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ORCIDBibTeX records: Martin Eisenacher
@article{DBLP:journals/nar/Perez-RiverolBB22,
author = {Yasset P{\'{e}}rez{-}Riverol and
Jingwen Bai and
Chakradhar Bandla and
David Garc{\'{\i}}a{-}Seisdedos and
Suresh Hewapathirana and
Selvakumar Kamatchinathan and
Deepti Jaiswal Kundu and
Ananth Prakash and
Anika Frericks{-}Zipper and
Martin Eisenacher and
Mathias Walzer and
Shengbo Wang and
Alvis Brazma and
Juan Antonio Vizca{\'{\i}}no},
title = {The {PRIDE} database resources in 2022: a hub for mass spectrometry-based
proteomics evidences},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {543--552},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1038},
doi = {10.1093/NAR/GKAB1038},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Perez-RiverolBB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MayerMSUWWRQFGL21,
author = {Gerhard Mayer and
Wolfgang M{\"{u}}ller and
Karin Schork and
Julian Uszkoreit and
Andreas Weidemann and
Ulrike Wittig and
Maja Rey and
Christian Quast and
Janine Felden and
Frank Oliver Gl{\"{o}}ckner and
Matthias Lange and
Daniel Arend and
Sebastian Beier and
Astrid Junker and
Uwe Scholz and
Danuta Sch{\"{u}}ler and
Hans A. Kestler and
Daniel Wibberg and
Alfred P{\"{u}}hler and
Sven Twardziok and
J{\"{u}}rgen Eils and
Roland Eils and
Steve Hoffmann and
Martin Eisenacher and
Michael Turewicz},
title = {Implementing {FAIR} data management within the German Network for
Bioinformatics Infrastructure (de.NBI) exemplified by selected use
cases},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab010},
doi = {10.1093/BIB/BBAB010},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/MayerMSUWWRQFGL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MayerQFLPPLSGMM19,
author = {Gerhard Mayer and
Christian Quast and
Janine Felden and
Matthias Lange and
Manuel Prinz and
Alfred P{\"{u}}hler and
Chris Lawerenz and
Uwe Scholz and
Frank Oliver Gl{\"{o}}ckner and
Wolfgang M{\"{u}}ller and
Katrin Marcus and
Martin Eisenacher},
title = {A generally applicable lightweight method for calculating a value
structure for tools and services in bioinformatics infrastructure
projects},
journal = {Briefings Bioinform.},
volume = {20},
number = {4},
pages = {1215--1221},
year = {2019},
url = {https://doi.org/10.1093/bib/bbx140},
doi = {10.1093/BIB/BBX140},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/MayerQFLPPLSGMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Perez-RiverolCB19,
author = {Yasset P{\'{e}}rez{-}Riverol and
Attila Csordas and
Jingwen Bai and
Manuel Bernal Llinares and
Suresh Hewapathirana and
Deepti Jaiswal Kundu and
Avinash Inuganti and
Johannes Griss and
Gerhard Mayer and
Martin Eisenacher and
Enrique P{\'{e}}rez and
Julian Uszkoreit and
Julianus Pfeuffer and
Timo Sachsenberg and
Sule Yilmaz and
Shivani Tiwary and
J{\"{u}}rgen Cox and
Enrique Audain and
Mathias Walzer and
Andrew F. Jarnuczak and
Tobias Ternent and
Alvis Brazma and
Juan Antonio Vizca{\'{\i}}no},
title = {The {PRIDE} database and related tools and resources in 2019: improving
support for quantification data},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D442--D450},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1106},
doi = {10.1093/NAR/GKY1106},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Perez-RiverolCB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TurewiczAMME16,
author = {Michael Turewicz and
Maike Ahrens and
Caroline May and
Katrin Marcus and
Martin Eisenacher},
title = {{PAA:} an R/bioconductor package for biomarker discovery with protein
microarrays},
journal = {Bioinform.},
volume = {32},
number = {10},
pages = {1577--1579},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw037},
doi = {10.1093/BIOINFORMATICS/BTW037},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TurewiczAMME16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DeutschABEJMOOV15,
author = {Eric W. Deutsch and
Juan P. Albar and
Pierre{-}Alain Binz and
Martin Eisenacher and
Andrew R. Jones and
Gerhard Mayer and
Gilbert S. Omenn and
Sandra E. Orchard and
Juan Antonio Vizca{\'{\i}}no and
Henning Hermjakob},
title = {Development of data representation standards by the human proteome
organization proteomics standards initiative},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {3},
pages = {495--506},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv001},
doi = {10.1093/JAMIA/OCV001},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/DeutschABEJMOOV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/EisenacherRMR15,
author = {Martin Eisenacher and
J{\"{o}}rg Rahnenf{\"{u}}hrer and
