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ORCIDBibTeX records: Qiwen Dong
@article{DBLP:journals/datamine/ZhouGNPDOQ22,
author = {Fang Zhou and
Suting Gao and
Lyu Ni and
Martin Pavlovski and
Qiwen Dong and
Zoran Obradovic and
Weining Qian},
title = {Dynamic self-paced sampling ensemble for highly imbalanced and class-overlapped
data classification},
journal = {Data Min. Knowl. Discov.},
volume = {36},
number = {5},
pages = {1601--1622},
year = {2022},
url = {https://doi.org/10.1007/s10618-022-00838-z},
doi = {10.1007/S10618-022-00838-Z},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datamine/ZhouGNPDOQ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fcsc/ZhouQZDZT22,
author = {Huan Zhou and
Weining Qian and
Xuan Zhou and
Qiwen Dong and
Aoying Zhou and
Wenrong Tan},
title = {Scalable and adaptive log manager in distributed systems},
journal = {Frontiers Comput. Sci.},
volume = {17},
number = {2},
pages = {172205},
year = {2022},
url = {https://doi.org/10.1007/s11704-022-1357-5},
doi = {10.1007/S11704-022-1357-5},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fcsc/ZhouQZDZT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dasfaa/LiPZDQO22,
author = {Xiaoyang Li and
Martin Pavlovski and
Fang Zhou and
Qiwen Dong and
Weining Qian and
Zoran Obradovic},
editor = {Arnab Bhattacharya and
Janice Lee and
Mong Li and
Divyakant Agrawal and
P. Krishna Reddy and
Mukesh K. Mohania and
Anirban Mondal and
Vikram Goyal and
Rage Uday Kiran},
title = {Supervised Multi-view Latent Space Learning by Jointly Preserving
Similarities Across Views and Samples},
booktitle = {Database Systems for Advanced Applications - 27th International Conference,
{DASFAA} 2022, Virtual Event, April 11-14, 2022, Proceedings, Part
{II}},
series = {Lecture Notes in Computer Science},
volume = {13246},
pages = {689--696},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-00126-0\_53},
doi = {10.1007/978-3-031-00126-0\_53},
timestamp = {Fri, 29 Apr 2022 14:50:38 +0200},
biburl = {https://dblp.org/rec/conf/dasfaa/LiPZDQO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/MaoDWH22,
author = {Kejie Mao and
Qiwen Dong and
Ye Wang and
Daocheng Hong},
editor = {Matteo Cristani and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {An Exploratory Approach to Intelligent Quiz Question Recommendation},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 26th International Conference KES-2022, Verona,
Italy and Virtual Event, 7-9 September 2022},
series = {Procedia Computer Science},
volume = {207},
pages = {4065--4074},
publisher = {Elsevier},
year = {2022},
url = {https://doi.org/10.1016/j.procs.2022.09.469},
doi = {10.1016/J.PROCS.2022.09.469},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kes/MaoDWH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csai/LiDL21,
author = {Yaqi Li and
Qiwen Dong and
Gang Liu},
title = {Regression Algorithm Based on Self-Distillation and Ensemble Learning},
booktitle = {{CSAI} 2021: 5th International Conference on Computer Science and
Artificial Intelligence, Beijing, China, December 4 - 6, 2021},
pages = {209--215},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3507548.3507580},
doi = {10.1145/3507548.3507580},
timestamp = {Thu, 28 Mar 2024 10:41:26 +0100},
biburl = {https://dblp.org/rec/conf/csai/LiDL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/ChenZFWHD21,
author = {Zixin Chen and
Huan Zhou and
Zeqiu Fan and
Ye Wang and
Daocheng Hong and
Qiwen Dong},
editor = {Jaroslaw Watr{\'{o}}bski and
Wojciech Salabun and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {Service-Oriented Data Processing for Dynamic Schema},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 25th International Conference KES-2021, Virtual
Event / Szczecin, Poland, 8-10 September 2021},
series = {Procedia Computer Science},
volume = {192},
pages = {3856--3864},
publisher = {Elsevier},
year = {2021},
url = {https://doi.org/10.1016/j.procs.2021.09.160},
doi = {10.1016/J.PROCS.2021.09.160},
timestamp = {Mon, 24 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kes/ChenZFWHD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/ShanZHDWS21,
author = {Lumin Shan and
Huan Zhou and
Daocheng Hong and
Qiwen Dong and
Ye Wang and
Shubing Song},
editor = {Jaroslaw Watr{\'{o}}bski and
Wojciech Salabun and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {Application of access control model for confidential data},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 25th International Conference KES-2021, Virtual
