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ORCIDBibTeX records: Zexian Liu
@article{DBLP:journals/jota/LiuNLS24,
author = {Zexian Liu and
Yan Ni and
Hongwei Liu and
Wumei Sun},
title = {A New Subspace Minimization Conjugate Gradient Method for Unconstrained
Minimization},
journal = {J. Optim. Theory Appl.},
volume = {200},
number = {2},
pages = {820--851},
year = {2024},
url = {https://doi.org/10.1007/s10957-023-02325-x},
doi = {10.1007/S10957-023-02325-X},
timestamp = {Tue, 13 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jota/LiuNLS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YuLCLZLJZZKL23,
author = {Kai Yu and
Zekun Liu and
Haoyang Cheng and
Shihua Li and
Qingfeng Zhang and
Jia Liu and
Huai{-}Qiang Ju and
Zhixiang Zuo and
Qi Zhao and
Shiyang Kang and
Zexian Liu},
title = {dSCOPE: a software to detect sequences critical for liquid-liquid
phase separation},
journal = {Briefings Bioinform.},
volume = {24},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac550},
doi = {10.1093/BIB/BBAC550},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/YuLCLZLJZZKL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/LiuWZLZGJSLCW23,
author = {Zexian Liu and
Panqin Wang and
Qingfeng Zhang and
Shihua Li and
Yuxin Zhang and
Yutong Guo and
Chongchong Jia and
Tian Shao and
Lin Li and
Han Cheng and
Zhenlong Wang},
title = {iHypoxia: An Integrative Database of Protein Expression Dynamics in
Response to Hypoxia in Animals},
journal = {Genom. Proteom. Bioinform.},
volume = {21},
number = {2},
pages = {267--277},
year = {2023},
url = {https://doi.org/10.1016/j.gpb.2022.12.001},
doi = {10.1016/J.GPB.2022.12.001},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/LiuWZLZGJSLCW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/na/SunLL23,
author = {Wumei Sun and
Hongwei Liu and
Zexian Liu},
title = {A regularized limited memory subspace minimization conjugate gradient
method for unconstrained optimization},
journal = {Numer. Algorithms},
volume = {94},
number = {4},
pages = {1919--1948},
year = {2023},
url = {https://doi.org/10.1007/s11075-023-01559-0},
doi = {10.1007/S11075-023-01559-0},
timestamp = {Mon, 27 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/na/SunLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YuWZLZWZZLXL23,
author = {Kai Yu and
Ye Wang and
Yongqiang Zheng and
Zekun Liu and
Qingfeng Zhang and
Siyu Wang and
Qi Zhao and
Xiaolong Zhang and
Xiaoxing Li and
Rui{-}Hua Xu and
Zexian Liu},
title = {qPTM: an updated database for {PTM} dynamics in human, mouse, rat
and yeast},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {479--487},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac820},
doi = {10.1093/NAR/GKAC820},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YuWZLZWZZLXL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiangLYHCLG22,
author = {Jing J. Liang and
Zong{-}Wei Li and
Cai{-}Tong Yue and
Zhuo Hu and
Han Cheng and
Zexian Liu and
Weifeng Guo},
title = {Multi-modal optimization to identify personalized biomarkers for disease
prediction of individual patients with cancer},
journal = {Briefings Bioinform.},
volume = {23},
number = {5},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac254},
doi = {10.1093/BIB/BBAC254},
timestamp = {Fri, 19 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiangLYHCLG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/coap/LiuWL22,
author = {Hongwei Liu and
Ting Wang and
Zexian Liu},
title = {Some modified fast iterative shrinkage thresholding algorithms with
a new adaptive non-monotone stepsize strategy for nonsmooth and convex
minimization problems},
journal = {Comput. Optim. Appl.},
volume = {83},
number = {2},
pages = {651--691},
year = {2022},
url = {https://doi.org/10.1007/s10589-022-00396-6},
doi = {10.1007/S10589-022-00396-6},
timestamp = {Mon, 10 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/coap/LiuWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/na/SunLL22,
author = {Wumei Sun and
Hongwei Liu and
Zexian Liu},
title = {Several accelerated subspace minimization conjugate gradient methods
based on regularization model and convergence rate analysis for nonconvex
problems},
journal = {Numer. Algorithms},
volume = {91},
