizhong Lin and
                  Lana Vasung and
                  Davood Karimi and
                  Meritxell Bach Cuadra},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {Robust Estimation of the Microstructure of the Early Developing Brain
                  Using Deep Learning},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14226},
  pages        = {293--303},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43990-2\_28},
  doi          = {10.1007/978-3-031-43990-2\_28},
  timestamp    = {Thu, 05 Oct 2023 18:00:39 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/KebiriGLVKC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DumastSLC23,
  author       = {Priscille de Dumast and
                  Thomas Sanchez and
                  H{\'{e}}l{\`{e}}ne Lajous and
                  Meritxell Bach Cuadra},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {Simulation-Based Parameter Optimization for Fetal Brain {MRI} Super-Resolution
                  Reconstruction},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14226},
  pages        = {336--346},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43990-2\_32},
  doi          = {10.1007/978-3-031-43990-2\_32},
  timestamp    = {Fri, 27 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DumastSLC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-05432,
  author       = {Vatsal Raina and
                  Nataliia Molchanova and
                  Mara Graziani and
                  Andrey Malinin and
                  Henning M{\"{u}}ller and
                  Meritxell Bach Cuadra and
                  Mark J. F. Gales},
  title        = {Tackling Bias in the Dice Similarity Coefficient: Introducing nDSC
                  for White Matter Lesion Segmentation},
  journal      = {CoRR},
  volume       = {abs/2302.05432},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2302.05432},
  doi          = {10.48550/ARXIV.2302.05432},
  eprinttype    = {arXiv},
  eprint       = {2302.05432},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2302-05432.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-05879,
  author       = {Thomas Sanchez and
                  Oscar Esteban and
                  Yvan Gomez and
                  Elisenda Eixarch and
                  Meritxell Bach Cuadra},
  title        = {FetMRQC: Automated Quality Control for fetal brain {MRI}},
  journal      = {CoRR},
  volume       = {abs/2304.05879},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2304.05879},
  doi          = {10.48550/ARXIV.2304.05879},
  eprinttype    = {arXiv},
  eprint       = {2304.05879},
  timestamp    = {Thu, 20 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2304-05879.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-02223,
  author       = {Hamza Kebiri and
                  Ali Gholipour and
                  Meritxell Bach Cuadra and
                  Davood Karimi},
  title        = {Direct segmentation of brain white matter tracts in diffusion {MRI}},
  journal      = {CoRR},
  volume       = {abs/2307.02223},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.02223},
  doi          = {10.48550/ARXIV.2307.02223},
  eprinttype    = {arXiv},
  eprint       = {2307.02223},
  timestamp    = {Mon, 10 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-02223.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-04780,
  author       = {Thomas Sanchez and
                  Oscar Esteban and
                  Yvan Gomez and
                  Alexandre Pron and
                  M{\'{e}}riam Koob and
                  Vincent Dunet and
                  Nadine Girard and
                  Andr{\'{a}}s Jakab and
                  Elisenda Eixarch and
                  Guillaume Auzias and
                  Meritxell Bach Cuadra},
  title        = {FetMRQC: an open-source machine learning framework for multi-centric
                  fetal brain {MRI} quality control},
  journal      = {CoRR},
  volume       = {abs/2311.04780},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2311.04780},
  doi          = {10.48550/ARXIV.2311.04780},
  eprinttype    = {arXiv},
  eprint       = {2311.04780},
  timestamp    = {Thu, 16 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2311-04780.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-08931,
  author       = {Nataliia Molchanova and
                  Vatsal Raina and
                  Andrey Malinin and
                  Francesco La Rosa and
                  Adrien Depeursinge and
                  Mark J. F. Gales and
                  Cristina Granziera and
                  Henning M{\"{u}}ller and
                  Mara Graziani and
                  Meritxell Bach Cuadra},
  title        = {Structural-Based Uncertainty in Deep Learning Across Anatomical Scales:
                  Analysis in White Matter Lesion Segmentation},
  journal      = {CoRR},
  volume       = {abs/2311.08931},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2311.08931},
  doi          = {10.48550/ARXIV.2311.08931},
  eprinttype    = {arXiv},
  eprint       = {2311.08931},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2311-08931.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-14773,
  author       = {Rizhong Lin and
                  Ali Gholipour and
                  Jean{-}Philippe Thiran and
                  Davood Karimi and
                  Hamza Kebiri and
                  Meritxell Bach Cuadra},
  title        = {Cross-Age and Cross-Site Domain Shift Impacts on Deep Learning-Based
                  White Matter Fiber Estimation in Newborn and Baby Brains},
  journal      = {CoRR},
  volume       = {abs/2312.14773},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2312.14773},
  doi          = {10.48550/ARXIV.2312.14773},
  eprinttype    = {arXiv},
  eprint       = {2312.14773},
  timestamp    = {Wed, 10 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2312-14773.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jossw/TourbierQGAMGSW22,
  author       = {S{\'{e}}bastien Tourbier and
                  Joan Ru{\'{e}} Queralt and
                  Katharina Glomb and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Emeline Mullier and
                  Alessandra Griffa and
                  Mikkel Sch{\"{o}}ttner and
                  Jonathan Wirsich and
                  Mustafa Anil Tuncel and
                  Jakub Jancovic and
                  Meritxell Bach Cuadra and
                  Patric Hagmann},
  title        = {Connectome Mapper 3: {A} Flexible and Open-Source Pipeline Software
                  for Multiscale Multimodal Human Connectome Mapping},
  journal      = {J. Open Source Softw.},
  volume       = {7},
  number       = {74},
  pages        = {4248},
  year         = {2022},
  url          = {https://doi.org/10.21105/joss.04248},
  doi          = {10.21105/JOSS.04248},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jossw/TourbierQGAMGSW22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DumastKPJLC22,
  author       = {Priscille de Dumast and
                  Hamza Kebiri and
                  Kelly Payette and
                  Andr{\'{a}}s Jakab and
                  H{\'{e}}l{\`{e}}ne Lajous and
                  Meritxell Bach Cuadra},
  title        = {Synthetic Magnetic Resonance Images for Domain Adaptation: Application
                  to Fetal Brain Tissue Segmentation},
  booktitle    = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2022, Kolkata, India, March 28-31, 2022},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.1109/ISBI52829.2022.9761451},
  doi          = {10.1109/ISBI52829.2022.9761451},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/DumastKPJLC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KebiriGAYJCC22,
  author       = {Hamza Kebiri and
                  Gabriel Girard and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Thomas Yu and
                  Andr{\'{a}}s Jakab and
                  Erick Jorge Canales{-}Rodr{\'{\i}}guez and
                  Meritxell Bach Cuadra},
  editor       = {Suheyla Cetin Karayumak and
                  Daan Christiaens and
                  Matteo Figini and
                  Pamela Guevara and
                  Tomasz Pieciak and
                  Elizabeth Powell and
                  Francois Rheault},
  title        = {Slice Estimation in Diffusion {MRI} of Neonatal and Fetal Brains in
                  Image and Spherical Harmonics Domains Using Autoencoders},
  booktitle    = {Computational Diffusion {MRI} - 13th International Workshop, {CDMRI}
                  2022, Held in Conjunction with {MICCAI} 2022, Singapore, Singapore,
                  September 22, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13722},
  pages        = {3--13},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-21206-2\_1},
  doi          = {10.1007/978-3-031-21206-2\_1},
  timestamp    = {Thu, 08 Dec 2022 15:05:30 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/KebiriGAYJCC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/TaymourtashKSNT22,
  author       = {Athena Taymourtash and
                  Hamza Kebiri and
                  Ernst Schwartz and
                  Karl{-}Heinz Nenning and
                  S{\'{e}}bastien Tourbier and
                  Gregor Kasprian and
                  Daniela Prayer and
                  Meritxell Bach Cuadra and
                  Georg Langs},
  editor       = {Linwei Wang and
                  Qi Dou and
                  P. Thomas Fletcher and
                  Stefanie Speidel and
                  Shuo Li},
  title        = {Spatio-Temporal Motion Correction and Iterative Reconstruction of
                  In-Utero Fetal fMRI},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2022 - 25th International Conference, Singapore, September 18-22,
                  2022, Proceedings, Part {VI}},
  series       = {Lecture Notes in Computer Science},
  volume       = {13436},
  pages        = {603--612},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-16446-0\_57},
  doi          = {10.1007/978-3-031-16446-0\_57},
  timestamp    = {Tue, 13 Dec 2022 14:39:06 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/TaymourtashKSNT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-07463,
  author       = {Francesco La Rosa and
                  Maxence Wynen and
