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ORCIDBibTeX records: Thomas Madej
@article{DBLP:journals/nar/SayersBBCCCCFKK22,
author = {Eric W. Sayers and
Evan E. Bolton and
J. Rodney Brister and
Kathi Canese and
Jessica Chan and
Donald C. Comeau and
Ryan Connor and
Kathryn Funk and
Chris Kelly and
Sunghwan Kim and
Tom Madej and
Aron Marchler{-}Bauer and
Christopher J. Lanczycki and
Stacy Lathrop and
Zhiyong Lu and
Fran{\c{c}}oise Thibaud{-}Nissen and
Terence D. Murphy and
Lon Phan and
Yuri Skripchenko and
Tony Tse and
Jiyao Wang and
Rebecca Williams and
Barton W. Trawick and
Kim D. Pruitt and
Stephen T. Sherry},
title = {Database resources of the national center for biotechnology information},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {20--26},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1112},
doi = {10.1093/NAR/GKAB1112},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SayersBBCCCCFKK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYZLGMPWLMWB20,
author = {Jiyao Wang and
Philippe Youkharibache and
Dachuan Zhang and
Christopher J. Lanczycki and
Renata C. Geer and
Thomas Madej and
Lon Phan and
Minghong Ward and
Shennan Lu and
Gabriele H. Marchler and
Yanli Wang and
Stephen H. Bryant and
Lewis Y. Geer and
Aron Marchler{-}Bauer},
title = {iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations
of biomolecular structures},
journal = {Bioinform.},
volume = {36},
number = {1},
pages = {131--135},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz502},
doi = {10.1093/BIOINFORMATICS/BTZ502},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYZLGMPWLMWB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MadejLZTGMB14,
author = {Thomas Madej and
Christopher J. Lanczycki and
Dachuan Zhang and
Paul A. Thiessen and
Renata C. Geer and
Aron Marchler{-}Bauer and
Stephen H. Bryant},
title = {{MMDB} and {VAST+:} tracking structural similarities between macromolecular
complexes},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {297--303},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1208},
doi = {10.1093/NAR/GKT1208},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MadejLZTGMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SayersBBBBCCCDFFFGHKKLLLMMMMMKOPPPSSSSSSSSTWWWYY12,
author = {Eric W. Sayers and
Tanya Barrett and
Dennis A. Benson and
Evan Bolton and
Stephen H. Bryant and
Kathi Canese and
Vyacheslav Chetvernin and
Deanna M. Church and
Michael DiCuccio and
Scott Federhen and
Michael Feolo and
Ian M. Fingerman and
Lewis Y. Geer and
Wolfgang Helmberg and
Yuri Kapustin and
Sergey Krasnov and
David Landsman and
David J. Lipman and
Zhiyong Lu and
Thomas L. Madden and
Tom Madej and
Donna R. Maglott and
Aron Marchler{-}Bauer and
Vadim Miller and
Ilene Karsch{-}Mizrachi and
James Ostell and
Anna R. Panchenko and
Lon Phan and
Kim D. Pruitt and
Gregory D. Schuler and
Edwin Sequeira and
Stephen T. Sherry and
Martin Shumway and
Karl Sirotkin and
Douglas J. Slotta and
Alexandre Souvorov and
Grigory Starchenko and
Tatiana A. Tatusova and
Lukas Wagner and
Yanli Wang and
W. John Wilbur and
Eugene Yaschenko and
Jian Ye},
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {13--25},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1184},
doi = {10.1093/NAR/GKR1184},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SayersBBBBCCCDFFFGHKKLLLMMMMMKOPPPSSSSSSSSTWWWYY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MadejAFGGLLLMPCTWZB12,
author = {Thomas Madej and
Kenneth J. Addess and
Jessica H. Fong and
Lewis Y. Geer and
Renata C. Geer and
Christopher J. Lanczycki and
Chunlei Liu and
Shennan Lu and
Aron Marchler{-}Bauer and
Anna R. Panchenko and
Jie Chen and
Paul A. Thiessen and
Yanli Wang and
Dachuan Zhang and
Stephen H. Bryant},
title = {{MMDB:} 3D structures and macromolecular interactions},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {461--464},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1162},
doi = {10.1093/NAR/GKR1162},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MadejAFGGLLLMPCTWZB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShoemakerZTTFMBMP12,
author = {Benjamin A. Shoemaker and
Dachuan Zhang and
Manoj Tyagi and
Ratna R. Thangudu and
Jessica H. Fong and
Aron Marchler{-}Bauer and
Stephen H. Bryant and
Thomas Madej and
Anna R. Panchenko},
title = {{IBIS} (Inferred Biomolecular Interaction Server) reports, predicts
and integrates multiple types of conserved interactions for proteins},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {834--840},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr997},
doi = {10.1093/NAR/GKR997},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShoemakerZTTFMBMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SayersBBBBCCCDFFFGHKLLLMMMMMMOPPPSSSSSSSSTWWWYY11,
author = {Eric W. Sayers and
Tanya Barrett and
Dennis A. Benson and
Evan Bolton and
Stephen H. Bryant and
Kathi Canese and
Vyacheslav Chetvernin and
Deanna M. Church and
