BibTeX records: Hongfang Liu

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@article{DBLP:journals/biodb/DoganKCWCAMCEPV19,
  author    = {Rezarta Islamaj Dogan and
               Sun Kim and
               Andrew Chatr{-}aryamontri and
               Chih{-}Hsuan Wei and
               Donald C. Comeau and
               Rui Antunes and
               S{\'{e}}rgio Matos and
               Qingyu Chen and
               Aparna Elangovan and
               Nagesh C. Panyam and
               Karin Verspoor and
               Hongfang Liu and
               Yanshan Wang and
               Zhuang Liu and
               Berna Altinel and
               Zehra Melce H{\"{u}}s{\"{u}}nbeyi and
               Arzucan {\"{O}}zg{\"{u}}r and
               Aris Fergadis and
               Chen{-}Kai Wang and
               Hong{-}Jie Dai and
               Tung Tran and
               Ramakanth Kavuluru and
               Ling Luo and
               Albert Steppi and
               Jinfeng Zhang and
               Jinchan Qu and
               Zhiyong Lu},
  title     = {Overview of the BioCreative {VI} Precision Medicine Track: mining
               protein interactions and mutations for precision medicine},
  journal   = {Database},
  volume    = {2019},
  pages     = {bay147},
  year      = {2019},
  url       = {https://doi.org/10.1093/database/bay147},
  doi       = {10.1093/database/bay147},
  timestamp = {Thu, 21 Feb 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/DoganKCWCAMCEPV19},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/WangSLSWAAL19,
  author    = {Yanshan Wang and
               Sunghwan Sohn and
               Sijia Liu and
               Feichen Shen and
               Liwei Wang and
               Elizabeth J. Atkinson and
               Shreyasee Amin and
               Hongfang Liu},
  title     = {A clinical text classification paradigm using weak supervision and
               deep representation},
  journal   = {{BMC} Med. Inf. {\&} Decision Making},
  volume    = {19},
  number    = {1},
  pages     = {1:1--1:13},
  year      = {2019},
  url       = {https://doi.org/10.1186/s12911-018-0723-6},
  doi       = {10.1186/s12911-018-0723-6},
  timestamp = {Wed, 13 Feb 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/midm/WangSLSWAAL19},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ShenZWRWLL19,
  author    = {Feichen Shen and
               Yiqing Zhao and
               Liwei Wang and
               Majid Rastegar{-}Mojarad and
               Yanshan Wang and
               Sijia Liu and
               Hongfang Liu},
  title     = {Rare disease knowledge enrichment through a data-driven approach},
  journal   = {{BMC} Med. Inf. {\&} Decision Making},
  volume    = {19},
  number    = {1},
  pages     = {32:1--32:11},
  year      = {2019},
  url       = {https://doi.org/10.1186/s12911-019-0752-9},
  doi       = {10.1186/s12911-019-0752-9},
  timestamp = {Thu, 28 Feb 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/midm/ShenZWRWLL19},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GonzalezLLWBCDF19,
  author    = {Graciela Gonzalez and
               Zhiyong Lu and
               Robert Leaman and
               Davy Weissenbacher and
               Mary Regina Boland and
               Yong Chen and
               Jingcheng Du and
               Juliane Fluck and
               Casey S. Greene and
               John Holmes and
               Aditya Kashyap and
               Rikke Linnemann Nielsen and
               Zhengqing Ouyang and
               Sebastian Schaaf and
               Jaclyn N. Taroni and
               Cui Tao and
               Yuping Zhang and
               Hongfang Liu},
  title     = {Text Mining and Machine Learning for Precision Medicine},
  booktitle = {Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island
               of Hawaii, Hawaii, USA, January 3-7, 2019},
  pages     = {449--454},
  year      = {2019},
  crossref  = {DBLP:conf/psb/2019},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb19/wkshop-text.pdf},
  timestamp = {Tue, 15 Jan 2019 16:24:24 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/psb/GonzalezLLWBCDF19},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-07601,
  author    = {Sijia Liu and
               Yanshan Wang and
               Andrew Wen and
               Liwei Wang and
               Na Hong and
               Feichen Shen and
               Steven Bedrick and
               William R. Hersh and
               Hongfang Liu},
  title     = {{CREATE:} Cohort Retrieval Enhanced by Analysis of Text from Electronic
               Health Records using {OMOP} Common Data Model},
  journal   = {CoRR},
  volume    = {abs/1901.07601},
  year      = {2019},
  url       = {http://arxiv.org/abs/1901.07601},
  archivePrefix = {arXiv},
  eprint    = {1901.07601},
  timestamp = {Sat, 02 Feb 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1901-07601},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiuSEWRCL18,
  author    = {Sijia Liu and
               Feichen Shen and
               Ravikumar Komandur Elayavilli and
               Yanshan Wang and
               Majid Rastegar{-}Mojarad and
               Vipin Chaudhary and
               Hongfang Liu},
  title     = {Extracting chemical-protein relations using attention-based neural
               networks},
  journal   = {Database},
  volume    = {2018},
  pages     = {bay102},
  year      = {2018},
  url       = {https://doi.org/10.1093/database/bay102},
  doi       = {10.1093/database/bay102},
  timestamp = {Sat, 01 Dec 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/LiuSEWRCL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/AfzalMSLCSKA18,
  author    = {Naveed Afzal and
               Vishnu Priya Mallipeddi and
               Sunghwan Sohn and
               Hongfang Liu and
               Rajeev Chaudhry and
               Christopher Scott and
               Iftikhar J. Kullo and
               Adelaide M. Arruda{-}Olson},
  title     = {Natural language processing of clinical notes for identification of
               critical limb ischemia},
  journal   = {I. J. Medical Informatics},
  volume    = {111},
  pages     = {83--89},
  year      = {2018},
  url       = {https://doi.org/10.1016/j.ijmedinf.2017.12.024},
  doi       = {10.1016/j.ijmedinf.2017.12.024},
  timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/ijmi/AfzalMSLCSKA18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SoysalWJWPLX18,
  author    = {Ergin Soysal and
               Jingqi Wang and
               Min Jiang and
               Yonghui Wu and
               Serguei Pakhomov and
               Hongfang Liu and
               Hua Xu},
  title     = {{CLAMP} - a toolkit for efficiently building customized clinical natural
               language processing pipelines},
  journal   = {{JAMIA}},
  volume    = {25},
  number    = {3},
  pages     = {331--336},
  year      = {2018},
  url       = {https://doi.org/10.1093/jamia/ocx132},
  doi       = {10.1093/jamia/ocx132},
  timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/SoysalWJWPLX18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnWWKRAJL18,
  author    = {Sunghwan Sohn and
               Yanshan Wang and
               Chung{-}Il Wi and
               Elizabeth A. Krusemark and
               Euijung Ryu and
               Mir H. Ali and
               Young J. Juhn and
               Hongfang Liu},
  title     = {Clinical documentation variations and {NLP} system portability: a
               case study in asthma birth cohorts across institutions},
  journal   = {{JAMIA}},
  volume    = {25},
  number    = {3},
  pages     = {353--359},
  year      = {2018},
  url       = {https://doi.org/10.1093/jamia/ocx138},
  doi       = {10.1093/jamia/ocx138},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/SohnWWKRAJL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangWRMSALZMSL18,
  author    = {Yanshan Wang and
               Liwei Wang and
               Majid Rastegar{-}Mojarad and
               Sungrim Moon and
               Feichen Shen and
               Naveed Afzal and
               Sijia Liu and
               Yuqun Zeng and
               Saeed Mehrabi and
               Sunghwan Sohn and
               Hongfang Liu},
  title     = {Clinical information extraction applications: {A} literature review},
  journal   = {Journal of Biomedical Informatics},
  volume    = {77},
  pages     = {34--49},
  year      = {2018},
  url       = {https://doi.org/10.1016/j.jbi.2017.11.011},
  doi       = {10.1016/j.jbi.2017.11.011},
  timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/WangWRMSALZMSL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WuLSMWJL18,
  author    = {Stephen T. Wu and
               Sijia Liu and
               Sunghwan Sohn and
               Sungrim Moon and
               Chung{-}Il Wi and
               Young J. Juhn and
               Hongfang Liu},
  title     = {Modeling asynchronous event sequences with RNNs},
  journal   = {Journal of Biomedical Informatics},
  volume    = {83},
  pages     = {167--177},
  year      = {2018},
  url       = {https://doi.org/10.1016/j.jbi.2018.05.016},
  doi       = {10.1016/j.jbi.2018.05.016},
  timestamp = {Sat, 11 Aug 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/WuLSMWJL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangLARWSKL18,
  author    = {Yanshan Wang and
               Sijia Liu and
               Naveed Afzal and
               Majid Rastegar{-}Mojarad and
               Liwei Wang and
               Feichen Shen and
               Paul Kingsbury and
               Hongfang Liu},
  title     = {A comparison of word embeddings for the biomedical natural language
               processing},
  journal   = {Journal of Biomedical Informatics},
  volume    = {87},
  pages     = {12--20},
  year      = {2018},
  url       = {https://doi.org/10.1016/j.jbi.2018.09.008},
  doi       = {10.1016/j.jbi.2018.09.008},
  timestamp = {Wed, 26 Dec 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/WangLARWSKL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ZhaoFLL18,
  author    = {Yiqing Zhao and
               Nooshin J. Fesharaki and
               Hongfang Liu and
               Jake Luo},
  title     = {Using data-driven sublanguage pattern mining to induce knowledge models:
               application in medical image reports knowledge representation},
  journal   = {{BMC} Med. Inf. {\&} Decision Making},
  volume    = {18},
  number    = {1},
  pages     = {61:1--61:13},
  year      = {2018},
  url       = {https://doi.org/10.1186/s12911-018-0645-3},
  doi       = {10.1186/s12911-018-0645-3},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/midm/ZhaoFLL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/HongZWLYHLLJ18,
  author    = {Na Hong and
               Ning Zhang and
               Huawei Wu and
               Shanshan Lu and
               Yue Yu and
               Li Hou and
               Yinying Lu and
               Hongfang Liu and
               Guoqian Jiang},
  title     = {Preliminary exploration of survival analysis using the {OHDSI} common
               data model: a case study of intrahepatic cholangiocarcinoma},
  journal   = {{BMC} Med. Inf. {\&} Decision Making},
  volume    = {18},
  number    = {{S-5}},
  pages     = {81--88},
  year      = {2018},
  url       = {https://doi.org/10.1186/s12911-018-0686-7},
  doi       = {10.1186/s12911-018-0686-7},
  timestamp = {Sun, 23 Dec 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/midm/HongZWLYHLLJ18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Rastegar-Mojarad18,
  author    = {Majid Rastegar{-}Mojarad and
               Sijia Liu and
               Yanshan Wang and
               Naveed Afzal and
               Liwei Wang and
               Feichen Shen and
               Sunyang Fu and
               Hongfang Liu},
  title     = {BioCreative/OHNLP Challenge 2018},
  booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
               Computational Biology, and Health Informatics, {BCB} 2018, Washington,
               DC, USA, August 29 - September 01, 2018},
  pages     = {575},
  year      = {2018},
  crossref  = {DBLP:conf/bcb/2018},
  url       = {https://doi.org/10.1145/3233547.3233672},
  doi       = {10.1145/3233547.3233672},
  timestamp = {Wed, 21 Nov 2018 12:44:25 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/Rastegar-Mojarad18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/PengFWWLLS18,
  author    = {Su{-}Yuan Peng and
               Yadan Fan and
               Liwei Wang and
               Andrew Wen and
               Xusheng Liu and
               Hongfang Liu and
               Feichen Shen},
  title     = {Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms
               of Chronic Kidney Disease Complicated by Metabolic Syndrome},
  booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2018, Madrid, Spain, December 3-6, 2018},
  pages     = {1302--1309},
  year      = {2018},
  crossref  = {DBLP:conf/bibm/2018},
  url       = {http://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621226},
  doi       = {10.1109/BIBM.2018.8621226},
  timestamp = {Tue, 05 Feb 2019 12:34:17 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/PengFWWLLS18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhaoWWYSPRSL18,
  author    = {Yiqing Zhao and
               Yanshan Wang and
               Henry Wang and
               Benjamin Yan and
               Feichen Shen and
               Kevin J. Peterson and
               Walter A. Rocca and
               Jennifer St Sauver and
               Hongfang Liu},
  title     = {Annotating Cohort Data Elements with {OHDSI} Common Data Model to
               Promote Research Reproducibility},
  booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2018, Madrid, Spain, December 3-6, 2018},
  pages     = {1310--1317},
  year      = {2018},
  crossref  = {DBLP:conf/bibm/2018},
  url       = {http://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621269},
  doi       = {10.1109/BIBM.2018.8621269},
  timestamp = {Tue, 05 Feb 2019 12:34:17 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/ZhaoWWYSPRSL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangREWL18,
  author    = {Liwei Wang and
               Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Yanshan Wang and
               Hongfang Liu},
  title     = {Identification of Genetic Causality Statements in Medline Abstracts
               Leveraging Distant Supervision},
  booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
               {ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
  pages     = {1--8},
  year      = {2018},
  crossref  = {DBLP:conf/ichi/2018w},
  url       = {https://doi.org/10.1109/ICHI-W.2018.00008},
  doi       = {10.1109/ICHI-W.2018.00008},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/WangREWL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/Shen0WWWLL18,
  author    = {Feichen Shen and
               Sijia Liu and
               Yanshan Wang and
               Liwei Wang and
               Andrew Wen and
               Andrew H. Limper and
               Hongfang Liu},
  title     = {Constructing Node Embeddings for Human Phenotype Ontology to Assist
               Phenotypic Similarity Measurement},
  booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
               {ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
  pages     = {29--33},
  year      = {2018},
  crossref  = {DBLP:conf/ichi/2018w},
  url       = {https://doi.org/10.1109/ICHI-W.2018.00011},
  doi       = {10.1109/ICHI-W.2018.00011},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/Shen0WWWLL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangWSRL18,
  author    = {Liwei Wang and
               Yanshan Wang and
               Feichen Shen and
               Majid Rastegar{-}Mojarad and
               Hongfang Liu},
  title     = {Predicting Practice Setting Using Topic Modeling},
  booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
               {ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
  pages     = {62--63},
  year      = {2018},
  crossref  = {DBLP:conf/ichi/2018w},
  url       = {https://doi.org/10.1109/ICHI-W.2018.00020},
  doi       = {10.1109/ICHI-W.2018.00020},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/WangWSRL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/Wang0SAAL18,
  author    = {Yanshan Wang and
               Saeed Mehrabi and
               Sunghwan Sohn and
               Elizabeth J. Atkinson and
               Shreyasee Amin and
               Hongfang Liu},
  title     = {Automatic Extraction of Major Osteoporotic Fractures from Radiology
               Reports using Natural Language Processing},
  booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
               {ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
  pages     = {64--65},
  year      = {2018},
  crossref  = {DBLP:conf/ichi/2018w},
  url       = {https://doi.org/10.1109/ICHI-W.2018.00021},
  doi       = {10.1109/ICHI-W.2018.00021},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/Wang0SAAL18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/ZhouLW18,
  author    = {Xin Zhou and
               Hongfang Liu and
               Yanshan Wang},
  title     = {A Comparison of Lifestyle Interventions for Alzheimer's Disease Extracted
               from Clinical Notes and Literature},
  booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
               {ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
  pages     = {74--75},
  year      = {2018},
  crossref  = {DBLP:conf/ichi/2018w},
  url       = {https://doi.org/10.1109/ICHI-W.2018.00026},
  doi       = {10.1109/ICHI-W.2018.00026},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/ZhouLW18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/Gonzalez-Hernandez18,
  author    = {Graciela Gonzalez{-}Hernandez and
               Abeed Sarker and
               Karen O'Connor and
               Casey S. Greene and
               Hongfang Liu},
  title     = {Session Introduction},
  booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
               of Hawaii, Hawaii, USA, January 3-7, 2018},
  pages     = {559--565},
  year      = {2018},
  crossref  = {DBLP:conf/psb/2018},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb18/intro-text.pdf},
  timestamp = {Wed, 16 Jan 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/psb/Gonzalez-Hernandez18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2018,
  editor    = {Amarda Shehu and
               Cathy H. Wu and
               Christina Boucher and
               Jing Li and
               Hongfang Liu and
               Mihai Pop},
  title     = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
               Computational Biology, and Health Informatics, {BCB} 2018, Washington,
               DC, USA, August 29 - September 01, 2018},
  publisher = {{ACM}},
  year      = {2018},
  url       = {https://doi.org/10.1145/3233547},
  doi       = {10.1145/3233547},
  timestamp = {Wed, 21 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/2018},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-00400,
  author    = {Yanshan Wang and
               Sijia Liu and
               Naveed Afzal and
               Majid Rastegar{-}Mojarad and
               Liwei Wang and
               Feichen Shen and
               Paul Kingsbury and
               Hongfang Liu},
  title     = {A Comparison of Word Embeddings for the Biomedical Natural Language
               Processing},
  journal   = {CoRR},
  volume    = {abs/1802.00400},
  year      = {2018},
  url       = {http://arxiv.org/abs/1802.00400},
  archivePrefix = {arXiv},
  eprint    = {1802.00400},
  timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1802-00400},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1803-08850,
  author    = {Feichen Shen and
               David W. Larson and
               James M. Naessens and
               Elizabeth B. Habermann and
               Hongfang Liu and
               Sunghwan Sohn},
  title     = {Detection of Surgical Site Infection Utilizing Automated Feature Generation
               in Clinical Notes},
  journal   = {CoRR},
  volume    = {abs/1803.08850},
  year      = {2018},
  url       = {http://arxiv.org/abs/1803.08850},
  archivePrefix = {arXiv},
  eprint    = {1803.08850},
  timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1803-08850},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1804-07814,
  author    = {Yanshan Wang and
               Sunghwan Sohn and
               Sijia Liu and
               Feichen Shen and
               Liwei Wang and
               Elizabeth J. Atkinson and
               Shreyasee Amin and
               Hongfang Liu},
  title     = {A Deep Representation Empowered Distant Supervision Paradigm for Clinical
               Information Extraction},
  journal   = {CoRR},
  volume    = {abs/1804.07814},
  year      = {2018},
  url       = {http://arxiv.org/abs/1804.07814},
  archivePrefix = {arXiv},
  eprint    = {1804.07814},
  timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1804-07814},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-09397,
  author    = {Yanshan Wang and
               Naveed Afzal and
               Sunyang Fu and
               Liwei Wang and
               Feichen Shen and
               Majid Rastegar{-}Mojarad and
               Hongfang Liu},
  title     = {MedSTS: {A} Resource for Clinical Semantic Textual Similarity},
  journal   = {CoRR},
  volume    = {abs/1808.09397},
  year      = {2018},
  url       = {http://arxiv.org/abs/1808.09397},
  archivePrefix = {arXiv},
  eprint    = {1808.09397},
  timestamp = {Mon, 03 Sep 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1808-09397},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RavikumarRL17,
  author    = {K. E. Ravikumar and
               Majid Rastegar{-}Mojarad and
               Hongfang Liu},
  title     = {BELMiner: adapting a rule-based relation extraction system to extract
               biological expression language statements from bio-medical literature
               evidence sentences},
  journal   = {Database},
  volume    = {2017},
  pages     = {baw156},
  year      = {2017},
  url       = {https://doi.org/10.1093/database/baw156},
  doi       = {10.1093/database/baw156},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/RavikumarRL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WangREL17,
  author    = {Yanshan Wang and
               Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Hongfang Liu},
  title     = {Leveraging word embeddings and medical entity extraction for biomedical
               dataset retrieval using unstructured texts},
  journal   = {Database},
  volume    = {2017},
  pages     = {bax091},
  year      = {2017},
  url       = {https://doi.org/10.1093/database/bax091},
  doi       = {10.1093/database/bax091},
  timestamp = {Thu, 01 Feb 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/WangREL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/comsis/WangCL17,
  author    = {Yanshan Wang and
               In{-}Chan Choi and
               Hongfang Liu},
  title     = {Generalized ensemble model for document ranking in information retrieval},
  journal   = {Comput. Sci. Inf. Syst.},
  volume    = {14},
  number    = {1},
  pages     = {123--151},
  year      = {2017},
  url       = {https://doi.org/10.2298/CSIS160229042W},
  doi       = {10.2298/CSIS160229042W},
  timestamp = {Thu, 18 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/comsis/WangCL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/Rastegar-Mojarad17,
  author    = {Majid Rastegar{-}Mojarad and
               Sunghwan Sohn and
               Liwei Wang and
               Feichen Shen and
               Troy C. Bleeker and
               William A. Cliby and
               Hongfang Liu},
  title     = {Need of informatics in designing interoperable clinical registries},
  journal   = {I. J. Medical Informatics},
  volume    = {108},
  pages     = {78--84},
  year      = {2017},
  url       = {https://doi.org/10.1016/j.ijmedinf.2017.10.004},
  doi       = {10.1016/j.ijmedinf.2017.10.004},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/ijmi/Rastegar-Mojarad17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/WuLWTUBHL17,
  author    = {Stephen T. Wu and
               Sijia Liu and
               Yanshan Wang and
               Tamara Timmons and
               Harsha Uppili and
               Steven Bedrick and
               William R. Hersh and
               Hongfang Liu},
  title     = {Intrainstitutional {EHR} collections for patient-level information
               retrieval},
  journal   = {{JASIST}},
  volume    = {68},
  number    = {11},
  pages     = {2636--2648},
  year      = {2017},
  url       = {https://doi.org/10.1002/asi.23884},
  doi       = {10.1002/asi.23884},
  timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jasis/WuLWTUBHL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AfzalWSWL17,
  author    = {Naveed Afzal and
               Yanshan Wang and
               Feichen Shen and
               Liwei Wang and
               Hongfang Liu},
  title     = {A Resource for Clinical Semantic Textual Similarity},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t004-1.3900473/f004-1.3900474/2730825-1.3901446/2731320-1.3901443},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/AfzalWSWL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/CheSLL17,
  author    = {Zhengping Che and
               Jennifer L. St. Sauver and
               Hongfang Liu and
               Yan Liu},
  title     = {Deep Learning Solutions for Classifying Patients on Opioid Use},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t003-1.3901461/f003-1.3901462/2729064-1.3901910/2717579-1.3901907},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/CheSLL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FinleyKMMLXP17,
  author    = {Gregory P. Finley and
               Benjamin C. Knoll and
               Reed McEwan and
               Genevieve B. Melton and
               Hongfang Liu and
               Hua Xu and
               Serguei V. S. Pakhomov},
  title     = {{AMICUS:} {A} Metasystem for Interoperation and Combination of {UIMA}
               Systems},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t006-1.3900376/f006-1.3900377/2728263-1.3900426/2732068-1.3900423},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/FinleyKMMLXP17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MallipeddiAKLCA17,
  author    = {Vishnu Priya Mallipeddi and
               Naveed Afzal and
               Iftikhar J. Kullo and
               Hongfang Liu and
               Rajeev Chaudhry and
               Adelaide M. Arruda{-}Olson},
  title     = {Guideline Based Recommended Therapies in {PAD} Patients Identified
               by {NLP:} {A} Quality Assessment Project},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t004-1.3900473/f004-1.3900474/2732281-1.3900943/2731884-1.3900940},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/MallipeddiAKLCA17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MoonIZL17,
  author    = {Sungrim Moon and
               Donna M. Ihrke and
               Yuqun Zeng and
               Hongfang Liu},
  title     = {Distinction between medical and non-medical usages of short forms
               in clinical narratives},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t003-1.3901461/f003-1.3901462/2731922-1.3901664/2730479-1.3901661},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/MoonIZL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NguforWMLCSK17,
  author    = {Che Ngufor and
               Matthew A. Warner and
               Dennis Murphree and
               Hongfang Liu and
               Rickey E. Carter and
               Curtis B. Storlie and
               Daryl J. Kor},
  title     = {Identification of Clinically Meaningful Plasma Transfusion Subgroups
               Using Unsupervised Random Forest Clustering},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t003-1.3901461/f003-1.3901462/2730864-1.3901655/2731988-1.3901652},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/NguforWMLCSK17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PetersonJBSL17,
  author    = {Kevin J. Peterson and
               Guoqian Jiang and
               Scott M. Brue and
               Feichen Shen and
               Hongfang Liu},
  title     = {Mining Hierarchies and Similarity Clusters from Value Set Repositories},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t003-1.3901461/f003-1.3901462/2730999-1.3901643/2729978-1.3901640},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/PetersonJBSL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Shen0WWAL17,