                  Omar Al{-}Louzi and
                  Erin S. Beck and
                  Till Huelnhagen and
                  Pietro Maggi and
                  Jean{-}Philippe Thiran and
                  Tobias Kober and
                  Russell T. Shinohara and
                  Pascal Sati and
                  Daniel S. Reich and
                  Cristina Granziera and
                  Martina Absinta and
                  Meritxell Bach Cuadra},
  title        = {Cortical lesions, central vein sign, and paramagnetic rim lesions
                  in multiple sclerosis: emerging machine learning techniques and future
                  avenues},
  journal      = {CoRR},
  volume       = {abs/2201.07463},
  year         = {2022},
  url          = {https://arxiv.org/abs/2201.07463},
  eprinttype    = {arXiv},
  eprint       = {2201.07463},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2201-07463.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-12535,
  author       = {Thomas Yu and
                  Tom Hilbert and
                  Gian Franco Piredda and
                  Arun Joseph and
                  Gabriele Bonanno and
                  Salim Zenkhri and
                  Patrick Omoumi and
                  Meritxell Bach Cuadra and
                  Erick Jorge Canales{-}Rodr{\'{\i}}guez and
                  Tobias Kober and
                  Jean{-}Philippe Thiran},
  title        = {Validation and Generalizability of Self-Supervised Image Reconstruction
                  Methods for Undersampled {MRI}},
  journal      = {CoRR},
  volume       = {abs/2201.12535},
  year         = {2022},
  url          = {https://arxiv.org/abs/2201.12535},
  eprinttype    = {arXiv},
  eprint       = {2201.12535},
  timestamp    = {Wed, 02 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2201-12535.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2204-09573,
  author       = {Kelly Payette and
                  Hongwei Li and
                  Priscille de Dumast and
                  Roxane Licandro and
                  Hui Ji and
                  Md Mahfuzur Rahman Siddiquee and
                  Daguang Xu and
                  Andriy Myronenko and
                  Hao Liu and
                  Yuchen Pei and
                  Lisheng Wang and
                  Ying Peng and
                  Juanying Xie and
                  Huiquan Zhang and
                  Guiming Dong and
                  Hao Fu and
                  Guotai Wang and
                  ZunHyan Rieu and
                  Donghyeon Kim and
                  Hyun Gi Kim and
                  Davood Karimi and
                  Ali Gholipour and
                  Helena R. Torres and
                  Bruno Oliveira and
                  Jo{\~{a}}o L. Vila{\c{c}}a and
                  Yang Lin and
                  Netanell Avisdris and
                  Ori Ben{-}Zvi and
                  Dafna Ben{-}Bashat and
                  Lucas Fidon and
                  Michael Aertsen and
                  Tom Vercauteren and
                  Daniel Sobotka and
                  Georg Langs and
                  Mireia Aleny{\`{a}} and
                  Maria Inmaculada Villanueva and
                  Oscar Camara and
                  Bella Specktor{-}Fadida and
                  Leo Joskowicz and
                  Weibin Liao and
                  Lv Yi and
                  Xuesong Li and
                  Moona Mazher and
                  Abdul Qayyum and
                  Domenec Puig and
                  Hamza Kebiri and
                  Zelin Zhang and
                  Xinyi Xu and
                  Dan Wu and
                  KuanLun Liao and
                  YiXuan Wu and
                  JinTai Chen and
                  Yunzhi Xu and
                  Li Zhao and
                  Lana Vasung and
                  Bjoern H. Menze and
                  Meritxell Bach Cuadra and
                  Andr{\'{a}}s Jakab},
  title        = {Fetal Brain Tissue Annotation and Segmentation Challenge Results},
  journal      = {CoRR},
  volume       = {abs/2204.09573},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2204.09573},
  doi          = {10.48550/ARXIV.2204.09573},
  eprinttype    = {arXiv},
  eprint       = {2204.09573},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2204-09573.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-15407,
  author       = {Andrey Malinin and
                  Andreas Athanasopoulos and
                  Muhamed Barakovic and
                  Meritxell Bach Cuadra and
                  Mark J. F. Gales and
                  Cristina Granziera and
                  Mara Graziani and
                  Nikolay Kartashev and
                  Konstantinos Kyriakopoulos and
                  Po{-}Jui Lu and
                  Nataliia Molchanova and
                  Antonis Nikitakis and
                  Vatsal Raina and
                  Francesco La Rosa and
                  Eli Sivena and
                  Vasileios Tsarsitalidis and
                  Efi Tsompopoulou and
                  Elena Volf},
  title        = {Shifts 2.0: Extending The Dataset of Real Distributional Shifts},
  journal      = {CoRR},
  volume       = {abs/2206.15407},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2206.15407},
  doi          = {10.48550/ARXIV.2206.15407},
  eprinttype    = {arXiv},
  eprint       = {2206.15407},
  timestamp    = {Mon, 04 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2206-15407.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-09698,
  author       = {Tommaso Di Noto and
                  Meritxell Bach Cuadra and
                  Chirine Atat and
                  Eduardo Gamito Teiga and
                  Monika Hegi and
                  Andreas Hottinger and
                  Patric Hagmann and
                  Jonas Richiardi},
  title        = {Transfer learning with weak labels from radiology reports: application
                  to glioma change detection},
  journal      = {CoRR},
  volume       = {abs/2210.09698},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2210.09698},
  doi          = {10.48550/ARXIV.2210.09698},
  eprinttype    = {arXiv},
  eprint       = {2210.09698},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2210-09698.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-04825,
  author       = {Nataliia Molchanova and
                  Vatsal Raina and
                  Andrey Malinin and
                  Francesco La Rosa and
                  Henning M{\"{u}}ller and
                  Mark J. F. Gales and
                  Cristina Granziera and
                  Mara Graziani and
                  Meritxell Bach Cuadra},
  title        = {Novel structural-scale uncertainty measures and error retention curves:
                  application to multiple sclerosis},
  journal      = {CoRR},
  volume       = {abs/2211.04825},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2211.04825},
  doi          = {10.48550/ARXIV.2211.04825},
  eprinttype    = {arXiv},
  eprint       = {2211.04825},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2211-04825.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-06502,
  author       = {Kay L{\"{a}}chler and
                  H{\'{e}}l{\`{e}}ne Lajous and
                  Michael Unser and
                  Meritxell Bach Cuadra and
                  Pol del Aguila Pla},
  title        = {Self-Supervised Isotropic Superresolution Fetal Brain {MRI}},
  journal      = {CoRR},
  volume       = {abs/2211.06502},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2211.06502},
  doi          = {10.48550/ARXIV.2211.06502},
  eprinttype    = {arXiv},
  eprint       = {2211.06502},
  timestamp    = {Wed, 16 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2211-06502.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-14282,
  author       = {Priscille de Dumast and
                  Meritxell Bach Cuadra},
  title        = {Domain generalization in fetal brain {MRI} segmentation {\textbackslash}{\textbackslash}with
                  multi-reconstruction augmentation},
  journal      = {CoRR},
  volume       = {abs/2211.14282},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2211.14282},
  doi          = {10.48550/ARXIV.2211.14282},
  eprinttype    = {arXiv},
  eprint       = {2211.14282},
  timestamp    = {Wed, 30 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2211-14282.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/RosaYBTGC21,
  author       = {Francesco La Rosa and
                  Thomas Yu and
                  Germ{\'{a}}n Barquero and
                  Jean{-}Philippe Thiran and
                  Cristina Granziera and
                  Meritxell Bach Cuadra},
  title        = {{MPRAGE} to {MP2RAGE} {UNI} translation via generative adversarial
                  network improves the automatic tissue and lesion segmentation in multiple
                  sclerosis patients},
  journal      = {Comput. Biol. Medicine},
  volume       = {132},
  pages        = {104297},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.compbiomed.2021.104297},
  doi          = {10.1016/J.COMPBIOMED.2021.104297},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cbm/RosaYBTGC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/YuCPPHGWBCGKT21,
  author       = {Thomas Yu and
                  Erick Jorge Canales{-}Rodr{\'{\i}}guez and
                  Marco Pizzolato and
                  Gian Franco Piredda and
                  Tom Hilbert and
                  Elda Fischi Gomez and
                  Matthias Weigel and
                  Muhamed Barakovic and
                  Meritxell Bach Cuadra and
                  Cristina Granziera and
                  Tobias Kober and
                  Jean{-}Philippe Thiran},
  title        = {Model-informed machine learning for multi-component {T2} relaxometry},
  journal      = {Medical Image Anal.},
  volume       = {69},
  pages        = {101940},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.media.2020.101940},
  doi          = {10.1016/J.MEDIA.2020.101940},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/YuCPPHGWBCGKT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KebiriLAGCTPLFJ21,
  author       = {Hamza Kebiri and
