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BibTeX records: Michal Linial
@article{DBLP:journals/corr/abs-2305-04133, author = {Dan Ofer and Michal Linial}, title = {Whats next? Forecasting scientific research trends}, journal = {CoRR}, volume = {abs/2305.04133}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2305.04133}, doi = {10.48550/ARXIV.2305.04133}, eprinttype = {arXiv}, eprint = {2305.04133}, timestamp = {Thu, 11 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2305-04133.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BrandesOPRL22, author = {Nadav Brandes and Dan Ofer and Yam Peleg and Nadav Rappoport and Michal Linial}, title = {ProteinBERT: a universal deep-learning model of protein sequence and function}, journal = {Bioinform.}, volume = {38}, number = {8}, pages = {2102--2110}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btac020}, doi = {10.1093/BIOINFORMATICS/BTAC020}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BrandesOPRL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Wainer-KatsirL20, author = {Kerem Wainer{-}Katsir and Michal Linial}, title = {{BIRD:} identifying cell doublets via biallelic expression from single cells}, journal = {Bioinform.}, volume = {36}, number = {Supplement-1}, pages = {i251--i257}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa474}, doi = {10.1093/BIOINFORMATICS/BTAA474}, timestamp = {Fri, 25 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Wainer-KatsirL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/BrandesLL20, author = {Nadav Brandes and Nathan Linial and Michal Linial}, editor = {Zhipeng Cai and Ion I. Mandoiu and Giri Narasimhan and Pavel Skums and Xuan Guo}, title = {Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer}, booktitle = {Bioinformatics Research and Applications - 16th International Symposium, {ISBRA} 2020, Moscow, Russia, December 1-4, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12304}, pages = {119--126}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-57821-3\_11}, doi = {10.1007/978-3-030-57821-3\_11}, timestamp = {Fri, 21 Aug 2020 10:12:46 +0200}, biburl = {https://dblp.org/rec/conf/isbra/BrandesLL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/BrandesLL20, author = {Nadav Brandes and Nathan Linial and Michal Linial}, editor = {Russell Schwartz}, title = {{PWAS:} Proteome-Wide Association Study}, booktitle = {Research in Computational Molecular Biology - 24th Annual International Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12074}, pages = {237--239}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-45257-5\_20}, doi = {10.1007/978-3-030-45257-5\_20}, timestamp = {Mon, 04 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/BrandesLL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/Mahlab-AvivLL19, author = {Shelly Mahlab{-}Aviv and Nathan Linial and Michal Linial}, title = {A cell-based probabilistic approach unveils the concerted action of miRNAs}, journal = {PLoS Comput. Biol.}, volume = {15}, number = {12}, year = {2019}, url = {https://doi.org/10.1371/journal.pcbi.1007204}, doi = {10.1371/JOURNAL.PCBI.1007204}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/Mahlab-AvivLL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/BrandesOL16, author = {Nadav Brandes and Dan Ofer and Michal Linial}, title = {{ASAP:} a machine learning framework for local protein properties}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw133}, doi = {10.1093/DATABASE/BAW133}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/BrandesOL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/RappoportL15, author = {Nadav Rappoport and Michal Linial}, title = {ProtoBug: functional families from the complete proteomes of insects}, journal = {Database J. Biol. Databases Curation}, volume = {2015}, year = {2015}, url = {https://doi.org/10.1093/database/bau122}, doi = {10.1093/DATABASE/BAU122}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/RappoportL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KarpBKLLSHR15, author = {Peter D. Karp and Bonnie Berger and Diane E. Kovats and Thomas Lengauer and Michal Linial and Pardis Sabeti and Winston Hide and Burkhard Rost}, title = {Message from the {ISCB:} {ISCB} Ebola award for important future research on the computational biology of Ebola virus}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {616--617}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv019}, doi = {10.1093/BIOINFORMATICS/BTV019}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KarpBKLLSHR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OferL15, author = {Dan Ofer and Michal Linial}, title = {ProFET: Feature engineering captures high-level protein functions}, journal = {Bioinform.