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ORCIDBibTeX records: Toni Gabaldón
@article{DBLP:journals/f1000research/WaterhouseABBHHJKLPPPRBG23,
author = {Robert M. Waterhouse and
Anne{-}Fran{\c{c}}oise Adam{-}Blondon and
Bachir Balech and
Endre Barta and
Katharina F. Heil and
Graham M. Hughes and
Lars S. Jermiin and
Mat{\'{u}}s Kalas and
Jerry Lanfear and
Evangelos Pafilis and
Aristotelis C. Papageorgiou and
Fotis E. Psomopoulos and
Niels Raes and
Josephine Burgin and
Toni Gabald{\'{o}}n},
title = {The {ELIXIR} Biodiversity Community: Understanding short- and long-term
changes in biodiversity},
journal = {F1000Research},
volume = {12},
pages = {499},
year = {2023},
url = {https://doi.org/10.12688/f1000research.133724.1},
doi = {10.12688/F1000RESEARCH.133724.1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/f1000research/WaterhouseABBHHJKLPPPRBG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BugnonEPGRFRCGA22,
author = {Leandro A Bugnon and
Alejandro A. Edera and
Santiago Prochetto and
Matias Gerard and
Jonathan Raad and
Emilio Fenoy and
Mariano Rubiolo and
Uciel Chorostecki and
Toni Gabald{\'{o}}n and
Federico Ariel and
Leandro E. Di Persia and
Diego H. Milone and
Georgina Stegmayer},
title = {Secondary structure prediction of long noncoding {RNA:} review and
experimental comparison of existing approaches},
journal = {Briefings Bioinform.},
volume = {23},
number = {4},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac205},
doi = {10.1093/BIB/BBAC205},
timestamp = {Fri, 16 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BugnonEPGRFRCGA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FuentesMCCMG22,
author = {Diego Fuentes and
Manuel Molina and
Uciel Chorostecki and
Salvador Capella{-}Guti{\'{e}}rrez and
Marina Marcet{-}Houben and
Toni Gabald{\'{o}}n},
title = {PhylomeDB {V5:} an expanding repository for genome-wide catalogues
of annotated gene phylogenies},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1062--1068},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab966},
doi = {10.1093/NAR/GKAB966},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FuentesMCCMG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NeversJJYFPCCMV22,
author = {Yannis Nevers and
Tamsin E. M. Jones and
Dushyanth Jyothi and
Bethan Yates and
Meritxell Ferret and
Laura Portell{-}Silva and
Laia Cod{\'{o}} and
Salvatore Cosentino and
Marina Marcet{-}Houben and
Anna Vlasova and
Laetitia Poidevin and
Arnaud Kress and
Mark Hickman and
Emma Persson and
Ivana Pilizota and
Cristina Guijarro{-}Clarke and
Adrian M. Altenhoff and
Elspeth A. Bruford and
Christophe Dessimoz and
Ingo Ebersberger and
David M. Emms and
Toni Gabald{\'{o}}n and
Natasha M. Glover and
Yanhui Hu and
Wataru Iwasaki and
Odile Lecompte and
Benjamin Linard and
Mar{\'{\i}}a J. Mart{\'{\i}}n and
David S. Roos and
Erik Sonhammer and
Paul D. Thomas and
David Thybert and
Klaas Vandepoele and
Salvador Capella{-}Guti{\'{e}}rrez and
Asier Gonzalez{-}Uriarte and
Javier Garrayo{-}Ventas and
Dmitry Repchevsky and
Vicky Sundesha and
Erik L. L. Sonnhammer},
title = {The Quest for Orthologs orthology benchmark service in 2022},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{W1}},
pages = {623--632},
year = {2022},
url = {https://doi.org/10.1093/nar/gkac330},
doi = {10.1093/NAR/GKAC330},
timestamp = {Sun, 19 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NeversJJYFPCCMV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafezFADMRSPBGL21,
author = {Ahmed Ibrahem Hafez and
Ricardo Futami and
Amir Arastehfar and
Farnaz Daneshnia and
Ana Miguel and
Francisco J. Roig and
Beatriz Soriano and
Jaume P{\'{e}}rez{-}S{\'{a}}nchez and
Teun Boekhout and
Toni Gabald{\'{o}}n and
Carlos Llor{\'{e}}ns},
title = {SeqEditor: an application for primer design and sequence analysis
with or without {GTF/GFF} files},
journal = {Bioinform.},
volume = {37},
number = {11},
pages = {1610--1612},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa903},