                  H{\'{e}}l{\`{e}}ne Lajous and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Gabriel Girard and
                  Erick Jorge Canales{-}Rodr{\'{\i}}guez and
                  S{\'{e}}bastien Tourbier and
                  Marco Pizzolato and
                  Jean{-}Baptiste Ledoux and
                  Eleonora Fornari and
                  Andr{\'{a}}s Jakab and
                  Meritxell Bach Cuadra},
  editor       = {Suheyla Cetin Karayumak and
                  Daan Christiaens and
                  Matteo Figini and
                  Pamela Guevara and
                  Noemi G. Gyori and
                  Vishwesh Nath and
                  Tomasz Pieciak},
  title        = {Quantitative Evaluation of Enhanced Multi-plane Clinical Fetal Diffusion
                  {MRI} with a Crossing-Fiber Phantom},
  booktitle    = {Computational Diffusion {MRI} - 12th International Workshop, {CDMRI}
                  2021, Held in Conjunction with {MICCAI} 2021, Strasbourg, France,
                  October 1, 2021, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13006},
  pages        = {12--22},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87615-9\_2},
  doi          = {10.1007/978-3-030-87615-9\_2},
  timestamp    = {Wed, 03 Nov 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/KebiriLAGCTPLFJ21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LajousHRTDAYKLH21,
  author       = {H{\'{e}}l{\`{e}}ne Lajous and
                  Tom Hilbert and
                  Christopher W. Roy and
                  S{\'{e}}bastien Tourbier and
                  Priscille de Dumast and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Thomas Yu and
                  Hamza Kebiri and
                  Jean{-}Baptiste Ledoux and
                  Patric Hagmann and
                  Reto Meuli and
                  Vincent Dunet and
                  M{\'{e}}riam Koob and
                  Matthias Stuber and
                  Tobias Kober and
                  Meritxell Bach Cuadra},
  editor       = {Carole H. Sudre and
                  Roxane Licandro and
                  Christian F. Baumgartner and
                  Andrew Melbourne and
                  Adrian V. Dalca and
                  Jana Hutter and
                  Ryutaro Tanno and
                  Esra Abaci Turk and
                  Koen Van Leemput and
                  Jordina Torrents{-}Barrena and
                  William M. Wells III and
                  Christopher K. Macgowan},
  title        = {Simulated Half-Fourier Acquisitions Single-shot Turbo Spin Echo {(HASTE)}
                  of the Fetal Brain: Application to Super-Resolution Reconstruction},
  booktitle    = {Uncertainty for Safe Utilization of Machine Learning in Medical Imaging,
                  and Perinatal Imaging, Placental and Preterm Image Analysis - 3rd
                  International Workshop, {UNSURE} 2021, and 6th International Workshop,
                  {PIPPI} 2021 Held in Conjunction with {MICCAI} 2021, Strasbourg, France,
                  October 1, 2021, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12959},
  pages        = {157--167},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87735-4\_15},
  doi          = {10.1007/978-3-030-87735-4\_15},
  timestamp    = {Wed, 15 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/LajousHRTDAYKLH21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DumastKADKC21,
  author       = {Priscille de Dumast and
                  Hamza Kebiri and
                  Chirine Atat and
                  Vincent Dunet and
                  M{\'{e}}riam Koob and
                  Meritxell Bach Cuadra},
  editor       = {Carole H. Sudre and
                  Roxane Licandro and
                  Christian F. Baumgartner and
                  Andrew Melbourne and
                  Adrian V. Dalca and
                  Jana Hutter and
                  Ryutaro Tanno and
                  Esra Abaci Turk and
                  Koen Van Leemput and
                  Jordina Torrents{-}Barrena and
                  William M. Wells III and
                  Christopher K. Macgowan},
  title        = {Segmentation of the Cortical Plate in Fetal Brain {MRI} with a Topological
                  Loss},
  booktitle    = {Uncertainty for Safe Utilization of Machine Learning in Medical Imaging,
                  and Perinatal Imaging, Placental and Preterm Image Analysis - 3rd
                  International Workshop, {UNSURE} 2021, and 6th International Workshop,
                  {PIPPI} 2021 Held in Conjunction with {MICCAI} 2021, Strasbourg, France,
                  October 1, 2021, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12959},
  pages        = {200--209},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87735-4\_19},
  doi          = {10.1007/978-3-030-87735-4\_19},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/DumastKADKC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/NotoATHHCHR21,
  author       = {Tommaso Di Noto and
                  Chirine Atat and
                  Eduardo Gamito Teiga and
                  Monika Hegi and
                  Andreas Hottinger and
                  Meritxell Bach Cuadra and
                  Patric Hagmann and
                  Jonas Richiardi},
  editor       = {Michael Kamp and
                  Irena Koprinska and
                  Adrien Bibal and
                  Tassadit Bouadi and
                  Beno{\^{\i}}t Fr{\'{e}}nay and
                  Luis Gal{\'{a}}rraga and
                  Jos{\'{e}} Oramas and
                  Linara Adilova and
                  Yamuna Krishnamurthy and
                  Bo Kang and
                  Christine Largeron and
                  Jefrey Lijffijt and
                  Tiphaine Viard and
                  Pascal Welke and
                  Massimiliano Ruocco and
                  Erlend Aune and
                  Claudio Gallicchio and
                  Gregor Schiele and
                  Franz Pernkopf and
                  Michaela Blott and
                  Holger Fr{\"{o}}ning and
                  G{\"{u}}nther Schindler and
                  Riccardo Guidotti and
                  Anna Monreale and
                  Salvatore Rinzivillo and
                  Przemyslaw Biecek and
                  Eirini Ntoutsi and
                  Mykola Pechenizkiy and
                  Bodo Rosenhahn and
                  Christopher L. Buckley and
                  Daniela Cialfi and
                  Pablo Lanillos and
                  Maxwell Ramstead and
                  Tim Verbelen and
                  Pedro M. Ferreira and
                  Giuseppina Andresini and
                  Donato Malerba and
                  Ib{\'{e}}ria Medeiros and
                  Philippe Fournier{-}Viger and
                  M. Saqib Nawaz and
                  Sebasti{\'{a}}n Ventura and
                  Meng Sun and
                  Min Zhou and
                  Valerio Bitetta and
                  Ilaria Bordino and
                  Andrea Ferretti and
                  Francesco Gullo and
                  Giovanni Ponti and
                  Lorenzo Severini and
                  Rita P. Ribeiro and
                  Jo{\~{a}}o Gama and
                  Ricard Gavald{\`{a}} and
                  Lee A. D. Cooper and
                  Naghmeh Ghazaleh and
                  Jonas Richiardi and
                  Damian Roqueiro and
                  Diego Saldana Miranda and
                  Konstantinos Sechidis and
                  Guilherme Gra{\c{c}}a},
  title        = {Diagnostic Surveillance of High-Grade Gliomas: Towards Automated Change
                  Detection Using Radiology Report Classification},
  booktitle    = {Machine Learning and Principles and Practice of Knowledge Discovery
                  in Databases - International Workshops of {ECML} {PKDD} 2021, Virtual
                  Event, September 13-17, 2021, Proceedings, Part {II}},
  series       = {Communications in Computer and Information Science},
  volume       = {1525},
  pages        = {423--436},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-93733-1\_30},
  doi          = {10.1007/978-3-030-93733-1\_30},
  timestamp    = {Tue, 15 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/pkdd/NotoATHHCHR21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-06168,
  author       = {Tommaso Di Noto and
                  Guillaume Marie and
                  S{\'{e}}bastien Tourbier and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Oscar Esteban and
                  Guillaume Saliou and
                  Meritxell Bach Cuadra and
                  Patric Hagmann and
                  Jonas Richiardi},
  title        = {Weak labels and anatomical knowledge: making deep learning practical
                  for intracranial aneurysm detection in {TOF-MRA}},
  journal      = {CoRR},
  volume       = {abs/2103.06168},
  year         = {2021},
  url          = {https://arxiv.org/abs/2103.06168},
  eprinttype    = {arXiv},
  eprint       = {2103.06168},
  timestamp    = {Tue, 16 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2103-06168.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2109-03624,
  author       = {H{\'{e}}l{\`{e}}ne Lajous and
                  Christopher W. Roy and
                  Tom Hilbert and
                  Priscille de Dumast and
                  S{\'{e}}bastien Tourbier and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  J{\'{e}}r{\^{o}}me Yerly and
                  Thomas Yu and
                  Hamza Kebiri and
                  Kelly Payette and
                  Jean{-}Baptiste Ledoux and
                  Reto Meuli and
                  Patric Hagmann and
                  Andr{\'{a}}s Jakab and
                  Vincent Dunet and
                  M{\'{e}}riam Koob and
                  Tobias Kober and
                  Matthias Stuber and
                  Meritxell Bach Cuadra},
  title        = {FaBiAN: {A} Fetal Brain magnetic resonance Acquisition Numerical phantom},
  journal      = {CoRR},
  volume       = {abs/2109.03624},
  year         = {2021},
  url          = {https://arxiv.org/abs/2109.03624},
  eprinttype    = {arXiv},
  eprint       = {2109.03624},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2109-03624.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-04737,