}, volume = {31}, number = {21}, pages = {3429--3436}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv345}, doi = {10.1093/BIOINFORMATICS/BTV345}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/OferL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KarpBKLLSHR15, author = {Peter D. Karp and Bonnie Berger and Diane E. Kovats and Thomas Lengauer and Michal Linial and Pardis Sabeti and Winston Hide and Burkhard Rost}, title = {{ISCB} Ebola Award for Important Future Research on the Computational Biology of Ebola Virus}, journal = {PLoS Comput. Biol.}, volume = {11}, number = {1}, year = {2015}, url = {https://doi.org/10.1371/journal.pcbi.1004087}, doi = {10.1371/JOURNAL.PCBI.1004087}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KarpBKLLSHR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/FriedmanKL14, author = {Yitzhak Friedman and Solange Karsenty and Michal Linial}, title = {miRror-Suite: decoding coordinated regulation by microRNAs}, journal = {Database J. Biol. Databases Curation}, volume = {2014}, year = {2014}, url = {https://doi.org/10.1093/database/bau043}, doi = {10.1093/DATABASE/BAU043}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/FriedmanKL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/editors14, title = {{ISCB/SPRINGER} series in computational biology}, journal = {Bioinform.}, volume = {30}, number = {1}, pages = {146--147}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt670}, doi = {10.1093/BIOINFORMATICS/BTT670}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/editors14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OferL14, author = {Dan Ofer and Michal Linial}, title = {NeuroPID: a predictor for identifying neuropeptide precursors from metazoan proteomes}, journal = {Bioinform.}, volume = {30}, number = {7}, pages = {931--940}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt725}, doi = {10.1093/BIOINFORMATICS/BTT725}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/OferL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WassMLRF14, author = {Mark N. Wass and Sean D. Mooney and Michal Linial and Predrag Radivojac and Iddo Friedberg}, title = {The automated function prediction {SIG} looks back at 2013 and prepares for 2014}, journal = {Bioinform.}, volume = {30}, number = {14}, pages = {2091--2092}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu117}, doi = {10.1093/BIOINFORMATICS/BTU117}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WassMLRF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RappoportSLL14, author = {Nadav Rappoport and Amos Stern and Nathan Linial and Michal Linial}, title = {Entropy-driven partitioning of the hierarchical protein space}, journal = {Bioinform.}, volume = {30}, number = {17}, pages = {624--630}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu478}, doi = {10.1093/BIOINFORMATICS/BTU478}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RappoportSLL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KarsentyROZL14, author = {Solange Karsenty and Nadav Rappoport and Dan Ofer and Adva Zair and Michal Linial}, title = {NeuroPID: a classifier of neuropeptide precursors}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Webserver-Issue}, pages = {182--186}, year = {2014}, url = {https://doi.org/10.1093/nar/gku363}, doi = {10.1093/NAR/GKU363}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KarsentyROZL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/MahlabL14, author = {Shelly Mahlab and Michal Linial}, title = {Speed Controls in Translating Secretory Proteins in Eukaryotes - an Evolutionary Perspective}, journal = {PLoS Comput. Biol.}, volume = {10}, number = {1}, year = {2014}, url = {https://doi.org/10.1371/journal.pcbi.1003294}, doi = {10.1371/JOURNAL.PCBI.1003294}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/MahlabL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RappoportL13, author = {Nadav Rappoport and Michal Linial}, title = {Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex}, journal = {{BMC} Bioinform.}, volume = {14}, number = {{S-3}}, pages = {S11}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-S3-S11}, doi = {10.1186/1471-2105-14-S3-S11}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RappoportL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/FriedmanL13, author = {Yitzhak Friedman and Michal Linial}, title = {Mirror2.0: a Platform for Assessing the Joint Action of microRNAs in Cell regulation}, journal = {J. Bioinform. Comput. Biol.