  author    = {Feichen Shen and
               Sijia Liu and
               Yanshan Wang and
               Liwei Wang and
               Naveed Afzal and
               Hongfang Liu},
  title     = {Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t003-1.3901461/f003-1.3901462/2724756-1.3901587/2731365-1.3901584},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/Shen0WWAL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Shen0WWAL17a,
  author    = {Feichen Shen and
               Sijia Liu and
               Yanshan Wang and
               Liwei Wang and
               Naveed Afzal and
               Hongfang Liu},
  title     = {Accelerating Rare Disease Diagnosis with Collaborative Filtering},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t004-1.3900473/f004-1.3900474/2728477-1.3900688/2730645-1.3900685},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/Shen0WWAL17a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnJMWKRL17,
  author    = {Sunghwan Sohn and
               Young J. Juhn and
               Sungrim Moon and
               Chung{-}Il Wi and
               Katherine S. King and
               Euijung Ryu and
               Hongfang Liu},
  title     = {Bayesian Prediction of Asthma Exacerbation in Children},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t004-1.3900473/f004-1.3900474/2731807-1.3900664/2731267-1.3900661},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnJMWKRL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangAWSL17,
  author    = {Yanshan Wang and
               Naveed Afzal and
               Liwei Wang and
               Feichen Shen and
               Hongfang Liu},
  title     = {Semantic Representations of Medical Terms: {A} Comparison Study of
               Word Embeddings Trained on Clinical Notes and PubMed Articles},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t004-1.3900473/f004-1.3900474/2729020-1.3900571/2730095-1.3900568},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WangAWSL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZengWS0WRLL17,
  author    = {Yuqun Zeng and
               Yanshan Wang and
               Feichen Shen and
               Sijia Liu and
               Liwei Wang and
               Majid Rastegar{-}Mojarad and
               Xusheng Liu and
               Hongfang Liu},
  title     = {Recommending education materials for diabetic questions using information
               retrieval approaches},
  booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810/t004-1.3900473/f004-1.3900474/2731980-1.3900499/2731867-1.3900496},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/ZengWS0WRLL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WangLRWSLL17,
  author    = {Yanshan Wang and
               Sijia Liu and
               Majid Rastegar{-}Mojarad and
               Liwei Wang and
               Feichen Shen and
               Fei Liu and
               Hongfang Liu},
  title     = {Dependency and {AMR} Embeddings for Drug-Drug Interaction Extraction
               from Biomedical Literature},
  booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
               Computational Biology, and Health Informatics, {BCB} 2017, Boston,
               MA, USA, August 20-23, 2017},
  pages     = {36--43},
  year      = {2017},
  crossref  = {DBLP:conf/bcb/2017},
  url       = {https://doi.org/10.1145/3107411.3107426},
  doi       = {10.1145/3107411.3107426},
  timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/WangLRWSLL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Moon0KCWSCL17,
  author    = {Sungrim Moon and
               Sijia Liu and
               Paul Kingsbury and
               David Chen and
               Yanshan Wang and
               Feichen Shen and
               Rajeev Chaudhry and
               Hongfang Liu},
  title     = {Medical concept intersection between outside medical records and consultant
               notes: {A} case study in transferred cardiovascular patients},
  booktitle = {2017 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2017, Kansas City, MO, USA, November 13-16, 2017},
  pages     = {1495--1500},
  year      = {2017},
  crossref  = {DBLP:conf/bibm/2017},
  url       = {https://doi.org/10.1109/BIBM.2017.8217883},
  doi       = {10.1109/BIBM.2017.8217883},
  timestamp = {Tue, 29 Jan 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/Moon0KCWSCL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/0002WICTWL17,
  author    = {Sijia Liu and
               Liwei Wang and
               Donna M. Ihrke and
               Vipin Chaudhary and
               Cui Tao and
               Chunhua Weng and
               Hongfang Liu},
  title     = {Correlating Lab Test Results in Clinical Notes with Structured Lab
               Data: {A} Case Study in HbA1c and Glucose},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t002-1.3521687/t002-1.3521688/a034-1.3521720/a035-1.3521717},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/0002WICTWL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/AfzalSSLKA17,
  author    = {Naveed Afzal and
               Sunghwan Sohn and
               Christopher Scott and
               Hongfang Liu and
               Iftikhar J. Kullo and
               Adelaide M. Arruda{-}Olson},
  title     = {Surveillance of Peripheral Arterial Disease Cases Using Natural Language
               Processing of Clinical Notes},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t002-1.3521687/t002-1.3521688/a014-1.3521781},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/AfzalSSLKA17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/Arruda-OlsonAPS17,
  author    = {Adelaide M. Arruda{-}Olson and
               Naveed Afzal and
               Homam Moussa Pacha and
               Ahmad Said and
               Bradley Lewis and
               Christopher Scott and
               Kent Bailey and
               Hongfang Liu and
               Iftikhar J. Kullo},
  title     = {Mortality Prognostic Model for Peripheral Arterial Disease},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a045-1.3521684/a046-1.3521681},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/Arruda-OlsonAPS17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/FinleyKLXMP17,
  author    = {Gregory P. Finley and
               Benjamin C. Knoll and
               Hongfang Liu and
               Hua Xu and
               Genevieve B. Melton and
               Serguei V. S. Pakhomov},
  title     = {Using ensembles of {NLP} engines without a common type system to improve
               abbreviation disambiguation},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a057-1.3521646/a058-1.3521643},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/FinleyKLXMP17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ShenSR0PHSSSL17,
  author    = {Feichen Shen and
               Sunghwan Sohn and
               Majid Rastegar{-}Mojarad and
               Sijia Liu and
               Joshua J. Pankratz and
               Michael Hatton and
               Nancy Sowada and
               Om Shrestha and
               Shawna Shurson and
               Hongfang Liu},
  title     = {Populating Physician Biographical Pages Based on {EMR} Data},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t005-1.3521351/t005-1.3521352/a151-1.3521359/a152-1.3521356},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/ShenSR0PHSSSL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/WangWR0SL17,
  author    = {Yanshan Wang and
               Liwei Wang and
               Majid Rastegar{-}Mojarad and
               Sijia Liu and
               Feichen Shen and
               Hongfang Liu},
  title     = {Content Analysis of Free-Text Family History},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t004-1.3521377/t004-1.3521378/a136-1.3521406/a137-1.3521403},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/WangWR0SL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ZhouLHNLS17,
  author    = {Yangmei Zhou and
               David W. Larson and
               Elizabeth B. Habermann and
               James M. Naessens and
               Hongfang Liu and
               Sunghwan Sohn},
  title     = {Prediction of Organ Space Colorectal Surgical Site Infections Using
               Prognostic Bayesian Networks},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a093-1.3521537/a094-1.3521534},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/ZhouLHNLS17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ZhouLHNLS17a,
  author    = {Yangmei Zhou and
               David W. Larson and
               Elizabeth B. Habermann and
               James M. Naessens and
               Hongfang Liu and
               Sunghwan Sohn},
  title     = {Locally Generated Bayesian Network Prediction of Colorectal Surgical
               Site Infections},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/cri/2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t004-1.3521377/t004-1.3521378/a144-1.3521382/a145-1.3521379},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/ZhouLHNLS17a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/Rastegar-Mojarad17,
  author    = {Majid Rastegar{-}Mojarad and
               Jenna K. Lovely and
               Joshua J. Pankratz and
               Sunghwan Sohn and
               Donna M. Ihrke and
               Amit Merchea and
               David W. Larson and
               Hongfang Liu},
  title     = {Using Unstructured Data to Identify Readmitted Patients},
  booktitle = {2017 {IEEE} International Conference on Healthcare Informatics, {ICHI}
               2017, Park City, UT, USA, August 23-26, 2017},
  pages     = {1--4},
  year      = {2017},
  crossref  = {DBLP:conf/ichi/2017},
  url       = {https://doi.org/10.1109/ICHI.2017.99},
  doi       = {10.1109/ICHI.2017.99},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/Rastegar-Mojarad17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/LiuWHSWHL17,
  author    = {Sijia Liu and
               Yanshan Wang and
               Na Hong and
               Feichen Shen and
               Stephen T. Wu and
               William R. Hersh and
               Hongfang Liu},
  title     = {On Mapping Textual Queries to a Common Data Model},
  booktitle = {2017 {IEEE} International Conference on Healthcare Informatics, {ICHI}
               2017, Park City, UT, USA, August 23-26, 2017},
  pages     = {21--25},
  year      = {2017},
  crossref  = {DBLP:conf/ichi/2017},
  url       = {https://doi.org/10.1109/ICHI.2017.63},
  doi       = {10.1109/ICHI.2017.63},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/LiuWHSWHL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ShenWL17,
  author    = {Feichen Shen and
               Liwei Wang and
               Hongfang Liu},
  title     = {Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology},
  booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
               of the 16th World Congress on Medical and Health Informatics, Hangzhou,
               China, 21-25 August 2017.},
  pages     = {581--585},
  year      = {2017},
  crossref  = {DBLP:conf/medinfo/2017},
  url       = {https://doi.org/10.3233/978-1-61499-830-3-581},
  doi       = {10.3233/978-1-61499-830-3-581},
  timestamp = {Tue, 09 Jan 2018 14:56:24 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/ShenWL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WuWW0L17,
  author    = {Stephen T. Wu and
               Andrew Wen and
               Yanshan Wang and
               Sijia Liu and
               Hongfang Liu},
  title     = {Aligned-Layer Text Search in Clinical Notes},
  booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
               of the 16th World Congress on Medical and Health Informatics, Hangzhou,
               China, 21-25 August 2017.},
  pages     = {629--633},
  year      = {2017},
  crossref  = {DBLP:conf/medinfo/2017},
  url       = {https://doi.org/10.3233/978-1-61499-830-3-629},
  doi       = {10.3233/978-1-61499-830-3-629},
  timestamp = {Tue, 09 Jan 2018 14:56:24 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/WuWW0L17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SohnWJL17,
  author    = {Sunghwan Sohn and
               Chung{-}Il Wi and
               Young J. Juhn and
               Hongfang Liu},
  title     = {Analysis of Clinical Variations in Asthma Care Documented in Electronic
               Health Records Between Staff and Resident Physicians},
  booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
               of the 16th World Congress on Medical and Health Informatics, Hangzhou,
               China, 21-25 August 2017.},
  pages     = {1170--1174},
  year      = {2017},
  crossref  = {DBLP:conf/medinfo/2017},
  url       = {https://doi.org/10.3233/978-1-61499-830-3-1170},
  doi       = {10.3233/978-1-61499-830-3-1170},
  timestamp = {Tue, 09 Jan 2018 14:56:24 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/SohnWJL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ShenWL17a,
  author    = {Feichen Shen and
               Liwei Wang and
               Hongfang Liu},
  title     = {Using Human Phenotype Ontology for Phenotypic Analysis of Clinical
               Notes},
  booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
               of the 16th World Congress on Medical and Health Informatics, Hangzhou,
               China, 21-25 August 2017.},
  pages     = {1285},
  year      = {2017},
  crossref  = {DBLP:conf/medinfo/2017},
  url       = {https://doi.org/10.3233/978-1-61499-830-3-1285},
  doi       = {10.3233/978-1-61499-830-3-1285},
  timestamp = {Tue, 09 Jan 2018 14:56:24 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/ShenWL17a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LiuSCL17,
  author    = {Sijia Liu and
               Feichen Shen and
               Vipin Chaudhary and
               Hongfang Liu},
  title     = {MayoNLP at SemEval 2017 Task 10: Word Embedding Distance Pattern for
               Keyphrase Classification in Scientific Publications},
  booktitle = {Proceedings of the 11th International Workshop on Semantic Evaluation,
               SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
  pages     = {956--960},
  year      = {2017},
  crossref  = {DBLP:conf/semeval/2017},
  url       = {https://doi.org/10.18653/v1/S17-2166},
  doi       = {10.18653/v1/S17-2166},
  timestamp = {Thu, 14 Dec 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/LiuSCL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WangERL17,
  author    = {Yanshan Wang and
               Ravikumar Komandur Elayavilli and
               Majid Rastegar{-}Mojarad and
               Hongfang Liu},
  title     = {Leveraging both Structured and Unstructured Data for Precision Information
               Retrieval},
  booktitle = {Proceedings of The Twenty-Sixth Text REtrieval Conference, {TREC}
               2017, Gaithersburg, Maryland, USA, November 15-17, 2017},
  year      = {2017},
  crossref  = {DBLP:conf/trec/2017},
  url       = {https://trec.nist.gov/pubs/trec26/papers/MayoNLPTeam\_PM.pdf},
  timestamp = {Wed, 18 Jul 2018 08:01:59 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/WangERL17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OellrichCGRSBBG16,
  author    = {Anika Oellrich and
               Nigel Collier and
               Tudor Groza and
               Dietrich Rebholz{-}Schuhmann and
               Nigam Shah and
               Olivier Bodenreider and
               Mary Regina Boland and
               Ivo I. Georgiev and
               Hongfang Liu and
               Kevin M. Livingston and
               Augustin Luna and
               Ann{-}Marie Mallon and
               Prashanti Manda and
               Peter N. Robinson and
               Gabriella Rustici and
               Michelle Simon and
               Liqin Wang and
               Rainer Winnenburg and
               Michel Dumontier},
  title     = {The digital revolution in phenotyping},
  journal   = {Briefings in Bioinformatics},
  volume    = {17},
  number    = {5},
  pages     = {819--830},
  year      = {2016},
  url       = {https://doi.org/10.1093/bib/bbv083},
  doi       = {10.1093/bib/bbv083},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bib/OellrichCGRSBBG16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Rastegar-Mojarad16,
  author    = {Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Hongfang Liu},
  title     = {BELTracker: evidence sentence retrieval for {BEL} statements},
  journal   = {Database},
  volume    = {2016},
  year      = {2016},
  url       = {https://doi.org/10.1093/database/baw079},
  doi       = {10.1093/database/baw079},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/Rastegar-Mojarad16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ElayavilliWLKL16,
  author    = {Ravikumar Komandur Elayavilli and
               Kavishwar B. Wagholikar and
               Dingcheng Li and
               Jean{-}Pierre A. Kocher and
               Hongfang Liu},
  title     = {Erratum to: Text mining facilitates database curation - extraction
               of mutation-disease associations from Bio-medical literature},
  journal   = {{BMC} Bioinformatics},
  volume    = {17},
  pages     = {162},
  year      = {2016},
  url       = {https://doi.org/10.1186/s12859-016-0974-0},
  doi       = {10.1186/s12859-016-0974-0},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/ElayavilliWLKL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/OnikiZBLCPSMKCH16,
  author    = {Thomas A. Oniki and
               Ning Zhuo and
               Calvin E. Beebe and
               Hongfang Liu and
               Joseph F. Coyle and
               Craig G. Parker and
               Harold R. Solbrig and
               Kyle Marchant and
               Vinod Kaggal and
               Christopher G. Chute and
               Stanley M. Huff},
  title     = {Clinical element models in the SHARPn consortium},
  journal   = {{JAMIA}},
  volume    = {23},
  number    = {2},
  pages     = {248--256},
  year      = {2016},
  url       = {https://doi.org/10.1093/jamia/ocv134},
  doi       = {10.1093/jamia/ocv134},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/OnikiZBLCPSMKCH16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HongLYXLJ16,
  author    = {Na Hong and
               Dingcheng Li and
               Yue Yu and
               Qiongying Xiu and
               Hongfang Liu and
               Guoqian Jiang},
  title     = {A computational framework for converting textual clinical diagnostic
               criteria into the quality data model},
  journal   = {Journal of Biomedical Informatics},
  volume    = {63},
  pages     = {11--21},
  year      = {2016},
  url       = {https://doi.org/10.1016/j.jbi.2016.07.016},
  doi       = {10.1016/j.jbi.2016.07.016},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/HongLYXLJ16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangWLML16,
  author    = {Yanshan Wang and
               Stephen T. Wu and
               Dingcheng Li and
               Saeed Mehrabi and
               Hongfang Liu},
  title     = {A Part-Of-Speech term weighting scheme for biomedical information
               retrieval},
  journal   = {Journal of Biomedical Informatics},
  volume    = {63},
  pages     = {379--389},
  year      = {2016},
  url       = {https://doi.org/10.1016/j.jbi.2016.08.026},
  doi       = {10.1016/j.jbi.2016.08.026},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/WangWLML16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiCWLH16,
  author    = {Mei Li and
               Yuying Cao and
               Liwei Wang and
               Hongfang Liu and
               Yongqun He},
  title     = {Ontology-Based Analysis of Adverse Drug Reactions Associated with
               Anti-infection Drugs in China},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2499661-1.3363753/2500010-1.3363748},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiCWLH16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiLRWLCTL16,
  author    = {Dingcheng Li and
               Sijia Liu and
               Majid Rastegar{-}Mojarad and
               Yanshan Wang and
               Xiaodi Li and
               Vipin Chaudhary and
               Terry M. Therneau and
               Hongfang Liu},
  title     = {A Topic-modeling Based Framework for Drug-drug Interaction Classification
               from Biomedical Text},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2499084-1.3364777/2499757-1.3364772},
  timestamp = {Thu, 14 Dec 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiLRWLCTL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiLRWLCTL16a,
  author    = {Dingcheng Li and
               Sijia Liu and
               Majid Rastegar{-}Mojarad and
               Yanshan Wang and
               Xiaodi Li and
               Vipin Chaudhary and
               Terry M. Therneau and
               Hongfang Liu},
  title     = {Drug-drug Interaction Detection with {A} Topic-modeling Based Framework
               Augmented with Distant-supervision},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2496521-1.3363763/2499954-1.3363758},
  timestamp = {Thu, 14 Dec 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiLRWLCTL16a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MeystreLXAWPSWZ16,
  author    = {St{\'{e}}phane M. Meystre and
               Hongfang Liu and
               Rong Xu and
               Sivaram Arabandi and
               Kavishwar B. Wagholikar and
               Jon Patrick and
               Guergana K. Savova and
               Chunhua Weng and
               Pierre Zweigenbaum and
               Dina Demner{-}Fushman and
               {\"{O}}zlem Uzuner and
               Hua Xu},
  title     = {Natural Language Processing Working Group Pre-Symposium: Graduate
               Student Consortium and 'Hackathon'},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t009-1.3369175/f009-1.3369176/2499034-1.3369215/2499356-1.3369212},
  timestamp = {Tue, 20 Mar 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/MeystreLXAWPSWZ16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PetersonJBL16,
  author    = {Kevin J. Peterson and
               Guoqian Jiang and
               Scott M. Brue and
               Hongfang Liu},
  title     = {Leveraging Terminology Services for Extract-Transform-Load Processes:
               {A} User-Centered Approach},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2497953-1.3364670/2497334-1.3364665},
  timestamp = {Thu, 18 Jan 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/PetersonJBL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnWWKRAJL16,
  author    = {Sunghwan Sohn and
               Yanshan Wang and
               Chung{-}Il Wi and
               Elizabeth A. Krusemark and
               Euijung Ryu and
               Mir H. Ali and
               Young J. Juhn and
               Hongfang Liu},
  title     = {Asthma Ascertainment {NLP} System Portability across Institutions},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2496288-1.3363185/2498452-1.3363180},
  timestamp = {Sun, 28 May 2017 18:22:36 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnWWKRAJL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangLRL16,
  author    = {Liwei Wang and
               Dingcheng Li and
               Majid Rastegar{-}Mojarad and
               Hongfang Liu},
  title     = {Discovering Associations between Problem List and Practice Setting},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2500084-1.3363067/2499921-1.3363062},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WangLRL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangWLL16,
  author    = {Yanshan Wang and
               Stephen T. Wu and
               Dingcheng Li and
               Hongfang Liu},
  title     = {A Part-Of-Speech Weighting Scheme for Clinical Information Retrieval},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2498548-1.3363057/2498457-1.3363052},
  timestamp = {Sun, 28 May 2017 18:22:36 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WangWLL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuWSWKLJ16,
  author    = {Stephen T. Wu and
               Yanshan Wang and
               Sunghwan Sohn and
               Chung{-}Il Wi and
               Elizabeth A. Krusemark and
               Hongfang Liu and
               Young J. Juhn},
  title     = {Probabilistic Population-level Modeling of Disease Event Timelines},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t001-1.3365273/f001-1.3365274/2492306-1.3365303/2500419-1.3365298},
  timestamp = {Sun, 28 May 2017 18:22:36 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WuWSWKLJ16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZengWWLL16,
  author    = {Yuqun Zeng and
               Liwei Wang and
               Yanshan Wang and
               Dingcheng Li and
               Hongfang Liu},
  title     = {Answering patients' questions using expert-vetted online resources:
               {A} case study of diabetes},
  booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/amia/2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2500170-1.3362941/2500037-1.3362936},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/ZengWWLL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Rastegar-Mojarad16,
  author    = {Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Liwei Wang and
               Rashmi Prasad and
               Hongfang Liu},
  title     = {Prioritizing Adverse Drug Reaction and Drug Repositioning Candidates
               Generated by Literature-Based Discovery},
  booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
               Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
               WA, USA, October 2-5, 2016},
  pages     = {289--296},
  year      = {2016},
  crossref  = {DBLP:conf/bcb/2016},
  url       = {https://doi.org/10.1145/2975167.2975197},
  doi       = {10.1145/2975167.2975197},
  timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/Rastegar-Mojarad16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/AfzalSALKA16,
  author    = {Naveed Afzal and
               Sunghwan Sohn and
               Sara Abram and
               Hongfang Liu and
               Iftikhar J. Kullo and
               Adelaide M. Arruda{-}Olson},
  title     = {Identifying peripheral arterial disease cases using natural language
               processing of clinical notes},
  booktitle = {2016 {IEEE-EMBS} International Conference on Biomedical and Health
               Informatics, {BHI} 2016, Las Vegas, NV, USA, February 24-27, 2016},
  pages     = {126--131},
  year      = {2016},
  crossref  = {DBLP:conf/bhi/2016},
  url       = {https://doi.org/10.1109/BHI.2016.7455851},
  doi       = {10.1109/BHI.2016.7455851},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bhi/AfzalSALKA16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/KnollMLXP16,
  author    = {Benjamin C. Knoll and
               Genevieve B. Melton and
               Hongfang Liu and
               Hua Xu and
               Serguei V. S. Pakhomov},
  title     = {Using synthetic clinical data to train an HMM-based {POS} tagger},
  booktitle = {2016 {IEEE-EMBS} International Conference on Biomedical and Health
               Informatics, {BHI} 2016, Las Vegas, NV, USA, February 24-27, 2016},
  pages     = {252--255},
  year      = {2016},
  crossref  = {DBLP:conf/bhi/2016},
  url       = {https://doi.org/10.1109/BHI.2016.7455882},
  doi       = {10.1109/BHI.2016.7455882},
  timestamp = {Tue, 20 Mar 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bhi/KnollMLXP16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZengLWLW16,
  author    = {Yuqun Zeng and
               Xusheng Liu and
               Liwei Wang and
               Hongfang Liu and
               Yanshan Wang},
  title     = {Answering diabetic patients' questions using expert-vetted online
               resources: {A} case study},
  booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2016, Shenzhen, China, December 15-18, 2016},
  pages     = {525--528},
  year      = {2016},
  crossref  = {DBLP:conf/bibm/2016},
  url       = {https://doi.org/10.1109/BIBM.2016.7822575},
  doi       = {10.1109/BIBM.2016.7822575},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/ZengLWLW16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/WangWL16,
  author    = {Yanshan Wang and
               Stephen T. Wu and
               Hongfang Liu},
  title     = {MayoNLPTeam at the 2016 {CLEF} eHealth Information Retrieval Task
               1},
  booktitle = {Working Notes of {CLEF} 2016 - Conference and Labs of the Evaluation
               forum, {\'{E}}vora, Portugal, 5-8 September, 2016.},
  pages     = {198--204},