  author       = {Priscille de Dumast and
                  Hamza Kebiri and
                  Kelly Payette and
                  Andr{\'{a}}s Jakab and
                  H{\'{e}}l{\`{e}}ne Lajous and
                  Meritxell Bach Cuadra},
  title        = {Synthetic magnetic resonance images for domain adaptation: Application
                  to fetal brain tissue segmentation},
  journal      = {CoRR},
  volume       = {abs/2111.04737},
  year         = {2021},
  url          = {https://arxiv.org/abs/2111.04737},
  eprinttype    = {arXiv},
  eprint       = {2111.04737},
  timestamp    = {Wed, 10 Nov 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2111-04737.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-11394,
  author       = {Athena Taymourtash and
                  Hamza Kebiri and
                  S{\'{e}}bastien Tourbier and
                  Ernst Schwartz and
                  Karl{-}Heinz Nenning and
                  Roxane Licandro and
                  Daniel Sobotka and
                  H{\'{e}}l{\`{e}}ne Lajous and
                  Priscille de Dumast and
                  Meritxell Bach Cuadra and
                  Georg Langs},
  title        = {4D iterative reconstruction of brain fMRI in the moving fetus},
  journal      = {CoRR},
  volume       = {abs/2111.11394},
  year         = {2021},
  url          = {https://arxiv.org/abs/2111.11394},
  eprinttype    = {arXiv},
  eprint       = {2111.11394},
  timestamp    = {Fri, 26 Nov 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2111-11394.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/DeprezPCECHDTRC20,
  author       = {Maria Deprez and
                  Anthony Price and
                  Daan Christiaens and
                  Georgia Lockwood Estrin and
                  Lucilio Cordero{-}Grande and
                  Jana Hutter and
                  Alessandro Daducci and
                  Jacques{-}Donald Tournier and
                  Mary A. Rutherford and
                  Serena J. Counsell and
                  Meritxell Bach Cuadra and
                  Joseph V. Hajnal},
  title        = {Higher Order Spherical Harmonics Reconstruction of Fetal Diffusion
                  {MRI} With Intensity Correction},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {39},
  number       = {4},
  pages        = {1104--1113},
  year         = {2020},
  url          = {https://doi.org/10.1109/TMI.2019.2943565},
  doi          = {10.1109/TMI.2019.2943565},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/DeprezPCECHDTRC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/NotoMTASCHR20,
  author       = {Tommaso Di Noto and
                  Guillaume Marie and
                  S{\'{e}}bastien Tourbier and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Guillaume Saliou and
                  Meritxell Bach Cuadra and
                  Patric Hagmann and
                  Jonas Richiardi},
  editor       = {Seyed Mostafa Kia and
                  Hassan Mohy{-}ud{-}Din and
                  Ahmed Abdulkadir and
                  Cher Bass and
                  Mohamad Habes and
                  Jane Maryam Rondina and
                  Chantal M. W. Tax and
                  Hongzhi Wang and
                  Thomas Wolfers and
                  Saima Rathore and
                  Madhura Ingalhalikar},
  title        = {An Anatomically-Informed 3D {CNN} for Brain Aneurysm Classification
                  with Weak Labels},
  booktitle    = {Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology
                  - Third International Workshop, {MLCN} 2020, and Second International
                  Workshop, {RNO-AI} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
                  Peru, October 4-8, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12449},
  pages        = {56--66},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-66843-3\_6},
  doi          = {10.1007/978-3-030-66843-3\_6},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/NotoMTASCHR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LajousHRTDYTLPH20,
  author       = {H{\'{e}}l{\`{e}}ne Lajous and
                  Tom Hilbert and
                  Christopher W. Roy and
                  S{\'{e}}bastien Tourbier and
                  Priscille de Dumast and
                  Thomas Yu and
                  Jean{-}Philippe Thiran and
                  Jean{-}Baptiste Ledoux and
                  Davide Piccini and
                  Patric Hagmann and
                  Reto Meuli and
                  Tobias Kober and
                  Matthias Stuber and
                  Ruud B. van Heeswijk and
                  Meritxell Bach Cuadra},
  editor       = {Anne L. Martel and
                  Purang Abolmaesumi and
                  Danail Stoyanov and
                  Diana Mateus and
                  Maria A. Zuluaga and
                  S. Kevin Zhou and
                  Daniel Racoceanu and
                  Leo Joskowicz},
  title        = {{T2} Mapping from Super-Resolution-Reconstructed Clinical Fast Spin
                  Echo Magnetic Resonance Acquisitions},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
                  Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12262},
  pages        = {114--124},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59713-9\_12},
  doi          = {10.1007/978-3-030-59713-9\_12},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/LajousHRTDYTLPH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RosaBATRSC20,
  author       = {Francesco La Rosa and
                  Erin S. Beck and
                  Ahmed Abdulkadir and
                  Jean{-}Philippe Thiran and
                  Daniel S. Reich and
                  Pascal Sati and
                  Meritxell Bach Cuadra},
  editor       = {Anne L. Martel and
                  Purang Abolmaesumi and
                  Danail Stoyanov and
                  Diana Mateus and
                  Maria A. Zuluaga and
                  S. Kevin Zhou and
                  Daniel Racoceanu and
                  Leo Joskowicz},
  title        = {Automated Detection of Cortical Lesions in Multiple Sclerosis Patients
                  with 7T {MRI}},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
                  Proceedings, Part {IV}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12264},
  pages        = {584--593},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59719-1\_57},
  doi          = {10.1007/978-3-030-59719-1\_57},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/RosaBATRSC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-06780,
  author       = {Francesco La Rosa and
                  Erin S. Beck and
                  Ahmed Abdulkadir and
                  Jean{-}Philippe Thiran and
                  Daniel S. Reich and
                  Pascal Sati and
                  Meritxell Bach Cuadra},
  title        = {Automated Detection of Cortical Lesions in Multiple Sclerosis Patients
                  with 7T {MRI}},
  journal      = {CoRR},
  volume       = {abs/2008.06780},
  year         = {2020},
  url          = {https://arxiv.org/abs/2008.06780},
  eprinttype    = {arXiv},
  eprint       = {2008.06780},
  timestamp    = {Fri, 21 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2008-06780.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-12391,
  author       = {Priscille de Dumast and
                  Hamza Kebiri and
                  Chirine Atat and
                  Vincent Dunet and
                  M{\'{e}}riam Koob and
                  Meritxell Bach Cuadra},
  title        = {Segmentation of the cortical plate in fetal brain {MRI} with a topological
                  loss},
  journal      = {CoRR},
  volume       = {abs/2010.12391},
  year         = {2020},
  url          = {https://arxiv.org/abs/2010.12391},
  eprinttype    = {arXiv},
  eprint       = {2010.12391},
  timestamp    = {Tue, 27 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2010-12391.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-15526,
  author       = {Kelly Payette and
                  Priscille de Dumast and
                  Hamza Kebiri and
                  Ivan Ezhov and
                  Johannes C. Paetzold and
                  Suprosanna Shit and
                  Asim Iqbal and
                  Romesa Khan and
                  Raimund Kottke and
                  Patrice Grehten and
                  Hui Ji and
                  Levente Lanczi and
                  Marianna Nagy and
                  Monika Beresova and
                  Thi Dao Nguyen and
                  Giancarlo Natalucci and
                  Theofanis Karayannis and
                  Bjoern H. Menze and
                  Meritxell Bach Cuadra and
                  Andr{\'{a}}s Jakab},
  title        = {A comparison of automatic multi-tissue segmentation methods of the
                  human fetal brain using the FeTA Dataset},
  journal      = {CoRR},
  volume       = {abs/2010.15526},
  year         = {2020},
  url          = {https://arxiv.org/abs/2010.15526},
  eprinttype    = {arXiv},
  eprint       = {2010.15526},
  timestamp    = {Tue, 06 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2010-15526.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-08645,
  author       = {Tommaso Di Noto and
                  Guillaume Marie and
                  S{\'{e}}bastien Tourbier and
                  Yasser Alem{\'{a}}n{-}G{\'{o}}mez and
                  Guillaume Saliou and
                  Meritxell Bach Cuadra and
                  Patric Hagmann and
                  Jonas Richiardi},
  title        = {An anatomically-informed 3D {CNN} for brain aneurysm classification
                  with weak labels},
  journal      = {CoRR},
  volume       = {abs/2012.08645},
  year         = {2020},
  url          = {https://arxiv.org/abs/2012.08645},
  eprinttype    = {arXiv},
  eprint       = {2012.08645},
  timestamp    = {Tue, 05 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2012-08645.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/NguyenPHWRSSC19,
  author       = {Huu{-}Giao Nguyen and
                  Alessia Pica and
                  Jan Hrbacek and
                  Damien C. Weber and