}, volume = {11}, number = {6}, year = {2013}, url = {https://doi.org/10.1142/S0219720013430129}, doi = {10.1142/S0219720013430129}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/FriedmanL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biostec/MahlabLL13, author = {Shelly Mahlab and Itai Linial and Michal Linial}, editor = {Pedro Fernandes and Jordi Sol{\'{e}}{-}Casals and Ana L. N. Fred and Hugo Gamboa}, title = {Translation Efficiency of Synaptic Proteins and Its Coding Sequence Determinants}, booktitle = {{BIOINFORMATICS} 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11 - 14 February, 2013}, pages = {151--157}, publisher = {SciTePress}, year = {2013}, timestamp = {Tue, 01 Oct 2013 18:44:42 +0200}, biburl = {https://dblp.org/rec/conf/biostec/MahlabLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NaamatiFBL12, author = {Guy Naamati and Yitzhak Friedman and Ohad Balaga and Michal Linial}, title = {Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs}, journal = {Bioinform.}, volume = {28}, number = {7}, pages = {983--990}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts077}, doi = {10.1093/BIOINFORMATICS/BTS077}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NaamatiFBL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RostGLLMMSHK12, author = {Burkhard Rost and Terry Gaasterland and Thomas Lengauer and Michal Linial and Scott Markel and B. J. Morrison McKay and Reinhard Schneider and Paul Horton and Janet Kelso}, title = {Paving the future: finding suitable {ISMB} venues}, journal = {Bioinform.}, volume = {28}, number = {19}, pages = {2556--2559}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts420}, doi = {10.1093/BIOINFORMATICS/BTS420}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RostGLLMMSHK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/RappoportKSLL12, author = {Nadav Rappoport and Solange Karsenty and Amos Stern and Nathan Linial and Michal Linial}, title = {ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {313--320}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr1027}, doi = {10.1093/NAR/GKR1027}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/RappoportKSLL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/RappoportL12, author = {Nadav Rappoport and Michal Linial}, title = {Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures}, journal = {PLoS Comput. Biol.}, volume = {8}, number = {2}, year = {2012}, url = {https://doi.org/10.1371/journal.pcbi.1002364}, doi = {10.1371/JOURNAL.PCBI.1002364}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/RappoportL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PratFLL11, author = {Yosef Prat and Menachem Fromer and Nathan Linial and Michal Linial}, title = {Recovering key biological constituents through sparse representation of gene expression}, journal = {Bioinform.}, volume = {27}, number = {5}, pages = {655--661}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr002}, doi = {10.1093/BIOINFORMATICS/BTR002}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PratFLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchweigerLL11, author = {Regev Schweiger and Michal Linial and Nathan Linial}, title = {Generative probabilistic models for protein-protein interaction networks - the biclique perspective}, journal = {Bioinform.}, volume = {27}, number = {13}, pages = {142--148}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr201}, doi = {10.1093/BIOINFORMATICS/BTR201}, timestamp = {Tue, 08 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchweigerLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AskenaziL11, author = {Manor Askenazi and Michal Linial}, title = {{ARISTO:} ontological classification of small molecules by electron ionization-mass spectrometry}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Web-Server-Issue}, pages = {505--510}, year = {2011}, url = {https://doi.org/10.1093/nar/gkr403}, doi = {10.1093/NAR/GKR403}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AskenaziL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/PratFLL11, author = {Yosef Prat and Menachem Fromer and Michal Linial and Nathan Linial}, editor = {Vineet Bafna and S{\"{u}}leyman Cenk Sahinalp}, title = {Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles}, booktitle = {Research in Computational Molecular Biology - 15th Annual International Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6577}, pages = {355--357}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-20036-6\_33}, doi = {10.1007/978-3-642-20036-6\_33}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/PratFLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FriedmanNL10, author = {Yitzhak Friedman and Guy Naamati and Michal Linial}, title = {MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets}, journal = {Bioinform.