BibTeX records: Can Kesmir

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@article{DBLP:journals/nar/BagaevVSSRDGAEZ20,
  author       = {Dmitry V. Bagaev and
                  Renske M. A. Vroomans and
                  Jerome Samir and
                  Ulrik Stervbo and
                  Cristina Rius and
                  Garry Dolton and
                  Alexander Greenshields{-}Watson and
                  Meriem Attaf and
                  Evgeny S. Egorov and
                  Ivan V. Zvyagin and
                  Nina Babel and
                  David K. Cole and
                  Andrew J. Godkin and
                  Andrew K. Sewell and
                  Can Kesmir and
                  Dmitry M. Chudakov and
                  Fabio Luciani and
                  Mikhail Shugay},
  title        = {VDJdb in 2019: database extension, new analysis infrastructure and
                  a T-cell receptor motif compendium},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D1057--D1062},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz874},
  doi          = {10.1093/NAR/GKZ874},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BagaevVSSRDGAEZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/ShugayBZVCDKSKE18,
  author       = {Mikhail Shugay and
                  Dmitriy V. Bagaev and
                  Ivan V. Zvyagin and
                  Renske M. A. Vroomans and
                  Jeremy Chase Crawford and
                  Garry Dolton and
                  Ekaterina Komech and
                  Anastasiya L. Sycheva and
                  Anna E. Koneva and
                  Evgeniy S. Egorov and
                  Alexey V. Eliseev and
                  Ewald van Dyk and
                  Pradyot Dash and
                  Meriem Attaf and
                  Cristina Rius and
                  Kristin Ladell and
                  James E. McLaren and
                  Katherine K. Matthews and
                  E. Bridie Clemens and
                  Daniel C. Douek and
                  Fabio Luciani and
                  Debbie van Baarle and
                  Katherine Kedzierska and
                  Can Kesmir and
                  Paul G. Thomas and
                  David A. Price and
                  Andrew K. Sewell and
                  Dmitry M. Chudakov},
  title        = {VDJdb: a curated database of T-cell receptor sequences with known
                  antigen specificity},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D419--D427},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx760},
  doi          = {10.1093/NAR/GKX760},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ShugayBZVCDKSKE18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/CalisMGWSSKP13,
  author       = {Jorg J. A. Calis and
                  Matt Maybeno and
                  Jason A. Greenbaum and
                  Daniela Weiskopf and
                  Aruna D. De Silva and
                  Alessandro Sette and
                  Can Kesmir and
                  Bj{\"{o}}rn Peters},
  title        = {Properties of {MHC} Class {I} Presented Peptides That Enhance Immunogenicity},
  journal      = {PLoS Comput. Biol.},
  volume       = {9},
  number       = {10},
  year         = {2013},
  url          = {https://doi.org/10.1371/journal.pcbi.1003266},
  doi          = {10.1371/JOURNAL.PCBI.1003266},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/CalisMGWSSKP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/Carrillo-BustamanteKB13,
  author       = {Paola Carrillo{-}Bustamante and
                  Can Kesmir and
                  Rob J. De Boer},
  title        = {Virus Encoded MHC-Like Decoys Diversify the Inhibitory {KIR} Repertoire},
  journal      = {PLoS Comput. Biol.},
  volume       = {9},
  number       = {10},
  year         = {2013},
  url          = {https://doi.org/10.1371/journal.pcbi.1003264},
  doi          = {10.1371/JOURNAL.PCBI.1003264},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/Carrillo-BustamanteKB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/CalisBK12,
  author       = {Jorg J. A. Calis and
                  Rob J. De Boer and
                  Can Kesmir},
  title        = {Degenerate T-cell Recognition of Peptides on {MHC} Molecules Creates
                  Large Holes in the T-cell Repertoire},
  journal      = {PLoS Comput. Biol.},
  volume       = {8},
  number       = {3},
  year         = {2012},
  url          = {https://doi.org/10.1371/journal.pcbi.1002412},
  doi          = {10.1371/JOURNAL.PCBI.1002412},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/CalisBK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/HoofBHK12,
  author       = {Ilka Hoof and
                  Debbie van Baarle and
                  William H. Hildebrand and
                  Can Kesmir},
  title        = {Proteome Sampling by the {HLA} Class {I} Antigen Processing Pathway},
  journal      = {PLoS Comput. Biol.},
  volume       = {8},
  number       = {5},
  year         = {2012},
  url          = {https://doi.org/10.1371/journal.pcbi.1002517},
  doi          = {10.1371/JOURNAL.PCBI.1002517},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/HoofBHK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/MostowyKHHHWPKB12,
  author       = {Rafal Mostowy and
                  Roger D. Kouyos and
                  Ilka Hoof and
                  Trevor Hinkley and
                  Mojgan Haddad and
                  Jeannette M. Whitcomb and
                  Christos J. Petropoulos and
                  Can Kesmir and
                  Sebastian Bonhoeffer},
  title        = {Estimating the Fitness Cost of Escape from {HLA} Presentation in {HIV-1}
                  Protease and Reverse Transcriptase},
  journal      = {PLoS Comput. Biol.},
  volume       = {8},
  number       = {5},
  year         = {2012},
  url          = {https://doi.org/10.1371/journal.pcbi.1002525},
  doi          = {10.1371/JOURNAL.PCBI.1002525},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/MostowyKHHHWPKB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LundegaardLKBN07,
  author       = {Claus Lundegaard and
                  Ole Lund and
                  Can Kesmir and
                  S{\o}ren Brunak and
                  Morten Nielsen},
  title        = {Modeling the adaptive immune system: predictions and simulations},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {24},
  pages        = {3265--3275},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm471},
  doi          = {10.1093/BIOINFORMATICS/BTM471},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LundegaardLKBN07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@book{DBLP:books/daglib/0014218,
  author       = {Ole Lund and
                  Morten Nielsen and
                  Claus Lundegaard and
                  Can Kesmir and
                  S{\o}ren Brunak},
  title        = {Immunological bioinformatics},
  series       = {Computational molecular biology},
  publisher    = {{AAAI} Press},
  year         = {2005},
  isbn         = {978-0-262-12280-1},
  timestamp    = {Fri, 12 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/daglib/0014218.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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