number = {4},
pages = {1677--1719},
year = {2022},
url = {https://doi.org/10.1007/s11075-022-01319-6},
doi = {10.1007/S11075-022-01319-6},
timestamp = {Tue, 22 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/na/SunLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XueZWCJCSGWLC22,
author = {Han Xue and
Qingfeng Zhang and
Panqin Wang and
Bijin Cao and
Chongchong Jia and
Ben Cheng and
Yuhua Shi and
Weifeng Guo and
Zhenlong Wang and
Zexian Liu and
Han Cheng},
title = {qPTMplants: an integrative database of quantitative post-translational
modifications in plants},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1491--1499},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab945},
doi = {10.1093/NAR/GKAB945},
timestamp = {Tue, 26 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/XueZWCJCSGWLC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/rairo/LiuCL22,
author = {Zexian Liu and
Wangli Chu and
Hongwei Liu},
title = {An efficient gradient method with approximately optimal stepsizes
based on regularization models for unconstrained optimization},
journal = {{RAIRO} Oper. Res.},
volume = {56},
number = {4},
pages = {2403--2424},
year = {2022},
url = {https://doi.org/10.1051/ro/2022107},
doi = {10.1051/RO/2022107},
timestamp = {Wed, 14 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/rairo/LiuCL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangYLZZZLCLL21,
author = {Qingfeng Zhang and
Kai Yu and
Shihua Li and
Xiaolong Zhang and
Qi Zhao and
Xia Zhao and
Zekun Liu and
Han Cheng and
Zexian Liu and
Xiaoxing Li},
title = {gutMEGA: a database of the human gut MEtaGenome Atlas},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa082},
doi = {10.1093/BIB/BBAA082},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangYLZZZLCLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZLCXWSLCW21,
author = {Panqin Wang and
Qingfeng Zhang and
Shihua Li and
Ben Cheng and
Han Xue and
Zhen Wei and
Tian Shao and
Zexian Liu and
Han Cheng and
Zhenlong Wang},
title = {iCysMod: an integrative database for protein cysteine modifications
in eukaryotes},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa400},
doi = {10.1093/BIB/BBAA400},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangZLCXWSLCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiuZWCZLC21,
author = {Bo Liu and
Qingfeng Zhang and
Jingou Wang and
Shumin Cao and
Zhiyuan Zhou and
Zexian Liu and
Han Cheng},
title = {iCAV: an integrative database of cancer-associated viruses},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab079},
doi = {10.1093/DATABASE/BAAB079},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/LiuZWCZLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jota/SunLL21,
author = {Wumei Sun and
Hongwei Liu and
Zexian Liu},
title = {A Class of Accelerated Subspace Minimization Conjugate Gradient Methods},
journal = {J. Optim. Theory Appl.},
volume = {190},
number = {3},
pages = {811--840},
year = {2021},
url = {https://doi.org/10.1007/s10957-021-01897-w},
doi = {10.1007/S10957-021-01897-W},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jota/SunLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/na/ZhaoLL21,
author = {Ting Zhao and
Hongwei Liu and
Zexian Liu},
title = {New subspace minimization conjugate gradient methods based on regularization
model for unconstrained optimization},
journal = {Numer. Algorithms},
volume = {87},
number = {4},
pages = {1501--1534},
year = {2021},
url = {https://doi.org/10.1007/s11075-020-01017-1},
doi = {10.1007/S11075-020-01017-1},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/na/ZhaoLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YuZLDGZCLL20,
author = {Kai Yu and
Qingfeng Zhang and
Zekun Liu and
Yimeng Du and
Xinjiao Gao and
Qi Zhao and
Han Cheng and
Xiaoxing Li and
Zexian Liu},
title = {Deep learning based prediction of reversible HAT/HDAC-specific lysine
acetylation},
journal = {Briefings Bioinform.},
volume = {21},
number = {5},
pages = {1798--1805},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz107},
doi = {10.1093/BIB/BBZ107},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YuZLDGZCLL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoSLZLZLRZ20,
author = {Qi Zhao and