doi = {10.1093/BIOINFORMATICS/BTAA903},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HafezFADMRSPBGL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HovhannisyanHLG20,
author = {Hrant Hovhannisyan and
Ahmed Ibrahem Hafez and
Carlos Llor{\'{e}}ns and
Toni Gabald{\'{o}}n},
title = {{CROSSMAPPER:} estimating cross-mapping rates and optimizing experimental
design in multi-species sequencing studies},
journal = {Bioinform.},
volume = {36},
number = {3},
pages = {925--927},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz626},
doi = {10.1093/BIOINFORMATICS/BTZ626},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HovhannisyanHLG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Marcet-HoubenG20,
author = {Marina Marcet{-}Houben and
Toni Gabald{\'{o}}n},
title = {EvolClust: automated inference of evolutionary conserved gene clusters
in eukaryotes},
journal = {Bioinform.},
volume = {36},
number = {4},
pages = {1265--1266},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz706},
doi = {10.1093/BIOINFORMATICS/BTZ706},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Marcet-HoubenG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PeguerolesMCMG20,
author = {Cinta Pegueroles and
Ver{\'{o}}nica Mix{\~{a}}o and
Laia Carret{\'{e}} and
Manuel Molina and
Toni Gabald{\'{o}}n},
title = {HaploTypo: a variant-calling pipeline for phased genomes},
journal = {Bioinform.},
volume = {36},
number = {8},
pages = {2569--2571},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz933},
doi = {10.1093/BIOINFORMATICS/BTZ933},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PeguerolesMCMG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChorosteckiMPG20,
author = {Uciel Chorostecki and
Manuel Molina and
Leszek P. Pryszcz and
Toni Gabald{\'{o}}n},
title = {MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology
and paralogy across the tree of life},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Webserver-Issue},
pages = {W553--W557},
year = {2020},
url = {https://doi.org/10.1093/nar/gkaa282},
doi = {10.1093/NAR/GKAA282},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChorosteckiMPG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ForslundPCSAHMP18,
author = {Kristoffer Forslund and
C{\'{e}}cile Pereira and
Salvador Capella{-}Guti{\'{e}}rrez and
Alan W. Sousa da Silva and
Adrian M. Altenhoff and
Jaime Huerta{-}Cepas and
Matthieu Muffato and
Mateus Patricio and
Klaas Vandepoele and
Ingo Ebersberger and
Judith A. Blake and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
The Quest for Orthologs Consortium and
Brigitte Boeckmann and
Toni Gabald{\'{o}}n and
Erik L. L. Sonnhammer and
Christophe Dessimoz and
Suzanna Lewis},
title = {Gearing up to handle the mosaic nature of life in the quest for orthologs},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {323--329},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx542},
doi = {10.1093/BIOINFORMATICS/BTX542},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ForslundPCSAHMP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Baa-PuyouletPFH16,
author = {Patrice Baa{-}Puyoulet and
Nicolas Parisot and
G{\'{e}}rard Febvay and
Jaime Huerta{-}Cepas and
Augusto F. Vellozo and
Toni Gabald{\'{o}}n and
Federica Calevro and
Hubert Charles and
Stefano Colella},
title = {ArthropodaCyc: a CycADS powered collection of BioCyc databases to
analyse and compare metabolism of arthropods},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw081},
doi = {10.1093/DATABASE/BAW081},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/Baa-PuyouletPFH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Furio-TariTGEC16,
author = {Pedro Furi{\'{o}}{-}Tar{\'{\i}} and
Sonia Tarazona and
Toni Gabald{\'{o}}n and
Anton J. Enright and
Ana Conesa},
title = {spongeScan: {A} web for detecting microRNA binding elements in lncRNA
sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W176--W180},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw443},
doi = {10.1093/NAR/GKW443},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Furio-TariTGEC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SonnhammerGSMRBTDa14,
author = {Erik L. L. Sonnhammer and
Toni Gabald{\'{o}}n and
Alan W. Sousa da Silva and
Maria Jesus Martin and
Marc Robinson{-}Rechavi and
Brigitte Boeckmann and
Paul D. Thomas and
Christophe Dessimoz and
The Quest for Orthologs Consortium},
title = {Big data and other challenges in the quest for orthologs},
journal = {Bioinform.},
volume = {30},
number = {21},
pages = {2993--2998},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu492},
doi = {10.1093/BIOINFORMATICS/BTU492},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SonnhammerGSMRBTDa14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PowellFST0HGRCKJMB14,
author = {Sean Powell and
Kristoffer Forslund and
Damian Szklarczyk and
Kalliopi Trachana and
Alexander Roth and
Jaime Huerta{-}Cepas and
Toni Gabald{\'{o}}n and
Thomas Rattei and
Christopher J. Creevey and
Michael Kuhn and
Lars Juhl Jensen and
Christian von Mering and
Peer Bork},
title = {eggNOG v4.0: nested orthology inference across 3686 organisms},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {231--239},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1253},
doi = {10.1093/NAR/GKT1253},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/PowellFST0HGRCKJMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Huerta-CepasCPMG14,
author = {Jaime Huerta{-}Cepas and
Salvador Capella{-}Guti{\'{e}}rrez and
Leszek P. Pryszcz and
Marina Marcet{-}Houben and
Toni Gabald{\'{o}}n},
title = {PhylomeDB v4: zooming into the plurality of evolutionary histories
of a genome},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {897--902},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1177},
doi = {10.1093/NAR/GKT1177},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Huerta-CepasCPMG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/DohmMHCZTRSSRGK14,
author = {Juliane C. Dohm and
Andr{\'{e}} E. Minoche and
Daniela Holtgr{\"{a}}we and
Salvador Capella{-}Guti{\'{e}}rrez and
Falk Zakrzewski and
Hakim Tafer and
Oliver Rupp and
Thomas Rosleff S{\"{o}}rensen and
Ralf Stracke and
Richard Reinhardt and
Alexander Goesmann and
Thomas Kraft and
Britta Schulz and
Peter F. Stadler and
Thomas Schmidt and
Toni Gabald{\'{o}}n and
Hans Lehrach and
Bernd Weisshaar and
Heinz Himmelbauer},
title = {The genome of the recently domesticated crop plant sugar beet (\emph{Beta
vulgaris}) Open},
journal = {Nat.},
volume = {505},
number = {7484},
pages = {546--549},
year = {2014},
url = {https://doi.org/10.1038/nature12817},
doi = {10.1038/NATURE12817},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/DohmMHCZTRSSRGK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Capella-GutierrezG13,
author = {Salvador Capella{-}Guti{\'{e}}rrez and
Toni Gabald{\'{o}}n},
title = {Measuring guide-tree dependency of inferred gaps in progressive aligners},
journal = {Bioinform.},
volume = {29},
number = {8},
pages = {1011--1017},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt095},
doi = {10.1093/BIOINFORMATICS/BTT095},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Capella-GutierrezG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DessimozGRSH12,
author = {Christophe Dessimoz and
Toni Gabald{\'{o}}n and
David S. Roos and
Erik L. L. Sonnhammer and
Javier Herrero},
title = {Toward community standards in the quest for orthologs},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {900--904},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts050},
doi = {10.1093/BIOINFORMATICS/BTS050},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DessimozGRSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Huerta-CepasDHG11,
author = {Jaime Huerta{-}Cepas and
Joaqu{\'{\i}}n Dopazo and
Martijn A. Huynen and
Toni Gabald{\'{o}}n},
title = {Evidence for short-time divergence and long-time conservation of tissue-specific
expression after gene duplication},
journal = {Briefings Bioinform.},
volume = {12},
number = {5},
pages = {442--448},
year = {2011},
url = {https://doi.org/10.1093/bib/bbr022},