  year      = {2016},
  crossref  = {DBLP:conf/clef/2016w},
  url       = {http://ceur-ws.org/Vol-1609/16090198.pdf},
  timestamp = {Mon, 29 Aug 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/clef/WangWL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/LiuWMLL16,
  author    = {Sijia Liu and
               Yanshan Wang and
               Saeed Mehrabi and
               Dingcheng Li and
               Hongfang Liu},
  title     = {MayoBMI at ImageCLEF 2016 Handwritten Document Retrieval Task},
  booktitle = {Working Notes of {CLEF} 2016 - Conference and Labs of the Evaluation
               forum, {\'{E}}vora, Portugal, 5-8 September, 2016.},
  pages     = {347--355},
  year      = {2016},
  crossref  = {DBLP:conf/clef/2016w},
  url       = {http://ceur-ws.org/Vol-1609/16090347.pdf},
  timestamp = {Thu, 14 Dec 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/clef/LiuWMLL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/0002LCL16,
  author    = {Sijia Liu and
               Hongfang Liu and
               Vipin Chaudhary and
               Dingcheng Li},
  title     = {An Infinite Mixture Model for Coreference Resolution in Clinical Notes},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
               CA, USA, March 21-24, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/cri/2016},
  url       = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t006-1.3012375/f006-1.3012376/a228-1.3012395/a230-1.3012390},
  timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/0002LCL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/0003WIL16,
  author    = {Saeed Mehrabi and
               Yanshan Wang and
               Donna M. Ihrke and
               Hongfang Liu},
  title     = {Exploring Gaps of Family History Documentation in {EHR} for Precision
               Medicine - {A} Case Study of Familial Hypercholesterolemia Ascertainment},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
               CA, USA, March 21-24, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/cri/2016},
  url       = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t003-1.3012832/f003-1.3012833/a030-1.3012900/a032-1.3012895},
  timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/0003WIL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/SohnJWRL16,
  author    = {Sunghwan Sohn and
               Young J. Juhn and
               Chung{-}Il Wi and
               Euijung Ryu and
               Hongfang Liu},
  title     = {Ascertaining Asthma Predictive Index through Natural Language Processing},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
               CA, USA, March 21-24, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/cri/2016},
  url       = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t005-1.3012400/f005-1.3012401/a211-1.3012441/a213-1.3012436},
  timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/SohnJWRL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/WangLWL16,
  author    = {Yanshan Wang and
               Dingcheng Li and
               Stephen T. Wu and
               Hongfang Liu},
  title     = {{POS-MRF:} {A} Part-Of-Speech Weighted Markov Random Field Model for
               Clinical Information Retrieval},
  booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
               CA, USA, March 21-24, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/cri/2016},
  url       = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t005-1.3012400/f005-1.3012401/a219-1.3012421/a221-1.3012416},
  timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/WangLWL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ElayavilliRL16,
  author    = {Ravikumar Komandur Elayavilli and
               Majid Rastegar{-}Mojarad and
               Hongfang Liu},
  title     = {MutD - {A} PubMed Scale Resource for Protein Mutation-Disease Relations
               through Bio-Medical Literature Mining},
  booktitle = {Proceedings of the Joint International Conference on Biological Ontology
               and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016.},
  year      = {2016},
  crossref  = {DBLP:conf/icbo/2016},
  url       = {http://ceur-ws.org/Vol-1747/BT203\_ICBO2016.pdf},
  timestamp = {Tue, 07 Feb 2017 15:23:44 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/icbo/ElayavilliRL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/LiuCWL16,
  author    = {Sijia Liu and
               Vipin Chaudhary and
               Liwei Wang and
               Hongfang Liu},
  title     = {LabLinker: Finding Links of Laboratory Test Results between Structured
               Records and Clinical Notes},
  booktitle = {2016 {IEEE} International Conference on Healthcare Informatics, {ICHI}
               2016, Chicago, IL, USA, October 4-7, 2016},
  pages     = {302},
  year      = {2016},
  crossref  = {DBLP:conf/ichi/2016},
  url       = {https://doi.org/10.1109/ICHI.2016.44},
  doi       = {10.1109/ICHI.2016.44},
  timestamp = {Thu, 14 Dec 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/LiuCWL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/WuTYWBHL16,
  author    = {Stephen T. Wu and
               Tamara Timmons and
               Amy Yates and
               Meikun Wang and
               Steven Bedrick and
               William R. Hersh and
               Hongfang Liu},
  title     = {On Developing Resources for Patient-level Information Retrieval},
  booktitle = {Proceedings of the Tenth International Conference on Language Resources
               and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016.},
  year      = {2016},
  crossref  = {DBLP:conf/lrec/2016},
  url       = {http://www.lrec-conf.org/proceedings/lrec2016/summaries/919.html},
  timestamp = {Tue, 30 Aug 2016 18:49:47 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/lrec/WuTYWBHL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/WuWSLJ16,
  author    = {Stephen T. Wu and
               Chung{-}Il Wi and
               Sunghwan Sohn and
               Hongfang Liu and
               Young J. Juhn},
  title     = {Staggered NLP-assisted refinement for Clinical Annotations of Chronic
               Disease Events},
  booktitle = {Proceedings of the Tenth International Conference on Language Resources
               and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016.},
  year      = {2016},
  crossref  = {DBLP:conf/lrec/2016},
  url       = {http://www.lrec-conf.org/proceedings/lrec2016/summaries/589.html},
  timestamp = {Tue, 30 Aug 2016 18:49:47 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/lrec/WuWSLJ16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/AfzalWL16,
  author    = {Naveed Afzal and
               Yanshan Wang and
               Hongfang Liu},
  title     = {MayoNLP at SemEval-2016 Task 1: Semantic Textual Similarity based
               on Lexical Semantic Net and Deep Learning Semantic Model},
  booktitle = {Proceedings of the 10th International Workshop on Semantic Evaluation,
               SemEval@NAACL-HLT 2016, San Diego, CA, USA, June 16-17, 2016},
  pages     = {674--679},
  year      = {2016},
  crossref  = {DBLP:conf/semeval/2016},
  url       = {http://aclweb.org/anthology/S/S16/S16-1103.pdf},
  timestamp = {Fri, 30 Sep 2016 13:50:31 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/AfzalWL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WangRELL16,
  author    = {Yanshan Wang and
               Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Sijia Liu and
               Hongfang Liu},
  title     = {An Ensemble Model of Clinical Information Extraction and Information
               Retrieval for Clinical Decision Support},
  booktitle = {Proceedings of The Twenty-Fifth Text REtrieval Conference, {TREC}
               2016, Gaithersburg, Maryland, USA, November 15-18, 2016},
  year      = {2016},
  crossref  = {DBLP:conf/trec/2016},
  url       = {http://trec.nist.gov/pubs/trec25/papers/MayoNLPTeam-CL.pdf},
  timestamp = {Thu, 14 Dec 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/trec/WangRELL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/OverbyRL16,
  author    = {Casey Lynnette Overby and
               Louiqa Raschid and
               Hongfang Liu},
  title     = {Exploiting {HPO} to Predict a Ranked List of Phenotype Categories
               for LiverTox Case Reports},
  booktitle = {Data Management and Analytics for Medicine and Healthcare - Second
               International Workshop, {DMAH} 2016, Held at {VLDB} 2016, New Delhi,
               India, September 9, 2016, Revised Selected Papers},
  pages     = {3--9},
  year      = {2016},
  crossref  = {DBLP:conf/vldb/2016dmah},
  url       = {https://doi.org/10.1007/978-3-319-57741-8\_1},
  doi       = {10.1007/978-3-319-57741-8\_1},
  timestamp = {Thu, 25 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/vldb/OverbyRL16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangL16c,
  author    = {Yanshan Wang and
               Hongfang Liu},
  title     = {MatLM: a Matrix Formulation for Probabilistic Language Models},
  journal   = {CoRR},
  volume    = {abs/1610.00735},
  year      = {2016},
  url       = {http://arxiv.org/abs/1610.00735},
  archivePrefix = {arXiv},
  eprint    = {1610.00735},
  timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/WangL16c},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangLCZ15,
  author    = {Liwei Wang and
               Hongfang Liu and
               Christopher G. Chute and
               Qian Zhu},
  title     = {Cancer based pharmacogenomics network supported with scientific evidences:
               from the view of drug repurposing},
  journal   = {BioData Mining},
  volume    = {8},
  pages     = {9},
  year      = {2015},
  url       = {https://doi.org/10.1186/s13040-015-0042-8},
  doi       = {10.1186/s13040-015-0042-8},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodatamining/WangLCZ15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiOLL15,
  author    = {Dingcheng Li and
               Janet Okamoto and
               Hongfang Liu and
               Scott Leischow},
  title     = {A bibliometric analysis on tobacco regulation investigators},
  journal   = {BioData Mining},
  volume    = {8},
  pages     = {11},
  year      = {2015},
  url       = {https://doi.org/10.1186/s13040-015-0043-7},
  doi       = {10.1186/s13040-015-0043-7},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodatamining/LiOLL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JiangLSC15,
  author    = {Guoqian Jiang and
               Hongfang Liu and
               Harold R. Solbrig and
               Christopher G. Chute},
  title     = {Mining severe drug-drug interaction adverse events using Semantic
               Web technologies: a case study},
  journal   = {BioData Mining},
  volume    = {8},
  pages     = {12},
  year      = {2015},
  url       = {https://doi.org/10.1186/s13040-015-0044-6},
  doi       = {10.1186/s13040-015-0044-6},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodatamining/JiangLSC15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangZL15,
  author    = {Yuji Zhang and
               Qian Zhu and
               Hongfang Liu},
  title     = {Next generation informatics for big data in precision medicine era},
  journal   = {BioData Mining},
  volume    = {8},
  pages     = {34},
  year      = {2015},
  url       = {https://doi.org/10.1186/s13040-015-0064-2},
  doi       = {10.1186/s13040-015-0064-2},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodatamining/ZhangZL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RavikumarWLKL15,
  author    = {Ravikumar Komandur Elayavilli and
               Kavishwar B. Wagholikar and
               Dingcheng Li and
               Jean{-}Pierre A. Kocher and
               Hongfang Liu},
  title     = {Text mining facilitates database curation - extraction of mutation-disease
               associations from Bio-medical literature},
  journal   = {{BMC} Bioinformatics},
  volume    = {16},
  pages     = {185:1--185:15},
  year      = {2015},
  url       = {https://doi.org/10.1186/s12859-015-0609-x},
  doi       = {10.1186/s12859-015-0609-x},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/RavikumarWLKL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XuACLPDLSXRJLJW15,
  author    = {Hua Xu and
               Melinda C. Aldrich and
               Qingxia Chen and
               Hongfang Liu and
               Neeraja B. Peterson and
               Qi Dai and
               Mia A. Levy and
               Anushi Shah and
               Han Xue and
               Xiaoyang Ruan and
               Min Jiang and
               Ying Li and
               Jamii St Julien and
               Jeremy L. Warner and
               Carol Friedman and
               Dan M. Roden and
               Joshua C. Denny},
  title     = {Validating drug repurposing signals using electronic health records:
               a case study of metformin associated with reduced cancer mortality},
  journal   = {{JAMIA}},
  volume    = {22},
  number    = {1},
  pages     = {179--191},
  year      = {2015},
  url       = {https://doi.org/10.1136/amiajnl-2014-002649},
  doi       = {10.1136/amiajnl-2014-002649},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/XuACLPDLSXRJLJW15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MehrabiKSRSKBDS15,
  author    = {Saeed Mehrabi and
               Anand Krishnan and
               Sunghwan Sohn and
               Alexandra M. Roch and
               Heidi Schmidt and
               Joe Kesterson and
               Chris Beesley and
               Paul R. Dexter and
               C. Max Schmidt and
               Hongfang Liu and
               Mathew J. Palakal},
  title     = {{DEEPEN:} {A} negation detection system for clinical text incorporating
               dependency relation into NegEx},
  journal   = {Journal of Biomedical Informatics},
  volume    = {54},
  pages     = {213--219},
  year      = {2015},
  url       = {https://doi.org/10.1016/j.jbi.2015.02.010},
  doi       = {10.1016/j.jbi.2015.02.010},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/MehrabiKSRSKBDS15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhengVLWSUGBARP15,
  author    = {Kai Zheng and
               V. G. Vinod Vydiswaran and
               Yang Liu and
               Yue Wang and
               Amber Stubbs and
               {\"{O}}zlem Uzuner and
               Anupama E. Gururaj and
               Samuel Bayer and
               John S. Aberdeen and
               Anna Rumshisky and
               Serguei Pakhomov and
               Hongfang Liu and
               Hua Xu},
  title     = {Ease of adoption of clinical natural language processing software:
               An evaluation of five systems},
  journal   = {Journal of Biomedical Informatics},
  volume    = {58},
  pages     = {S189--S196},
  year      = {2015},
  url       = {https://doi.org/10.1016/j.jbi.2015.07.008},
  doi       = {10.1016/j.jbi.2015.07.008},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/ZhengVLWSUGBARP15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/KrallingerRL15,
  author    = {Martin Krallinger and
               Obdulia Rabal and
               Florian Leitner and
               Miguel Vazquez and
               David Salgado and
               Zhiyong Lu and
               Robert Leaman and
               Yanan Lu and
               Donghong Ji and
               Daniel M. Lowe and
               Roger A. Sayle and
               Riza Theresa Batista{-}Navarro and
               Rafal Rak and
               Torsten Huber and
               Tim Rockt{\"{a}}schel and
               S{\'{e}}rgio Matos and
               David Campos and
               Buzhou Tang and
               Hua Xu and
               Tsendsuren Munkhdalai and
               Keun Ho Ryu and
               S. V. Ramanan and
               P. Senthil Nathan and
               Slavko Zitnik and
               Marko Bajec and
               Lutz Weber and
               Matthias Irmer and
               Saber A. Akhondi and
               Jan A. Kors and
               Shuo Xu and
               Xin An and
               Utpal Kumar Sikdar and
               Asif Ekbal and
               Masaharu Yoshioka and
               Thaer M. Dieb and
               Miji Choi and
               Karin Verspoor and
               Madian Khabsa and
               C. Lee Giles and
               Hongfang Liu and
               Ravikumar Komandur Elayavilli and
               Andre Lamurias and
               Francisco M. Couto and
               Hong{-}Jie Dai and
               Richard Tzong{-}Han Tsai and
               Caglar Ata and
               Tolga Can and
               Anabel Usie and
               Rui Alves and
               Isabel Segura{-}Bedmar and
               Paloma Mart{\'{\i}}nez and
               Julen Oyarzabal and
               Alfonso Valencia},
  title     = {The {CHEMDNER} corpus of chemicals and drugs and its annotation principles},
  journal   = {J. Cheminformatics},
  volume    = {7},
  number    = {{S-1}},
  pages     = {S2},
  year      = {2015},
  url       = {https://doi.org/10.1186/1758-2946-7-S1-S2},
  doi       = {10.1186/1758-2946-7-S1-S2},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jcheminf/KrallingerRL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiMYL15,
  author    = {Dingcheng Li and
               Saeed Mehrabi and
               Yue Yu and
               Hongfang Liu},
  title     = {A Deep Learning Framework for Improving Medical Information Retrieval},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248964-1.2744974/2249166-1.2744971},
  timestamp = {Thu, 09 Mar 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiMYL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MacLaughlinEWSL15,
  author    = {Kathy L. MacLaughlin and
               Ravikumar Komandur Elayavilli and
               Kavishwar B. Wagholikar and
               Marianne R. Scheitel and
               Hongfang Liu and
               Rajeev Chaudhry},
  title     = {Evaluation of the accuracy of {CDS} for cervical cancer screening
               and surveillance},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248899-1.2744920/2249326-1.2744917},
  timestamp = {Thu, 29 Sep 2016 14:58:07 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/MacLaughlinEWSL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MehrabiSKL15,
  author    = {Saeed Mehrabi and
               Mayya S. Safarova and
               Iftikhar J. Kullo and
               Hongfang Liu},
  title     = {Exploring Gaps of Family History Documentation in {EHR} for Precision
               Medicine - {A} Case Study of Familial Hypercholesterolemia Ascertainment},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248802-1.2744858/2249228-1.2744855},
  timestamp = {Thu, 09 Mar 2017 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/MehrabiSKL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Rastegar-Mojarad15,
  author    = {Majid Rastegar{-}Mojarad and
               Hongfang Liu and
               Priya Nambisan},
  title     = {Social Media use for Drug Repurposing: Understanding the consumer
               perspective},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2237306-1.2744688/2248682-1.2744685},
  timestamp = {Thu, 29 Sep 2016 14:58:07 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/Rastegar-Mojarad15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RavikumarCMPSPH15,
  author    = {K. E. Ravikumar and
               Rajeev Chaudhry and
               James J. Masanz and
               Joshua J. Pankratz and
               Jane L. Shellum and
               Steve G. Peters and
               Ronald A. Hankey and
               Daniel J. Cronk and
               Jennifer J. Boysen and
               Kristin Pavek and
               Robert Roden and
               Hongfang Liu},
  title     = {Natural Language Processing facilitates delivery of individualized
               recommendations at the point of care},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2242603-1.2746119/2248843-1.2746116},
  timestamp = {Thu, 29 Sep 2016 14:58:07 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/RavikumarCMPSPH15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RavikumarCMPSPH15a,
  author    = {K. E. Ravikumar and
               Rajeev Chaudhry and
               James J. Masanz and
               Joshua J. Pankratz and
               Jane L. Shellum and
               Steve G. Peters and
               Ronald A. Hankey and
               Daniel J. Cronk and
               Jennifer J. Boysen and
               Kristin Pavek and
               Robert Roden and
               Hongfang Liu},
  title     = {Natural Language Processing facilitates delivery of individualized
               recommendations at the point of care},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248293-1.2745094/2249100-1.2745091},
  timestamp = {Thu, 29 Sep 2016 14:58:07 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/RavikumarCMPSPH15a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ScheitelLSHPC15,
  author    = {Marianne R. Scheitel and
               Hongfang Liu and
               Jane L. Shellum and
               Ronald A. Hankey and
               Steve G. Peters and
               Rajeev Chaudhry},
  title     = {Automating risk score calculations and care recommendations by an
               {EMR} agnostic solution and potential time saving for providers},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248590-1.2744616/2245966-1.2744613},
  timestamp = {Fri, 30 Sep 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/ScheitelLSHPC15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnRNHLL15,
  author    = {Sunghwan Sohn and
               Majid Rastegar{-}Mojarad and
               James M. Naessens and
               Elizabeth B. Habermann and
               David W. Larson and
               Hongfang Liu},
  title     = {Detection of Colorectal Surgical Site Infections Using Bayesian Network
               and Natural Language Processing},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2246467-1.2745993/2247184-1.2745990},
  timestamp = {Thu, 29 Sep 2016 14:58:07 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnRNHLL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnRNHLL15a,
  author    = {Sunghwan Sohn and
               Majid Rastegar{-}Mojarad and
               James M. Naessens and
               Elizabeth B. Habermann and
               David W. Larson and
               Hongfang Liu},
  title     = {Prediction of Colorectal Surgical Site Infections Using Risk Factors},
  booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  year      = {2015},
  crossref  = {DBLP:conf/amia/2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248243-1.2744538/2247308-1.2744535},
  timestamp = {Thu, 29 Sep 2016 14:58:07 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnRNHLL15a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiREWMYSLAL15,
  author    = {Dingcheng Li and
               Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Yanshan Wang and
               Saeed Mehrabi and
               Yue Yu and
               Sunghwan Sohn and
               Yanpeng Li and
               Naveed Afzal and
               Hongfang Liu},
  title     = {A frequency-filtering strategy of obtaining PHI-free sentences from
               clinical data repository},
  booktitle = {Proceedings of the 6th {ACM} Conference on Bioinformatics, Computational
               Biology and Health Informatics, {BCB} 2015, Atlanta, GA, USA, September
               9-12, 2015},
  pages     = {315--324},
  year      = {2015},
  crossref  = {DBLP:conf/bcb/2015},
  url       = {https://doi.org/10.1145/2808719.2808752},
  doi       = {10.1145/2808719.2808752},
  timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/LiREWMYSLAL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Rastegar-Mojarad15,
  author    = {Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Dingcheng Li and
               Rashmi Prasad and
               Hongfang Liu},
  title     = {A new method for prioritizing drug repositioning candidates extracted
               by literature-based discovery},
  booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
  pages     = {669--674},
  year      = {2015},
  crossref  = {DBLP:conf/bibm/2015},
  url       = {https://doi.org/10.1109/BIBM.2015.7359766},
  doi       = {10.1109/BIBM.2015.7359766},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/Rastegar-Mojarad15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ShenLSLL15,
  author    = {Feichen Shen and
               Hongfang Liu and
               Sunghwan Sohn and
               David W. Larson and
               Yugyung Lee},
  title     = {BmQGen: Biomedical query generator for knowledge discovery},
  booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
  pages     = {1092--1097},
  year      = {2015},
  crossref  = {DBLP:conf/bibm/2015},
  url       = {https://doi.org/10.1109/BIBM.2015.7359833},
  doi       = {10.1109/BIBM.2015.7359833},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/ShenLSLL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/HongLYLCJ15,
  author    = {Na Hong and
               Dingcheng Li and
               Yue Yu and
               Hongfang Liu and
               Christopher G. Chute and
               Guoqian Jiang},
  title     = {Representing Clinical Diagnostic Criteria in Quality Data Model Using
               Natural Language Processing},
  booktitle = {Proceedings of the Workshop on Biomedical Natural Language Processing,
               BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015},
  pages     = {177--182},
  year      = {2015},
  crossref  = {DBLP:conf/bionlp/2015},
  url       = {https://doi.org/10.18653/v1/W15-3823},
  doi       = {10.18653/v1/W15-3823},
  timestamp = {Mon, 21 Aug 2017 18:58:14 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/HongLYLCJ15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/MehrabiSLPTSLP15,
  author    = {Saeed Mehrabi and
               Sunghwan Sohn and
               Dingcheng Li and
               Joshua J. Pankratz and
               Terry M. Therneau and
               Jennifer L. St. Sauver and
               Hongfang Liu and
               Mathew J. Palakal},
  title     = {Temporal Pattern and Association Discovery of Diagnosis Codes Using
               Deep Learning},
  booktitle = {2015 International Conference on Healthcare Informatics, {ICHI} 2015,
               Dallas, TX, USA, October 21-23, 2015},
  pages     = {408--416},
  year      = {2015},
  crossref  = {DBLP:conf/ichi/2015},
  url       = {https://doi.org/10.1109/ICHI.2015.58},
  doi       = {10.1109/ICHI.2015.58},
  timestamp = {Tue, 23 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/MehrabiSLPTSLP15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangMRLL15,
  author    = {Yanshan Wang and
               Saeed Mehrabi and
               Majid Rastegar{-}Mojarad and
               Dingcheng Li and
               Hongfang Liu},
  title     = {Retrieval of Semantically Similar Healthcare Questions in Healthcare
               Forums},
  booktitle = {2015 International Conference on Healthcare Informatics, {ICHI} 2015,
               Dallas, TX, USA, October 21-23, 2015},
  pages     = {517--518},
  year      = {2015},
  crossref  = {DBLP:conf/ichi/2015},
  url       = {https://doi.org/10.1109/ICHI.2015.97},
  doi       = {10.1109/ICHI.2015.97},
  timestamp = {Tue, 23 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/WangMRLL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/Rastegar-Mojarad15,
  author    = {Majid Rastegar{-}Mojarad and
               Ravikumar Komandur Elayavilli and
               Dingcheng Li and
               Hongfang Liu},
  title     = {Assessing the Need of Discourse-Level Analysis in Identifying Evidence
               of Drug-Disease Relations in Scientific Literature},
  booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
               Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
               19-23 August 2015},
  pages     = {539--543},
  year      = {2015},
  crossref  = {DBLP:conf/medinfo/2015},
  url       = {https://doi.org/10.3233/978-1-61499-564-7-539},
  doi       = {10.3233/978-1-61499-564-7-539},
  timestamp = {Mon, 22 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/Rastegar-Mojarad15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/MehrabiKRSLKBDS15,
  author    = {Saeed Mehrabi and
               Anand Krishnan and
               Alexandra M. Roch and
               Heidi Schmidt and
               Dingcheng Li and
               Joe Kesterson and
               Chris Beesley and
               Paul R. Dexter and
               C. Max Schmidt and