                  Francesco La Rosa and
                  Ann Schalenbourg and
                  Raphael Sznitman and
                  Meritxell Bach Cuadra},
  editor       = {M. Jorge Cardoso and
                  Aasa Feragen and
                  Ben Glocker and
                  Ender Konukoglu and
                  Ipek Oguz and
                  Gozde B. Unal and
                  Tom Vercauteren},
  title        = {A novel segmentation framework for uveal melanoma in magnetic resonance
                  imaging based on class activation maps},
  booktitle    = {International Conference on Medical Imaging with Deep Learning, {MIDL}
                  2019, 8-10 July 2019, London, United Kingdom},
  series       = {Proceedings of Machine Learning Research},
  volume       = {102},
  pages        = {370--379},
  publisher    = {{PMLR}},
  year         = {2019},
  url          = {http://proceedings.mlr.press/v102/nguyen19a.html},
  timestamp    = {Mon, 08 Jul 2019 16:13:41 +0200},
  biburl       = {https://dblp.org/rec/conf/midl/NguyenPHWRSSC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RosaFKRGTC18,
  author       = {Francesco La Rosa and
                  M{\'{a}}rio Jo{\~{a}}o Fartaria and
                  Tobias Kober and
                  Jonas Richiardi and
                  Cristina Granziera and
                  Jean{-}Philippe Thiran and
                  Meritxell Bach Cuadra},
  editor       = {Alessandro Crimi and
                  Spyridon Bakas and
                  Hugo J. Kuijf and
                  Farahani Keyvan and
                  Mauricio Reyes and
                  Theo van Walsum},
  title        = {Shallow vs Deep Learning Architectures for White Matter Lesion Segmentation
                  in the Early Stages of Multiple Sclerosis},
  booktitle    = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
                  Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction
                  with {MICCAI} 2018, Granada, Spain, September 16, 2018, Revised Selected
                  Papers, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11383},
  pages        = {142--151},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-11723-8\_14},
  doi          = {10.1007/978-3-030-11723-8\_14},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/RosaFKRGTC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/NguyenPMSPHWCS18,
  author       = {Huu{-}Giao Nguyen and
                  Alessia Pica and
                  Philippe Maeder and
                  Ann Schalenbourg and
                  Marta Peroni and
                  Jan Hrbacek and
                  Damien C. Weber and
                  Meritxell Bach Cuadra and
                  Raphael Sznitman},
  editor       = {Danail Stoyanov and
                  Zeike Taylor and
                  Francesco Ciompi and
                  Yanwu Xu and
                  Anne L. Martel and
                  Lena Maier{-}Hein and
                  Nasir M. Rajpoot and
                  Jeroen van der Laak and
                  Mitko Veta and
                  Stephen J. McKenna and
                  David R. J. Snead and
                  Emanuele Trucco and
                  Mona Kathryn Garvin and
                  Xin Jan Chen and
                  Hrvoje Bogunovic},
  title        = {Ocular Structures Segmentation from Multi-sequences {MRI} Using 3D
                  Unet with Fully Connected CRFs},
  booktitle    = {Computational Pathology and Ophthalmic Medical Image Analysis - First
                  International Workshop, {COMPAY} 2018, and 5th International Workshop,
                  {OMIA} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain,
                  September 16-20, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11039},
  pages        = {167--175},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00949-6\_20},
  doi          = {10.1007/978-3-030-00949-6\_20},
  timestamp    = {Mon, 12 Apr 2021 07:49:05 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/NguyenPMSPHWCS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-03185,
  author       = {Francesco La Rosa and
                  M{\'{a}}rio Jo{\~{a}}o Fartaria and
                  Tobias Kober and
                  Jonas Richiardi and
                  Cristina Granziera and
                  Jean{-}Philippe Thiran and
                  Meritxell Bach Cuadra},
  title        = {Shallow vs deep learning architectures for white matter lesion segmentation
                  in the early stages of multiple sclerosis},
  journal      = {CoRR},
  volume       = {abs/1809.03185},
  year         = {2018},
  url          = {http://arxiv.org/abs/1809.03185},
  eprinttype    = {arXiv},
  eprint       = {1809.03185},
  timestamp    = {Fri, 05 Oct 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1809-03185.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/TourbierVTHMWCG17,
  author       = {S{\'{e}}bastien Tourbier and
                  Clemente Velasco{-}Annis and
                  Vahid Taimouri and
                  Patric Hagmann and
                  Reto Meuli and
                  Simon K. Warfield and
                  Meritxell Bach Cuadra and
                  Ali Gholipour},
  title        = {Automated template-based brain localization and extraction for fetal
                  brain {MRI} reconstruction},
  journal      = {NeuroImage},
  volume       = {155},
  pages        = {460--472},
  year         = {2017},
  url          = {https://doi.org/10.1016/j.neuroimage.2017.04.004},
  doi          = {10.1016/J.NEUROIMAGE.2017.04.004},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/TourbierVTHMWCG17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/NajdenovskaTJMM17,
  author       = {Elena Najdenovska and
                  Constantin Tuleasca and
                  Jo{\~{a}}o Jorge and
                  Jos{\'{e}} P. Marques and
                  Philippe Maeder and
                  Jean{-}Philippe Thiran and
                  Marc Levivier and
                  Meritxell Bach Cuadra},
  editor       = {M. Jorge Cardoso and
                  Tal Arbel and
                  Xiongbiao Luo and
                  Stefan Wesarg and
                  Tobias Reichl and
                  Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
                  A. Jonathan McLeod and
                  Klaus Drechsler and
                  Terry M. Peters and
                  Marius Erdt and
                  Kensaku Mori and
                  Marius George Linguraru and
                  Andreas Uhl and
                  Cristina Oyarzun Laura and
                  Raj Shekhar},
  title        = {Towards an Automated Segmentation of the Ventro-Intermediate Thalamic
                  Nucleus},
  booktitle    = {Computer Assisted and Robotic Endoscopy and Clinical Image-Based Procedures
                  - 4th International Workshop, {CARE} 2017, and 6th International Workshop,
                  {CLIP} 2017, Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec
                  City, QC, Canada, September 14, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10550},
  pages        = {141--150},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67543-5\_14},
  doi          = {10.1007/978-3-319-67543-5\_14},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/NajdenovskaTJMM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/FartariaRMGKC17,
  author       = {M{\'{a}}rio Jo{\~{a}}o Fartaria and
                  Alexis Roche and
                  Reto Meuli and
                  Cristina Granziera and
                  Tobias Kober and
                  Meritxell Bach Cuadra},
  editor       = {Maxime Descoteaux and
                  Lena Maier{-}Hein and
                  Alfred M. Franz and
                  Pierre Jannin and
                  D. Louis Collins and
                  Simon Duchesne},
  title        = {Segmentation of Cortical and Subcortical Multiple Sclerosis Lesions
                  Based on Constrained Partial Volume Modeling},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2017 - 20th International Conference, Quebec City, QC, Canada, September
                  11-13, 2017, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {10435},
  pages        = {142--149},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-66179-7\_17},
  doi          = {10.1007/978-3-319-66179-7\_17},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/FartariaRMGKC17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/EstebanCDCLS16,
  author       = {Oscar Esteban and
                  Emmanuel Caruyer and
                  Alessandro Daducci and
                  Meritxell Bach Cuadra and
                  Mar{\'{\i}}a J. Ledesma{-}Carbayo and
                  Andr{\'{e}}s Santos},
  title        = {Diffantom: Whole-Brain Diffusion {MRI} Phantoms Derived from Real
                  Datasets of the Human Connectome Project},
  journal      = {Frontiers Neuroinformatics},
  volume       = {10},
  pages        = {4},
  year         = {2016},
  url          = {https://doi.org/10.3389/fninf.2016.00004},
  doi          = {10.3389/FNINF.2016.00004},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fini/EstebanCDCLS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/EstebanZDCLTS16,
  author       = {Oscar Esteban and
                  Dominique Zosso and
                  Alessandro Daducci and
                  Meritxell Bach Cuadra and
                  Mar{\'{\i}}a J. Ledesma{-}Carbayo and
                  Jean{-}Philippe Thiran and
                  Andr{\'{e}}s Santos},
  title        = {Surface-driven registration method for the structure-informed segmentation
                  of diffusion {MR} images},
  journal      = {NeuroImage},
  volume       = {139},
  pages        = {450--461},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.neuroimage.2016.05.011},
  doi          = {10.1016/J.NEUROIMAGE.2016.05.011},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/EstebanZDCLTS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/TourbierBHTMC15,
  author       = {S{\'{e}}bastien Tourbier and
                  Xavier Bresson and
                  Patric Hagmann and
                  Jean{-}Philippe Thiran and
                  Reto Meuli and
                  Meritxell Bach Cuadra},