doi = {10.1093/BIB/BBR022},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/Huerta-CepasDHG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/VellozoVBHCFCRDGSCC11,
author = {Augusto F. Vellozo and
Am{\'{e}}lie S. V{\'{e}}ron and
Patrice Baa{-}Puyoulet and
Jaime Huerta{-}Cepas and
Ludovic Cottret and
G{\'{e}}rard Febvay and
Federica Calevro and
Yvan Rahb{\'{e}} and
Angela E. Douglas and
Toni Gabald{\'{o}}n and
Marie{-}France Sagot and
Hubert Charles and
Stefano Colella},
title = {CycADS: an annotation database system to ease the development and
update of BioCyc databases},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar008},
doi = {10.1093/DATABASE/BAR008},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/VellozoVBHCFCRDGSCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Huerta-CepasG11,
author = {Jaime Huerta{-}Cepas and
Toni Gabald{\'{o}}n},
title = {Assigning duplication events to relative temporal scales in genome-wide
studies},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {38--45},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq609},
doi = {10.1093/BIOINFORMATICS/BTQ609},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Huerta-CepasG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Huerta-CepasCPDKMG11,
author = {Jaime Huerta{-}Cepas and
Salvador Capella{-}Guti{\'{e}}rrez and
Leszek P. Pryszcz and
Ivan Denisov and
Diego Kormes and
Marina Marcet{-}Houben and
Toni Gabald{\'{o}}n},
title = {PhylomeDB v3.0: an expanding repository of genome-wide collections
of trees, alignments and phylogeny-based orthology and paralogy predictions},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {556--560},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1109},
doi = {10.1093/NAR/GKQ1109},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Huerta-CepasCPDKMG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SanchezSTMCPMCHGDD11,
author = {Rub{\'{e}}n S{\'{a}}nchez and
Fran{\c{c}}ois Serra and
Joaqu{\'{\i}}n T{\'{a}}rraga and
Ignacio Medina and
Jos{\'{e}} Carbonell and
Luis Pulido and
Alejandro de Mar{\'{\i}}a and
Salvador Capella{-}Guti{\'{e}}rrez and
Jaime Huerta{-}Cepas and
Toni Gabald{\'{o}}n and
Joaqu{\'{\i}}n Dopazo and
Hern{\'{a}}n Dopazo},
title = {Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics,
phylogenomics and hypotheses testing},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Web-Server-Issue},
pages = {470--474},
year = {2011},
url = {https://doi.org/10.1093/nar/gkr408},
doi = {10.1093/NAR/GKR408},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SanchezSTMCPMCHGDD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Huerta-CepasDG10,
author = {Jaime Huerta{-}Cepas and
Joaqu{\'{\i}}n Dopazo and
Toni Gabald{\'{o}}n},
title = {{ETE:} a python Environment for Tree Exploration},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {24},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-24},
doi = {10.1186/1471-2105-11-24},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Huerta-CepasDG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LingnerMGNM10,
author = {Thomas Lingner and
Stefanie M{\"{u}}hlhausen and
Toni Gabald{\'{o}}n and
C{\'{e}}dric Notredame and
Peter Meinicke},
title = {Predicting phenotypic traits of prokaryotes from protein domain frequencies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {481},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-481},
doi = {10.1186/1471-2105-11-481},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LingnerMGNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchluterRGSP10,
author = {Agatha Schl{\"{u}}ter and
Alejandro Real{-}Chicharro and
Toni Gabald{\'{o}}n and
Francisca S{\'{a}}nchez{-}Jim{\'{e}}nez and
Aurora Pujol},
title = {PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {800--805},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp935},
doi = {10.1093/NAR/GKP935},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchluterRGSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Capella-GutierrezSG09,
