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ORCIDBibTeX records: Kathryn Dempsey
@inproceedings{DBLP:conf/iwbbio/CooperPA15,
author = {Kathryn Dempsey Cooper and
Sachin Pawaskar and
Hesham H. Ali},
editor = {Francisco M. Ortu{\~{n}}o Guzman and
Ignacio Rojas},
title = {Identification of Biologically Significant Elements Using Correlation
Networks in High Performance Computing Environments},
booktitle = {Bioinformatics and Biomedical Engineering - Third International Conference,
{IWBBIO} 2015, Granada, Spain, April 15-17, 2015. Proceedings, Part
{II}},
series = {Lecture Notes in Computer Science},
volume = {9044},
pages = {607--619},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16480-9\_58},
doi = {10.1007/978-3-319-16480-9\_58},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwbbio/CooperPA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DempseyA14,
author = {Kathryn Dempsey and
Hesham H. Ali},
title = {Identifying aging-related genes in mouse hippocampus using gateway
nodes},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {62},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-62},
doi = {10.1186/1752-0509-8-62},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DempseyA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/DempseyA14,
author = {Kathryn Dempsey and
Hesham H. Ali},
editor = {Oscar Pastor and
Christine Sinoquet and
Guy Plantier and
Tanja Schultz and
Ana L. N. Fred and
Hugo Gamboa},
title = {On the Robustness of the Biological Correlation Network Model},
booktitle = {{BIOINFORMATICS} 2014 - Proceedings of the International Conference
on Bioinformatics Models, Methods and Algorithms, ESEO, Angers, Loire
Valley, France, 3-6 March, 2014},
pages = {186--195},
publisher = {SciTePress},
year = {2014},
url = {https://doi.org/10.5220/0004805801860195},
doi = {10.5220/0004805801860195},
timestamp = {Thu, 21 Jan 2021 13:58:22 +0100},
biburl = {https://dblp.org/rec/conf/biostec/DempseyA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/AliD14,
author = {Hesham H. Ali and
Kathryn Dempsey},
title = {Introduction to Data Analysis and Visualization in Biomedical Informatics
Minitrack},
booktitle = {47th Hawaii International Conference on System Sciences, {HICSS} 2014,
Waikoloa, HI, USA, January 6-9, 2014},
pages = {2547},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/HICSS.2014.320},
doi = {10.1109/HICSS.2014.320},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/AliD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/NoteboomDF14,
author = {Cherie Noteboom and
Kathryn Dempsey and
Ann L. Fruhling},
title = {Recognizing Patient Safety Importance through Instrument Validation
on Physicians' Assessment of an {EHR}},
booktitle = {47th Hawaii International Conference on System Sciences, {HICSS} 2014,
Waikoloa, HI, USA, January 6-9, 2014},
pages = {2828--2837},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/HICSS.2014.354},
doi = {10.1109/HICSS.2014.354},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/NoteboomDF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcomputing/DempseyUB013,
author = {Kathryn Dempsey and
Vladimir Ufimtsev and
Sanjukta Bhowmick and
Hesham Ali},
title = {A Parallel Template for Implementing filters for biological Correlation
Networks},
journal = {Int. J. Comput.},
volume = {12},
number = {4},
pages = {285--297},
year = {2013},
url = {https://doi.org/10.47839/ijc.12.4.608},
doi = {10.47839/IJC.12.4.608},
timestamp = {Mon, 15 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcomputing/DempseyUB013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DempseyA13,
author = {Kathryn Dempsey and
Hesham H. Ali},
editor = {Jing Gao},
title = {Identifying Pathway Proteins in Networks using Convergence},
booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
2013},
pages = {853},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2506583.2506695},
doi = {10.1145/2506583.2506695},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/DempseyA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/AliD13,
author = {Hesham H. Ali and
Kathryn Dempsey},
title = {Introduction to Data Analysis and Visualization in Biomedical Informatics
Minitrack},
booktitle = {46th Hawaii International Conference on System Sciences, {HICSS} 2013,
Wailea, HI, USA, January 7-10, 2013},
pages = {2381},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/HICSS.2013.8},
doi = {10.1109/HICSS.2013.8},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/AliD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/DempseyTCEBA13,
author = {Kathryn Dempsey and
Ishwor Thapa and
Claudia Cortes and
Zach Eriksen and
Dhundy Bastola and
Hesham H. Ali},
editor = {Wei Ding and
Takashi Washio and
Hui Xiong and
George Karypis and
Bhavani Thuraisingham and
Diane J. Cook and
Xindong Wu},
title = {On Mining Biological Signals Using Correlation Networks},
booktitle = {13th {IEEE} International Conference on Data Mining Workshops, {ICDM}
Workshops, TX, USA, December 7-10, 2013},
pages = {327--334},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICDMW.2013.125},
doi = {10.1109/ICDMW.2013.125},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/DempseyTCEBA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/KhazanchiDTA13,