Event / Szczecin, Poland, 8-10 September 2021},
series = {Procedia Computer Science},
volume = {192},
pages = {3865--3874},
publisher = {Elsevier},
year = {2021},
url = {https://doi.org/10.1016/j.procs.2021.09.161},
doi = {10.1016/J.PROCS.2021.09.161},
timestamp = {Mon, 24 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kes/ShanZHDWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/FanZCHWD21,
author = {Zeqiu Fan and
Huan Zhou and
Zixin Chen and
Daocheng Hong and
Ye Wang and
Qiwen Dong},
editor = {Jaroslaw Watr{\'{o}}bski and
Wojciech Salabun and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {Design and Implementation of Scientific Research Big Data Service
Platform for Experimental Data Managing},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 25th International Conference KES-2021, Virtual
Event / Szczecin, Poland, 8-10 September 2021},
series = {Procedia Computer Science},
volume = {192},
pages = {3875--3884},
publisher = {Elsevier},
year = {2021},
url = {https://doi.org/10.1016/j.procs.2021.09.162},
doi = {10.1016/J.PROCS.2021.09.162},
timestamp = {Mon, 24 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kes/FanZCHWD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/ws/DongJZH20,
author = {Qiwen Dong and
Xiaoyang Jing and
Aoying Zhou and
Xiuzhen Hu},
title = {Biological Language Model - Theory and Application},
series = {East China Normal University Scientific Reports},
volume = {12},
publisher = {WorldScientific},
year = {2020},
url = {https://doi.org/10.1142/11629},
doi = {10.1142/11629},
isbn = {9789811212949},
timestamp = {Mon, 22 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/ws/DongJZH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JingDHL20,
author = {Xiaoyang Jing and
Qiwen Dong and
Daocheng Hong and
Ruqian Lu},
title = {Amino Acid Encoding Methods for Protein Sequences: {A} Comprehensive
Review and Assessment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {17},
number = {6},
pages = {1918--1931},
year = {2020},
url = {https://doi.org/10.1109/TCBB.2019.2911677},
doi = {10.1109/TCBB.2019.2911677},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JingDHL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/JinWYHDW20,
author = {Gangzeng Jin and
Daojiang Wang and
Dawei Yang and
Daocheng Hong and
Qiwen Dong and
Ye Wang},
editor = {Matteo Cristani and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {Role and Object Domain-Based Access Control Model for Graduate Education
Information System},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 24th International Conference KES-2020, Virtual
Event, 16-18 September 2020},
series = {Procedia Computer Science},
volume = {176},
pages = {1241--1250},
publisher = {Elsevier},
year = {2020},
url = {https://doi.org/10.1016/j.procs.2020.09.133},
doi = {10.1016/J.PROCS.2020.09.133},
timestamp = {Thu, 08 Jul 2021 16:04:01 +0200},
biburl = {https://dblp.org/rec/conf/kes/JinWYHDW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/YangWYDWZH20,
author = {Dawei Yang and
Daojiang Wang and
Dongming Yang and
Qiwen Dong and
Ye Wang and
Huan Zhou and
Daocheng Hong},
editor = {Matteo Cristani and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {DevOps in Practice for Education Management Information System at
{ECNU}},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 24th International Conference KES-2020, Virtual
Event, 16-18 September 2020},
series = {Procedia Computer Science},
volume = {176},
pages = {1382--1391},
publisher = {Elsevier},
year = {2020},
url = {https://doi.org/10.1016/j.procs.2020.09.148},
doi = {10.1016/J.PROCS.2020.09.148},
timestamp = {Wed, 27 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kes/YangWYDWZH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/WangYZWHDS20,
author = {Daojiang Wang and
Dongming Yang and
Huan Zhou and
Ye Wang and
Daocheng Hong and
Qiwen Dong and
Shubing Song},
editor = {Matteo Cristani and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {A Novel Application of Educational Management Information System based
on Micro Frontends},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 24th International Conference KES-2020, Virtual
Event, 16-18 September 2020},
series = {Procedia Computer Science},
volume = {176},
pages = {1567--1576},
publisher = {Elsevier},
year = {2020},