               Mathew J. Palakal and
               Hongfang Liu},
  title     = {Identification of Patients with Family History of Pancreatic Cancer
               - Investigation of an {NLP} System Portability},
  booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
               Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
               19-23 August 2015},
  pages     = {604--608},
  year      = {2015},
  crossref  = {DBLP:conf/medinfo/2015},
  url       = {https://doi.org/10.3233/978-1-61499-564-7-604},
  doi       = {10.3233/978-1-61499-564-7-604},
  timestamp = {Mon, 22 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/MehrabiKRSLKBDS15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LiRLSMEYL15,
  author    = {Dingcheng Li and
               Majid Rastegar{-}Mojarad and
               Yanpeng Li and
               Sunghwan Sohn and
               Saeed Mehrabi and
               Ravikumar Komandur Elayavilli and
               Yue Yu and
               Hongfang Liu},
  title     = {A Frequency-based Strategy of Obtaining Sentences from Clinical Data
               Repository for Crowdsourcing},
  booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
               Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
               19-23 August 2015},
  pages     = {1033--1034},
  year      = {2015},
  crossref  = {DBLP:conf/medinfo/2015},
  url       = {https://doi.org/10.3233/978-1-61499-564-7-1033},
  doi       = {10.3233/978-1-61499-564-7-1033},
  timestamp = {Mon, 22 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/LiRLSMEYL15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangLLC15,
  author    = {Yanshan Wang and
               Dingcheng Li and
               Hongfang Liu and
               In{-}Chan Choi},
  title     = {Generalized Ensemble Model for Document Ranking},
  journal   = {CoRR},
  volume    = {abs/1507.08586},
  year      = {2015},
  url       = {http://arxiv.org/abs/1507.08586},
  archivePrefix = {arXiv},
  eprint    = {1507.08586},
  timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/WangLLC15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MaoALAMHTSLWGRLKCCYLZLYEGCDL14,
  author    = {Yuqing Mao and
               Kimberly Van Auken and
               Donghui Li and
               Cecilia N. Arighi and
               Peter McQuilton and
               G. Thomas Hayman and
               Susan Tweedie and
               Mary L. Schaeffer and
               Stanley J. F. Laulederkind and
               Shur{-}Jen Wang and
               Julien Gobeill and
               Patrick Ruch and
               Anh Tuan Luu and
               Jung{-}jae Kim and
               Jung{-}Hsien Chiang and
               Yu{-}De Chen and
               Chia{-}Jung Yang and
               Hongfang Liu and
               Dongqing Zhu and
               Yanpeng Li and
               Hong Yu and
               Ehsan Emadzadeh and
               Graciela Gonzalez and
               Jian{-}Ming Chen and
               Hong{-}Jie Dai and
               Zhiyong Lu},
  title     = {Overview of the gene ontology task at BioCreative {IV}},
  journal   = {Database},
  volume    = {2014},
  year      = {2014},
  url       = {https://doi.org/10.1093/database/bau086},
  doi       = {10.1093/database/bau086},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/MaoALAMHTSLWGRLKCCYLZLYEGCDL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZhuLCL14,
  author    = {Dongqing Zhu and
               Dingcheng Li and
               Ben Carterette and
               Hongfang Liu},
  title     = {Integrating information retrieval with distant supervision for Gene
               Ontology annotation},
  journal   = {Database},
  volume    = {2014},
  year      = {2014},
  url       = {https://doi.org/10.1093/database/bau087},
  doi       = {10.1093/database/bau087},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/ZhuLCL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ToriiWL14,
  author    = {Manabu Torii and
               Kavishwar B. Wagholikar and
               Hongfang Liu},
  title     = {Detecting concept mentions in biomedical text using hidden Markov
               model: multiple concept types at once or one at a time?},
  journal   = {J. Biomedical Semantics},
  volume    = {5},
  pages     = {3},
  year      = {2014},
  url       = {https://doi.org/10.1186/2041-1480-5-3},
  doi       = {10.1186/2041-1480-5-3},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biomedsem/ToriiWL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhangTJNSCL14,
  author    = {Yuji Zhang and
               Cui Tao and
               Guoqian Jiang and
               Asha A. Nair and
               Jian Su and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {Network-based analysis reveals distinct association patterns in a
               semantic MEDLINE-based drug-disease-gene network},
  journal   = {J. Biomedical Semantics},
  volume    = {5},
  pages     = {33},
  year      = {2014},
  url       = {https://doi.org/10.1186/2041-1480-5-33},
  doi       = {10.1186/2041-1480-5-33},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biomedsem/ZhangTJNSCL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WangJLL14,
  author    = {Liwei Wang and
               Guoqian Jiang and
               Dingcheng Li and
               Hongfang Liu},
  title     = {Standardizing adverse drug event reporting data},
  journal   = {J. Biomedical Semantics},
  volume    = {5},
  pages     = {36},
  year      = {2014},
  url       = {https://doi.org/10.1186/2041-1480-5-36},
  doi       = {10.1186/2041-1480-5-36},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biomedsem/WangJLL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnCHMCL14,
  author    = {Sunghwan Sohn and
               Cheryl Clark and
               Scott R. Halgrim and
               Sean P. Murphy and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {Research and applications: MedXN: an open source medication extraction
               and normalization tool for clinical text},
  journal   = {{JAMIA}},
  volume    = {21},
  number    = {5},
  pages     = {858--865},
  year      = {2014},
  url       = {https://doi.org/10.1136/amiajnl-2013-002190},
  doi       = {10.1136/amiajnl-2013-002190},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/SohnCHMCL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WuJSL14,
  author    = {Stephen T. Wu and
               Young J. Juhn and
               Sunghwan Sohn and
               Hongfang Liu},
  title     = {Research and applications: Patient-level temporal aggregation for
               text-based asthma status ascertainment},
  journal   = {{JAMIA}},
  volume    = {21},
  number    = {5},
  pages     = {876--884},
  year      = {2014},
  url       = {https://doi.org/10.1136/amiajnl-2013-002463},
  doi       = {10.1136/amiajnl-2013-002463},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/WuJSL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhuWCL14,
  author    = {Dongqing Zhu and
               Stephen T. Wu and
               Ben Carterette and
               Hongfang Liu},
  title     = {Using large clinical corpora for query expansion in text-based cohort
               identification},
  journal   = {Journal of Biomedical Informatics},
  volume    = {49},
  pages     = {275--281},
  year      = {2014},
  url       = {https://doi.org/10.1016/j.jbi.2014.03.010},
  doi       = {10.1016/j.jbi.2014.03.010},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/ZhuWCL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdim/XuQL14,
  author    = {Guixian Xu and
               Lirong Qiu and
               Hongfang Liu},
  title     = {Study on Hot Topic Discovery from Chinese Texts},
  journal   = {{JDIM}},
  volume    = {12},
  number    = {4},
  pages     = {267--273},
  year      = {2014},
  url       = {http://dline.info/fpaper/jdim/v12i4/5.pdf},
  timestamp = {Tue, 03 Mar 2015 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jdim/XuQL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ElayavilliWL14,
  author    = {Ravikumar Komandur Elayavilli and
               Kavishwar B. Wagholikar and
               Hongfang Liu},
  title     = {{NLP} enhances Quality Care Measures in Heart Failure},
  booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  year      = {2014},
  crossref  = {DBLP:conf/amia/2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-383-1.1544522/a-384-1.1544519},
  timestamp = {Wed, 28 Sep 2016 16:57:49 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/ElayavilliWL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JonnalagaddaMNL14,
  author    = {Siddhartha Jonnalagadda and
               Soheil Moosavinasab and
               Chinmoy Nath and
               Dingcheng Li and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {An Automated Approach for Ranking Journals to Help in Clinician Decision
               Support},
  booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  year      = {2014},
  crossref  = {DBLP:conf/amia/2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-173-1.1545154/a-174-1.1545151},
  timestamp = {Thu, 29 Sep 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/JonnalagaddaMNL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiWSML14,
  author    = {Dingcheng Li and
               Zhen Wang and
               Feichen Shen and
               Mohammad Hassan Murad and
               Hongfang Liu},
  title     = {Reducing the Screening Burden of Systematic Review with a Multiple-level
               Relevance Ranking System},
  booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  year      = {2014},
  crossref  = {DBLP:conf/amia/2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-422-1.1544405/a-423-1.1544402},
  timestamp = {Wed, 28 Sep 2016 16:57:49 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiWSML14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnL14,
  author    = {Sunghwan Sohn and
               Hongfang Liu},
  title     = {Analysis of Medication and Indication Occurrences in Clinical Notes},
  booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  year      = {2014},
  crossref  = {DBLP:conf/amia/2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-205-1.1545058/a-206-1.1545055},
  timestamp = {Wed, 28 Sep 2016 16:57:49 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnL14a,
  author    = {Sunghwan Sohn and
               Hongfang Liu},
  title     = {Exploration of Potential Drug Off-label Uses in Clinical Practice},
  booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  year      = {2014},
  crossref  = {DBLP:conf/amia/2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-520-1.1544111/a-521-1.1544108},
  timestamp = {Wed, 28 Sep 2016 16:57:49 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnL14a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuLML14,
  author    = {Stephen T. Wu and
               Dingcheng Li and
               James J. Masanz and
               Hongfang Liu},
  title     = {Layered Spaces for Clinical Information Retrieval},
  booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  year      = {2014},
  crossref  = {DBLP:conf/amia/2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970/t-001-1.1545410/f-001-1.1545411/a-084-1.1545427/a-085-1.1545424},
  timestamp = {Wed, 28 Sep 2016 16:57:49 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WuLML14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhuLCF14,
  author    = {Qian Zhu and
               Hongfang Liu and
               Christopher G. Chute and
               Matthew Ferber},
  title     = {iGenetics: An Individualized Genetic Test Recommendation System Based
               on EHRs},
  booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  year      = {2014},
  crossref  = {DBLP:conf/amia/2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-582-1.1543925/a-583-1.1543922},
  timestamp = {Wed, 28 Sep 2016 16:57:49 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/ZhuLCF14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RavikumarWL14,
  author    = {K. E. Ravikumar and
               Kavishwar B. Wagholikar and
               Hongfang Liu},
  title     = {Challenges in adapting text mining for full text articles to assist
               pathway curation},
  booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
               Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
               USA, September 20-23, 2014},
  pages     = {551--558},
  year      = {2014},
  crossref  = {DBLP:conf/bcb/2014},
  url       = {https://doi.org/10.1145/2649387.2649444},
  doi       = {10.1145/2649387.2649444},
  timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/RavikumarWL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiOLL14,
  author    = {Dingcheng Li and
               Janet Okamoto and
               Hongfang Liu and
               Scott Leischow},
  title     = {An author topic analysis on {NCI} {DCP/DCCPS} PIs},
  booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
               Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
               USA, September 20-23, 2014},
  pages     = {607--608},
  year      = {2014},
  crossref  = {DBLP:conf/bcb/2014},
  url       = {https://doi.org/10.1145/2649387.2660798},
  doi       = {10.1145/2649387.2660798},
  timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/LiOLL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/ShenLLLPCT14,
  author    = {Feichen Shen and
               Dingcheng Li and
               Hongfang Liu and
               Yugyung Lee and
               Jyotishman Pathak and
               Christopher G. Chute and
               Cui Tao},
  title     = {Using semantic web technologies for quality measure phenotyping algorithm
               representation and automatic execution on {EHR} data},
  booktitle = {Proceedings of {IEEE-EMBS} International Conference on Biomedical
               and Health Informatics, {BHI} 2014, Valencia, Spain, June 1-4, 2014},
  pages     = {531--534},
  year      = {2014},
  crossref  = {DBLP:conf/bhi/2014},
  url       = {https://doi.org/10.1109/BHI.2014.6864419},
  doi       = {10.1109/BHI.2014.6864419},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bhi/ShenLLLPCT14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LiWSML14,
  author    = {Dingcheng Li and
               Zhen Wang and
               Feichen Shen and
               Mohammad Hassan Murad and
               Hongfang Liu},
  title     = {Towards a multi-level framework for supporting systematic review -
               {A} pilot study},
  booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014},
  pages     = {43--50},
  year      = {2014},
  crossref  = {DBLP:conf/bibm/2014},
  url       = {https://doi.org/10.1109/BIBM.2014.6999266},
  doi       = {10.1109/BIBM.2014.6999266},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/LiWSML14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhuLCF14,
  author    = {Qian Zhu and
               Hongfang Liu and
               Christopher G. Chute and
               Matthew Ferber},
  title     = {Genetic testing knowledge base {(GTKB)} towards individualized genetic
               test recommendation - An experimental study},
  booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014},
  pages     = {574--577},
  year      = {2014},
  crossref  = {DBLP:conf/bibm/2014},
  url       = {https://doi.org/10.1109/BIBM.2014.6999223},
  doi       = {10.1109/BIBM.2014.6999223},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/ZhuLCF14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/LiOLL14,
  author    = {Dingcheng Li and
               Janet Okamoto and
               Scott Leischow and
               Hongfang Liu},
  title     = {An Author Topic Analysis of Tobacco Regulation Investigators},
  booktitle = {Trends and Applications in Knowledge Discovery and Data Mining - {PAKDD}
               2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD,
               MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA,Tainan, Taiwan,
               May 13-16, 2014. Revised Selected Papers},
  pages     = {616--627},
  year      = {2014},
  crossref  = {DBLP:conf/pakdd/2014-w},
  url       = {https://doi.org/10.1007/978-3-319-13186-3\_55},
  doi       = {10.1007/978-3-319-13186-3\_55},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/pakdd/LiOLL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/JiangLSC14,
  author    = {Guoqian Jiang and
               Hongfang Liu and
               Harold R. Solbrig and
               Christopher G. Chute},
  title     = {Mining Severe Drug-Drug Interaction Adverse Events Using Semantic
               Web Technologies: {A} Case Study},
  booktitle = {Trends and Applications in Knowledge Discovery and Data Mining - {PAKDD}
               2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD,
               MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA,Tainan, Taiwan,
               May 13-16, 2014. Revised Selected Papers},
  pages     = {628--638},
  year      = {2014},
  crossref  = {DBLP:conf/pakdd/2014-w},
  url       = {https://doi.org/10.1007/978-3-319-13186-3\_56},
  doi       = {10.1007/978-3-319-13186-3\_56},
  timestamp = {Thu, 25 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/pakdd/JiangLSC14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/WangLCZ14,
  author    = {Liwei Wang and
               Hongfang Liu and
               Christopher G. Chute and
               Qian Zhu},
  title     = {Cancer Based Pharmacogenomics Network for Drug Repurposing},
  booktitle = {Trends and Applications in Knowledge Discovery and Data Mining - {PAKDD}
               2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD,
               MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA,Tainan, Taiwan,
               May 13-16, 2014. Revised Selected Papers},
  pages     = {639--651},
  year      = {2014},
  crossref  = {DBLP:conf/pakdd/2014-w},
  url       = {https://doi.org/10.1007/978-3-319-13186-3\_57},
  doi       = {10.1007/978-3-319-13186-3\_57},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/pakdd/WangLCZ14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/RavikumarWL14,
  author    = {K. E. Ravikumar and
               Kavishwar B. Wagholikar and
               Hongfang Liu},
  title     = {Towards Pathway Curation Through Literature Mining - {A} Case Study
               Using PharmGKB},
  booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
               Hawaii, USA, January 3-7, 2014},
  pages     = {352--363},
  year      = {2014},
  crossref  = {DBLP:conf/psb/2014},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb14/ravikumarke.pdf},
  timestamp = {Fri, 05 May 2017 13:13:32 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/psb/RavikumarWL14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WuKDMCBCSLC13,
  author    = {Stephen T. Wu and
               Vinod Kaggal and
               Dmitriy Dligach and
               James J. Masanz and
               Pei J. Chen and
               Lee Becker and
               Wendy Webber Chapman and
               Guergana K. Savova and
               Hongfang Liu and
               Christopher G. Chute},
  title     = {A common type system for clinical natural language processing},
  journal   = {J. Biomedical Semantics},
  volume    = {4},
  pages     = {1},
  year      = {2013},
  url       = {https://doi.org/10.1186/2041-1480-4-1},
  doi       = {10.1186/2041-1480-4-1},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biomedsem/WuKDMCBCSLC13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WagholikarTJL13,
  author    = {Kavishwar B. Wagholikar and
               Manabu Torii and
               Siddhartha Jonnalagadda and
               Hongfang Liu},
  title     = {Pooling annotated corpora for clinical concept extraction},
  journal   = {J. Biomedical Semantics},
  volume    = {4},
  pages     = {3},
  year      = {2013},
  url       = {https://doi.org/10.1186/2041-1480-4-3},
  doi       = {10.1186/2041-1480-4-3},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biomedsem/WagholikarTJL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhangTHKL13,
  author    = {Yuji Zhang and
               Cui Tao and
               Yongqun He and
               Pradip Kanjamala and
               Hongfang Liu},
  title     = {Network-based analysis of vaccine-related associations reveals consistent
               knowledge with the vaccine ontology},
  journal   = {J. Biomedical Semantics},
  volume    = {4},
  pages     = {33},
  year      = {2013},
  url       = {https://doi.org/10.1186/2041-1480-4-33},
  doi       = {10.1186/2041-1480-4-33},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/biomedsem/ZhangTHKL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WagholikarMKCHGLC13,
  author    = {Kavishwar B. Wagholikar and
               Kathy L. MacLaughlin and
               Thomas M. Kastner and
               Petra M. Casey and
               Michael R. Henry and
               Robert A. Greenes and
               Hongfang Liu and
               Rajeev Chaudhry},
  title     = {Research and applications: Formative evaluation of the accuracy of
               a clinical decision support system for cervical cancer screening},
  journal   = {{JAMIA}},
  volume    = {20},
  number    = {4},
  pages     = {749--757},
  year      = {2013},
  url       = {https://doi.org/10.1136/amiajnl-2013-001613},
  doi       = {10.1136/amiajnl-2013-001613},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/WagholikarMKCHGLC13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnWLJTEL13,
  author    = {Sunghwan Sohn and
               Kavishwar B. Wagholikar and
               Dingcheng Li and
               Siddhartha Jonnalagadda and
               Cui Tao and
               Ravikumar Komandur Elayavilli and
               Hongfang Liu},
  title     = {Comprehensive temporal information detection from clinical text: medical
               events, time, and {TLINK} identification},
  journal   = {{JAMIA}},
  volume    = {20},
  number    = {5},
  pages     = {836--842},
  year      = {2013},
  url       = {https://doi.org/10.1136/amiajnl-2013-001622},
  doi       = {10.1136/amiajnl-2013-001622},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/SohnWLJTEL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JonnalagaddaFMWFML13,
  author    = {Siddhartha Jonnalagadda and
               Guilherme Del Fiol and
               Richard Medlin and
               Charlene R. Weir and
               Marcelo Fiszman and
               Javed Mostafa and
               Hongfang Liu},
  title     = {Automatically extracting sentences from Medline citations to support
               clinicians' information needs},
  journal   = {{JAMIA}},
  volume    = {20},
  number    = {5},
  pages     = {995--1000},
  year      = {2013},
  url       = {https://doi.org/10.1136/amiajnl-2012-001347},
  doi       = {10.1136/amiajnl-2012-001347},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/JonnalagaddaFMWFML13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JonnalagaddaCL13,
  author    = {Siddhartha Jonnalagadda and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {Prioritize journals relevant to a clinical topic: {A} survey of {US}
               cardiologists about heart failure},
  booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 16-20, 2013},
  year      = {2013},
  crossref  = {DBLP:conf/amia/2013},
  url       = {http://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-243-1.583280/a-244-1.583274},
  timestamp = {Tue, 22 Jul 2014 12:46:55 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/JonnalagaddaCL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiWTCL13,
  author    = {Dingcheng Li and
               Liwei Wang and
               Cui Tao and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {Coreference Resolution from Medical Corpus with Topic Modeling},
  booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 16-20, 2013},
  year      = {2013},
  crossref  = {DBLP:conf/amia/2013},
  url       = {http://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-299-1.583088/a-300-1.583082},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiWTCL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnCHMCL13,
  author    = {Sunghwan Sohn and
               Cheryl Clark and
               Scott R. Halgrim and
               Sean P. Murphy and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {Medication Extraction and Normalization from Clinical Notes},
  booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 16-20, 2013},
  year      = {2013},
  crossref  = {DBLP:conf/amia/2013},
  url       = {http://knowledge.amia.org/amia-55142-a2013e-1.580047/t-02-1.584671/f-002-1.584672/a-489-1.584729/a-492-1.584726},
  timestamp = {Wed, 27 Aug 2014 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnCHMCL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnCHMCL13a,
  author    = {Sunghwan Sohn and
               Cheryl Clark and
               Scott R. Halgrim and
               Sean P. Murphy and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {Clinical Drug Extraction and Normalization from Clinical Notes},
  booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 16-20, 2013},
  year      = {2013},
  crossref  = {DBLP:conf/amia/2013},
  url       = {http://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-491-1.582514/a-493-1.582511},
  timestamp = {Wed, 27 Aug 2014 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/SohnCHMCL13a},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WagholikarHLC13,
  author    = {Kavishwar B. Wagholikar and
               Ronald A. Hankey and
               Hongfang Liu and
               Rajeev Chaudhry},
  title     = {Decision Support can Improve Time Efficiency of Healthcare Providers
               for Deciding Preventive Care Recommendations},
  booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 16-20, 2013},
  year      = {2013},
  crossref  = {DBLP:conf/amia/2013},
  url       = {http://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-536-1.582381/a-537-1.582375},
  timestamp = {Tue, 22 Jul 2014 12:46:55 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WagholikarHLC13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JonnalagaddaMLACL13,
  author    = {Siddhartha Jonnalagadda and
               Soheil Moosavinasab and
               Dingcheng Li and
               Martin D. Abel and
               Christopher G. Chute and
               Hongfang Liu},
  title     = {Prioritizing journals relevant to a topic for addressing clinicians'
               information needs},
  booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
               Shanghai, China, December 18-21, 2013},
  pages     = {5--6},
  year      = {2013},
  crossref  = {DBLP:conf/bibm/2013},
  url       = {https://doi.org/10.1109/BIBM.2013.6732590},
  doi       = {10.1109/BIBM.2013.6732590},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/JonnalagaddaMLACL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/WangL13,
  author    = {Liwei Wang and
               Hongfang Liu},
  title     = {Profiling adverse drug events of cancer drug ingredients using normalized
               {AERS} data},
  booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
               Shanghai, China, December 18-21, 2013},
  pages     = {46--52},
  year      = {2013},
  crossref  = {DBLP:conf/bibm/2013},
  url       = {https://doi.org/10.1109/BIBM.2013.6732599},
  doi       = {10.1109/BIBM.2013.6732599},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/WangL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhangLTSL13,
  author    = {Yuji Zhang and
               Dingcheng Li and
               Cui Tao and
               Feichen Shen and
               Hongfang Liu},
  title     = {An integrative computational approach to identify disease-specific
               networks from PubMed literature information},
  booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
               Shanghai, China, December 18-21, 2013},
  pages     = {72--75},
  year      = {2013},
  crossref  = {DBLP:conf/bibm/2013},
  url       = {https://doi.org/10.1109/BIBM.2013.6732738},
  doi       = {10.1109/BIBM.2013.6732738},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/ZhangLTSL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LiLCJ13,
  author    = {Dingcheng Li and
               Hongfang Liu and
               Christopher G. Chute and
               Siddhartha Jonnalagadda},
  title     = {Towards assigning references using semantic, journal and citation
               relevance},
  booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
               Shanghai, China, December 18-21, 2013},
  pages     = {499--503},