  title        = {An efficient total variation algorithm for super-resolution in fetal
                  brain {MRI} with adaptive regularization},
  journal      = {NeuroImage},
  volume       = {118},
  pages        = {584--597},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.neuroimage.2015.06.018},
  doi          = {10.1016/J.NEUROIMAGE.2015.06.018},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/TourbierBHTMC15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/ZanetCRMMBCK15,
  author       = {Sandro I. De Zanet and
                  Carlos Ciller and
                  Tobias Rudolph and
                  Philippe Maeder and
                  Francis L. Munier and
                  Aubin Balmer and
                  Meritxell Bach Cuadra and
                  Jens Kowal},
  title        = {Landmark Detection for Fusion of Fundus and {MRI} Toward a Patient-Specific
                  Multimodal Eye Model},
  journal      = {{IEEE} Trans. Biomed. Eng.},
  volume       = {62},
  number       = {2},
  pages        = {532--540},
  year         = {2015},
  url          = {https://doi.org/10.1109/TBME.2014.2359676},
  doi          = {10.1109/TBME.2014.2359676},
  timestamp    = {Wed, 02 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tbe/ZanetCRMMBCK15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/TourbierHCGGSTM15,
  author       = {S{\'{e}}bastien Tourbier and
                  Patric Hagmann and
                  Maud Cagneaux and
                  Laurent Guibaud and
                  Subrahmanyam Gorthi and
                  Marie Schaer and
                  Jean{-}Philippe Thiran and
                  Reto Meuli and
                  Meritxell Bach Cuadra},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin Andreas Styner},
  title        = {Automatic brain extraction in fetal {MRI} using multi-atlas-based
                  segmentation},
  booktitle    = {Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February
                  24-26, 2015},
  series       = {{SPIE} Proceedings},
  volume       = {9413},
  pages        = {94130Y},
  publisher    = {{SPIE}},
  year         = {2015},
  url          = {https://doi.org/10.1117/12.2081777},
  doi          = {10.1117/12.2081777},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/TourbierHCGGSTM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/EstebanWGLTSC14,
  author       = {Oscar Esteban and
                  Gert Wollny and
                  Subrahmanyam Gorthi and
                  Mar{\'{\i}}a J. Ledesma{-}Carbayo and
                  Jean{-}Philippe Thiran and
                  Andr{\'{e}}s Santos and
                  Meritxell Bach Cuadra},
  title        = {{MBIS:} Multivariate Bayesian Image Segmentation tool},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {115},
  number       = {2},
  pages        = {76--94},
  year         = {2014},
  url          = {https://doi.org/10.1016/j.cmpb.2014.03.003},
  doi          = {10.1016/J.CMPB.2014.03.003},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmpb/EstebanWGLTSC14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/RuedaFKYPRFMPTSMCBCSPGKWCPHN14,
  author       = {Sylvia Rueda and
                  Sana Fathima and
                  Caroline L. Knight and
                  Mohammad Yaqub and
                  Aris T. Papageorghiou and
                  Bahbibi Rahmatullah and
                  Alessandro Foi and
                  Matteo Maggioni and
                  Antonietta Pepe and
                  Jussi Tohka and
                  Richard V. Stebbing and
                  John McManigle and
                  Anca Ciurte and
                  Xavier Bresson and
                  Meritxell Bach Cuadra and
                  Changming Sun and
                  Gennady V. Ponomarev and
                  Mikhail S. Gelfand and
                  Marat D. Kazanov and
                  Ching{-}Wei Wang and
                  Hsiang{-}Chou Chen and
                  Chun{-}Wei Peng and
                  Chu{-}Mei Hung and
                  J. Alison Noble},
  title        = {Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation
                  Methods for Biometric Measurements: {A} Grand Challenge},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {33},
  number       = {4},
  pages        = {797--813},
  year         = {2014},
  url          = {https://doi.org/10.1109/TMI.2013.2276943},
  doi          = {10.1109/TMI.2013.2276943},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/RuedaFKYPRFMPTSMCBCSPGKWCPHN14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/EstebanDCOLCS14,
  author       = {Oscar Esteban and
                  Alessandro Daducci and
                  Emmanuel Caruyer and
                  Kieran O'Brien and
                  Mar{\'{\i}}a J. Ledesma{-}Carbayo and
                  Meritxell Bach Cuadra and
                  Andr{\'{e}}s Santos},
  title        = {Simulation-based evaluation of susceptibility distortion correction
                  methods in diffusion {MRI} for connectivity analysis},
  booktitle    = {{IEEE} 11th International Symposium on Biomedical Imaging, {ISBI}
                  2014, April 29 - May 2, 2014, Beijing, Chin, Beijing, China},
  pages        = {738--741},
  publisher    = {{IEEE}},
  year         = {2014},
  url          = {https://doi.org/10.1109/ISBI.2014.6867976},
  doi          = {10.1109/ISBI.2014.6867976},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/EstebanDCOLCS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/TourbierBHTMC14,
  author       = {S{\'{e}}bastien Tourbier and
                  Xavier Bresson and
                  Patric Hagmann and
                  Jean{-}Philippe Thiran and
                  Reto Meuli and
                  Meritxell Bach Cuadra},
  editor       = {Polina Golland and
                  Nobuhiko Hata and
                  Christian Barillot and
                  Joachim Hornegger and
                  Robert D. Howe},
  title        = {Efficient Total Variation Algorithm for Fetal Brain {MRI} Reconstruction},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2014 - 17th International Conference, Boston, MA, USA, September 14-18,
                  2014, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8674},
  pages        = {252--259},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-10470-6\_32},
  doi          = {10.1007/978-3-319-10470-6\_32},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/TourbierBHTMC14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/EstebanWGLTSC14,
  author       = {Oscar Esteban and
                  Gert Wollny and
                  Subrahmanyam Gorthi and
                  Mar{\'{\i}}a J. Ledesma{-}Carbayo and
                  Jean{-}Philippe Thiran and
                  Andr{\'{e}}s Santos and
                  Meritxell Bach Cuadra},
  title        = {{MBIS:} Multivariate Bayesian Image Segmentation Tool},
  journal      = {CoRR},
  volume       = {abs/1404.0600},
  year         = {2014},
  url          = {http://arxiv.org/abs/1404.0600},
  eprinttype    = {arXiv},
  eprint       = {1404.0600},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/EstebanWGLTSC14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spl/GorthiCTAT13,
  author       = {Subrahmanyam Gorthi and
                  Meritxell Bach Cuadra and
                  Pierre{-}Alain Tercier and
                  Abdelkarim Allal and
                  Jean{-}Philippe Thiran},
  title        = {Weighted Shape-Based Averaging With Neighborhood Prior Model for Multiple
                  Atlas Fusion-Based Medical Image Segmentation},
  journal      = {{IEEE} Signal Process. Lett.},
  volume       = {20},
  number       = {11},
  pages        = {1036--1039},
  year         = {2013},
  url          = {https://doi.org/10.1109/LSP.2013.2279269},
  doi          = {10.1109/LSP.2013.2279269},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/spl/GorthiCTAT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/GorthiCSTAT12,
  author       = {Subrahmanyam Gorthi and
                  Meritxell Bach Cuadra and
                  Ulrike Schick and
                  Pierre{-}Alain Tercier and
                  Abdelkarim Allal and
                  Jean{-}Philippe Thiran},
  title        = {Evaluation of atlas fusion strategies for segmentation of head and
                  neck lymph nodes for radiotherapy planning},
  booktitle    = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano
                  to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings},
  pages        = {1276--1279},
  publisher    = {{IEEE}},
  year         = {2012},
  url          = {https://doi.org/10.1109/ISBI.2012.6235795},
  doi          = {10.1109/ISBI.2012.6235795},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/GorthiCSTAT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/CabezasOLFC11,
  author       = {Mariano Cabezas and
                  Arnau Oliver and
                  Xavier Llad{\'{o}} and
                  Jordi Freixenet and
                  Meritxell Bach Cuadra},
  title        = {A review of atlas-based segmentation for magnetic resonance brain
                  images},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {104},
  number       = {3},
  pages        = {158},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.cmpb.2011.07.015},
  doi          = {10.1016/J.CMPB.2011.07.015},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cmpb/CabezasOLFC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/GorthiDBCCPAT11,
  author       = {Subrahmanyam Gorthi and
                  Valerie Duay and
                  Xavier Bresson and
                  Meritxell Bach Cuadra and
                  F. Javier S{\'{a}}nchez Castro and
                  Claudio Pollo and
                  Abdelkarim Allal and
                  Jean{-}Philippe Thiran},
  title        = {Active deformation fields: Dense deformation field estimation for
                  atlas-based segmentation using the active contour framework},
  journal      = {Medical Image Anal.},
  volume       = {15},
  number       = {6},
  pages        = {787--800},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.media.2011.05.008},
  doi          = {10.1016/J.MEDIA.2011.05.008},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/GorthiDBCCPAT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/RocheRCK11,