Michael DiCuccio and
Scott Federhen and
Michael Feolo and
Ian M. Fingerman and
Lewis Y. Geer and
Wolfgang Helmberg and
Yuri Kapustin and
David Landsman and
David J. Lipman and
Zhiyong Lu and
Thomas L. Madden and
Tom Madej and
Donna R. Maglott and
Aron Marchler{-}Bauer and
Vadim Miller and
Ilene Mizrachi and
James Ostell and
Anna R. Panchenko and
Lon Phan and
Kim D. Pruitt and
Gregory D. Schuler and
Edwin Sequeira and
Stephen T. Sherry and
Martin Shumway and
Karl Sirotkin and
Douglas J. Slotta and
Alexandre Souvorov and
Grigory Starchenko and
Tatiana A. Tatusova and
Lukas Wagner and
Yanli Wang and
W. John Wilbur and
Eugene Yaschenko and
Jian Ye},
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {38--51},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1172},
doi = {10.1093/NAR/GKQ1172},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SayersBBBBCCCDFFFGHKLLLMMMMMMOPPPSSSSSSSSTWWWYY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThanguduTSBPM10,
author = {Ratna R. Thangudu and
Manoj Tyagi and
Benjamin A. Shoemaker and
Stephen H. Bryant and
Anna R. Panchenko and
Thomas Madej},
title = {Knowledge-based annotation of small molecule binding sites in proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {365},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-365},
doi = {10.1186/1471-2105-11-365},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThanguduTSBPM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SayersBBBBCCCDFFGHKLLLMMMMMMOPPSSSSSSSSTWWWYY10,
author = {Eric W. Sayers and
Tanya Barrett and
Dennis A. Benson and
Evan Bolton and
Stephen H. Bryant and
Kathi Canese and
Vyacheslav Chetvernin and
Deanna M. Church and
Michael DiCuccio and
Scott Federhen and
Michael Feolo and
Lewis Y. Geer and
Wolfgang Helmberg and
Yuri Kapustin and
David Landsman and
David J. Lipman and
Zhiyong Lu and
Thomas L. Madden and
Tom Madej and
Donna R. Maglott and
Aron Marchler{-}Bauer and
Vadim Miller and
Ilene Mizrachi and
James Ostell and
Anna R. Panchenko and
Kim D. Pruitt and
Gregory D. Schuler and
Edwin Sequeira and
Stephen T. Sherry and
Martin Shumway and
Karl Sirotkin and
Douglas J. Slotta and
Alexandre Souvorov and
Grigory Starchenko and
Tatiana A. Tatusova and
Lukas Wagner and
Yanli Wang and
W. John Wilbur and
Eugene Yaschenko and
Jian Ye},
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {5--16},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp967},
doi = {10.1093/NAR/GKP967},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SayersBBBBCCCDFFGHKLLLMMMMMMOPPSSSSSSSSTWWWYY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShoemakerZTTFMBMP10,
author = {Benjamin A. Shoemaker and
Dachuan Zhang and
Ratna R. Thangudu and
Manoj Tyagi and
Jessica H. Fong and
Aron Marchler{-}Bauer and
Stephen H. Bryant and
Tom Madej and
Anna R. Panchenko},
title = {Inferred Biomolecular Interaction Server - a web server to analyze
and predict protein interacting partners and binding sites},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {518--524},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp842},
doi = {10.1093/NAR/GKP842},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShoemakerZTTFMBMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangACGHHLMMTZB07,
author = {Yanli Wang and
Kenneth J. Addess and
Jie Chen and
Lewis Y. Geer and
Jane He and
Siqian He and
Shennan Lu and
Thomas Madej and
Aron Marchler{-}Bauer and
Paul A. Thiessen and
Naigong Zhang and
Stephen H. Bryant},
title = {{MMDB:} annotating protein sequences with Entrez's 3D-structure database},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {298--300},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl952},
doi = {10.1093/NAR/GKL952},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangACGHHLMMTZB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerADFGHHJJLLLMMMNPRSSSTVWYYB03,
author = {Aron Marchler{-}Bauer and
John B. Anderson and
Carol DeWeese{-}Scott and
Natalie D. Fedorova and
Lewis Y. Geer and
Siqian He and
David I. Hurwitz and
John D. Jackson and
Aviva R. Jacobs and
Christopher J. Lanczycki and
Cynthia A. Liebert and
Chunlei Liu and
Thomas Madej and
Gabriele H. Marchler and
Raja Mazumder and
Anastasia N. Nikolskaya and
Anna R. Panchenko and
Bachoti S. Rao and
Benjamin A. Shoemaker and
Vahan Simonyan and
James S. Song and
Paul A. Thiessen and
Sona Vasudevan and
Yanli Wang and
Roxanne A. Yamashita and
Jodie J. Yin and
Stephen H. Bryant},
title = {{CDD:} a curated Entrez database of conserved domain alignments},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {383--387},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg087},
doi = {10.1093/NAR/GKG087},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerADFGHHJJLLLMMMNPRSSSTVWYYB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenADFGHHJJLLLMMMMNRPSSSTVWYYB03,
author = {Jie Chen and
John B. Anderson and
Carol DeWeese{-}Scott and
Natalie D. Fedorova and
Lewis Y. Geer and
Siqian He and