}, volume = {26}, number = {15}, pages = {1920--1921}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq298}, doi = {10.1093/BIOINFORMATICS/BTQ298}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/FriedmanNL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FromerL10, author = {Menachem Fromer and Michal Linial}, title = {Exposing the co-adaptive potential of protein-protein interfaces through computational sequence design}, journal = {Bioinform.}, volume = {26}, number = {18}, pages = {2266--2272}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq412}, doi = {10.1093/BIOINFORMATICS/BTQ412}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/FromerL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NaamatiAL10, author = {Guy Naamati and Manor Askenazi and Michal Linial}, title = {A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes}, journal = {Bioinform.}, volume = {26}, number = {18}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq375}, doi = {10.1093/BIOINFORMATICS/BTQ375}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NaamatiAL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FromerYHSWL10, author = {Menachem Fromer and Chen Yanover and Amir Harel and Ori Shachar and Yair Weiss and Michal Linial}, title = {{SPRINT:} side-chain prediction inference toolbox for multistate protein design}, journal = {Bioinform.}, volume = {26}, number = {19}, pages = {2466--2467}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq445}, doi = {10.1093/BIOINFORMATICS/BTQ445}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/FromerYHSWL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GottliebVLH10, author = {Assaf Gottlieb and Roy Varshavsky and Michal Linial and David Horn}, title = {UFFizi: a generic platform for ranking informative features}, journal = {{BMC} Bioinform.}, volume = {11}, pages = {300}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-300}, doi = {10.1186/1471-2105-11-300}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GottliebVLH10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/RappoportFSL10, author = {Nadav Rappoport and Menachem Fromer and Regev Schweiger and Michal Linial}, title = {{PANDORA:} analysis of protein and peptide sets through the hierarchical integration of annotations}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Web-Server-Issue}, pages = {84--89}, year = {2010}, url = {https://doi.org/10.1093/nar/gkq320}, doi = {10.1093/NAR/GKQ320}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/RappoportFSL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/NaamatiAL09, author = {Guy Naamati and Manor Askenazi and Michal Linial}, title = {ClanTox: a classifier of short animal toxins}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Web-Server-Issue}, pages = {363--368}, year = {2009}, url = {https://doi.org/10.1093/nar/gkp299}, doi = {10.1093/NAR/GKP299}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/NaamatiAL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LinialMMR08, author = {Michal Linial and Jill P. Mesirov and B. J. Morrison McKay and Burkhard Rost}, title = {{ISMB} 2008 Toronto}, journal = {PLoS Comput. Biol.}, volume = {4}, number = {6}, year = {2008}, url = {https://doi.org/10.1371/journal.pcbi.1000094}, doi = {10.1371/JOURNAL.PCBI.1000094}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LinialMMR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/LoewensteinL08, author = {Yaniv Loewenstein and Michal Linial}, title = {Connect the dots: exposing hidden protein family connections from the entire sequence tree}, booktitle = {ECCB'08 Proceedings, Seventh European Conference on Computational Biology, 22-26 September 2008, Cagliari, Italy}, pages = {193--199}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn301}, doi = {10.1093/BIOINFORMATICS/BTN301}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eccb/LoewensteinL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/LoewensteinPFL08, author = {Yaniv Loewenstein and Elon Portugaly and Menachem Fromer and Michal Linial}, title = {Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space}, booktitle = {Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008}, pages = {41--49}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn174}, doi = {10.1093/BIOINFORMATICS/BTN174}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ismb/LoewensteinPFL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/bird/2008, editor = {Mourad Elloumi and Josef K{\"{u}}ng and Michal Linial and Robert F. Murphy and Kristan Schneider and Cristian Toma}, title = {Bioinformatics Research and Development, Second International Conference, {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings}, series = {Communications in Computer and Information Science}, volume = {13}, publisher = {Springer}, year = {2008}, isbn = {978-3-540-70598-7}, timestamp = {Thu, 11 Sep 2008 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bird/2008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/dagstuhl/2008P8101, editor = {Christian G. Huber and Oliver Kohlbacher and Michal Linial and Kathrin Marcus and Knut Reinert}, title = {Computational Proteomics, 02.03. - 07.03.2008}, series = {Dagstuhl Seminar Proceedings}, volume = {08101}, publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik (IBFI), Schloss Dagstuhl, Germany}, year = {2008}, url = {http://drops.dagstuhl.de/portals/08101/}, timestamp = {Thu, 10 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/dagstuhl/2008P8101.