  author       = {Alexis Roche and
                  Delphine Ribes and
                  Meritxell Bach Cuadra and
                  Gunnar Kr{\"{u}}ger},
  title        = {On the convergence of EM-like algorithms for image segmentation using
                  Markov random fields},
  journal      = {Medical Image Anal.},
  volume       = {15},
  number       = {6},
  pages        = {830--839},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.media.2011.05.002},
  doi          = {10.1016/J.MEDIA.2011.05.002},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/RocheRCK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/GorthiTC11,
  author       = {Subrahmanyam Gorthi and
                  Jean{-}Philippe Thiran and
                  Meritxell Bach Cuadra},
  editor       = {Beno{\^{\i}}t Macq and
                  Peter Schelkens},
  title        = {Comparison of energy minimization methods for 3-D brain tissue classification},
  booktitle    = {18th {IEEE} International Conference on Image Processing, {ICIP} 2011,
                  Brussels, Belgium, September 11-14, 2011},
  pages        = {57--60},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ICIP.2011.6116615},
  doi          = {10.1109/ICIP.2011.6116615},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/GorthiTC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/FerrareseDCLGTM11,
  author       = {Francesca Pizzorni Ferrarese and
                  Alessandro Daducci and
                  Meritxell Bach Cuadra and
                  Alia Lemkaddem and
                  Cristina Granziera and
                  Jean{-}Philippe Thiran and
                  Gloria Menegaz},
  editor       = {Beno{\^{\i}}t Macq and
                  Peter Schelkens},
  title        = {Towards a diffusion image processing validation and accuracy prediction
                  framework},
  booktitle    = {18th {IEEE} International Conference on Image Processing, {ICIP} 2011,
                  Brussels, Belgium, September 11-14, 2011},
  pages        = {2269--2272},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ICIP.2011.6116091},
  doi          = {10.1109/ICIP.2011.6116091},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icip/FerrareseDCLGTM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/CiurteHNPMTBC11,
  author       = {Anca Ciurte and
                  Nawal Houhou and
                  Sergiu Nedevschi and
                  Alessia Pica and
                  Francis L. Munier and
                  Jean{-}Philippe Thiran and
                  Xavier Bresson and
                  Meritxell Bach Cuadra},
  title        = {An efficient segmentation method for ultrasound images based on a
                  semi-supervised approach and patch-based features},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {969--972},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872564},
  doi          = {10.1109/ISBI.2011.5872564},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/CiurteHNPMTBC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/CardenesGC09,
  author       = {Rub{\'{e}}n C{\'{a}}rdenes and
                  Rodrigo de Luis Garc{\'{\i}}a and
                  Meritxell Bach Cuadra},
  title        = {A multidimensional segmentation evaluation for medical image data},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {96},
  number       = {2},
  pages        = {108--124},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.cmpb.2009.04.009},
  doi          = {10.1016/J.CMPB.2009.04.009},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cmpb/CardenesGC09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jstsp/GorthiDHCSBAT09,
  author       = {Subrahmanyam Gorthi and
                  Valerie Duay and
                  Nawal Houhou and
                  Meritxell Bach Cuadra and
                  Ulrike Schick and
                  Minerva Becker and
                  Abdelkarim Allal and
                  Jean{-}Philippe Thiran},
  title        = {Segmentation of Head and Neck Lymph Node Regions for Radiotherapy
                  Planning Using Active Contour-Based Atlas Registration},
  journal      = {{IEEE} J. Sel. Top. Signal Process.},
  volume       = {3},
  number       = {1},
  pages        = {135--147},
  year         = {2009},
  url          = {https://doi.org/10.1109/JSTSP.2008.2011104},
  doi          = {10.1109/JSTSP.2008.2011104},
  timestamp    = {Thu, 18 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jstsp/GorthiDHCSBAT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/SchaerCTLET08,
  author       = {Marie Schaer and
                  Meritxell Bach Cuadra and
                  Lucas Tamarit and
                  Fran{\c{c}}ois Lazeyras and
                  Stephan Eliez and
                  Jean{-}Philippe Thiran},
  title        = {A Surface-Based Approach to Quantify Local Cortical Gyrification},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {27},
  number       = {2},
  pages        = {161--170},
  year         = {2008},
  url          = {https://doi.org/10.1109/TMI.2007.903576},
  doi          = {10.1109/TMI.2007.903576},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/SchaerCTLET08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/FerrarioCSHZEGT08,
  author       = {D. Ferrario and
                  Meritxell Bach Cuadra and
                  Marie Schaer and
                  Nawal Houhou and
                  Dominique Zosso and
                  Stephan Eliez and
                  Laurent Guibaud and
                  Jean{-}Philippe Thiran},
  title        = {Brain surface segmentation of Magnetic Resonance images of the fetus},
  booktitle    = {2008 16th European Signal Processing Conference, {EUSIPCO} 2008, Lausanne,
                  Switzerland, August 25-29, 2008},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2008},
  url          = {https://ieeexplore.ieee.org/document/7080427/},
  timestamp    = {Mon, 09 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/eusipco/FerrarioCSHZEGT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/PinaCKJGT08,
  author       = {X. Pena Pina and
                  Meritxell Bach Cuadra and
                  Nicolas Kunz and
                  Nathalie Just and
                  Rolf Gruetter and
                  Jean{-}Philippe Thiran},
  title        = {Fast bias field correction for 9.4 tesla magnetic resonance imaging},
  booktitle    = {2008 16th European Signal Processing Conference, {EUSIPCO} 2008, Lausanne,
                  Switzerland, August 25-29, 2008},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2008},
  url          = {https://ieeexplore.ieee.org/document/7080621/},
  timestamp    = {Mon, 09 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/eusipco/PinaCKJGT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DuayBCPCT08,
  author       = {Valerie Duay and
                  Xavier Bresson and
                  F. Javier S{\'{a}}nchez Castro and
                  Claudio Pollo and
                  Meritxell Bach Cuadra and
                  Jean{-}Philippe Thiran},
  editor       = {Dimitris N. Metaxas and
                  Leon Axel and
                  Gabor Fichtinger and
                  G{\'{a}}bor Sz{\'{e}}kely},
  title        = {An Active Contour-Based Atlas Registration Model Applied to Automatic
                  Subthalamic Nucleus Targeting on {MRI:} Method and Validation},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2008, 11th International Conference, New York, NY, USA, September
                  6-10, 2008, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5242},
  pages        = {980--988},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-85990-1\_118},
  doi          = {10.1007/978-3-540-85990-1\_118},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DuayBCPCT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ZossoCCAJT08,
  author       = {Dominique Zosso and
                  Beno{\^{\i}}t Le Callennec and
                  Meritxell Bach Cuadra and
                  Kamiar Aminian and
                  Brigitte M. Jolles and
                  Jean{-}Philippe Thiran},
  editor       = {Joseph M. Reinhardt and
                  Josien P. W. Pluim},
  title        = {Bi-planar 2D-to-3D registration in Fourier domain for stereoscopic
                  x-ray motion tracking},
  booktitle    = {Medical Imaging 2008: Image Processing, San Diego, California, United
                  States, 16-21 February 2008},
  series       = {{SPIE} Proceedings},
  volume       = {6914},
  pages        = {69140I},
  publisher    = {{SPIE}},
  year         = {2008},
  url          = {https://doi.org/10.1117/12.769469},
  doi          = {10.1117/12.769469},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/ZossoCCAJT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/caip/CardenesBCMLACB07,
  author       = {Rub{\'{e}}n C{\'{a}}rdenes and
                  Meritxell Bach and
                  Ying Chi and
                  Ioannis Marras and
                  Rodrigo de Luis Garc{\'{\i}}a and
                  Mats Anderson and
                  Peter Cashman and
                  Matthieu Bultelle},
  editor       = {Walter G. Kropatsch and
                  Martin Kampel and
                  Allan Hanbury},
  title        = {Multimodal Evaluation for Medical Image Segmentation},
  booktitle    = {Computer Analysis of Images and Patterns, 12th International Conference,
                  {CAIP} 2007, Vienna, Austria, August 27-29, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4673},
  pages        = {229--236},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-74272-2\_29},
  doi          = {10.1007/978-3-540-74272-2\_29},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/caip/CardenesBCMLACB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/DuayBHCT07,
  author       = {Valerie Duay and
                  Xavier Bresson and
                  Nawal Houhou and
                  Meritxell Bach Cuadra and
                  Jean{-}Philippe Thiran},
  title        = {Registration of multiple regions derived from the optical flow model
                  and the active contour framework},
  booktitle    = {15th European Signal Processing Conference, {EUSIPCO} 2007, Poznan,