author = {Salvador Capella{-}Guti{\'{e}}rrez and
Jos{\'{e}} M. Silla{-}Mart{\'{\i}}nez and
Toni Gabald{\'{o}}n},
title = {trimAl: a tool for automated alignment trimming in large-scale phylogenetic
analyses},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1972--1973},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp348},
doi = {10.1093/BIOINFORMATICS/BTP348},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Capella-GutierrezSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/PatricioHGZP09,
author = {Mateus Patricio and
Jaime Huerta{-}Cepas and
Toni Gabald{\'{o}}n and
Rafael Zardoya and
David Posada},
editor = {Sigeru Omatu and
Miguel Rocha and
Jos{\'{e}} Bravo and
Florentino Fern{\'{a}}ndez Riverola and
Emilio Corchado and
Andr{\'{e}}s Bustillo and
Juan M. Corchado},
title = {Automatic Prediction of the Genetic Code},
booktitle = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 10th International Work-Conference
on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
Spain, June 10-12, 2009. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5518},
pages = {1125--1129},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02481-8\_170},
doi = {10.1007/978-3-642-02481-8\_170},
timestamp = {Tue, 15 Nov 2022 15:22:37 +0100},
biburl = {https://dblp.org/rec/conf/iwann/PatricioHGZP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Huerta-CepasBDG08,
author = {Jaime Huerta{-}Cepas and
Anibal Bueno and
Joaqu{\'{\i}}n Dopazo and
Toni Gabald{\'{o}}n},
title = {PhylomeDB: a database for genome-wide collections of gene phylogenies},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {491--496},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm899},
doi = {10.1093/NAR/GKM899},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Huerta-CepasBDG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchluterFDGHBRWPP07,
author = {Agatha Schl{\"{u}}ter and
St{\'{e}}phane Fourcade and
Enric Dom{\`{e}}nech{-}Est{\'{e}}vez and
Toni Gabald{\'{o}}n and
Jaime Huerta{-}Cepas and
Guillaume Berthommier and
Raymond Ripp and
Ronald J. A. Wanders and
Olivier Poch and
Aurora Pujol},
title = {PeroxisomeDB: a database for the peroxisomal proteome, functional
genomics and disease},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {815--822},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl935},
doi = {10.1093/NAR/GKL935},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SchluterFDGHBRWPP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TarragaMAHGDD07,
author = {Joaqu{\'{\i}}n T{\'{a}}rraga and
Ignacio Medina and
Leonardo Arbiza and
Jaime Huerta{-}Cepas and
Toni Gabald{\'{o}}n and
Joaqu{\'{\i}}n Dopazo and
Hern{\'{a}}n Dopazo},
title = {Phylemon: a suite of web tools for molecular evolution, phylogenetics
and phylogenomics},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Web-Server-Issue},
pages = {38--42},
year = {2007},
url = {https://doi.org/10.1093/nar/gkm224},
doi = {10.1093/NAR/GKM224},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/TarragaMAHGDD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GabaldonH07,
author = {Toni Gabald{\'{o}}n and
Martijn A. Huynen},
title = {From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial
Protein Synthesis and Metabolism},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {11},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030219},
doi = {10.1371/JOURNAL.PCBI.0030219},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GabaldonH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/GabaldonH05,
author = {Toni Gabald{\'{o}}n and
Martijn A. Huynen},
title = {Lineage-specific gene loss following mitochondrial endosymbiosis and
its potential for function prediction in eukaryotes},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {150},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1124},
doi = {10.1093/BIOINFORMATICS/BTI1124},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/GabaldonH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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