url = {https://doi.org/10.1016/j.procs.2020.09.168},
doi = {10.1016/J.PROCS.2020.09.168},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kes/WangYZWHDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/YangWZWSD20,
author = {Dongming Yang and
Daojiang Wang and
Huan Zhou and
Ye Wang and
Shubing Song and
Qiwen Dong},
editor = {Matteo Cristani and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {A novel application integration architecture for the education industry},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 24th International Conference KES-2020, Virtual
Event, 16-18 September 2020},
series = {Procedia Computer Science},
volume = {176},
pages = {1813--1822},
publisher = {Elsevier},
year = {2020},
url = {https://doi.org/10.1016/j.procs.2020.09.220},
doi = {10.1016/J.PROCS.2020.09.220},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kes/YangWZWSD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/MiaoLDH20,
author = {Dezhuang Miao and
Xuesong Lu and
Qiwen Dong and
Daocheng Hong},
editor = {Matteo Cristani and
Carlos Toro and
Cecilia Zanni{-}Merk and
Robert J. Howlett and
Lakhmi C. Jain},
title = {Humming-Query and Reinforcement-Learning based Modeling Approach for
Personalized Music Recommendation},
booktitle = {Knowledge-Based and Intelligent Information {\&} Engineering Systems:
Proceedings of the 24th International Conference KES-2020, Virtual
Event, 16-18 September 2020},
series = {Procedia Computer Science},
volume = {176},
pages = {2154--2163},
publisher = {Elsevier},
year = {2020},
url = {https://doi.org/10.1016/j.procs.2020.09.252},
doi = {10.1016/J.PROCS.2020.09.252},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kes/MiaoLDH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigir/HongLD20,
author = {Daocheng Hong and
Yang Li and
Qiwen Dong},
editor = {Jimmy X. Huang and
Yi Chang and
Xueqi Cheng and
Jaap Kamps and
Vanessa Murdock and
Ji{-}Rong Wen and
Yiqun Liu},
title = {Nonintrusive-Sensing and Reinforcement-Learning Based Adaptive Personalized
Music Recommendation},
booktitle = {Proceedings of the 43rd International {ACM} {SIGIR} conference on
research and development in Information Retrieval, {SIGIR} 2020, Virtual
Event, China, July 25-30, 2020},
pages = {1721--1724},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3397271.3401225},
doi = {10.1145/3397271.3401225},
timestamp = {Sun, 02 Oct 2022 16:15:14 +0200},
biburl = {https://dblp.org/rec/conf/sigir/HongLD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CuiDHW19,
author = {Yifeng Cui and
Qiwen Dong and
Daocheng Hong and
Xikun Wang},
title = {Predicting protein-ligand binding residues with deep convolutional
neural networks},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {93:1--93:12},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2672-1},
doi = {10.1186/S12859-019-2672-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CuiDHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icaai/HanHD18,
author = {Yi Han and
Jun He and
Qiwen Dong},
title = {CSSSketch2Code: An Automatic Method to Generate Web Pages with {CSS}
Style},
booktitle = {Proceedings of the 2nd International Conference on Advances in Artificial
Intelligence, {ICAAI} 2018, Barcelona, Spain, October 06-08, 2018},
pages = {29--35},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3292448.3292455},
doi = {10.1145/3292448.3292455},
timestamp = {Thu, 23 Jan 2020 16:55:00 +0100},
biburl = {https://dblp.org/rec/conf/icaai/HanHD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JingD17,
author = {Xiaoyang Jing and
Qiwen Dong},
title = {MQAPRank: improved global protein model quality assessment by learning-to-rank},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {275:1--275:8},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1691-z},
doi = {10.1186/S12859-017-1691-Z},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JingD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JingDL17,
author = {Xiaoyang Jing and
Qiwen Dong and
Ruqian Lu},
title = {RRCRank: a fusion method using rank strategy for residue-residue contact
prediction},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {390},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1811-9},
doi = {10.1186/S12859-017-1811-9},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JingDL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuDYZ16,
author = {Xiuzhen Hu and
Qiwen Dong and