                  Poland, September 3-7, 2007},
  pages        = {282--286},
  publisher    = {{IEEE}},
  year         = {2007},
  url          = {https://ieeexplore.ieee.org/document/7098809/},
  timestamp    = {Mon, 09 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/eusipco/DuayBHCT07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/CuadraCDMPT06,
  author       = {Meritxell Bach Cuadra and
                  Mathieu De Craene and
                  Valerie Duay and
                  Beno{\^{\i}}t Macq and
                  Claudio Pollo and
                  Jean{-}Philippe Thiran},
  title        = {Dense deformation field estimation for atlas-based segmentation of
                  pathological {MR} brain images},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {84},
  number       = {2-3},
  pages        = {66--75},
  year         = {2006},
  url          = {https://doi.org/10.1016/j.cmpb.2006.08.003},
  doi          = {10.1016/J.CMPB.2006.08.003},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmpb/CuadraCDMPT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/CastroPMMCCVT06,
  author       = {F. Javier S{\'{a}}nchez Castro and
                  Claudio Pollo and
                  Reto Meuli and
                  Philippe Maeder and
                  Olivier Cuisenaire and
                  Meritxell Bach Cuadra and
                  Jean{-}Guy Villemure and
                  Jean{-}Philippe Thiran},
  title        = {A Cross Validation Study of Deep Brain Stimulation Targeting: From
                  Experts to Atlas-Based, Segmentation-Based and Automatic Registration
                  Algorithms},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {25},
  number       = {11},
  pages        = {1440--1450},
  year         = {2006},
  url          = {https://doi.org/10.1109/TMI.2006.882129},
  doi          = {10.1109/TMI.2006.882129},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/CastroPMMCCVT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/DuayCBT06,
  author       = {Valerie Duay and
                  Meritxell Bach Cuadra and
                  Xavier Bresson and
                  Jean{-}Philippe Thiran},
  title        = {Dense deformation field estimation for atlas registration using the
                  active contour framework},
  booktitle    = {14th European Signal Processing Conference, {EUSIPCO} 2006, Florence,
                  Italy, September 4-8, 2006},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2006},
  url          = {https://ieeexplore.ieee.org/document/7071443/},
  timestamp    = {Mon, 09 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/eusipco/DuayCBT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/PolloCCVT05,
  author       = {Claudio Pollo and
                  Meritxell Bach Cuadra and
                  Olivier Cuisenaire and
                  Jean{-}Guy Villemure and
                  Jean{-}Philippe Thiran},
  title        = {Segmentation of brain structures in presence of a space-occupying
                  lesion},
  journal      = {NeuroImage},
  volume       = {24},
  number       = {4},
  pages        = {990--996},
  year         = {2005},
  url          = {https://doi.org/10.1016/j.neuroimage.2004.10.004},
  doi          = {10.1016/J.NEUROIMAGE.2004.10.004},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/PolloCCVT05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/CuadraCBCT05,
  author       = {Meritxell Bach Cuadra and
                  Leila Cammoun and
                  Torsten Butz and
                  Olivier Cuisenaire and
                  Jean{-}Philippe Thiran},
  title        = {Comparison and validation of tissue modelization and statistical classification
                  methods in T1-weighted {MR} brain images},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {24},
  number       = {12},
  pages        = {1548--1565},
  year         = {2005},
  url          = {https://doi.org/10.1109/TMI.2005.857652},
  doi          = {10.1109/TMI.2005.857652},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/CuadraCBCT05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/GigandetCPCCT05,
  author       = {Xavier Gigandet and
                  Meritxell Bach Cuadra and
                  Abram Pointet and
                  Leila Cammoun and
                  R{\'{e}}gis Caloz and
                  Jean{-}Philippe Thiran},
  title        = {Region-based satellite image classification: method and validation},
  booktitle    = {Proceedings of the 2005 International Conference on Image Processing,
                  {ICIP} 2005, Genoa, Italy, September 11-14, 2005},
  pages        = {832--835},
  publisher    = {{IEEE}},
  year         = {2005},
  url          = {https://doi.org/10.1109/ICIP.2005.1530521},
  doi          = {10.1109/ICIP.2005.1530521},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/GigandetCPCCT05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CastroPMMCCVT05,
  author       = {F. Javier S{\'{a}}nchez Castro and
                  Claudio Pollo and
                  Reto Meuli and
                  Philippe Maeder and
                  Meritxell Bach Cuadra and
                  Olivier Cuisenaire and
                  Jean{-}Guy Villemure and
                  Jean{-}Philippe Thiran},
  editor       = {James S. Duncan and
                  Guido Gerig},
  title        = {Cross Validation of Experts Versus Registration Methods for Target
                  Localization in Deep Brain Stimulation},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2005, 8th International Conference, Palm Springs, CA, USA, October
                  26-29, 2005, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {3749},
  pages        = {417--424},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11566465\_52},
  doi          = {10.1007/11566465\_52},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/CastroPMMCCVT05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/CuadraPBCVT04,
  author       = {Meritxell Bach Cuadra and
                  Claudio Pollo and
                  Anton Bardera and
                  Olivier Cuisenaire and
                  Jean{-}Guy Villemure and
                  Jean{-}Philippe Thiran},
  title        = {Atlas-based segmentation of pathological {MR} brain images using a
                  model of lesion growth},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {23},
  number       = {10},
  pages        = {1301--1314},
  year         = {2004},
  url          = {https://doi.org/10.1109/TMI.2004.834618},
  doi          = {10.1109/TMI.2004.834618},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/CuadraPBCVT04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/CuadraPBCVT03,
  author       = {Meritxell Bach Cuadra and
                  Claudio Pollo and
                  Anton Bardera and
                  Olivier Cuisenaire and
                  Jean{-}Guy Villemure and
                  Jean{-}Philippe Thiran},
  title        = {Atlas-based segmentation of pathological brain {MR} images},
  booktitle    = {Proceedings of the 2003 International Conference on Image Processing,
                  {ICIP} 2003, Barcelona, Catalonia, Spain, September 14-18, 2003},
  pages        = {573--576},
  publisher    = {{IEEE}},
  year         = {2003},
  url          = {https://doi.org/10.1109/ICIP.2003.1247026},
  doi          = {10.1109/ICIP.2003.1247026},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/CuadraPBCVT03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CuadraPSBT02,
  author       = {Meritxell Bach Cuadra and
                  Bram Platel and
                  Eduardo Solanas and
                  Torsten Butz and
                  Jean{-}Philippe Thiran},
  editor       = {Takeyoshi Dohi and
                  Ron Kikinis},
  title        = {Validation of Tissue Modelization and Classification Techniques in
                  T1-Weighted {MR} Brain Images},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2002, 5th International Conference, Tokyo, Japan, September 25-28,
                  2002, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {2488},
  pages        = {290--297},
  publisher    = {Springer},
  year         = {2002},
  url          = {https://doi.org/10.1007/3-540-45786-0\_36},
  doi          = {10.1007/3-540-45786-0\_36},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CuadraPSBT02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CuadraGHPVDT02,
  author       = {Meritxell Bach Cuadra and
                  J. Gomez and
                  Patric Hagmann and
                  Claudio Pollo and
                  Jean{-}Guy Villemure and
                  Benoit M. Dawant and
                  Jean{-}Philippe Thiran},
  editor       = {Takeyoshi Dohi and
                  Ron Kikinis},
  title        = {Atlas-Based Segmentation of Pathological Brains Using a Model of Tumor
                  Growth},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2002, 5th International Conference, Tokyo, Japan, September 25-28,
                  2002, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {2488},
  pages        = {380--387},
  publisher    = {Springer},
  year         = {2002},
  url          = {https://doi.org/10.1007/3-540-45786-0\_47},
  doi          = {10.1007/3-540-45786-0\_47},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CuadraGHPVDT02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/CuadraCMT01,
  author       = {Meritxell Bach Cuadra and
                  Olivier Cuisenaire and
                  Reto Meuli and
                  Jean{-}Philippe Thiran},
  title        = {Automatic segmentation of internal structures of the brain in {MR}
                  images using a tandem of affine and non-rigid registration of an anatomical
                  brain atlas},
  booktitle    = {Proceedings of the 2001 International Conference on Image Processing,
                  {ICIP} 2001, Thessaloniki, Greece, October 7-10, 2001},
  pages        = {1083--1086},
  publisher    = {{IEEE}},
  year         = {2001},
  url          = {https://doi.org/10.1109/ICIP.2001.958315},
  doi          = {10.1109/ICIP.2001.958315},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/CuadraCMT01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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