  year      = {2013},
  crossref  = {DBLP:conf/bibm/2013},
  url       = {https://doi.org/10.1109/BIBM.2013.6732545},
  doi       = {10.1109/BIBM.2013.6732545},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/LiLCJ13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/LiuWJS13,
  author    = {Hongfang Liu and
               Kavishwar B. Wagholikar and
               Siddhartha Jonnalagadda and
               Sunghwan Sohn},
  title     = {Integrated cTAKES for Concept Mention Detection and Normalization},
  booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
               23-26, 2013.},
  year      = {2013},
  crossref  = {DBLP:conf/clef/2013w},
  url       = {http://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFeHealth-LiuEt2013.pdf},
  timestamp = {Mon, 30 May 2016 16:28:37 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/clef/LiuWJS13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhuLCL13,
  author    = {Dongqing Zhu and
               Dingcheng Li and
               Ben Carterette and
               Hongfang Liu},
  title     = {An Incremental Approach for {MEDLINE} MeSH Indexing},
  booktitle = {Proceedings of the first Workshop on Bio-Medical Semantic Indexing
               and Question Answering, a Post-Conference Workshop of Conference and
               Labs of the Evaluation Forum 2013 {(CLEF} 2013) , Valencia, Spain,
               September 27th, 2013.},
  year      = {2013},
  crossref  = {DBLP:conf/clef/2013bioasq},
  url       = {http://ceur-ws.org/Vol-1094/bioasq2013\_submission\_7.pdf},
  timestamp = {Mon, 30 May 2016 16:28:37 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/clef/ZhuLCL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhuWMCL13,
  author    = {Dongqing Zhu and
               Stephen T. Wu and
               James J. Masanz and
               Ben Carterette and
               Hongfang Liu},
  title     = {Using Discharge Summaries to Improve Information Retrieval in Clinical
               Domain},
  booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
               23-26, 2013.},
  year      = {2013},
  crossref  = {DBLP:conf/clef/2013w},
  url       = {http://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFeHealth-ZhuEt2013.pdf},
  timestamp = {Mon, 29 Aug 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/clef/ZhuWMCL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ZhangTHKL13,
  author    = {Yuji Zhang and
               Cui Tao and
               Yongqun He and
               Pradip Kanjamala and
               Hongfang Liu},
  title     = {Analysis of Vaccine-related Networks using Semantic {MEDLINE} and
               the Vaccine Ontology},
  booktitle = {Proceedings of the {ICBO2013} Workshops: International Workshop on
               Vaccine and Drug Ontology Studies {(VDOS} 2013), International Workshop
               on Definitions in Ontologies {(DO} 2013), part of the Semantic Trilogy
               2013 , Montreal, Quebec, Canada, July 6th - 12th 2013.},
  year      = {2013},
  crossref  = {DBLP:conf/icbo/2013vdos},
  url       = {http://ceur-ws.org/Vol-1061/Paper6\_vdos2013.pdf},
  timestamp = {Mon, 30 May 2016 16:28:38 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icbo/ZhangTHKL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icsh/TaoLSLPLC13,
  author    = {Cui Tao and
               Dingcheng Li and
               Feichen Shen and
               Zonghui Lian and
               Jyotishman Pathak and
               Hongfang Liu and
               Christopher G. Chute},
  title     = {Phenotyping on {EHR} Data Using {OWL} and Semantic Web Technologies},
  booktitle = {Smart Health - International Conference, {ICSH} 2013, Beijing, China,
               August 3-4, 2013. Proceedings},
  pages     = {31--32},
  year      = {2013},
  crossref  = {DBLP:conf/icsh/2013},
  url       = {https://doi.org/10.1007/978-3-642-39844-5\_5},
  doi       = {10.1007/978-3-642-39844-5\_5},
  timestamp = {Fri, 15 Jun 2018 09:28:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icsh/TaoLSLPLC13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/JiangWLSC13,
  author    = {Guoqian Jiang and
               Liwei Wang and
               Hongfang Liu and
               Harold R. Solbrig and
               Christopher G. Chute},
  title     = {Building a Knowledge Base of Severe Adverse Drug Events Based on {AERS}
               Reporting Data Using Semantic Web Technologies},
  booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
               and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
  pages     = {496--500},
  year      = {2013},
  crossref  = {DBLP:conf/medinfo/2013},
  url       = {https://doi.org/10.3233/978-1-61499-289-9-496},
  doi       = {10.3233/978-1-61499-289-9-496},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/JiangWLSC13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ZhangFGJMMWLMF13,
  author    = {Mingyuan Zhang and
               Guilherme Del Fiol and
               Randall Grout and
               Siddhartha Jonnalagadda and
               Richard Medlin and
               Rashmi Mishra and
               Charlene R. Weir and
               Hongfang Liu and
               Javed Mostafa and
               Marcelo Fiszman},
  title     = {Automatic Identification of Comparative Effectiveness Research from
               Medline Citations to Support Clinicians' Treatment Information Needs},
  booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
               and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
  pages     = {846--850},
  year      = {2013},
  crossref  = {DBLP:conf/medinfo/2013},
  url       = {https://doi.org/10.3233/978-1-61499-289-9-846},
  doi       = {10.3233/978-1-61499-289-9-846},
  timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/ZhangFGJMMWLMF13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WangJLL13,
  author    = {Liwei Wang and
               Guoqian Jiang and
               Dingcheng Li and
               Hongfang Liu},
  title     = {Standardizing Drug Adverse Event Reporting Data},
  booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
               and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
  pages     = {1101},
  year      = {2013},
  crossref  = {DBLP:conf/medinfo/2013},
  url       = {https://doi.org/10.3233/978-1-61499-289-9-1101},
  doi       = {10.3233/978-1-61499-289-9-1101},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/WangJLL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/starsem/WuZCL13,
  author    = {Stephen T. Wu and
               Dongqing Zhu and
               Ben Carterette and
               Hongfang Liu},
  title     = {MayoClinicNLP-CORE: Semantic representations for textual similarity},
  booktitle = {Proceedings of the Second Joint Conference on Lexical and Computational
               Semantics, *SEM 2013, June 13-14, 2013, Atlanta, Georgia, {USA.}},
  pages     = {148--154},
  year      = {2013},
  crossref  = {DBLP:conf/starsem/2013},
  url       = {http://aclweb.org/anthology/S/S13/S13-1021.pdf},
  timestamp = {Wed, 05 Oct 2016 12:02:38 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/starsem/WuZCL13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WagholikarMHGHLC12,
  author    = {Kavishwar B. Wagholikar and
               Kathy L. MacLaughlin and
               Michael R. Henry and
               Robert A. Greenes and
               Ronald A. Hankey and
               Hongfang Liu and
               Rajeev Chaudhry},
  title     = {Clinical decision support with automated text processing for cervical
               cancer screening},
  journal   = {{JAMIA}},
  volume    = {19},
  number    = {5},
  pages     = {833--839},
  year      = {2012},
  url       = {https://doi.org/10.1136/amiajnl-2012-000820},
  doi       = {10.1136/amiajnl-2012-000820},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/WagholikarMHGHLC12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JonnalagaddaLSWWTL12,
  author    = {Siddhartha Jonnalagadda and
               Dingcheng Li and
               Sunghwan Sohn and
               Stephen Tze{-}Inn Wu and
               Kavishwar B. Wagholikar and
               Manabu Torii and
               Hongfang Liu},
  title     = {Coreference analysis in clinical notes: a multi-pass sieve with alternate
               anaphora resolution modules},
  journal   = {{JAMIA}},
  volume    = {19},
  number    = {5},
  pages     = {867--874},
  year      = {2012},
  url       = {https://doi.org/10.1136/amiajnl-2011-000766},
  doi       = {10.1136/amiajnl-2011-000766},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/JonnalagaddaLSWWTL12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WuLLTMCS12,
  author    = {Stephen T. Wu and
               Hongfang Liu and
               Dingcheng Li and
               Cui Tao and
               Mark A. Musen and
               Christopher G. Chute and
               Nigam H. Shah},
  title     = {Unified Medical Language System term occurrences in clinical notes:
               a large-scale corpus analysis},
  journal   = {{JAMIA}},
  volume    = {19},
  number    = {e1},
  year      = {2012},
  url       = {https://doi.org/10.1136/amiajnl-2011-000744},
  doi       = {10.1136/amiajnl-2011-000744},
  timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/WuLLTMCS12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BielinskiPLSJCPR12,
  author    = {Suzette J. Bielinski and
               Jyotishman Pathak and
               Hongfang Liu and
               Sunghwan Sohn and
               Gail P. Jarvik and
               David Carrell and
               Naveen Pereira and
               Veronique Roger},
  title     = {Using Electronic Health Records to Identify Heart Failure Cohorts
               with Differentiation for Preserved and Reduced Ejection Fraction},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-302-1.640299/a-303-1.640296},
  timestamp = {Fri, 18 Jul 2014 13:08:08 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/BielinskiPLSJCPR12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuSJPDACBLDX12,
  author    = {Mei Liu and
               Anushi Shah and
               Min Jiang and
               Neeraja B. Peterson and
               Qi Dai and
               Melinda Aldrich and
               Qingxia Chen and
               Erica A. Bowton and
               Hongfang Liu and
               Joshua C. Denny and
               Hua Xu},
  title     = {A Study of Transportability of an Existing Smoking Status Detection
               Module across Institutions},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-068-1.641029/a-069-1.641026},
  timestamp = {Thu, 08 Mar 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiuSJPDACBLDX12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuWLJSWHHC12,
  author    = {Hongfang Liu and
               Stephen T. Wu and
               Dingcheng Li and
               Siddhartha Jonnalagadda and
               Sunghwan Sohn and
               Kavishwar B. Wagholikar and
               Peter J. Haug and
               Stanley M. Huff and
               Christopher G. Chute},
  title     = {Towards a semantic lexicon for clinical natural language processing},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-067-1.641032/a-068-1.641029},
  timestamp = {Mon, 29 Aug 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiuWLJSWHHC12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WagholikarMHGHLC12,
  author    = {Kavishwar B. Wagholikar and
               Kathy L. MacLaughlin and
               Michael R. Henry and
               Robert A. Greenes and
               Ronald A. Hankey and
               Hongfang Liu and
               Rajeev Chaudhry},
  title     = {Clinical Decision Support with Natural Language Processing for Cervical
               Cancer Screening},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-598-1.639397/a-599-1.639394},
  timestamp = {Wed, 10 Sep 2014 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WagholikarMHGHLC12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangJWL12,
  author    = {Liwei Wang and
               Guoqian Jiang and
               Wei Wang and
               Hongfang Liu},
  title     = {A Preliminary Study on Normalizing {AERS} Drug Names Using RxNorm},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-604-1.639378/a-605-1.639374},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WangJWL12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuJSEWJL12,
  author    = {Stephen T. Wu and
               Young J. Juhn and
               Sunghwan Sohn and
               Ravikumar Komandur Elayavilli and
               Kavishwar B. Wagholikar and
               Siddhartha Jonnalagadda and
               Hongfang Liu},
  title     = {Asthma Status Identification with Natural Language Processing},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-006-1.640361/f-001-1.640362/a-277-1.640378/a-278-1.640375},
  timestamp = {Mon, 29 Aug 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WuJSEWJL12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuWKLC12,
  author    = {Stephen T. Wu and
               Mark Wieland and
               Vinod Kaggal and
               Hongfang Liu and
               Christopher G. Chute},
  title     = {Tracking Immigrant Health with Natural Language Processing},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-618-1.639335/a-619-1.639332},
  timestamp = {Mon, 29 Aug 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/WuWKLC12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/XuACPDLSXLFLD12,
  author    = {Hua Xu and
               Melinda Aldrich and
               Qingxia Chen and
               Neeraja B. Peterson and
               Qi Dai and
               Mia A. Levy and
               Anushi Shah and
               Han Xue and
               Ying Li and
               Carol Friedman and
               Hongfang Liu and
               Joshua C. Denny},
  title     = {Electronic health record data suggests metformin improves cancer survival:
               {A} new model for drug repurposing studies},
  booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/amia/2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547/t-006-1.640361/f-001-1.640362/a-278-1.640375/a-279-1.640372},
  timestamp = {Thu, 08 Mar 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/amia/XuACPDLSXLFLD12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/XuLYWL12,
  author    = {Bo Xu and
               Hongfei Lin and
               Zhihao Yang and
               Kavishwar B. Wagholikar and
               Hongfang Liu},
  title     = {Classifying protein complexes from candidate subgraphs using fuzzy
               machine learning model},
  booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine
               Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012},
  pages     = {640--647},
  year      = {2012},
  crossref  = {DBLP:conf/bibm/2012w},
  url       = {https://doi.org/10.1109/BIBMW.2012.6470213},
  doi       = {10.1109/BIBMW.2012.6470213},
  timestamp = {Thu, 13 Sep 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/XuLYWL12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cgc/LiTLC12,
  author    = {Dingcheng Li and
               Cui Tao and
               Hongfang Liu and
               Christopher G. Chute},
  title     = {Ontology-Based Temporal Relation Modeling with MapReduce Latent Dirichlet
               Allocations for Big {EHR} Data},
  booktitle = {2012 Second International Conference on Cloud and Green Computing,
               {CGC} 2012, Xiangtan, Hunan, China, November 1-3, 2012},
  pages     = {708--715},
  year      = {2012},
  crossref  = {DBLP:conf/cgc/2012},
  url       = {https://doi.org/10.1109/CGC.2012.112},
  doi       = {10.1109/CGC.2012.112},
  timestamp = {Tue, 05 Feb 2019 11:49:58 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/cgc/LiTLC12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/LiuWTC12,
  author    = {Hongfang Liu and
               Stephen T. Wu and
               Cui Tao and
               Christopher G. Chute},
  title     = {Modeling {UIMA} type system using web ontology language: towards interoperability
               among UIMA-based {NLP} tools},
  booktitle = {Proceedings of the 2nd International Workshop on Managing Interoperability
               and compleXity in Health Systems, MIX-HS, Maui, HI, USA, October 29,
               2012},
  pages     = {31--36},
  year      = {2012},
  crossref  = {DBLP:conf/cikm/2012mixhs},
  url       = {https://doi.org/10.1145/2389672.2389679},
  doi       = {10.1145/2389672.2389679},
  timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/cikm/LiuWTC12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/WagholikarSWKBGWLLCB12,
  author    = {Kavishwar B. Wagholikar and
               Sunghwan Sohn and
               Stephen T. Wu and
               Vinod Kaggal and
               Sheila Buehler and
               Robert A. Greenes and
               Tsung{-}Teh Wu and
               David W. Larson and
               Hongfang Liu and
               Rajeev Chaudhry and
               Lisa Boardman},
  title     = {Clinical Decision Support for Colonoscopy Surveillance Using Natural
               Language Processing},
  booktitle = {2012 {IEEE} Second International Conference on Healthcare Informatics,
               Imaging and Systems Biology, {HISB} 2012, La Jolla, CA, USA, September
               27-28, 2012},
  pages     = {12--21},
  year      = {2012},
  crossref  = {DBLP:conf/hisb/2012},
  url       = {https://doi.org/10.1109/HISB.2012.11},
  doi       = {10.1109/HISB.2012.11},
  timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/hisb/WagholikarSWKBGWLLCB12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/JonnalagaddaFMWFML12,
  author    = {Siddhartha Jonnalagadda and
               Guilherme Del Fiol and
               Richard Medlin and
               Charlene R. Weir and
               Marcelo Fiszman and
               Javed Mostafa and
               Hongfang Liu},
  title     = {Automatically Extracting Sentences from Medline Citations to Support
               Clinicians' Information Needs},
  booktitle = {2012 {IEEE} Second International Conference on Healthcare Informatics,
               Imaging and Systems Biology, {HISB} 2012, La Jolla, CA, USA, September
               27-28, 2012},
  pages     = {72},
  year      = {2012},
  crossref  = {DBLP:conf/hisb/2012},
  url       = {https://doi.org/10.1109/HISB.2012.22},
  doi       = {10.1109/HISB.2012.22},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/hisb/JonnalagaddaFMWFML12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/SohnMJWWCLH12,
  author    = {Sunghwan Sohn and
               Sean P. Murphy and
               Siddhartha Jonnalagadda and
               Kavishwar B. Wagholikar and
               Stephen T. Wu and
               Christopher G. Chute and
               Hongfang Liu and
               Scott R. Halgrim},
  title     = {Systematic Analysis of Cross-Institutional Medication Description
               Patterns in Clinical Notes},
  booktitle = {2012 {IEEE} Second International Conference on Healthcare Informatics,
               Imaging and Systems Biology, {HISB} 2012, La Jolla, CA, USA, September
               27-28, 2012},
  pages     = {118},
  year      = {2012},
  crossref  = {DBLP:conf/hisb/2012},
  url       = {https://doi.org/10.1109/HISB.2012.43},
  doi       = {10.1109/HISB.2012.43},
  timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/hisb/SohnMJWWCLH12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WuMRL12,
  author    = {Stephen T. Wu and
               James J. Masanz and
               K. E. Ravikumar and
               Hongfang Liu},
  title     = {Three Questions About Clinical Information Retrieval},
  booktitle = {Proceedings of The Twenty-First Text REtrieval Conference, {TREC}
               2012, Gaithersburg, Maryland, USA, November 6-9, 2012},
  year      = {2012},
  crossref  = {DBLP:conf/trec/2012},
  url       = {http://trec.nist.gov/pubs/trec21/papers/MayoClinicNLP.medical.final.pdf},
  timestamp = {Mon, 29 Aug 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/WuMRL12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZeebergLKERBBBLRWP11,
  author    = {Barry Zeeberg and
               Hongfang Liu and
               Ari B. Kahn and
               Martin Ehler and
               Vinodh N. Rajapakse and
               Robert F. Bonner and
               Jacob D. Brown and
               Brian P. Brooks and
               Vladimir L. Larionov and
               William C. Reinhold and
               John N. Weinstein and
               Yves Pommier},
  title     = {RedundancyMiner: De-replication of redundant {GO} categories in microarray
               and proteomics analysis},
  journal   = {{BMC} Bioinformatics},
  volume    = {12},
  pages     = {52},
  year      = {2011},
  url       = {https://doi.org/10.1186/1471-2105-12-52},
  doi       = {10.1186/1471-2105-12-52},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/ZeebergLKERBBBLRWP11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangTLHH11,
  author    = {Jinlian Wang and
               Manabu Torii and
               Hongfang Liu and
               Gerald W. Hart and
               Zhang{-}Zhi Hu},
  title     = {dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation},
  journal   = {{BMC} Bioinformatics},
  volume    = {12},
  pages     = {91},
  year      = {2011},
  url       = {https://doi.org/10.1186/1471-2105-12-91},
  doi       = {10.1186/1471-2105-12-91},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/WangTLHH11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11,
  author    = {Zhiyong Lu and
               Hung{-}Yu Kao and
               Chih{-}Hsuan Wei and
               Minlie Huang and
               Jingchen Liu and
               Cheng{-}Ju Kuo and
               Chun{-}Nan Hsu and
               Richard Tzong{-}Han Tsai and
               Hong{-}Jie Dai and
               Naoaki Okazaki and
               Han{-}Cheol Cho and
               Martin Gerner and
               Ill{\'{e}}s Solt and
               Shashank Agarwal and
               Feifan Liu and
               Dina Vishnyakova and
               Patrick Ruch and
               Martin Romacker and
               Fabio Rinaldi and
               Sanmitra Bhattacharya and
               Padmini Srinivasan and
               Hongfang Liu and
               Manabu Torii and
               S{\'{e}}rgio Matos and
               David Campos and
               Karin Verspoor and
               Kevin M. Livingston and
               W. John Wilbur},
  title     = {The gene normalization task in BioCreative {III}},
  journal   = {{BMC} Bioinformatics},
  volume    = {12},
  number    = {{S-8}},
  pages     = {S2},
  year      = {2011},
  url       = {https://doi.org/10.1186/1471-2105-12-S8-S2},
  doi       = {10.1186/1471-2105-12-S8-S2},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ToriiYNMLHN11,
  author    = {Manabu Torii and
               Lanlan Yin and
               Thang Nguyen and
               Chand T. Mazumdar and
               Hongfang Liu and
               David M. Hartley and
               Noele P. Nelson},
  title     = {An exploratory study of a text classification framework for Internet-based
               surveillance of emerging epidemics},
  journal   = {I. J. Medical Informatics},
  volume    = {80},
  number    = {1},
  pages     = {56--66},
  year      = {2011},
  url       = {https://doi.org/10.1016/j.ijmedinf.2010.10.015},
  doi       = {10.1016/j.ijmedinf.2010.10.015},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/ijmi/ToriiYNMLHN11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ToriiWL11,
  author    = {Manabu Torii and
               Kavishwar B. Wagholikar and
               Hongfang Liu},
  title     = {Using machine learning for concept extraction on clinical documents
               from multiple data sources},
  journal   = {{JAMIA}},
  volume    = {18},
  number    = {5},
  pages     = {580--587},
  year      = {2011},
  url       = {https://doi.org/10.1136/amiajnl-2011-000155},
  doi       = {10.1136/amiajnl-2011-000155},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/ToriiWL11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WagholikarTL11,
  author    = {Kavishwar B. Wagholikar and
               Manabu Torii and
               Hongfang Liu},
  title     = {Human gene/protein synonym dictionary from WikiLinks},
  booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
               and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
               2011},
  pages     = {462--464},
  year      = {2011},
  crossref  = {DBLP:conf/bcb/2011},
  url       = {https://doi.org/10.1145/2147805.2147870},
  doi       = {10.1145/2147805.2147870},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/WagholikarTL11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ChenTLL11,
  author    = {Yang Chen and
               Manabu Torii and
               Chang{-}Tien Lu and
               Hongfang Liu},
  title     = {Learning from positive and unlabeled documents for automated detection
               of alternative splicing sentences in medline abstracts},
  booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
               Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
  pages     = {530--537},
  year      = {2011},
  crossref  = {DBLP:conf/bibm/2011w},
  url       = {https://doi.org/10.1109/BIBMW.2011.6112425},
  doi       = {10.1109/BIBMW.2011.6112425},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/ChenTLL11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icica/LiuLL11,
  author    = {Hongfang Liu and
               Ruijuan Li and
               Nana Li},
  title     = {Hamilton Non-holonomic Momentum Equation of the System and Conclusions},
  booktitle = {Information Computing and Applications - Second International Conference,
               {ICICA} 2011, Qinhuangdao, China, October 28-31, 2011. Proceedings,
               Part {I}},
  pages     = {23--29},
  year      = {2011},
  crossref  = {DBLP:conf/icica/2011-1},
  url       = {https://doi.org/10.1007/978-3-642-27503-6\_4},
  doi       = {10.1007/978-3-642-27503-6\_4},
  timestamp = {Wed, 29 Aug 2018 17:16:57 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icica/LiuLL11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WuWSKL11,
  author    = {Stephen T. Wu and
               Kavishwar B. Wagholikar and
               Sunghwan Sohn and
               Vinod Kaggal and
               Hongfang Liu},
  title     = {Empirical Ontologies for Cohort Identification},
  booktitle = {Proceedings of The Twentieth Text REtrieval Conference, {TREC} 2011,
               Gaithersburg, Maryland, USA, November 15-18, 2011},
  year      = {2011},
  crossref  = {DBLP:conf/trec/2011},
  url       = {http://trec.nist.gov/pubs/trec20/papers/Mayo.update.pdf},
  timestamp = {Mon, 29 Aug 2016 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/WuWSKL11},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/YinXTNMWHL10,
  author    = {Lanlan Yin and
               Guixian Xu and
               Manabu Torii and
               Zhendong Niu and
               Jos{\'{e}} M. Maisog and
               Cathy H. Wu and
               Zhang{-}Zhi Hu and
               Hongfang Liu},
  title     = {Document classification for mining host pathogen protein-protein interactions},
  journal   = {Artificial Intelligence in Medicine},
  volume    = {49},
  number    = {3},
  pages     = {155--160},
  year      = {2010},
  url       = {https://doi.org/10.1016/j.artmed.2010.04.003},
  doi       = {10.1016/j.artmed.2010.04.003},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/artmed/YinXTNMWHL10},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ese/KoruLZE10,
  author    = {G{\"{u}}nes Koru and
               Hongfang Liu and
               Dongsong Zhang and
               Khaled El Emam},
  title     = {Testing the theory of relative defect proneness for closed-source
               software},
  journal   = {Empirical Software Engineering},
  volume    = {15},
  number    = {6},
  pages     = {577--598},
  year      = {2010},
  url       = {https://doi.org/10.1007/s10664-010-9132-x},
  doi       = {10.1007/s10664-010-9132-x},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/ese/KoruLZE10},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcmam/LiuTXG10,
  author    = {Hongfang Liu and
               Manabu Torii and
               Guixian Xu and
               Johannes Goll},
  title     = {Classification Systems for Bacterial Protein-Protein Interaction Document
               Retrieval},
  journal   = {{IJCMAM}},
  volume    = {1},
  number    = {1},
  pages     = {34--44},