author = {Rohan Khazanchi and
Kathryn Dempsey and
Ishwor Thapa and
Hesham H. Ali},
editor = {Wei Ding and
Takashi Washio and
Hui Xiong and
George Karypis and
Bhavani Thuraisingham and
Diane J. Cook and
Xindong Wu},
title = {On Identifying and Analyzing Significant Nodes in Protein-Protein
Interaction Networks},
booktitle = {13th {IEEE} International Conference on Data Mining Workshops, {ICDM}
Workshops, TX, USA, December 7-10, 2013},
pages = {343--348},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICDMW.2013.126},
doi = {10.1109/ICDMW.2013.126},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/KhazanchiDTA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/WestDBA13,
author = {Sean West and
Kathryn Dempsey and
Sanjukta Bhowmick and
Hesham H. Ali},
editor = {Wei Ding and
Takashi Washio and
Hui Xiong and
George Karypis and
Bhavani Thuraisingham and
Diane J. Cook and
Xindong Wu},
title = {Analysis of Incrementally Generated Clusters in Biological Networks
Using Graph-Theoretic Filters and Ontology Enrichment},
booktitle = {13th {IEEE} International Conference on Data Mining Workshops, {ICDM}
Workshops, TX, USA, December 7-10, 2013},
pages = {584--591},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICDMW.2013.147},
doi = {10.1109/ICDMW.2013.147},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/WestDBA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeehpcs/DempseyCSBA13,
author = {Kathryn Dempsey and
Tzu{-}Yi Chen and
Sriram Srinivasan and
Sanjukta Bhowmick and
Hesham H. Ali},
title = {A structure-preserving hybrid-chordal filter for sampling in correlation
networks},
booktitle = {International Conference on High Performance Computing {\&} Simulation,
{HPCS} 2013, Helsinki, Finland, July 1-5, 2013},
pages = {243--250},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/HPCSim.2013.6641422},
doi = {10.1109/HPCSIM.2013.6641422},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ieeehpcs/DempseyCSBA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/DempseyTBA12,
author = {Kathryn Dempsey and
Ishwor Thapa and
Dhundy Bastola and
Hesham H. Ali},
title = {Functional identification in correlation networks using gene ontology
edge annotation},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {5},
number = {3/4},
pages = {222--244},
year = {2012},
url = {https://doi.org/10.1504/IJCBDD.2012.049206},
doi = {10.1504/IJCBDD.2012.049206},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/DempseyTBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/DempseyCBA12,
author = {Kathryn Dempsey and
Tzu{-}Yi Chen and
Sanjukta Bhowmick and
Hesham H. Ali},
title = {On the design of advanced filters for biological networks using graph
theoretic properties},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012},
pages = {1--5},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBM.2012.6392617},
doi = {10.1109/BIBM.2012.6392617},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/DempseyCBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/HalappanavarFDAB12,
author = {Mahantesh Halappanavar and
John Feo and
Kathryn Dempsey and
Hesham H. Ali and
Sanjukta Bhowmick},
title = {A Novel Multithreaded Algorithm for Extracting Maximal Chordal Subgraphs},
booktitle = {41st International Conference on Parallel Processing, {ICPP} 2012,
Pittsburgh, PA, USA, September 10-13, 2012},
pages = {58--67},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICPP.2012.10},
doi = {10.1109/ICPP.2012.10},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpp/HalappanavarFDAB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/DempseyDBA12,
author = {Kathryn Dempsey and
Kanimathi Duraisamy and
Sanjukta Bhowmick and
Hesham H. Ali},
title = {The Development of Parallel Adaptive Sampling Algorithms for Analyzing
Biological Networks},
booktitle = {26th {IEEE} International Parallel and Distributed Processing Symposium
Workshops {\&} PhD Forum, {IPDPS} 2012, Shanghai, China, May 21-25,
2012},
pages = {725--734},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/IPDPSW.2012.90},
doi = {10.1109/IPDPSW.2012.90},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/DempseyDBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/procedia/DempseyBA12,
author = {Kathryn Dempsey and
Sanjukta Bhowmick and
Hesham H. Ali},
editor = {Hesham H. Ali and
Yong Shi and
Deepak Khazanchi and
Michael Lees and
G. Dick van Albada and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {Function-preserving Filters for Sampling in Biological Networks},
booktitle = {Proceedings of the International Conference on Computational Science,
{ICCS} 2012, Omaha, Nebraska, USA, 4-6 June, 2012},
series = {Procedia Computer Science},
volume = {9},
pages = {587--595},
publisher = {Elsevier},
year = {2012},
url = {https://doi.org/10.1016/j.procs.2012.04.063},
doi = {10.1016/J.PROCS.2012.04.063},
timestamp = {Thu, 08 Jul 2021 16:04:01 +0200},
biburl = {https://dblp.org/rec/journals/procedia/DempseyBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/DempseyTBA11,
author = {Kathryn Dempsey and
Ishwor Thapa and
Dhundy Bastola and
Hesham H. Ali},
title = {Identifying modular function via edge annotation in gene correlation