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dagstuhl/ReinertHMLK08, author = {Knut Reinert and Christian G. Huber and Kathrin Marcus and Michal Linial and Oliver Kohlbacher}, editor = {Christian G. Huber and Oliver Kohlbacher and Michal Linial and Kathrin Marcus and Knut Reinert}, title = {08101 Abstracts Collection - Computational Proteomics}, booktitle = {Computational Proteomics, 02.03. - 07.03.2008}, series = {Dagstuhl Seminar Proceedings}, volume = {08101}, publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik (IBFI), Schloss Dagstuhl, Germany}, year = {2008}, url = {http://drops.dagstuhl.de/opus/volltexte/2008/1784/}, timestamp = {Thu, 10 Jun 2021 13:02:06 +0200}, biburl = {https://dblp.org/rec/conf/dagstuhl/ReinertHMLK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VarshavskyGHL07, author = {Roy Varshavsky and Assaf Gottlieb and David Horn and Michal Linial}, title = {Unsupervised feature selection under perturbations: meeting the challenges of biological data}, journal = {Bioinform.}, volume = {23}, number = {24}, pages = {3343--3349}, year = {2007}, url = {https://doi.org/10.1093/bioinformatics/btm528}, doi = {10.1093/BIOINFORMATICS/BTM528}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/VarshavskyGHL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PortugalyLL07, author = {Elon Portugaly and Nathan Linial and Michal Linial}, title = {{EVEREST:} a collection of evolutionary conserved protein domains}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Database-Issue}, pages = {241--246}, year = {2007}, url = {https://doi.org/10.1093/nar/gkl850}, doi = {10.1093/NAR/GKL850}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PortugalyLL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/VarshavskyHL07, author = {Roy Varshavsky and David Horn and Michal Linial}, editor = {Ion I. Mandoiu and Alexander Zelikovsky}, title = {Clustering Algorithms Optimizer: {A} Framework for Large Datasets}, booktitle = {Bioinformatics Research and Applications, Third International Symposium, {ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4463}, pages = {85--96}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-72031-7\_8}, doi = {10.1007/978-3-540-72031-7\_8}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbra/VarshavskyHL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VarshavskyFML07, author = {Roy Varshavsky and Menachem Fromer and Amit Man and Michal Linial}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {12--24}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_3}, doi = {10.1007/978-3-540-74126-8\_3}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VarshavskyFML07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Linial06, author = {Michal Linial}, title = {The Secrets of a Functional Synapse - From a Computational and Experimental Viewpoint}, journal = {{BMC} Bioinform.}, volume = {7}, number = {{S-1}}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-S1-S6}, doi = {10.1186/1471-2105-7-S1-S6}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Linial06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PortugalyHLL06, author = {Elon Portugaly and Amir Harel and Nathan Linial and Michal Linial}, title = {{EVEREST:} automatic identification and classification of protein domains in all protein sequences}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {277}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-277}, doi = {10.1186/1471-2105-7-277}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PortugalyHLL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/VarshavskyGLH06, author = {Roy Varshavsky and Assaf Gottlieb and Michal Linial and David Horn}, title = {Novel Unsupervised Feature Filtering of Biological Data}, booktitle = {Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006}, pages = {507--513}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btl214}, doi = {10.1093/BIOINFORMATICS/BTL214}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ismb/VarshavskyGLH06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KiferSL05, author = {Ilona Kifer and Ori Sasson and Michal Linial}, title = {Predicting fold novelty based on ProtoNet hierarchical classification}, journal = {Bioinform.