Axel Mosig and
Sven Rahmann},
title = {Poster abstracts of {GCB} 2015},
journal = {PeerJ Prepr.},
volume = {3},
pages = {e1350},
year = {2015},
url = {https://doi.org/10.7287/peerj.preprints.1350v2},
doi = {10.7287/PEERJ.PREPRINTS.1350V2},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/EisenacherRMR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/MosigRER15,
author = {Axel Mosig and
J{\"{o}}rg Rahnenf{\"{u}}hrer and
Martin Eisenacher and
Sven Rahmann},
title = {Invited presentations, junior research groups and research highlights
at {GCB} 2015},
journal = {PeerJ Prepr.},
volume = {3},
pages = {e1352},
year = {2015},
url = {https://doi.org/10.7287/peerj.preprints.1352v1},
doi = {10.7287/PEERJ.PREPRINTS.1352V1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/MosigRER15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MayerMOJBDCKLSOVHSME13,
author = {Gerhard Mayer and
Luisa Montecchi{-}Palazzi and
David Ovelleiro and
Andrew R. Jones and
Pierre{-}Alain Binz and
Eric W. Deutsch and
Matthew Chambers and
Marius Kallhardt and
Fredrik Levander and
James Shofstahl and
Sandra E. Orchard and
Juan Antonio Vizca{\'{\i}}no and
Henning Hermjakob and
Christian Stephan and
Helmut E. Meyer and
Martin Eisenacher},
title = {The {HUPO} proteomics standards initiative- mass spectrometry controlled
vocabulary},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat009},
doi = {10.1093/DATABASE/BAT009},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/MayerMOJBDCKLSOVHSME13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/SchoberMMEN13,
author = {Daniel Schober and
Gerhard Mayer and
Annick Moing and
Martin Eisenacher and
Steffen Neumann},
editor = {Matthias Horbach},
title = {Ontological analysis of controlled vocabularies used in {PSI/MSI}
supported {XML} standards},
booktitle = {43. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Informatik
angepasst an Mensch, Organisation und Umwelt, {INFORMATIK} 2013, Koblenz,
Germany, September 16-20, 2013},
series = {{LNI}},
volume = {{P-220}},
pages = {1875--1888},
publisher = {{GI}},
year = {2013},
url = {https://dl.gi.de/handle/20.500.12116/20619},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/SchoberMMEN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/others/12/PodwojskiSE12,
author = {Katharina Podwojski and
Christian Stephan and
Martin Eisenacher},
editor = {Katrin Marcus},
title = {Important Issues in Planning a Proteomics Experiment: Statistical
Considerations of Quantitative Proteomic Data},
booktitle = {Quantitative Methods in Proteomics},
series = {Methods in Molecular Biology},
volume = {893},
pages = {3--21},
publisher = {Humana Press},
year = {2012},
url = {https://doi.org/10.1007/978-1-61779-885-6\_1},
doi = {10.1007/978-1-61779-885-6\_1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/others/12/PodwojskiSE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/others/12/EisenacherKTKUS12,
author = {Martin Eisenacher and
Michael Kohl and
Michael Turewicz and
Markus{-}Hermann Koch and
Julian Uszkoreit and
Christian Stephan},
editor = {Katrin Marcus},
title = {Search and Decoy: The Automatic Identification of Mass Spectra},
booktitle = {Quantitative Methods in Proteomics},
series = {Methods in Molecular Biology},
volume = {893},
pages = {445--488},
publisher = {Humana Press},
year = {2012},
url = {https://doi.org/10.1007/978-1-61779-885-6\_28},
doi = {10.1007/978-1-61779-885-6\_28},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/others/12/EisenacherKTKUS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/StephanEKM10,
author = {Christian Stephan and
Martin Eisenacher and
Michael Kohl and
Helmut E. Meyer},
editor = {Simon J. Hubbard and
Andrew R. Jones},
title = {Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics
Data Sets in Public Repositories Using Standard Formats},
booktitle = {Proteome Bioinformatics},
pages = {345--368},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-1-60761-444-9\_24},
doi = {10.1007/978-1-60761-444-9\_24},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/p/StephanEKM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EisenacherBK06,
author = {Martin Eisenacher and
J{\"{u}}rgen de Braaf and
Simone K{\"{o}}nig},
title = {Mass Analysis Peptide Sequence Prediction {(MAPSP)}},
journal = {Bioinform.},
volume = {22},
number = {8},
pages = {1002--1003},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl052},
doi = {10.1093/BIOINFORMATICS/BTL052},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EisenacherBK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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