Jianyi Yang and
Yang Zhang},
title = {Recognizing metal and acid radical ion-binding sites by integrating
\emph{ab initio} modeling with template-based transferals},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3260--3269},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw396},
doi = {10.1093/BIOINFORMATICS/BTW396},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuDYZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuWD16,
author = {Xiuzhen Hu and
Kai Wang and
Qiwen Dong},
title = {Protein ligand-specific binding residue predictions by an ensemble
classifier},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {470:1--470:12},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1348-3},
doi = {10.1186/S12859-016-1348-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuWD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DongWL16,
author = {Qiwen Dong and
Kai Wang and
Xuan Liu},
title = {Identifying the missing proteins in human proteome by biological language
model},
journal = {{BMC} Syst. Biol.},
volume = {10},
number = {4},
pages = {393--399},
year = {2016},
url = {https://doi.org/10.1186/s12918-016-0352-6},
doi = {10.1186/S12918-016-0352-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DongWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JingD16,
author = {Xiaoyang Jing and
Qiwen Dong},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {Improved protein residue-residue contacts prediction using learning-to-rank},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {116--121},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822503},
doi = {10.1109/BIBM.2016.7822503},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/JingD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JingDLL15,
author = {Xiaoyang Jing and
Qiwen Dong and
Xuan Liu and
Bin Liu},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {Protein model quality assessment by learning-to-rank},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {91--96},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359660},
doi = {10.1109/BIBM.2015.7359660},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/JingDLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/DongWWLL15,
author = {Qiwen Dong and
Shanyi Wang and
Kai Wang and
Xuan Liu and
Bin Liu},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {Identification of DNA-binding proteins by auto-cross covariance transformation},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {470--475},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359730},
doi = {10.1109/BIBM.2015.7359730},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/DongWWLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZXXWCDC14,
author = {Bin Liu and
Deyuan Zhang and
Ruifeng Xu and
Jinghao Xu and
Xiaolong Wang and
Qingcai Chen and
Qiwen Dong and
Kuo{-}Chen Chou},
title = {Combining evolutionary information extracted from frequency profiles
with sequence-based kernels for protein remote homology detection},
journal = {Bioinform.},
volume = {30},
number = {4},
pages = {472--479},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt709},
doi = {10.1093/BIOINFORMATICS/BTT709},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZXXWCDC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/GengGDZ12,
author = {Xin Geng and
Jihong Guan and
Qiwen Dong and
Shuigeng Zhou},
title = {An improved genetic algorithm for statistical potential function design
and protein structure prediction},
journal = {Int. J. Data Min. Bioinform.},
volume = {6},
number = {2},
pages = {162--177},
year = {2012},
url = {https://doi.org/10.1504/IJDMB.2012.048174},
doi = {10.1504/IJDMB.2012.048174},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijdmb/GengGDZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/LiuZD11,
author = {Xuan Liu and
Lijie Zhao and
Qiwen Dong},
title = {Protein remote homology detection based on auto-cross covariance transformation},
journal = {Comput. Biol. Medicine},
volume = {41},
number = {8},
pages = {640--647},
year = {2011},
url = {https://doi.org/10.1016/j.compbiomed.2011.05.015},
doi = {10.1016/J.COMPBIOMED.2011.05.015},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/LiuZD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijgs/DongCZ11,
author = {Qiwen Dong and
Yufei Chen and
Shuigeng Zhou},
title = {A machine learning-based method for protein global model quality assessment},