}, volume = {21}, number = {7}, pages = {1020--1027}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti135}, doi = {10.1093/BIOINFORMATICS/BTI135}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KiferSL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KaplanL05, author = {Noam Kaplan and Michal Linial}, title = {Automatic detection of false annotations via binary property clustering}, journal = {{BMC} Bioinform.}, volume = {6}, pages = {46}, year = {2005}, url = {https://doi.org/10.1186/1471-2105-6-46}, doi = {10.1186/1471-2105-6-46}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KaplanL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KaplanSIFFFPLL05, author = {Noam Kaplan and Ori Sasson and Uri Inbar and Moriah Friedlich and Menachem Fromer and Hillel Fleischer and Elon Portugaly and Nathan Linial and Michal Linial}, title = {ProtoNet 4.0: {A} hierarchical classification of one million protein sequences}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Database-Issue}, pages = {216--218}, year = {2005}, url = {https://doi.org/10.1093/nar/gki007}, doi = {10.1093/NAR/GKI007}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KaplanSIFFFPLL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SassonL05, author = {Ori Sasson and Michal Linial}, title = {ProTarget: automatic prediction of protein structure novelty}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Web-Server-Issue}, pages = {81--84}, year = {2005}, url = {https://doi.org/10.1093/nar/gki389}, doi = {10.1093/NAR/GKI389}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SassonL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BahirL05, author = {Iris Bahir and Michal Linial}, title = {ProTeus: identifying signatures in protein termini}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Web-Server-Issue}, pages = {277--280}, year = {2005}, url = {https://doi.org/10.1093/nar/gki371}, doi = {10.1093/NAR/GKI371}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BahirL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/SadkaL05, author = {Tali Sadka and Michal Linial}, title = {Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains}, booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005}, pages = {378--386}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti1035}, doi = {10.1093/BIOINFORMATICS/BTI1035}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ismb/SadkaL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ispa/VarshavskyLH05, author = {Roy Varshavsky and Michal Linial and David Horn}, editor = {Guihai Chen and Yi Pan and Minyi Guo and Jian Lu}, title = {{COMPACT:} {A} Comparative Package for Clustering Assessment}, booktitle = {Parallel and Distributed Processing and Applications - {ISPA} 2005 Workshops, {ISPA} 2005 International Workshops AEPP, ASTD, BIOS, GCIC, IADS, MASN, SGCA, and WISA, Nanjing, China, November 2-5, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3759}, pages = {159--167}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11576259\_18}, doi = {10.1007/11576259\_18}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ispa/VarshavskyLH05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KaplanFFL04, author = {Noam Kaplan and Moriah Friedlich and Menachem Fromer and Michal Linial}, title = {A functional hierarchical organization of the protein sequence space}, journal = {{BMC} Bioinform.}, volume = {5}, pages = {196}, year = {2004}, url = {https://doi.org/10.1186/1471-2105-5-196}, doi = {10.1186/1471-2105-5-196}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KaplanFFL04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SassonVFPBLL03, author = {Ori Sasson and Avishay Vaaknin and Hillel Fleischer and Elon Portugaly and Yonatan Bilu and Nathan Linial and Michal Linial}, title = {ProtoNet: hierarchical classification of the protein space}, journal = {Nucleic Acids Res.}, volume = {31}, number = {1}, pages = {348--352}, year = {2003}, url = {https://doi.org/10.1093/nar/gkg096}, doi = {10.1093/NAR/GKG096}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SassonVFPBLL03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PortugalyKL02, author = {Elon Portugaly and Ilona Kifer and Michal Linial}, title = {Selecting targets for structural determination by navigating in a graph of protein families}, journal = {Bioinform.}, volume = {18}, number = {7}, pages = {899--907}, year = {2002}, url = {https://doi.org/10.1093/bioinformatics/18.7.899}, doi = {10.1093/BIOINFORMATICS/18.7.899}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PortugalyKL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BiluL02, author = {Yonatan Bilu and Michal Linial}, title = {The Advantage of Functional Prediction Based on Clustering of Yeast Genes and Its Correlation with Non-Sequence Based Classifications}, journal = {J. Comput. Biol.