  year      = {2010},
  url       = {https://doi.org/10.4018/jcmam.2010072003},
  doi       = {10.4018/jcmam.2010072003},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/ijcmam/LiuTXG10},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfipm/SongL10,
  author    = {Min Song and
               Hongfang Liu},
  title     = {LFXtractor: Text chunking for long form detection from biomedical
               text},
  journal   = {I. J. Functional Informatics and Personalised Medicine},
  volume    = {3},
  number    = {2},
  pages     = {89--102},
  year      = {2010},
  url       = {https://doi.org/10.1504/IJFIPM.2010.037148},
  doi       = {10.1504/IJFIPM.2010.037148},
  timestamp = {Tue, 18 Jul 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/ijfipm/SongL10},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/ToriiBLNJNH10,
  author    = {Manabu Torii and
               Burt{-}Ujin Bayarsaikhan and
               Hongfang Liu and
               Thang Nguyen and
               Kevin Jones and
               Noele P. Nelson and
               David M. Hartley},
  title     = {An exploratory study of news article clustering for web-based bio-surveillance},
  booktitle = {{ACM} International Health Informatics Symposium, {IHI} 2010, Arlington,
               VA, USA, November 11 - 12, 2010, Proceedings},
  pages     = {435--439},
  year      = {2010},
  crossref  = {DBLP:conf/ihi/2010},
  url       = {https://doi.org/10.1145/1882992.1883058},
  doi       = {10.1145/1882992.1883058},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ihi/ToriiBLNJNH10},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smbm/LeeTHTSL10,
  author    = {Chong Min Lee and
               Manabu Torii and
               Zhang{-}Zhi Hu and
               Yi{-}Ting Tsai and
               Jinesh Shah and
               Hongfang Liu},
  title     = {Evaluating gene/protein name tagging and mapping for article retrieval},
  booktitle = {Proceedings of the Fourth International Symposium for Semantic Mining
               in Biomedicine, Cambridge, United Kingdom, October, 2010},
  year      = {2010},
  crossref  = {DBLP:conf/smbm/2010},
  url       = {http://ceur-ws.org/Vol-714/ShortPaper02\_Lee.pdf},
  timestamp = {Tue, 13 Feb 2018 15:52:34 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/smbm/LeeTHTSL10},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArighiLNBDBSW09,
  author    = {Cecilia N. Arighi and
               Hongfang Liu and
               Darren A. Natale and
               Winona C. Barker and
               Harold J. Drabkin and
               Judith A. Blake and
               Barry Smith and
               Cathy H. Wu},
  title     = {TGF-beta signaling proteins and the Protein Ontology},
  journal   = {{BMC} Bioinformatics},
  volume    = {10},
  number    = {{S-5}},
  year      = {2009},
  url       = {https://doi.org/10.1186/1471-2105-10-S5-S3},
  doi       = {10.1186/1471-2105-10-S5-S3},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/ArighiLNBDBSW09},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ToriiHWL09,
  author    = {Manabu Torii and
               Zhang{-}Zhi Hu and
               Cathy H. Wu and
               Hongfang Liu},
  title     = {Research Paper: BioTagger-GM: {A} Gene/Protein Name Recognition System},
  journal   = {{JAMIA}},
  volume    = {16},
  number    = {2},
  pages     = {247--255},
  year      = {2009},
  url       = {https://doi.org/10.1197/jamia.M2844},
  doi       = {10.1197/jamia.M2844},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/ToriiHWL09},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tse/KoruZEL09,
  author    = {Akif G{\"{u}}nes Koru and
               Dongsong Zhang and
               Khaled El Emam and
               Hongfang Liu},
  title     = {An Investigation into the Functional Form of the Size-Defect Relationship
               for Software Modules},
  journal   = {{IEEE} Trans. Software Eng.},
  volume    = {35},
  number    = {2},
  pages     = {293--304},
  year      = {2009},
  url       = {https://doi.org/10.1109/TSE.2008.90},
  doi       = {10.1109/TSE.2008.90},
  timestamp = {Wed, 17 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/tse/KoruZEL09},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ToriiLH09,
  author    = {Manabu Torii and
               Hongfang Liu and
               Zhang{-}Zhi Hu},
  title     = {Support Vector Machine-Based Mucin-Type O-linked Glycosylation Site
               Prediction Using Enhanced Sequence Feature Encoding},
  booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2009},
  year      = {2009},
  crossref  = {DBLP:conf/amia/2009},
  url       = {http://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-123-1.627382/a-124-1.627379},
  timestamp = {Tue, 22 Jul 2014 10:27:12 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/ToriiLH09},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csee/UmarjiSKL09,
  author    = {Medha Umarji and
               Carolyn B. Seaman and
               Akif G{\"{u}}nes Koru and
               Hongfang Liu},
  title     = {Software Engineering Education for Bioinformatics},
  booktitle = {Proceedings 22nd Conference on Software Engineering Education and
               Training, {CSEET} 2009, Hyderabad, India, 17-20 Feb. 2009},
  pages     = {216--223},
  year      = {2009},
  crossref  = {DBLP:conf/csee/2009},
  url       = {https://doi.org/10.1109/CSEET.2009.44},
  doi       = {10.1109/CSEET.2009.44},
  timestamp = {Wed, 17 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/csee/UmarjiSKL09},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csie/JinZL09,
  author    = {Hongyong Jin and
               Xiuping Zhao and
               Hongfang Liu},
  title     = {Testing of the Uniformity of Color Appearance Space},
  booktitle = {{CSIE} 2009, 2009 {WRI} World Congress on Computer Science and Information
               Engineering, March 31 - April 2, 2009, Los Angeles, California, USA,
               7 Volumes},
  pages     = {307--311},
  year      = {2009},
  crossref  = {DBLP:conf/csie/2009},
  url       = {https://doi.org/10.1109/CSIE.2009.539},
  doi       = {10.1109/CSIE.2009.539},
  timestamp = {Tue, 23 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/csie/JinZL09},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcbs/XuNUGQL09,
  author    = {Guixian Xu and
               Zhendong Niu and
               Peter Uetz and
               Xu Gao and
               Xuping Qin and
               Hongfang Liu},
  title     = {Semi-supervised Learning of Text Classification on Bacterial Protein-Protein
               Interaction Documents},
  booktitle = {International Joint Conferences on Bioinformatics, Systems Biology
               and Intelligent Computing, {IJCBS} 2009, Shanghai, China, 3-5 August
               2009},
  pages     = {263--270},
  year      = {2009},
  crossref  = {DBLP:conf/ijcbs/2009},
  url       = {https://doi.org/10.1109/IJCBS.2009.68},
  doi       = {10.1109/IJCBS.2009.68},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ijcbs/XuNUGQL09},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KestlerMKBGLKZW08,
  author    = {Hans A. Kestler and
               Andr{\'{e}} M{\"{u}}ller and
               Johann M. Kraus and
               Malte Buchholz and
               Thomas M. Gress and
               Hongfang Liu and
               David W. Kane and
               Barry Zeeberg and
               John N. Weinstein},
  title     = {VennMaster: Area-proportional Euler diagrams for functional {GO} analysis
               of microarrays},
  journal   = {{BMC} Bioinformatics},
  volume    = {9},
  year      = {2008},
  url       = {https://doi.org/10.1186/1471-2105-9-67},
  doi       = {10.1186/1471-2105-9-67},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/KestlerMKBGLKZW08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RyanZCCKLW08,
  author    = {Michael C. Ryan and
               Barry Zeeberg and
               Natasha J. Caplen and
               James A. Cleland and
               Ari B. Kahn and
               Hongfang Liu and
               John N. Weinstein},
  title     = {SpliceCenter: {A} suite of web-based bioinformatic applications for
               evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray,
               and peptide-based studies},
  journal   = {{BMC} Bioinformatics},
  volume    = {9},
  year      = {2008},
  url       = {https://doi.org/10.1186/1471-2105-9-313},
  doi       = {10.1186/1471-2105-9-313},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/RyanZCCKLW08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ese/KoruEZLM08,
  author    = {Akif G{\"{u}}nes Koru and
               Khaled El Emam and
               Dongsong Zhang and
               Hongfang Liu and
               Divya Mathew},
  title     = {Theory of relative defect proneness},
  journal   = {Empirical Software Engineering},
  volume    = {13},
  number    = {5},
  pages     = {473--498},
  year      = {2008},
  url       = {https://doi.org/10.1007/s10664-008-9080-x},
  doi       = {10.1007/s10664-008-9080-x},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/ese/KoruEZLM08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuLYC08,
  author    = {Hongfang Liu and
               Xin Li and
               Victoria Yoon and
               Robert Clarke},
  title     = {Annotating breast cancer microarray samples using ontologies},
  booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 8-12, 2008},
  year      = {2008},
  crossref  = {DBLP:conf/amia/2008},
  url       = {http://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-085-1.626309/a-086-1.626306},
  timestamp = {Wed, 23 Jul 2014 20:53:32 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiuLYC08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/XuYTNWHL08,
  author    = {Guixian Xu and
               Lanlan Yin and
               Manabu Torii and
               Zhendong Niu and
               Cathy H. Wu and
               Zhang{-}Zhi Hu and
               Hongfang Liu},
  title     = {Document Classification for Mining Host Pathogen Protein-Protein Interactions},
  booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
  pages     = {461--466},
  year      = {2008},
  crossref  = {DBLP:conf/bibm/2008},
  url       = {https://doi.org/10.1109/BIBM.2008.66},
  doi       = {10.1109/BIBM.2008.66},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/XuYTNWHL08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HuCHVLGW08,
  author    = {Zhang{-}Zhi Hu and
               K. Bretonnel Cohen and
               Lynette Hirschman and
               Alfonso Valencia and
               Hongfang Liu and
               Michelle G. Giglio and
               Cathy H. Wu},
  title     = {iProLINK: {A} Framework for Linking Text Mining with Ontology and
               Systems Biology},
  booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
  pages     = {467--472},
  year      = {2008},
  crossref  = {DBLP:conf/bibm/2008},
  url       = {https://doi.org/10.1109/BIBM.2008.73},
  doi       = {10.1109/BIBM.2008.73},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/HuCHVLGW08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/BebuSL08,
  author    = {Ionut Bebu and
               Fran{\c{c}}oise Seillier{-}Moiseiwitsch and
               Hongfang Liu},
  title     = {Analysis of Microarray Titration Experiments},
  booktitle = {International Conference on Bioinformatics {\&} Computational
               Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
               2 Volumes},
  pages     = {942--946},
  year      = {2008},
  crossref  = {DBLP:conf/biocomp/2008},
  timestamp = {Fri, 06 Feb 2009 11:52:50 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/biocomp/BebuSL08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LiuTXHG08,
  author    = {Hongfang Liu and
               Manabu Torii and
               Guixian Xu and
               Zhang{-}Zhi Hu and
               Johannes Goll},
  title     = {Learning from Positive and Unlabeled Documents for Retrieval of Bacterial
               Protein-Protein Interaction Literature},
  booktitle = {Linking Literature, Information, and Knowledge for Biology - Workshop
               of the BioLink Special Interest Group, {ISMB/ECCB} 2009, Stockholm,
               Sweden, June 28-29, 2009, Revised Selected Papers},
  pages     = {62--70},
  year      = {2008},
  crossref  = {DBLP:conf/ismb/2009bl},
  url       = {https://doi.org/10.1007/978-3-642-13131-8\_8},
  doi       = {10.1007/978-3-642-13131-8\_8},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ismb/LiuTXHG08},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZQKFKRNMRKW07,
  author    = {Hongfang Liu and
               Barry Zeeberg and
               Gang Qu and
               Akif G{\"{u}}nes Koru and
               Alessandro Ferrucci and
               Ari B. Kahn and
               Michael C. Ryan and
               Antej Nuhanovic and
               Peter J. Munson and
               William C. Reinhold and
               David W. Kane and
               John N. Weinstein},
  title     = {AffyProbeMiner: a web resource for computing or retrieving accurately
               redefined Affymetrix probe sets},
  journal   = {Bioinformatics},
  volume    = {23},
  number    = {18},
  pages     = {2385--2390},
  year      = {2007},
  url       = {https://doi.org/10.1093/bioinformatics/btm360},
  doi       = {10.1093/bioinformatics/btm360},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bioinformatics/LiuZQKFKRNMRKW07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KahnRLZJW07,
  author    = {Ari B. Kahn and
               Michael C. Ryan and
               Hongfang Liu and
               Barry Zeeberg and
               D. Curtis Jamison and
               John N. Weinstein},
  title     = {SpliceMiner: a high-throughput database implementation of the {NCBI}
               Evidence Viewer for microarray splice variant analysis},
  journal   = {{BMC} Bioinformatics},
  volume    = {8},
  year      = {2007},
  url       = {https://doi.org/10.1186/1471-2105-8-75},
  doi       = {10.1186/1471-2105-8-75},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/KahnRLZJW07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NataleABBCHLSW07,
  author    = {Darren A. Natale and
               Cecilia N. Arighi and
               Winona C. Barker and
               Judith A. Blake and
               Ti{-}Cheng Chang and
               Zhang{-}Zhi Hu and
               Hongfang Liu and
               Barry Smith and
               Cathy H. Wu},
  title     = {Framework for a Protein Ontology},
  journal   = {{BMC} Bioinformatics},
  volume    = {8},
  number    = {{S-9}},
  year      = {2007},
  url       = {https://doi.org/10.1186/1471-2105-8-S9-S1},
  doi       = {10.1186/1471-2105-8-S9-S1},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/NataleABBCHLSW07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ToriiHSWL07,
  author    = {Manabu Torii and
               Zhang{-}Zhi Hu and
               Min Song and
               Cathy H. Wu and
               Hongfang Liu},
  title     = {A comparison study on algorithms of detecting long forms for short
               forms in biomedical text},
  journal   = {{BMC} Bioinformatics},
  volume    = {8},
  number    = {{S-9}},
  year      = {2007},
  url       = {https://doi.org/10.1186/1471-2105-8-S9-S5},
  doi       = {10.1186/1471-2105-8-S9-S5},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/ToriiHSWL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jss/KoruL07,
  author    = {Akif G{\"{u}}nes Koru and
               Hongfang Liu},
  title     = {Identifying and characterizing change-prone classes in two large-scale
               open-source products},
  journal   = {Journal of Systems and Software},
  volume    = {80},
  number    = {1},
  pages     = {63--73},
  year      = {2007},
  url       = {https://doi.org/10.1016/j.jss.2006.05.017},
  doi       = {10.1016/j.jss.2006.05.017},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/jss/KoruL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ToriiL07,
  author    = {Manabu Torii and
               Hongfang Liu},
  title     = {Enhancing Acronym/Abbreviation Knowledge Bases with Semantic Information},
  booktitle = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 10-14, 2007},
  year      = {2007},
  crossref  = {DBLP:conf/amia/2007},
  url       = {http://knowledge.amia.org/amia-55142-a2007a-1.623841/t-001-1.624626/f-001-1.624627/a-141-1.624705/a-142-1.624702},
  timestamp = {Thu, 24 Jul 2014 17:23:55 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/ToriiL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/BebuSL07,
  author    = {Ionut Bebu and
               Fran{\c{c}}oise Seillier{-}Moiseiwitsch and
               Hongfang Liu},
  title     = {Semiparametric {RMA} Background-Correction for Oligonucleotide Arrays},
  booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
               and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
               School, Boston, MA, {USA}},
  pages     = {1404--1408},
  year      = {2007},
  crossref  = {DBLP:conf/bibe/2007},
  url       = {https://doi.org/10.1109/BIBE.2007.4375756},
  doi       = {10.1109/BIBE.2007.4375756},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibe/BebuSL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/LiuTHW07,
  author    = {Hongfang Liu and
               Manabu Torii and
               Zhang{-}Zhi Hu and
               Cathy H. Wu},
  title     = {Mapping Gene/Protein Names in Free Text to Biomedical Databases},
  booktitle = {Workshops Proceedings of the 7th {IEEE} International Conference on
               Data Mining {(ICDM} 2007), October 28-31, 2007, Omaha, Nebraska, {USA}},
  pages     = {101--106},
  year      = {2007},
  crossref  = {DBLP:conf/icdm/2007w},
  url       = {https://doi.org/10.1109/ICDMW.2007.94},
  doi       = {10.1109/ICDMW.2007.94},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/icdm/LiuTHW07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icse/KoruZL07,
  author    = {Akif G{\"{u}}nes Koru and
               Dongsong Zhang and
               Hongfang Liu},
  title     = {Modeling the Effect of Size on Defect Proneness for Open-Source Software},
  booktitle = {29th International Conference on Software Engineering {(ICSE} 2007),
               Minneapolis, MN, USA, May 20-26, 2007, Companion Volume},
  pages     = {115--124},
  year      = {2007},
  crossref  = {DBLP:conf/icse/2007c},
  url       = {https://doi.org/10.1109/ICSECOMPANION.2007.54},
  doi       = {10.1109/ICSECOMPANION.2007.54},
  timestamp = {Tue, 23 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icse/KoruZL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lbm/ToriiL07,
  author    = {Manabu Torii and
               Hongfang Liu},
  title     = {Classifier Ensemble for Biomedical Document Retrieval},
  booktitle = {Short Paper Proceedings of the 2nd International Symposium on Languages
               in Biology and Medicine {(LBM} 2007), Singapore, December 6-7, 2007},
  year      = {2007},
  crossref  = {DBLP:conf/lbm/2007s},
  url       = {http://ceur-ws.org/Vol-319/Paper5.pdf},
  timestamp = {Mon, 30 May 2016 16:57:35 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/lbm/ToriiL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/oss/KoruZL07,
  author    = {Akif G{\"{u}}nes Koru and
               Dongsong Zhang and
               Hongfang Liu},
  title     = {Effect of Coupling on Defect Proneness in Evolutionary Open-Source
               Software Development},
  booktitle = {Open Source Development, Adoption and Innovation, {IFIP} Working Group
               2.13 on Open Source Software, June 11-14, 2007, Limerick, Ireland},
  pages     = {271--276},
  year      = {2007},
  crossref  = {DBLP:conf/oss/2007},
  url       = {https://doi.org/10.1007/978-0-387-72486-7\_27},
  doi       = {10.1007/978-0-387-72486-7\_27},
  timestamp = {Thu, 18 Oct 2018 16:08:21 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/oss/KoruZL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RuizSWL07,
  author    = {Miguel E. Ruiz and
               Ying Sun and
               Jianqiang Wang and
               Hongfang Liu},
  title     = {Exploring Traits of Adjectives to Predict Polarity Opinion in Blogs
               and Semantic Filters in Genomics},
  booktitle = {Proceedings of The Sixteenth Text REtrieval Conference, {TREC} 2007,
               Gaithersburg, Maryland, USA, November 5-9, 2007},
  year      = {2007},
  crossref  = {DBLP:conf/trec/2007},
  url       = {http://trec.nist.gov/pubs/trec16/papers/unorth-texas.blog.final.pdf},
  timestamp = {Tue, 07 Apr 2015 13:04:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/RuizSWL07},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHZW06,
  author    = {Hongfang Liu and
               Zhang{-}Zhi Hu and
               Jian Zhang and
               Cathy H. Wu},
  title     = {BioThesaurus: a web-based thesaurus of protein and gene names},
  journal   = {Bioinformatics},
  volume    = {22},
  number    = {1},
  pages     = {103--105},
  year      = {2006},
  url       = {https://doi.org/10.1093/bioinformatics/bti749},
  doi       = {10.1093/bioinformatics/bti749},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/bioinformatics/LiuHZW06},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuMDLF06,
  author    = {Hua Xu and
               Marianthi Markatou and
               Rositsa Dimova and
               Hongfang Liu and
               Carol Friedman},
  title     = {Machine learning and word sense disambiguation in the biomedical domain:
               design and evaluation issues},
  journal   = {{BMC} Bioinformatics},
  volume    = {7},
  pages     = {334},
  year      = {2006},
  url       = {https://doi.org/10.1186/1471-2105-7-334},
  doi       = {10.1186/1471-2105-7-334},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/XuMDLF06},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuHTWF06,
  author    = {Hongfang Liu and
               Zhang{-}Zhi Hu and
               Manabu Torii and
               Cathy H. Wu and
               Carol Friedman},
  title     = {Research Paper: Quantitative Assessment of Dictionary-based Protein
               Named Entity Tagging},
  journal   = {{JAMIA}},
  volume    = {13},
  number    = {5},
  pages     = {497--507},
  year      = {2006},
  url       = {https://doi.org/10.1197/jamia.M2085},
  doi       = {10.1197/jamia.M2085},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/LiuHTWF06},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhouTCCLLHF06,
  author    = {Li Zhou and
               Ying Tao and
               James J. Cimino and
               Elizabeth S. Chen and
               Hongfang Liu and
               Yves A. Lussier and
               George Hripcsak and
               Carol Friedman},
  title     = {Terminology model discovery using natural language processing and
               visualization techniques},
  pages     = {626--636},
  year      = {2006},
  url       = {https://doi.org/10.1016/j.jbi.2005.10.006},
  doi       = {10.1016/j.jbi.2005.10.006},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/ZhouTCCLLHF06},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/ToriiL06,
  author    = {Manabu Torii and
               Hongfang Liu},
  title     = {Headwords and Suffixes in Biomedical Names},
  booktitle = {Knowledge Discovery in Life Science Literature, {PAKDD} 2006 International
               Workshop, {KDLL} 2006, Singapore, April 9, 2006, Proceedings},
  pages     = {29--41},
  year      = {2006},
  crossref  = {DBLP:conf/pakdd/2006kdll},
  url       = {https://doi.org/10.1007/11683568\_3},
  doi       = {10.1007/11683568\_3},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/pakdd/ToriiL06},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLF05,
  author    = {Lifeng Chen and
               Hongfang Liu and
               Carol Friedman},
  title     = {Gene name ambiguity of eukaryotic nomenclatures},
  journal   = {Bioinformatics},
  volume    = {21},
  number    = {2},
  pages     = {248--256},
  year      = {2005},
  url       = {https://doi.org/10.1093/bioinformatics/bth496},
  doi       = {10.1093/bioinformatics/bth496},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bioinformatics/ChenLF05},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuHW05,
  author    = {Hongfang Liu and
               Zhang{-}Zhi Hu and
               Cathy H. Wu},
  title     = {DynGO: a tool for visualizing and mining of Gene Ontology and its
               associations},
  journal   = {{BMC} Bioinformatics},
  volume    = {6},
  pages     = {201},
  year      = {2005},
  url       = {https://doi.org/10.1186/1471-2105-6-201},
  doi       = {10.1186/1471-2105-6-201},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/bmcbi/LiuHW05},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigsoft/KoruL05,
  author    = {Akif G{\"{u}}nes Koru and
               Hongfang Liu},
  title     = {An investigation of the effect of module size on defect prediction
               using static measures},
  journal   = {{ACM} {SIGSOFT} Software Engineering Notes},
  volume    = {30},
  number    = {4},
  pages     = {1--5},
  year      = {2005},
  url       = {https://doi.org/10.1145/1082983.1083172},
  doi       = {10.1145/1082983.1083172},
  timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/sigsoft/KoruL05},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/software/KoruL05,
  author    = {Akif G{\"{u}}nes Koru and
               Hongfang Liu},
  title     = {Building Effective Defect-Prediction Models in Practice},
  journal   = {{IEEE} Software},
  volume    = {22},
  number    = {6},
  pages     = {23--29},
  year      = {2005},
  url       = {https://doi.org/10.1109/MS.2005.149},
  doi       = {10.1109/MS.2005.149},
  timestamp = {Thu, 18 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/software/KoruL05},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/LiuHW05,
  author    = {Hongfang Liu and
               Zhang{-}Zhi Hu and
               Cathy H. Wu},
  title     = {Dynamically Generating a Protein Entity Dictionary Using Online Resources},
  booktitle = {{ACL} 2005, 43rd Annual Meeting of the Association for Computational
               Linguistics, Proceedings of the Conference, 25-30 June 2005, University
               of Michigan, {USA}},
  pages     = {17--20},
  year      = {2005},
  crossref  = {DBLP:conf/acl/2005},
  url       = {http://aclweb.org/anthology/P/P05/P05-3005.pdf},
  timestamp = {Thu, 17 Aug 2017 17:55:42 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/acl/LiuHW05},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonDHLRRSTWL05,
  author    = {Alan R. Aronson and
               Dina Demner{-}Fushman and
               Susanne M. Humphrey and
               Jimmy J. Lin and
               Patrick Ruch and
               Miguel E. Ruiz and
               Lawrence H. Smith and
               Lorraine K. Tanabe and
               W. John Wilbur and
               Hongfang Liu},
  title     = {Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving
               and Annotating Textual Genomics Documents},
  booktitle = {Proceedings of the Fourteenth Text REtrieval Conference, {TREC} 2005,
               Gaithersburg, Maryland, USA, November 15-18, 2005},
  year      = {2005},
  crossref  = {DBLP:conf/trec/2005},
  url       = {http://trec.nist.gov/pubs/trec14/papers/nlm-umd.geo.pdf},
  timestamp = {Tue, 07 Apr 2015 13:04:04 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/AronsonDHLRRSTWL05},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/HuMHLW04,
  author    = {Zhang{-}Zhi Hu and
               Inderjeet Mani and
               Vincent Hermoso and
               Hongfang Liu and
               Cathy H. Wu},
  title     = {iProLINK: an integrated protein resource for literature mining},
  journal   = {Computational Biology and Chemistry},
  volume    = {28},
  number    = {5-6},
  pages     = {409--416},
  year      = {2004},
  url       = {https://doi.org/10.1016/j.compbiolchem.2004.09.010},
  doi       = {10.1016/j.compbiolchem.2004.09.010},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/candc/HuMHLW04},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuTF04,
  author    = {Hongfang Liu and
               Virginia Teller and
               Carol Friedman},
  title     = {Research Paper: {A} Multi-aspect Comparison Study of Supervised Word
               Sense Disambiguation},
  journal   = {{JAMIA}},
  volume    = {11},
  number    = {4},
  pages     = {320--331},
  year      = {2004},
  url       = {https://doi.org/10.1197/jamia.M1533},
  doi       = {10.1197/jamia.M1533},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/LiuTF04},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/ChuangLBMKH04,