journal = {Int. J. Gen. Syst.},
volume = {40},
number = {4},
pages = {417--425},
year = {2011},
url = {https://doi.org/10.1080/03081079.2010.544869},
doi = {10.1080/03081079.2010.544869},
timestamp = {Mon, 12 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijgs/DongCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigkdd/ZhouJWDZL11,
author = {Shuigeng Zhou and
Caiyan Jia and
Fei Wang and
Qiwen Dong and
Shanfeng Zhu and
Ruqian Lu},
title = {A conversation with Professor Ruqian Lu et al},
journal = {{SIGKDD} Explor.},
volume = {13},
number = {2},
pages = {79--81},
year = {2011},
url = {https://doi.org/10.1145/2207243.2207259},
doi = {10.1145/2207243.2207259},
timestamp = {Tue, 29 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigkdd/ZhouJWDZL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DongZ11,
author = {Qiwen Dong and
Shuigeng Zhou},
title = {Novel Nonlinear Knowledge-Based Mean Force Potentials Based on Machine
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {8},
number = {2},
pages = {476--486},
year = {2011},
url = {https://doi.org/10.1109/TCBB.2010.86},
doi = {10.1109/TCBB.2010.86},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DongZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/DongZL10,
author = {Qiwen Dong and
Shuigeng Zhou and
Xuan Liu},
title = {Prediction of protein - protein interactions from primary sequences},
journal = {Int. J. Data Min. Bioinform.},
volume = {4},
number = {2},
pages = {211--227},
year = {2010},
url = {https://doi.org/10.1504/IJDMB.2010.032151},
doi = {10.1504/IJDMB.2010.032151},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijdmb/DongZL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongZG09,
author = {Qiwen Dong and
Shuigeng Zhou and
Jihong Guan},
title = {A new taxonomy-based protein fold recognition approach based on autocross-covariance
transformation},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2655--2662},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp500},
doi = {10.1093/BIOINFORMATICS/BTP500},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongZG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWLTDW09,
author = {Bin Liu and
Xiaolong Wang and
Lei Lin and
Buzhou Tang and
Qiwen Dong and
Xuan Wang},
title = {Prediction of protein binding sites in protein structures using hidden
Markov support vector machine},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {381},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-381},
doi = {10.1186/1471-2105-10-381},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWLTDW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DengGDZ09,
author = {Lei Deng and
Jihong Guan and
Qiwen Dong and
Shuigeng Zhou},
title = {Prediction of protein-protein interaction sites using an ensemble
method},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {426},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-426},
doi = {10.1186/1471-2105-10-426},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DengGDZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/LiuWLDW09,
author = {Bin Liu and
Xiaolong Wang and
Lei Lin and
Qiwen Dong and
Xuan Wang},
title = {Exploiting three kinds of interface propensities to identify protein
binding sites},
journal = {Comput. Biol. Chem.},
volume = {33},
number = {4},
pages = {303--311},
year = {2009},
url = {https://doi.org/10.1016/j.compbiolchem.2009.07.001},
doi = {10.1016/J.COMPBIOLCHEM.2009.07.001},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/LiuWLDW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/DongGZG09,
author = {Qiwen Dong and
Xin Geng and
Shuigeng Zhou and
Jihong Guan},
editor = {Jeffrey J. P. Tsai and
Phillip C.{-}Y. Sheu and
Han C. W. Hsiao},
title = {Empirical Probability Functions Derived from Dihedral Angles for Protein
Structure Prediction},
booktitle = {Ninth {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2009, June 22-24, 2009, Taichung, Taiwan},
pages = {146--152},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/BIBE.2009.55},
doi = {10.1109/BIBE.2009.55},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/DongGZG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcbs/DongZG09,
author = {Qiwen Dong and
Shuigeng Zhou and
Jihong Guan},
editor = {Joe Zhang and
Guo{-}Zheng Li and
Jack Y. Yang},
title = {Improving Prediction of the Contact Numbers of Residues in Proteins
from Primary Sequences},