}, volume = {9}, number = {2}, pages = {193--210}, year = {2002}, url = {https://doi.org/10.1089/10665270252935412}, doi = {10.1089/10665270252935412}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BiluL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/SassonLL02, author = {Ori Sasson and Nathan Linial and Michal Linial}, title = {The metric space of proteins-comparative study of clustering algorithms}, booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada}, pages = {14--21}, year = {2002}, timestamp = {Wed, 29 Jun 2011 14:55:41 +0200}, biburl = {https://dblp.org/rec/conf/ismb/SassonLL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BiluL02, author = {Yonatan Bilu and Michal Linial}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Functional Consequences in Metabolic Pathways from Phylogenetic Profiles}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {263--276}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_20}, doi = {10.1007/3-540-45784-4\_20}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BiluL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/BiluL01, author = {Yonatan Bilu and Michal Linial}, editor = {Thomas Lengauer}, title = {On the predictive power of sequence similarity in yeast}, booktitle = {Proceedings of the Fifth Annual International Conference on Computational Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada, April 22-25, 2001}, pages = {39--48}, publisher = {{ACM}}, year = {2001}, url = {https://doi.org/10.1145/369133.369168}, doi = {10.1145/369133.369168}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/BiluL01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/FriedmanLNP00, author = {Nir Friedman and Michal Linial and Iftach Nachman and Dana Pe'er}, title = {Using Bayesian Networks to Analyze Expression Data}, journal = {J. Comput. Biol.}, volume = {7}, number = {3-4}, pages = {601--620}, year = {2000}, url = {https://doi.org/10.1089/106652700750050961}, doi = {10.1089/106652700750050961}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/FriedmanLNP00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/YonaLL00, author = {Golan Yona and Nathan Linial and Michal Linial}, title = {ProtoMap: automatic classification of protein sequences and hierarchy of protein families}, journal = {Nucleic Acids Res.}, volume = {28}, number = {1}, pages = {49--55}, year = {2000}, url = {https://doi.org/10.1093/nar/28.1.49}, doi = {10.1093/NAR/28.1.49}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/YonaLL00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/FriedmanLNP00, author = {Nir Friedman and Michal Linial and Iftach Nachman and Dana Pe'er}, editor = {Ron Shamir and Satoru Miyano and Sorin Istrail and Pavel A. Pevzner and Michael S. Waterman}, title = {Using Bayesian networks to analyze expression data}, booktitle = {Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000}, pages = {127--135}, publisher = {{ACM}}, year = {2000}, url = {https://doi.org/10.1145/332306.332355}, doi = {10.1145/332306.332355}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/recomb/FriedmanLNP00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/PortugalyL00, author = {Elon Portugaly and Michal Linial}, editor = {Ron Shamir and Satoru Miyano and Sorin Istrail and Pavel A. Pevzner and Michael S. Waterman}, title = {Probabilities for having a new fold on the basis of a map of all protein sequences}, booktitle = {Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000}, pages = {237--244}, publisher = {{ACM}}, year = {2000}, url = {https://doi.org/10.1145/332306.332561}, doi = {10.1145/332306.332561}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/PortugalyL00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/YonaLTL98, author = {Golan Yona and Nathan Linial and Naftali Tishby and Michal Linial}, editor = {Janice I. Glasgow and Timothy G. Littlejohn and Fran{\c{c}}ois Major and Richard H. Lathrop and David Sankoff and Christoph W. Sensen}, title = {A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein Sequences}, booktitle = {Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montr{\'{e}}al, Qu{\'{e}}bec, Canada, June 28 - July 1, 1998}, pages = {212--221}, publisher = {{AAAI}}, year = {1998}, url = {http://www.aaai.org/Library/ISMB/1998/ismb98-025.php}, timestamp = {Thu, 27 Jun 2019 11:28:34 +0200}, biburl = {https://dblp.org/rec/conf/ismb/YonaLTL98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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