  author    = {Han{-}Yu Chuang and
               Hongfang Liu and
               Stuart M. Brown and
               Cameron McMunn{-}Coffran and
               Cheng{-}Yan Kao and
               D. Frank Hsu},
  title     = {Identifying Significant Genes from Microarray Data},
  booktitle = {4th {IEEE} International Symposium on BioInformatics and BioEngineering
               {(BIBE} 2004), 19-21 March 2004, Taichung, Taiwan},
  pages     = {358--365},
  year      = {2004},
  crossref  = {DBLP:conf/bibe/2004},
  url       = {https://doi.org/10.1109/BIBE.2004.1317366},
  doi       = {10.1109/BIBE.2004.1317366},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibe/ChuangLBMKH04},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ispan/ChuangLCKH04,
  author    = {Han{-}Yu Chuang and
               Hongfang Liu and
               Fang{-}An Chen and
               Cheng{-}Yan Kao and
               D. Frank Hsu},
  title     = {Combination Methods in Microarray Analysis},
  booktitle = {7th International Symposium on Parallel Architectures, Algorithms,
               and Networks {(I-SPAN} 2004), 10-12 May 2004, Hong Kong, SAR, China},
  pages     = {625--630},
  year      = {2004},
  crossref  = {DBLP:conf/ispan/2004},
  url       = {https://doi.org/10.1109/ISPAN.2004.1300548},
  doi       = {10.1109/ISPAN.2004.1300548},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ispan/ChuangLCKH04},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LiuF04,
  author    = {Hongfang Liu and
               Carol Friedman},
  title     = {CliniViewer: {A} Tool for Viewing Electronic Medical Records Based
               on Natural Language Processing and {XML}},
  booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
               Informatics, San Francisco, California, USA, September 7-11, 2004},
  pages     = {639--643},
  year      = {2004},
  crossref  = {DBLP:conf/medinfo/2004},
  url       = {https://doi.org/10.3233/978-1-60750-949-3-639},
  doi       = {10.3233/978-1-60750-949-3-639},
  timestamp = {Fri, 26 May 2017 16:02:55 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/LiuF04},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/TuasonCLBF04,
  author    = {Olivia Tuason and
               Lifeng Chen and
               Hongfang Liu and
               Judith A. Blake and
               Carol Friedman},
  title     = {Biological Nomenclatures: {A} Source of Lexical Knowledge and Ambiguity},
  booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
               6-10 January 2004},
  pages     = {238--249},
  year      = {2004},
  crossref  = {DBLP:conf/psb/2004},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb04/tuason.pdf},
  timestamp = {Fri, 05 May 2017 13:11:14 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/psb/TuasonCLBF04},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonHIKLMSTWXDL04,
  author    = {Alan R. Aronson and
               Susanne M. Humphrey and
               Nicholas C. Ide and
               Won Kim and
               Russell F. Loane and
               James G. Mork and
               Lawrence H. Smith and
               Lorraine K. Tanabe and
               W. John Wilbur and
               Natalie Xie and
               Dina Demner{-}Fushman and
               Hongfang Liu},
  title     = {Knowledge-Intensive and Statistical Approaches to the Retrieval and
               Annotation of Genomics {MEDLINE} Citations},
  booktitle = {Proceedings of the Thirteenth Text REtrieval Conference, {TREC} 2004,
               Gaithersburg, Maryland, USA, November 16-19, 2004},
  year      = {2004},
  crossref  = {DBLP:conf/trec/2004},
  url       = {http://trec.nist.gov/pubs/trec13/papers/nlm-umd-ul.geo.pdf},
  timestamp = {Wed, 28 Mar 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/AronsonHIKLMSTWXDL04},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/FriedmanLS03,
  author    = {Carol Friedman and
               Hongfang Liu and
               Lyudmila Shagina},
  title     = {A vocabulary development and visualization tool based on natural language
               processing and the mining of textual patient reports},
  journal   = {Journal of Biomedical Informatics},
  volume    = {36},
  number    = {3},
  pages     = {189--201},
  year      = {2003},
  url       = {https://doi.org/10.1016/j.jbi.2003.08.005},
  doi       = {10.1016/j.jbi.2003.08.005},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/FriedmanLS03},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LiuF03,
  author    = {Hongfang Liu and
               Carol Friedman},
  title     = {Mining Terminological Knowledge in Large Biomedical Corpora},
  booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
               Lihue, Hawaii, USA, January 3-7, 2003},
  pages     = {415--426},
  year      = {2003},
  crossref  = {DBLP:conf/psb/2003},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb03/liu.pdf},
  timestamp = {Mon, 22 Jun 2015 17:24:45 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/psb/LiuF03},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuJF02,
  author    = {Hongfang Liu and
               Stephen B. Johnson and
               Carol Friedman},
  title     = {Research Paper: Automatic Resolution of Ambiguous Terms Based on Machine
               Learning and Conceptual Relations in the {UMLS}},
  journal   = {{JAMIA}},
  volume    = {9},
  number    = {6},
  pages     = {621--636},
  year      = {2002},
  url       = {https://doi.org/10.1197/jamia.M1101},
  doi       = {10.1197/jamia.M1101},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/LiuJF02},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuAF02,
  author    = {Hongfang Liu and
               Alan R. Aronson and
               Carol Friedman},
  title     = {A study of abbreviations in {MEDLINE} abstracts},
  booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
               San Antonio, TX, USA, November 9-13, 2002},
  year      = {2002},
  crossref  = {DBLP:conf/amia/2002},
  url       = {http://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-093-1.612970/a-094-1.612967},
  timestamp = {Tue, 05 Aug 2014 16:48:31 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiuAF02},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LiuLF01,
  author    = {Hongfang Liu and
               Yves A. Lussier and
               Carol Friedman},
  title     = {Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative
               Text: An Unsupervised Method},
  journal   = {Journal of Biomedical Informatics},
  volume    = {34},
  number    = {4},
  pages     = {249--261},
  year      = {2001},
  url       = {https://doi.org/10.1006/jbin.2001.1023},
  doi       = {10.1006/jbin.2001.1023},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jbi/LiuLF01},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FriedmanLSJH01,
  author    = {Carol Friedman and
               Hongfang Liu and
               Lyudmila Shagina and
               Stephen B. Johnson and
               George Hripcsak},
  title     = {Evaluating the {UMLS} as a source of lexical knowledge for medical
               language processing},
  booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 3-7, 2001},
  year      = {2001},
  crossref  = {DBLP:conf/amia/2001},
  url       = {http://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-038-1.600023/a-039-1.600020},
  timestamp = {Wed, 06 Aug 2014 18:50:51 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/FriedmanLSJH01},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuLF01,
  author    = {Hongfang Liu and
               Yves A. Lussier and
               Carol Friedman},
  title     = {A study of abbreviations in the {UMLS}},
  booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 3-7, 2001},
  year      = {2001},
  crossref  = {DBLP:conf/amia/2001},
  url       = {http://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-079-1.599902/a-080-1.599899},
  timestamp = {Wed, 06 Aug 2014 18:50:51 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiuLF01},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuF00,
  author    = {Hongfang Liu and
               Carol Friedman},
  title     = {A method for vocabulary development and visualization based on medical
               language processing and {XML}},
  booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
               Los Angeles, CA, USA, November 4-8, 2000},
  year      = {2000},
  crossref  = {DBLP:conf/amia/2000},
  url       = {http://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-101-1.609674/a-102-1.609671},
  timestamp = {Thu, 07 Aug 2014 20:46:35 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/LiuF00},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/FriedmanHSL99,
  author    = {Carol Friedman and
               George Hripcsak and
               Lyudmila Shagina and
               Hongfang Liu},
  title     = {Research Paper: Representing Information in Patient Reports Using
               Natural Language Processing and the Extensible Markup Language},
  journal   = {{JAMIA}},
  volume    = {6},
  number    = {1},
  pages     = {76--87},
  year      = {1999},
  url       = {https://doi.org/10.1136/jamia.1999.0060076},
  doi       = {10.1136/jamia.1999.0060076},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/FriedmanHSL99},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iscas/LiuHH99,
  author    = {Hongfang Liu and
               D. Frank Hsu and
               S. Horiguchi},
  title     = {Generalized shuffle-exchange digraphs: Hamiltonian properties},
  booktitle = {Proceedings of the 1999 International Symposium on Circuits and Systems,
               {ISCAS} 1999, Orlando, Florida, USA, May 30 - June 2, 1999},
  pages     = {157--160},
  year      = {1999},
  crossref  = {DBLP:conf/iscas/1999},
  url       = {https://doi.org/10.1109/ISCAS.1999.780119},
  doi       = {10.1109/ISCAS.1999.780119},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/iscas/LiuHH99},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2019,
  editor    = {Russ B. Altman and
               A. Keith Dunker and
               Lawrence Hunter and
               Marylyn D. Ritchie and
               Teri E. Klein},
  title     = {Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island
               of Hawaii, Hawaii, USA, January 3-7, 2019},
  year      = {2019},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb19/},
  timestamp = {Tue, 15 Jan 2019 16:24:24 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/psb/2019},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2018,
  editor    = {Amarda Shehu and
               Cathy H. Wu and
               Christina Boucher and
               Jing Li and
               Hongfang Liu and
               Mihai Pop},
  title     = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
               Computational Biology, and Health Informatics, {BCB} 2018, Washington,
               DC, USA, August 29 - September 01, 2018},
  publisher = {{ACM}},
  year      = {2018},
  url       = {https://doi.org/10.1145/3233547},
  doi       = {10.1145/3233547},
  timestamp = {Wed, 21 Nov 2018 12:44:25 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/2018},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2018,
  editor    = {Huiru Jane Zheng and
               Zoraida Callejas and
               David Griol and
               Haiying Wang and
               Xiaohua Hu and
               Harald Schmidt and
               Jan Baumbach and
               Julie Dickerson and
               Le Zhang},
  title     = {{IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2018, Madrid, Spain, December 3-6, 2018},
  publisher = {{IEEE} Computer Society},
  year      = {2018},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=8609864},
  isbn      = {978-1-5386-5488-0},
  timestamp = {Tue, 05 Feb 2019 12:34:17 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2018},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ichi/2018w,
  title     = {{IEEE} International Conference on Healthcare Informatics Workshops,
               {ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
  publisher = {{IEEE} Computer Society},
  year      = {2018},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=8411504},
  isbn      = {978-1-5386-6777-4},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/2018w},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2018,
  editor    = {Russ B. Altman and
               A. Keith Dunker and
               Lawrence Hunter and
               Marylyn D. Ritchie and
               Teri E. Klein},
  title     = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
               of Hawaii, Hawaii, USA, January 3-7, 2018},
  year      = {2018},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb18/},
  timestamp = {Tue, 15 Jan 2019 17:21:04 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/psb/2018},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2017,
  title     = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 4-8, 2017},
  publisher = {{AMIA}},
  year      = {2017},
  url       = {http://knowledge.amia.org/65881-amia-1.3897810},
  timestamp = {Thu, 21 Jun 2018 07:22:34 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2017,
  editor    = {Nurit Haspel and
               Lenore J. Cowen and
               Amarda Shehu and
               Tamer Kahveci and
               Giuseppe Pozzi},
  title     = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
               Computational Biology, and Health Informatics, {BCB} 2017, Boston,
               MA, USA, August 20-23, 2017},
  publisher = {{ACM}},
  year      = {2017},
  url       = {http://dl.acm.org/citation.cfm?id=3107411},
  isbn      = {978-1-4503-4722-8},
  timestamp = {Fri, 18 Aug 2017 07:52:20 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2017,
  editor    = {Xiaohua Hu and
               Chi{-}Ren Shyu and
               Yana Bromberg and
               Jean Gao and
               Yang Gong and
               Dmitry Korkin and
               Illhoi Yoo and
               Huiru Jane Zheng},
  title     = {2017 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2017, Kansas City, MO, USA, November 13-16, 2017},
  publisher = {{IEEE} Computer Society},
  year      = {2017},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=8169618},
  isbn      = {978-1-5090-3050-7},
  timestamp = {Fri, 25 Jan 2019 15:17:12 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cri/2017,
  title     = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
               CA, USA, March 27-30, 2017},
  publisher = {{AMIA}},
  year      = {2017},
  url       = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710},
  timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ichi/2017,
  title     = {2017 {IEEE} International Conference on Healthcare Informatics, {ICHI}
               2017, Park City, UT, USA, August 23-26, 2017},
  publisher = {{IEEE} Computer Society},
  year      = {2017},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=8030514},
  isbn      = {978-1-5090-4881-6},
  timestamp = {Tue, 31 Jul 2018 12:20:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/medinfo/2017,
  editor    = {Adi V. Gundlapalli and
               Marie{-}Christine Jaulent and
               Dongsheng Zhao},
  title     = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
               of the 16th World Congress on Medical and Health Informatics, Hangzhou,
               China, 21-25 August 2017},
  series    = {Studies in Health Technology and Informatics},
  volume    = {245},
  publisher = {{IOS} Press},
  year      = {2017},
  isbn      = {978-1-61499-829-7},
  timestamp = {Tue, 09 Jan 2018 14:56:24 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/semeval/2017,
  editor    = {Steven Bethard and
               Marine Carpuat and
               Marianna Apidianaki and
               Saif M. Mohammad and
               Daniel M. Cer and
               David Jurgens},
  title     = {Proceedings of the 11th International Workshop on Semantic Evaluation,
               SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
  publisher = {Association for Computational Linguistics},
  year      = {2017},
  url       = {http://aclanthology.info/volumes/proceedings-of-the-11th-international-workshop-on-semantic-evaluation-semeval-2017},
  timestamp = {Mon, 14 Aug 2017 12:19:45 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/trec/2017,
  editor    = {Ellen M. Voorhees and
               Angela Ellis},
  title     = {Proceedings of The Twenty-Sixth Text REtrieval Conference, {TREC}
               2017, Gaithersburg, Maryland, USA, November 15-17, 2017},
  volume    = {Special Publication 500-324},
  publisher = {National Institute of Standards and Technology {(NIST)}},
  year      = {2017},
  url       = {https://trec.nist.gov/pubs/trec26/trec2017.html},
  timestamp = {Wed, 18 Jul 2018 08:01:59 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2016,
  title     = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 12-16, 2016},
  publisher = {{AMIA}},
  year      = {2016},
  url       = {http://knowledge.amia.org/amia-63300-1.3360278},
  timestamp = {Sun, 28 May 2017 18:22:36 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2016,
  title     = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
               Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
               WA, USA, October 2-5, 2016},
  publisher = {{ACM}},
  year      = {2016},
  url       = {https://doi.org/10.1145/2975167},
  doi       = {10.1145/2975167},
  isbn      = {978-1-4503-4225-4},
  timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bhi/2016,
  title     = {2016 {IEEE-EMBS} International Conference on Biomedical and Health
               Informatics, {BHI} 2016, Las Vegas, NV, USA, February 24-27, 2016},
  publisher = {{IEEE}},
  year      = {2016},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=7449722},
  isbn      = {978-1-5090-2455-1},
  timestamp = {Mon, 25 Apr 2016 15:28:47 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bhi/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2016,
  editor    = {Tianhai Tian and
               Qinghua Jiang and
               Yunlong Liu and
               Kevin Burrage and
               Jiangning Song and
               Yadong Wang and
               Xiaohua Hu and
               Shinichi Morishita and
               Qian Zhu and
               Guohua Wang},
  title     = {{IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2016, Shenzhen, China, December 15-18, 2016},
  publisher = {{IEEE} Computer Society},
  year      = {2016},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=7811899},
  isbn      = {978-1-5090-1611-2},
  timestamp = {Fri, 17 Mar 2017 11:23:19 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/clef/2016w,
  editor    = {Krisztian Balog and
               Linda Cappellato and
               Nicola Ferro and
               Craig Macdonald},
  title     = {Working Notes of {CLEF} 2016 - Conference and Labs of the Evaluation
               forum, {\'{E}}vora, Portugal, 5-8 September, 2016},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1609},
  publisher = {CEUR-WS.org},
  year      = {2016},
  url       = {http://ceur-ws.org/Vol-1609},
  urn       = {urn:nbn:de:0074-1609-5},
  timestamp = {Thu, 11 Aug 2016 15:07:52 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/clef/2016w},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cri/2016,
  title     = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
               CA, USA, March 21-24, 2016},
  publisher = {{AMIA}},
  year      = {2016},
  url       = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827},
  timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/cri/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2016,
  editor    = {Pankaj Jaiswal and
               Robert Hoehndorf and
               Cecilia N. Arighi and
               Austin Meier},
  title     = {Proceedings of the Joint International Conference on Biological Ontology
               and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1747},
  publisher = {CEUR-WS.org},
  year      = {2016},
  url       = {http://ceur-ws.org/Vol-1747},
  urn       = {urn:nbn:de:0074-1747-1},
  timestamp = {Tue, 07 Feb 2017 15:23:44 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/icbo/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ichi/2016,
  title     = {2016 {IEEE} International Conference on Healthcare Informatics, {ICHI}
               2016, Chicago, IL, USA, October 4-7, 2016},
  publisher = {{IEEE} Computer Society},
  year      = {2016},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=7774974},
  isbn      = {978-1-5090-6117-4},
  timestamp = {Tue, 13 Dec 2016 12:20:56 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/lrec/2016,
  editor    = {Nicoletta Calzolari and
               Khalid Choukri and
               Thierry Declerck and
               Sara Goggi and
               Marko Grobelnik and
               Bente Maegaard and
               Joseph Mariani and
               H{\'{e}}l{\`{e}}ne Mazo and
               Asunci{\'{o}}n Moreno and
               Jan Odijk and
               Stelios Piperidis},
  title     = {Proceedings of the Tenth International Conference on Language Resources
               and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016},
  publisher = {European Language Resources Association {(ELRA)}},
  year      = {2016},
  url       = {http://www.lrec-conf.org/lrec2016},
  timestamp = {Tue, 30 Aug 2016 18:49:47 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/lrec/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/semeval/2016,
  editor    = {Steven Bethard and
               Daniel M. Cer and
               Marine Carpuat and
               David Jurgens and
               Preslav Nakov and
               Torsten Zesch},
  title     = {Proceedings of the 10th International Workshop on Semantic Evaluation,
               SemEval@NAACL-HLT 2016, San Diego, CA, USA, June 16-17, 2016},
  publisher = {The Association for Computer Linguistics},
  year      = {2016},
  url       = {http://aclweb.org/anthology/S/S16/},
  isbn      = {978-1-941643-95-2},
  timestamp = {Fri, 30 Sep 2016 13:50:31 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/trec/2016,
  editor    = {Ellen M. Voorhees and
               Angela Ellis},
  title     = {Proceedings of The Twenty-Fifth Text REtrieval Conference, {TREC}
               2016, Gaithersburg, Maryland, USA, November 15-18, 2016},
  volume    = {Special Publication 500-321},
  publisher = {National Institute of Standards and Technology {(NIST)}},
  year      = {2016},
  url       = {http://trec.nist.gov/pubs/trec25/trec2016.html},
  timestamp = {Wed, 08 Mar 2017 13:42:09 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/trec/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/vldb/2016dmah,
  editor    = {Fusheng Wang and
               Lixia Yao and
               Gang Luo},
  title     = {Data Management and Analytics for Medicine and Healthcare - Second
               International Workshop, {DMAH} 2016, Held at {VLDB} 2016, New Delhi,
               India, September 9, 2016, Revised Selected Papers},
  series    = {Lecture Notes in Computer Science},
  volume    = {10186},
  year      = {2017},
  url       = {https://doi.org/10.1007/978-3-319-57741-8},
  doi       = {10.1007/978-3-319-57741-8},
  isbn      = {978-3-319-57740-1},
  timestamp = {Thu, 25 May 2017 00:41:35 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/vldb/2016dmah},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2015,
  title     = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2015},
  publisher = {{AMIA}},
  year      = {2015},
  url       = {http://knowledge.amia.org/59310-amia-1.2741865},
  timestamp = {Thu, 29 Sep 2016 14:58:07 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2015},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2015,
  title     = {Proceedings of the 6th {ACM} Conference on Bioinformatics, Computational
               Biology and Health Informatics, {BCB} 2015, Atlanta, GA, USA, September
               9-12, 2015},
  publisher = {{ACM}},
  year      = {2015},
  url       = {http://dl.acm.org/citation.cfm?id=2808719},
  isbn      = {978-1-4503-3853-0},
  timestamp = {Wed, 14 Oct 2015 10:04:36 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/2015},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2015,
  editor    = {Jun Huan and
               Satoru Miyano and
               Amarda Shehu and
               Xiaohua Tony Hu and
               Bin Ma and
               Sanguthevar Rajasekaran and
               Vijay K. Gombar and
               Matthieu{-}P. Schapranow and
               Illhoi Yoo and
               Jiayu Zhou and
               Brian Chen and
               Vinay Pai and
               Brian G. Pierce},
  title     = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
  publisher = {{IEEE} Computer Society},
  year      = {2015},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=7350074},
  isbn      = {978-1-4673-6799-8},
  timestamp = {Mon, 11 Jan 2016 14:58:36 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2015},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bionlp/2015,
  editor    = {Kevin Bretonnel Cohen and
               Dina Demner{-}Fushman and
               Sophia Ananiadou and
               Jun'ichi Tsujii},
  title     = {Proceedings of the Workshop on Biomedical Natural Language Processing,
               BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015},
  publisher = {Association for Computational Linguistics},
  year      = {2015},
  url       = {http://aclanthology.info/volumes/proceedings-of-bionlp-15},
  timestamp = {Mon, 21 Aug 2017 18:58:14 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/2015},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ichi/2015,
  editor    = {Prabhakaran Balakrishnan and
               Jaideep Srivatsava and
               Wai{-}Tat Fu and
               Sanda M. Harabagiu and
               Fei Wang},
  title     = {2015 International Conference on Healthcare Informatics, {ICHI} 2015,
               Dallas, TX, USA, October 21-23, 2015},
  publisher = {{IEEE} Computer Society},
  year      = {2015},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=7349543},
  isbn      = {978-1-4673-9548-9},
  timestamp = {Tue, 22 Dec 2015 14:32:56 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ichi/2015},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/medinfo/2015,
  editor    = {Indra Neil Sarkar and
               Andrew Georgiou and
               Paulo Mazzoncini de Azevedo Marques},
  title     = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
               Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
               19-23 August 2015},
  series    = {Studies in Health Technology and Informatics},
  volume    = {216},
  publisher = {{IOS} Press},
  year      = {2015},
  isbn      = {978-1-61499-563-0},
  timestamp = {Fri, 14 Aug 2015 13:18:19 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/2015},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2014,
  title     = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 15-19, 2014},
  publisher = {{AMIA}},
  year      = {2014},
  url       = {http://knowledge.amia.org/56638-amia-1.1540970},
  timestamp = {Wed, 28 Sep 2016 16:57:49 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2014},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2014,
  editor    = {Pierre Baldi and
               Wei Wang},
  title     = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
               Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
               USA, September 20-23, 2014},
  publisher = {{ACM}},
  year      = {2014},
  url       = {https://doi.org/10.1145/2649387},
  doi       = {10.1145/2649387},
  isbn      = {978-1-4503-2894-4},
  timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/2014},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bhi/2014,
  title     = {Proceedings of {IEEE-EMBS} International Conference on Biomedical
               and Health Informatics, {BHI} 2014, Valencia, Spain, June 1-4, 2014},
  publisher = {{IEEE}},
  year      = {2014},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6853543},
  timestamp = {Wed, 13 Aug 2014 15:42:12 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bhi/2014},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2014,
  editor    = {Huiru Jane Zheng and
               Werner Dubitzky and
               Xiaohua Hu and
               Jin{-}Kao Hao and
               Daniel P. Berrar and
               Kwang{-}Hyun Cho and
               Yadong Wang and
               David R. Gilbert},