booktitle = {International Joint Conferences on Bioinformatics, Systems Biology
and Intelligent Computing, {IJCBS} 2009, Shanghai, China, 3-5 August
2009},
pages = {251--254},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/IJCBS.2009.39},
doi = {10.1109/IJCBS.2009.39},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcbs/DongZG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWLDW08,
author = {Bin Liu and
Xiaolong Wang and
Lei Lin and
Qiwen Dong and
Xuan Wang},
title = {A discriminative method for protein remote homology detection and
fold recognition combining Top-\emph{n}-grams and latent semantic
analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-510},
doi = {10.1186/1471-2105-9-510},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWLDW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LiuLWDW08,
author = {Bin Liu and
Lei Lin and
Xiaolong Wang and
Qiwen Dong and
Xuan Wang},
editor = {Mourad Elloumi and
Josef K{\"{u}}ng and
Michal Linial and
Robert F. Murphy and
Kristan Schneider and
Cristian Toma},
title = {A Discriminative Method for Protein Remote Homology Detection Based
on N-nary Profiles},
booktitle = {Bioinformatics Research and Development, Second International Conference,
{BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
series = {Communications in Computer and Information Science},
volume = {13},
pages = {74--86},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-70600-7\_6},
doi = {10.1007/978-3-540-70600-7\_6},
timestamp = {Tue, 10 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bird/LiuLWDW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DongWLG07,
author = {Qiwen Dong and
Xiaolong Wang and
Lei Lin and
Yi Guan},
title = {Exploiting residue-level and profile-level interface propensities
for usage in binding sites prediction of proteins},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-147},
doi = {10.1186/1471-2105-8-147},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DongWLG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/DongWL07,
author = {Qiwen Dong and
Xiaolong Wang and
Lei Lin},
title = {Methods for optimizing the structure alphabet sequences of proteins},
journal = {Comput. Biol. Medicine},
volume = {37},
number = {11},
pages = {1610--1616},
year = {2007},
url = {https://doi.org/10.1016/j.compbiomed.2007.03.002},
doi = {10.1016/J.COMPBIOMED.2007.03.002},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/DongWL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/DongLW07,
author = {Qiwen Dong and
Lei Lin and
Xiaolong Wang},
editor = {Sepp Hochreiter and
Roland Wagner},
title = {Protein Remote Homology Detection Based on Binary Profiles},
booktitle = {Bioinformatics Research and Development, First International Conference,
{BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4414},
pages = {212--223},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71233-6\_17},
doi = {10.1007/978-3-540-71233-6\_17},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/bird/DongLW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongWL06,
author = {Qiwen Dong and
Xiaolong Wang and
Lei Lin},
title = {Application of latent semantic analysis to protein remote homology
detection},
journal = {Bioinform.},
volume = {22},
number = {3},
pages = {285--290},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti801},
doi = {10.1093/BIOINFORMATICS/BTI801},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongWL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DongWL06,
author = {Qiwen Dong and
Xiaolong Wang and
Lei Lin},
title = {Novel knowledge-based mean force potential at the profile level},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {324},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-324},
doi = {10.1186/1471-2105-7-324},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DongWL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/DongWLX06,
author = {Qiwen Dong and
Xiaolong Wang and
Lei Lin and
Zhiming Xu},
title = {Domain boundary prediction based on profile domain linker propensity
index},
journal = {Comput. Biol. Chem.},
volume = {30},
number = {2},
pages = {127--133},
year = {2006},
url = {https://doi.org/10.1016/j.compbiolchem.2006.01.001},
doi = {10.1016/J.COMPBIOLCHEM.2006.01.001},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/DongWLX06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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