networks using Gene Ontology search},
booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
pages = {255--261},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBMW.2011.6112384},
doi = {10.1109/BIBMW.2011.6112384},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/DempseyTBA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/DempseyA11,
author = {Kathryn Dempsey and
Hesham H. Ali},
title = {Evaluation of essential genes in correlation networks using measures
of centrality},
booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
pages = {509--515},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBMW.2011.6112421},
doi = {10.1109/BIBMW.2011.6112421},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/DempseyA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/DempseyBBA11,
author = {Kathryn Dempsey and
Stephen Bonasera and
Dhundy Bastola and
Hesham H. Ali},
title = {A Novel Correlation Networks Approach for the Identification of Gene
Targets},
booktitle = {44th Hawaii International International Conference on Systems Science
{(HICSS-44} 2011), Proceedings, 4-7 January 2011, Koloa, Kauai, HI,
{USA}},
pages = {1--8},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/HICSS.2011.20},
doi = {10.1109/HICSS.2011.20},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/DempseyBBA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeehpcs/DuraisamyDAB11,
author = {Kanimathi Duraisamy and
Kathryn Dempsey and
Hesham H. Ali and
Sanjukta Bhowmick},
editor = {Waleed W. Smari and
John P. McIntire},
title = {A noise reducing sampling approach for uncovering critical properties
in large scale biological networks},
booktitle = {2011 International Conference on High Performance Computing {\&}
Simulation, {HPCS} 2012, Istanbul, Turkey, July 4-8, 2011},
pages = {721--728},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/HPCSim.2011.5999898},
doi = {10.1109/HPCSIM.2011.5999898},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ieeehpcs/DuraisamyDAB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/procedia/DempseyDAB11,
author = {Kathryn Dempsey and
Kanimathi Duraisamy and
Hesham H. Ali and
Sanjukta Bhowmick},
editor = {Mitsuhisa Sato and
Satoshi Matsuoka and
Peter M. A. Sloot and
G. Dick van Albada and
Jack J. Dongarra},
title = {A Parallel Graph Sampling Algorithm for Analyzing Gene Correlation
Networks},
booktitle = {Proceedings of the International Conference on Computational Science,
{ICCS} 2011, Nanyang Technological University, Singapore, 1-3 June,
2011},
series = {Procedia Computer Science},
volume = {4},
pages = {136--145},
publisher = {Elsevier},
year = {2011},
url = {https://doi.org/10.1016/j.procs.2011.04.015},
doi = {10.1016/J.PROCS.2011.04.015},
timestamp = {Thu, 08 Jul 2021 16:04:01 +0200},
biburl = {https://dblp.org/rec/journals/procedia/DempseyDAB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/DempseyCHA11,
author = {Kathryn Dempsey and
Benjamin Currall and
Richard Hallworth and
Hesham H. Ali},
editor = {Limin Angela Liu and
Dong{-}Qing Wei and
Yixue Li and
Huimin Lei},
title = {A New Approach for Sequence Analysis: Illustrating an Expanded Bioinformatics
View through Exploring Properties of the Prestin Protein},
booktitle = {Handbook of Research on Computational and Systems Biology - Interdisciplinary
Applications},
pages = {202--223},
publisher = {{IGI} Global},
year = {2011},
url = {https://doi.org/10.4018/978-1-60960-491-2.ch009},
doi = {10.4018/978-1-60960-491-2.CH009},
timestamp = {Tue, 01 Jun 2021 09:58:05 +0200},
biburl = {https://dblp.org/rec/books/daglib/p/DempseyCHA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DempseyCHA10,
author = {Kathryn Dempsey and
Benjamin Currall and
Richard Hallworth and
Hesham H. Ali},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An intelligent data-centric approach toward identification of conserved
motifs in protein sequences},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {398--401},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854839},
doi = {10.1145/1854776.1854839},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/DempseyCHA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QuestDSBA08,
author = {Daniel Quest and
Kathryn Dempsey and
Mohammad Shafiullah and
Dhundy Bastola and
Hesham H. Ali},
title = {{MTAP:} The Motif Tool Assessment Platform},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-9}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S9-S6},
doi = {10.1186/1471-2105-9-S9-S6},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/QuestDSBA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/QuestDSBA08,
author = {Daniel Quest and
Kathryn Dempsey and
Mohammad Shafiullah and
Dhundy Bastola and
Hesham H. Ali},
title = {A parallel architecture for regulatory motif algorithm assessment},
booktitle = {22nd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2008, Miami, Florida USA, April 14-18, 2008},
pages = {1--8},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IPDPS.2008.4536178},
doi = {10.1109/IPDPS.2008.4536178},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/QuestDSBA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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