  title     = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014},
  publisher = {{IEEE} Computer Society},
  year      = {2014},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6979782},
  isbn      = {978-1-4799-5669-2},
  timestamp = {Thu, 07 Jan 2016 11:11:21 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2014},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/pakdd/2014-w,
  editor    = {Wen{-}Chih Peng and
               Haixun Wang and
               James Bailey and
               Vincent S. Tseng and
               Tu Bao Ho and
               Zhi{-}Hua Zhou and
               Arbee L. P. Chen},
  title     = {Trends and Applications in Knowledge Discovery and Data Mining - {PAKDD}
               2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD,
               MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA,Tainan, Taiwan,
               May 13-16, 2014. Revised Selected Papers},
  series    = {Lecture Notes in Computer Science},
  volume    = {8643},
  publisher = {Springer},
  year      = {2014},
  url       = {https://doi.org/10.1007/978-3-319-13186-3},
  doi       = {10.1007/978-3-319-13186-3},
  isbn      = {978-3-319-13185-6},
  timestamp = {Thu, 25 May 2017 00:42:24 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/pakdd/2014-w},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2014,
  editor    = {Russ B. Altman and
               A. Keith Dunker and
               Lawrence Hunter and
               Teri E. Klein and
               Marylyn D. Ritchie},
  title     = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
               Hawaii, USA, January 3-7, 2014},
  year      = {2014},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb14/},
  timestamp = {Fri, 05 May 2017 13:13:32 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/psb/2014},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2013,
  title     = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 16-20, 2013},
  publisher = {{AMIA}},
  year      = {2013},
  url       = {http://knowledge.amia.org/amia-55142-a2013e-1.580047},
  timestamp = {Tue, 22 Jul 2014 12:46:55 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2013},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2013,
  editor    = {Guo{-}Zheng Li and
               Sunghoon Kim and
               Michael Hughes and
               Geoffrey J. McLachlan and
               Hongye Sun and
               Xiaohua Hu and
               Habtom W. Ressom and
               Baoyan Liu and
               Michael N. Liebman},
  title     = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
               Shanghai, China, December 18-21, 2013},
  publisher = {{IEEE} Computer Society},
  year      = {2013},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6716150},
  isbn      = {978-1-4799-1309-1},
  timestamp = {Thu, 07 Jan 2016 11:11:41 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2013},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/clef/2013w,
  editor    = {Pamela Forner and
               Roberto Navigli and
               Dan Tufis and
               Nicola Ferro},
  title     = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
               23-26, 2013},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1179},
  publisher = {CEUR-WS.org},
  year      = {2014},
  url       = {http://ceur-ws.org/Vol-1179},
  urn       = {urn:nbn:de:0074-1179-2},
  timestamp = {Mon, 30 May 2016 16:28:37 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/clef/2013w},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/clef/2013bioasq,
  editor    = {Axel{-}Cyrille Ngonga Ngomo and
               George Paliouras},
  title     = {Proceedings of the first Workshop on Bio-Medical Semantic Indexing
               and Question Answering, a Post-Conference Workshop of Conference and
               Labs of the Evaluation Forum 2013 {(CLEF} 2013) , Valencia, Spain,
               September 27th, 2013},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1094},
  publisher = {CEUR-WS.org},
  year      = {2013},
  url       = {http://ceur-ws.org/Vol-1094},
  urn       = {urn:nbn:de:0074-1094-9},
  timestamp = {Mon, 30 May 2016 16:28:37 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/clef/2013bioasq},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2013vdos,
  editor    = {Cui Tao and
               Yongqun He and
               Luca Toldo and
               Sivaram Arabandi and
               Selja Sepp{\"{a}}l{\"{a}} and
               Alan Ruttenberg},
  title     = {Proceedings of the {ICBO2013} Workshops: International Workshop on
               Vaccine and Drug Ontology Studies {(VDOS} 2013), International Workshop
               on Definitions in Ontologies {(DO} 2013), part of the Semantic Trilogy
               2013 , Montreal, Quebec, Canada, July 6th - 12th 2013},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1061},
  publisher = {CEUR-WS.org},
  year      = {2013},
  url       = {http://ceur-ws.org/Vol-1061},
  urn       = {urn:nbn:de:0074-1061-3},
  timestamp = {Mon, 30 May 2016 16:28:38 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icbo/2013vdos},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icsh/2013,
  editor    = {Daniel Zeng and
               Christopher C. Yang and
               Vincent S. Tseng and
               Chunxiao Xing and
               Hsinchun Chen and
               Fei{-}Yue Wang and
               Xiaolong Zheng},
  title     = {Smart Health - International Conference, {ICSH} 2013, Beijing, China,
               August 3-4, 2013. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {8040},
  publisher = {Springer},
  year      = {2013},
  url       = {https://doi.org/10.1007/978-3-642-39844-5},
  doi       = {10.1007/978-3-642-39844-5},
  isbn      = {978-3-642-39843-8},
  timestamp = {Fri, 15 Jun 2018 09:28:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icsh/2013},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/medinfo/2013,
  editor    = {Christoph Ulrich Lehmann and
               Elske Ammenwerth and
               Christian N{\o}hr},
  title     = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
               and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
  series    = {Studies in Health Technology and Informatics},
  volume    = {192},
  publisher = {{IOS} Press},
  year      = {2013},
  isbn      = {978-1-61499-288-2},
  timestamp = {Sat, 07 Sep 2013 18:28:11 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/2013},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/starsem/2013,
  editor    = {Mona T. Diab and
               Timothy Baldwin and
               Marco Baroni},
  title     = {Proceedings of the Second Joint Conference on Lexical and Computational
               Semantics, *SEM 2013, June 13-14, 2013, Atlanta, Georgia, {USA}},
  publisher = {Association for Computational Linguistics},
  year      = {2013},
  url       = {http://aclweb.org/anthology/S/S13/},
  isbn      = {978-1-937284-48-0},
  timestamp = {Wed, 05 Oct 2016 12:02:38 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/starsem/2013},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2012,
  title     = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
               Chicago, Illinois, USA, November 3-7, 2012},
  publisher = {{AMIA}},
  year      = {2012},
  url       = {http://knowledge.amia.org/amia-55142-a2012a-1.636547},
  timestamp = {Fri, 18 Jul 2014 13:08:08 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2012},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2012w,
  title     = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine
               Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012},
  publisher = {{IEEE} Computer Society},
  year      = {2012},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6449399},
  isbn      = {978-1-4673-2746-6},
  timestamp = {Thu, 07 Jan 2016 11:17:03 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2012w},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cgc/2012,
  editor    = {Jianxun Liu and
               Jinjun Chen and
               Guandong Xu},
  title     = {2012 Second International Conference on Cloud and Green Computing,
               {CGC} 2012, Xiangtan, Hunan, China, November 1-3, 2012},
  publisher = {{IEEE} Computer Society},
  year      = {2012},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6380664},
  isbn      = {978-1-4673-3027-5},
  timestamp = {Tue, 05 Feb 2019 11:49:58 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/cgc/2012},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cikm/2012mixhs,
  editor    = {Cui Tao and
               Matt{-}Mouley Bouamrane},
  title     = {Proceedings of the 2nd International Workshop on Managing Interoperability
               and compleXity in Health Systems, MIX-HS, Maui, HI, USA, October 29,
               2012},
  publisher = {{ACM}},
  year      = {2012},
  url       = {http://dl.acm.org/citation.cfm?id=2389672},
  isbn      = {978-1-4503-1710-8},
  timestamp = {Wed, 05 Dec 2012 14:15:04 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/cikm/2012mixhs},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/hisb/2012,
  title     = {2012 {IEEE} Second International Conference on Healthcare Informatics,
               Imaging and Systems Biology, {HISB} 2012, La Jolla, CA, USA, September
               27-28, 2012},
  publisher = {{IEEE} Computer Society},
  year      = {2012},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6366001},
  isbn      = {978-1-4673-4803-4},
  timestamp = {Fri, 23 Dec 2016 11:14:40 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/hisb/2012},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/trec/2012,
  editor    = {Ellen M. Voorhees and
               Lori P. Buckland},
  title     = {Proceedings of The Twenty-First Text REtrieval Conference, {TREC}
               2012, Gaithersburg, Maryland, USA, November 6-9, 2012},
  volume    = {Special Publication 500-298},
  publisher = {National Institute of Standards and Technology {(NIST)}},
  year      = {2012},
  url       = {http://trec.nist.gov/pubs/trec21/t21.proceedings.html},
  timestamp = {Tue, 07 Apr 2015 13:04:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/2012},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2011,
  editor    = {Robert Grossman and
               Andrey Rzhetsky and
               Sun Kim and
               Wei Wang},
  title     = {{ACM} International Conference on Bioinformatics, Computational Biology
               and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
               2011},
  publisher = {{ACM}},
  year      = {2011},
  url       = {http://dl.acm.org/citation.cfm?id=2147805},
  isbn      = {978-1-4503-0796-3},
  timestamp = {Sun, 11 Nov 2012 18:08:50 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bcb/2011},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2011w,
  title     = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
               Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
  publisher = {{IEEE} Computer Society},
  year      = {2011},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6105661},
  isbn      = {978-1-4577-1612-6},
  timestamp = {Thu, 07 Jan 2016 11:16:38 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2011w},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icica/2011-1,
  editor    = {Chunfeng Liu and
               Jincai Chang and
               Aimin Yang},
  title     = {Information Computing and Applications - Second International Conference,
               {ICICA} 2011, Qinhuangdao, China, October 28-31, 2011. Proceedings,
               Part {I}},
  series    = {Communications in Computer and Information Science},
  volume    = {243},
  publisher = {Springer},
  year      = {2011},
  url       = {https://doi.org/10.1007/978-3-642-27503-6},
  doi       = {10.1007/978-3-642-27503-6},
  isbn      = {978-3-642-27502-9},
  timestamp = {Wed, 29 Aug 2018 17:16:57 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icica/2011-1},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/trec/2011,
  editor    = {Ellen M. Voorhees and
               Lori P. Buckland},
  title     = {Proceedings of The Twentieth Text REtrieval Conference, {TREC} 2011,
               Gaithersburg, Maryland, USA, November 15-18, 2011},
  volume    = {Special Publication 500-296},
  publisher = {National Institute of Standards and Technology {(NIST)}},
  year      = {2011},
  url       = {http://trec.nist.gov/pubs/trec20/t20.proceedings.html},
  timestamp = {Tue, 07 Apr 2015 13:04:05 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/2011},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ihi/2010,
  editor    = {Tiffany C. Veinot and
               {\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
               Gang Luo and
               Henrique Andrade and
               Neil R. Smalheiser},
  title     = {{ACM} International Health Informatics Symposium, {IHI} 2010, Arlington,
               VA, USA, November 11 - 12, 2010, Proceedings},
  publisher = {{ACM}},
  year      = {2010},
  isbn      = {978-1-4503-0030-8},
  timestamp = {Fri, 25 Feb 2011 21:41:00 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ihi/2010},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/smbm/2010,
  editor    = {Nigel Collier and
               Udo Hahn and
               Dietrich Rebholz{-}Schuhmann and
               Fabio Rinaldi and
               Sampo Pyysalo},
  title     = {Proceedings of the Fourth International Symposium for Semantic Mining
               in Biomedicine, Cambridge, United Kingdom, October, 2010},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {714},
  publisher = {CEUR-WS.org},
  year      = {2011},
  url       = {http://ceur-ws.org/Vol-714},
  urn       = {urn:nbn:de:0074-714-1},
  timestamp = {Tue, 13 Feb 2018 15:52:34 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/smbm/2010},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2009,
  title     = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
               San Francisco, CA, USA, November 14-18, 2009},
  publisher = {{AMIA}},
  year      = {2009},
  url       = {http://knowledge.amia.org/amia-55142-a2009a-1.626575},
  timestamp = {Tue, 22 Jul 2014 10:27:12 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2009},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/csee/2009,
  title     = {Proceedings 22nd Conference on Software Engineering Education and
               Training, {CSEET} 2009, Hyderabad, India, 17-20 Feb. 2009},
  publisher = {{IEEE} Computer Society},
  year      = {2009},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=4812651},
  isbn      = {978-0-7695-3539-5},
  timestamp = {Wed, 18 Nov 2015 15:17:54 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/csee/2009},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/csie/2009,
  editor    = {Mark Burgin and
               Masud H. Chowdhury and
               Chan H. Ham and
               Simone A. Ludwig and
               Weilian Su and
               Sumanth Yenduri},
  title     = {{CSIE} 2009, 2009 {WRI} World Congress on Computer Science and Information
               Engineering, March 31 - April 2, 2009, Los Angeles, California, USA,
               7 Volumes},
  publisher = {{IEEE} Computer Society},
  year      = {2009},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=5170260},
  isbn      = {978-0-7695-3507-4},
  timestamp = {Wed, 06 Aug 2014 18:21:46 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/csie/2009},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ijcbs/2009,
  editor    = {Joe Zhang and
               Guo{-}Zheng Li and
               Jack Y. Yang},
  title     = {International Joint Conferences on Bioinformatics, Systems Biology
               and Intelligent Computing, {IJCBS} 2009, Shanghai, China, 3-5 August
               2009},
  publisher = {{IEEE} Computer Society},
  year      = {2009},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=5260404},
  isbn      = {978-0-7695-3739-9},
  timestamp = {Fri, 23 Dec 2016 13:00:39 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/ijcbs/2009},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2008,
  title     = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 8-12, 2008},
  publisher = {{AMIA}},
  year      = {2008},
  url       = {http://knowledge.amia.org/amia-55142-a2008a-1.625176},
  timestamp = {Wed, 23 Jul 2014 20:53:32 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2008},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibm/2008,
  editor    = {Xue{-}wen Chen and
               Xiaohua Hu and
               Sun Kim},
  title     = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
  publisher = {{IEEE} Computer Society},
  year      = {2008},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=4684854},
  isbn      = {978-0-7695-3452-7},
  timestamp = {Fri, 08 Jul 2016 07:22:52 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bibm/2008},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/biocomp/2008,
  editor    = {Hamid R. Arabnia and
               Mary Qu Yang and
               Jack Y. Yang},
  title     = {International Conference on Bioinformatics {\&} Computational
               Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
               2 Volumes},
  publisher = {{CSREA} Press},
  year      = {2008},
  isbn      = {1-60132-055-8},
  timestamp = {Fri, 06 Feb 2009 11:52:50 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/biocomp/2008},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/2009bl,
  editor    = {Christian Blaschke and
               Hagit Shatkay},
  title     = {Linking Literature, Information, and Knowledge for Biology - Workshop
               of the BioLink Special Interest Group, {ISMB/ECCB} 2009, Stockholm,
               Sweden, June 28-29, 2009, Revised Selected Papers},
  series    = {Lecture Notes in Computer Science},
  volume    = {6004},
  publisher = {Springer},
  year      = {2010},
  url       = {https://doi.org/10.1007/978-3-642-13131-8},
  doi       = {10.1007/978-3-642-13131-8},
  isbn      = {978-3-642-13130-1},
  timestamp = {Fri, 22 Jun 2018 07:31:28 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ismb/2009bl},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2007,
  title     = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
               Chicago, IL, USA, November 10-14, 2007},
  publisher = {{AMIA}},
  year      = {2007},
  url       = {http://knowledge.amia.org/amia-55142-a2007a-1.623841},
  timestamp = {Thu, 24 Jul 2014 17:23:55 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2007},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibe/2007,
  title     = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
               and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
               School, Boston, MA, {USA}},
  publisher = {{IEEE} Computer Society},
  year      = {2007},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=4375520},
  isbn      = {978-1-4244-1509-0},
  timestamp = {Fri, 12 Dec 2014 14:22:15 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibe/2007},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icdm/2007w,
  title     = {Workshops Proceedings of the 7th {IEEE} International Conference on
               Data Mining {(ICDM} 2007), October 28-31, 2007, Omaha, Nebraska, {USA}},
  publisher = {{IEEE} Computer Society},
  year      = {2007},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=4476629},
  isbn      = {0-7695-3033-8},
  timestamp = {Tue, 16 Sep 2014 18:00:18 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icdm/2007w},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icse/2007c,
  title     = {29th International Conference on Software Engineering {(ICSE} 2007),
               Minneapolis, MN, USA, May 20-26, 2007, Companion Volume},
  publisher = {{IEEE} Computer Society},
  year      = {2007},
  timestamp = {Tue, 12 Jun 2007 16:07:23 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/icse/2007c},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/lbm/2007s,
  editor    = {Christopher J. O. Baker and
               Jian Su},
  title     = {Short Paper Proceedings of the 2nd International Symposium on Languages
               in Biology and Medicine {(LBM} 2007), Singapore, December 6-7, 2007},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {319},
  publisher = {CEUR-WS.org},
  year      = {2008},
  url       = {http://ceur-ws.org/Vol-319},
  urn       = {urn:nbn:de:0074-319-9},
  timestamp = {Mon, 30 May 2016 16:57:35 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/lbm/2007s},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/oss/2007,
  editor    = {Joseph Feller and
               Brian Fitzgerald and
               Walt Scacchi and
               Alberto Sillitti},
  title     = {Open Source Development, Adoption and Innovation, {IFIP} Working Group
               2.13 on Open Source Software, June 11-14, 2007, Limerick, Ireland},
  series    = {{IFIP}},
  volume    = {234},
  publisher = {Springer},
  year      = {2007},
  isbn      = {978-0-387-72485-0},
  timestamp = {Thu, 18 Oct 2018 16:08:21 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/oss/2007},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/trec/2007,
  editor    = {Ellen M. Voorhees and
               Lori P. Buckland},
  title     = {Proceedings of The Sixteenth Text REtrieval Conference, {TREC} 2007,
               Gaithersburg, Maryland, USA, November 5-9, 2007},
  volume    = {Special Publication 500-274},
  publisher = {National Institute of Standards and Technology {(NIST)}},
  year      = {2007},
  url       = {http://trec.nist.gov/pubs/trec16/t16\_proceedings.html},
  timestamp = {Tue, 07 Apr 2015 13:04:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/2007},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/pakdd/2006kdll,
  editor    = {Eric G. Bremer and
               J{\"{o}}rg Hakenberg and
               Eui{-}Hong Han and
               Daniel P. Berrar and
               Werner Dubitzky},
  title     = {Knowledge Discovery in Life Science Literature, {PAKDD} 2006 International
               Workshop, {KDLL} 2006, Singapore, April 9, 2006, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {3886},
  publisher = {Springer},
  year      = {2006},
  url       = {https://doi.org/10.1007/11683568},
  doi       = {10.1007/11683568},
  isbn      = {3-540-32809-2},
  timestamp = {Mon, 05 Jun 2017 12:41:25 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/pakdd/2006kdll},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/acl/2005,
  editor    = {Kevin Knight and
               Hwee Tou Ng and
               Kemal Oflazer},
  title     = {{ACL} 2005, 43rd Annual Meeting of the Association for Computational
               Linguistics, Proceedings of the Conference, 25-30 June 2005, University
               of Michigan, {USA}},
  publisher = {The Association for Computer Linguistics},
  year      = {2005},
  url       = {http://aclweb.org/anthology/P/P05/},
  timestamp = {Thu, 17 Aug 2017 17:55:42 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/acl/2005},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/trec/2005,
  editor    = {Ellen M. Voorhees and
               Lori P. Buckland},
  title     = {Proceedings of the Fourteenth Text REtrieval Conference, {TREC} 2005,
               Gaithersburg, Maryland, USA, November 15-18, 2005},
  volume    = {Special Publication 500-266},
  publisher = {National Institute of Standards and Technology {(NIST)}},
  year      = {2005},
  url       = {http://trec.nist.gov/pubs/trec14/t14\_proceedings.html},
  timestamp = {Tue, 07 Apr 2015 13:04:04 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/2005},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bibe/2004,
  title     = {4th {IEEE} International Symposium on BioInformatics and BioEngineering
               {(BIBE} 2004), 19-21 March 2004, Taichung, Taiwan},
  publisher = {{IEEE} Computer Society},
  year      = {2004},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=9200},
  isbn      = {0-7695-2173-8},
  timestamp = {Fri, 12 Dec 2014 14:22:15 +0100},
  biburl    = {https://dblp.org/rec/bib/conf/bibe/2004},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ispan/2004,
  title     = {7th International Symposium on Parallel Architectures, Algorithms,
               and Networks {(I-SPAN} 2004), 10-12 May 2004, Hong Kong, SAR, China},
  publisher = {{IEEE} Computer Society},
  year      = {2004},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=9103},
  isbn      = {0-7695-2135-5},
  timestamp = {Fri, 27 May 2016 11:53:57 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/ispan/2004},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/medinfo/2004,
  editor    = {Marius Fieschi and
               Enrico W. Coiera and
               Jack Yu{-}Chan Li},
  title     = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
               Informatics, San Francisco, California, USA, September 7-11, 2004},
  series    = {Studies in Health Technology and Informatics},
  volume    = {107},
  publisher = {{IOS} Press},
  year      = {2004},
  url       = {http://ebooks.iospress.nl/volume/medinfo-2004},
  isbn      = {978-1-58603-444-3},
  timestamp = {Fri, 26 May 2017 16:02:55 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/medinfo/2004},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2004,
  editor    = {Russ B. Altman and
               A. Keith Dunker and
               Lawrence Hunter and
               Tiffany A. Jung and
               Teri E. Klein},
  title     = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
               6-10 January 2004},
  publisher = {World Scientific},
  year      = {2004},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb04/},
  isbn      = {981-238-598-3},
  timestamp = {Fri, 05 May 2017 13:11:14 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/psb/2004},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/trec/2004,
  editor    = {Ellen M. Voorhees and
               Lori P. Buckland},
  title     = {Proceedings of the Thirteenth Text REtrieval Conference, {TREC} 2004,
               Gaithersburg, Maryland, USA, November 16-19, 2004},
  volume    = {Special Publication 500-261},
  publisher = {National Institute of Standards and Technology {(NIST)}},
  year      = {2004},
  url       = {http://trec.nist.gov/pubs/trec13/t13\_proceedings.html},
  timestamp = {Tue, 07 Apr 2015 13:04:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/trec/2004},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/psb/2003,
  editor    = {Russ B. Altman and
               A. Keith Dunker and
               Lawrence Hunter and
               Teri E. Klein},
  title     = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
               Lihue, Hawaii, USA, January 3-7, 2003},
  year      = {2003},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb2003/},
  timestamp = {Mon, 22 Jun 2015 17:24:45 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/psb/2003},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2002,
  title     = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
               San Antonio, TX, USA, November 9-13, 2002},
  publisher = {{AMIA}},
  year      = {2002},
  url       = {http://knowledge.amia.org/amia-55142-a2002a-1.610020},
  timestamp = {Tue, 05 Aug 2014 16:48:31 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2002},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2001,
  title     = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
               Washington, DC, USA, November 3-7, 2001},
  publisher = {{AMIA}},
  year      = {2001},
  url       = {http://knowledge.amia.org/amia-55142-a2001a-1.597057},
  timestamp = {Wed, 06 Aug 2014 18:50:51 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2001},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2000,
  title     = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
               Los Angeles, CA, USA, November 4-8, 2000},
  publisher = {{AMIA}},
  year      = {2000},
  url       = {http://knowledge.amia.org/amia-55142-a2000a-1.606968},
  timestamp = {Thu, 07 Aug 2014 20:46:35 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2000},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/iscas/1999,
  title     = {Proceedings of the 1999 International Symposium on Circuits and Systems,
               {ISCAS} 1999, Orlando, Florida, USA, May 30 - June 2, 1999},
  publisher = {{IEEE}},
  year      = {1999},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6311},
  isbn      = {0-7803-5471-0},
  timestamp = {Fri, 20 May 2016 10:19:45 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/iscas/1999},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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