Yu Sun and
Zekun Liu and
Hongwan Zhang and
Xingyang Li and
Kaiyu Zhu and
Zexian Liu and
Jian Ren and
Zhixiang Zuo},
title = {CrossICC: iterative consensus clustering of cross-platform gene expression
data without adjusting batch effect},
journal = {Briefings Bioinform.},
volume = {21},
number = {5},
pages = {1818--1824},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz116},
doi = {10.1093/BIB/BBZ116},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoSLZLZLRZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cam/DiaoLL20,
author = {Xinliu Diao and
Hongwei Liu and
Zexian Liu},
title = {A new subspace minimization conjugate gradient method based on modified
secant equation for unconstrained optimization},
journal = {Comput. Appl. Math.},
volume = {39},
number = {4},
year = {2020},
url = {https://doi.org/10.1007/s40314-020-01301-9},
doi = {10.1007/S40314-020-01301-9},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cam/DiaoLL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/coap/LiuLD20,
author = {Zexian Liu and
Hongwei Liu and
Yu{-}Hong Dai},
title = {An improved Dai-Kou conjugate gradient algorithm for unconstrained
optimization},
journal = {Comput. Optim. Appl.},
volume = {75},
number = {1},
pages = {145--167},
year = {2020},
url = {https://doi.org/10.1007/s10589-019-00143-4},
doi = {10.1007/S10589-019-00143-4},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/coap/LiuLD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhuCPWZNFZLZ20,
author = {Liya Zhu and
Han Cheng and
Guoqing Peng and
Shuansuo Wang and
Zhiguo Zhang and
Erdong Ni and
Xiangdong Fu and
Chuxiong Zhuang and
Zexian Liu and
Hai Zhou},
title = {Ubiquitinome Profiling Reveals the Landscape of Ubiquitination Regulation
in Rice Young Panicles},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {3},
pages = {305--320},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2019.01.005},
doi = {10.1016/J.GPB.2019.01.005},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ZhuCPWZNFZLZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cam/LiLL19,
author = {Yufei Li and
Zexian Liu and
Hongwei Liu},
title = {A subspace minimization conjugate gradient method based on conic model
for unconstrained optimization},
journal = {Comput. Appl. Math.},
volume = {38},
number = {1},
year = {2019},
url = {https://doi.org/10.1007/s40314-019-0779-7},
doi = {10.1007/S40314-019-0779-7},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cam/LiLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cam/LiuLW19,
author = {Zexian Liu and
Hongwei Liu and
Xiping Wang},
title = {Accelerated augmented Lagrangian method for total variation minimization},
journal = {Comput. Appl. Math.},
volume = {38},
number = {2},
year = {2019},
url = {https://doi.org/10.1007/s40314-019-0787-7},
doi = {10.1007/S40314-019-0787-7},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cam/LiuLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcm/WangLL19,
author = {Ting Wang and
Zexian Liu and
Hongwei Liu},
title = {A new subspace minimization conjugate gradient method based on tensor
model for unconstrained optimization},
journal = {Int. J. Comput. Math.},
volume = {96},
number = {10},
pages = {1924--1942},
year = {2019},
url = {https://doi.org/10.1080/00207160.2018.1542136},
doi = {10.1080/00207160.2018.1542136},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcm/WangLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jota/LiuL19,
author = {Hongwei Liu and
Zexian Liu},
title = {An Efficient Barzilai-Borwein Conjugate Gradient Method for Unconstrained
Optimization},
journal = {J. Optim. Theory Appl.},
volume = {180},
number = {3},
pages = {879--906},
year = {2019},
url = {https://doi.org/10.1007/s10957-018-1393-3},
doi = {10.1007/S10957-018-1393-3},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jota/LiuL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jota/LiuL19a,
author = {Zexian Liu and
Hongwei Liu},
title = {An Efficient Gradient Method with Approximately Optimal Stepsize Based
on Tensor Model for Unconstrained Optimization},
journal = {J. Optim. Theory Appl.},
volume = {181},
number = {2},
pages = {608--633},
year = {2019},
url = {https://doi.org/10.1007/s10957-019-01475-1},
doi = {10.1007/S10957-019-01475-1},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jota/LiuL19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YuZLZZWWJLLX19,
author = {Kai Yu and
Qingfeng Zhang and
Zekun Liu and
Qi Zhao and
Xiaolong Zhang and
Yan Wang and
Zi{-}Xian Wang and
Ying Jin and
Xiaoxing Li and
Zexian Liu and
Rui{-}Hua Xu},
title = {qPhos: a database of protein phosphorylation dynamics in humans},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D451--D458},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1052},
doi = {10.1093/NAR/GKY1052},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YuZLZZWWJLLX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/oms/DongLLL19,
author = {Xiao{-}Liang Dong and
Zexian Liu and
Hong{-}Wei Liu and
Xiang{-}Li Li},
title = {An efficient adaptive three-term extension of the Hestenes-Stiefel
conjugate gradient method},
journal = {Optim. Methods Softw.},
volume = {34},
number = {3},
pages = {546--559},
year = {2019},
url = {https://doi.org/10.1080/10556788.2017.1418870},
doi = {10.1080/10556788.2017.1418870},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/oms/DongLLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcam/LiuL18,
author = {Zexian Liu and
Hongwei Liu},
title = {Several efficient gradient methods with approximate optimal stepsizes
for large scale unconstrained optimization},
journal = {J. Comput. Appl. Math.},
volume = {328},
pages = {400--413},
year = {2018},
url = {https://doi.org/10.1016/j.cam.2017.07.035},
doi = {10.1016/J.CAM.2017.07.035},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcam/LiuL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/na/LiuL18,
author = {Zexian Liu and
Hongwei Liu},
title = {An efficient gradient method with approximate optimal stepsize for
large-scale unconstrained optimization},
journal = {Numer. Algorithms},
volume = {78},
number = {1},
pages = {21--39},
year = {2018},
url = {https://doi.org/10.1007/s11075-017-0365-2},
doi = {10.1007/S11075-017-0365-2},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/na/LiuL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/na/LiLL18,
author = {Ming Li and
Hongwei Liu and
Zexian Liu},
title = {A new subspace minimization conjugate gradient method with nonmonotone
line search for unconstrained optimization},
journal = {Numer. Algorithms},
volume = {79},
number = {1},
pages = {195--219},
year = {2018},
url = {https://doi.org/10.1007/s11075-017-0434-6},
doi = {10.1007/S11075-017-0434-6},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/na/LiLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ol/LiuLD18,
author = {Hongwei Liu and
Zexian Liu and
Xiaoliang Dong},
title = {A new adaptive Barzilai and Borwein method for unconstrained optimization},
journal = {Optim. Lett.},
volume = {12},
number = {4},
pages = {845--873},
year = {2018},
url = {https://doi.org/10.1007/s11590-017-1150-9},
doi = {10.1007/S11590-017-1150-9},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ol/LiuLD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PanWZWURLX15,
author = {Zhicheng Pan and
Bangshan Wang and
Ying Zhang and
Yongbo Wang and
Shahid Ullah and
Jian Ren and
Zexian Liu and
Yu Xue},
title = {dbPSP: a curated database for protein phosphorylation sites in prokaryotes},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav031},
doi = {10.1093/DATABASE/BAV031},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PanWZWURLX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuangMWPRLX15,
author = {Zhengnan Huang and
Lili Ma and
Yongbo Wang and
Zhicheng Pan and
Jian Ren and
Zexian Liu and
Yu Xue},
title = {MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere
and spindle},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {328--334},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1125},
doi = {10.1093/NAR/GKU1125},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuangMWPRLX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChengDWRLX14,
author = {Han Cheng and
Wankun Deng and
Yongbo Wang and
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bibsource = {dblp computer science bibliography, https://dblp.org}
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