David I. Hurwitz and
John D. Jackson and
Aviva R. Jacobs and
Christopher J. Lanczycki and
Cynthia A. Liebert and
Chunlei Liu and
Thomas Madej and
Aron Marchler{-}Bauer and
Gabriele H. Marchler and
Raja Mazumder and
Anastasia N. Nikolskaya and
Bachoti S. Rao and
Anna R. Panchenko and
Benjamin A. Shoemaker and
Vahan Simonyan and
James S. Song and
Paul A. Thiessen and
Sona Vasudevan and
Yanli Wang and
Roxanne A. Yamashita and
Jodie J. Yin and
Stephen H. Bryant},
title = {{MMDB:} Entrez's 3D-structure database},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {474--477},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg086},
doi = {10.1093/NAR/GKG086},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChenADFGHHJJLLLMMMMNRPSSSTVWYYB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangACGHHLMMMPSSTYB03,
author = {Yanli Wang and
John B. Anderson and
Jie Chen and
Lewis Y. Geer and
Siqian He and
David I. Hurwitz and
Cynthia A. Liebert and
Thomas Madej and
Gabriele H. Marchler and
Aron Marchler{-}Bauer and
Anna R. Panchenko and
Benjamin A. Shoemaker and
James S. Song and
Paul A. Thiessen and
Roxanne A. Yamashita and
Stephen H. Bryant},
title = {{MMDB:} Entrez's 3D-structure database},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {249--252},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.249},
doi = {10.1093/NAR/30.1.249},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangACGHHLMMMPSSTYB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangAGMMZB00,
author = {Yanli Wang and
Kenneth J. Addess and
Lewis Y. Geer and
Thomas Madej and
Aron Marchler{-}Bauer and
Diane Zimmerman and
Stephen H. Bryant},
title = {{MMDB:} 3D structure data in Entrez},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {243--245},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.243},
doi = {10.1093/NAR/28.1.243},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangAGMMZB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerACGMMWB99,
author = {Aron Marchler{-}Bauer and
Kenneth J. Addess and
Colombe Chappey and
Lewis Y. Geer and
Thomas Madej and
Yo Matsuo and
Yanli Wang and
Stephen H. Bryant},
title = {{MMDB:} Entrez's 3D structure database},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {240--243},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.240},
doi = {10.1093/NAR/27.1.240},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerACGMMWB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dm/MadejW95,
author = {Tom Madej and
Douglas B. West},
title = {Interval number of special posets and random posets},
journal = {Discret. Math.},
volume = {144},
number = {1-3},
pages = {67--74},
year = {1995},
url = {https://doi.org/10.1016/0012-365X(94)00287-S},
doi = {10.1016/0012-365X(94)00287-S},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dm/MadejW95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dm/MadejW91,
author = {Tom Madej and
Douglas B. West},
title = {The interval inclusion number of a partially ordered set},
journal = {Discret. Math.},
volume = {88},
number = {2-3},
pages = {259--277},
year = {1991},
url = {https://doi.org/10.1016/0012-365X(91)90014-S},
doi = {10.1016/0012-365X(91)90014-S},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dm/MadejW91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jgt/Madej91,
author = {Tom Madej},
title = {Bounds for the crossing number of the \emph{N}-cube},
journal = {J. Graph Theory},
volume = {15},
number = {1},
pages = {81--97},
year = {1991},
url = {https://doi.org/10.1002/jgt.3190150109},
doi = {10.1002/JGT.3190150109},
timestamp = {Fri, 02 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jgt/Madej91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/us/Madej89,
author = {Thomas Madej},
title = {Topics in combinatorics and combinatorial algorithms},
school = {University of Illinois Urbana-Champaign, {USA}},
year = {1989},
url = {https://hdl.handle.net/2142/20233},
timestamp = {Fri, 13 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/us/Madej89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdcs/Madej89,
author = {Tom Madej},
title = {An application of group testing to the file comparison problem},
booktitle = {9th International Conference on Distributed Computing Systems, {ICDCS}
1989, Newport Beach, CA, USA, June 5-9, 1989},
pages = {237--243},
publisher = {{IEEE} Computer Society},
year = {1989},
url = {https://doi.org/10.1109/ICDCS.1989.37952},
doi = {10.1109/ICDCS.1989.37952},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdcs/Madej89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/KruskalRM86,
author = {Clyde P. Kruskal and
Larry Rudolph and
Tom Madej},
title = {Parallel Prefix on Fully Connected Direct Connection Machines},
booktitle = {International Conference on Parallel Processing, ICPP'86, University
Park, PA, USA, August 1986},
pages = {278--284},
publisher = {{IEEE} Computer Society Press},
year = {1986},
timestamp = {Mon, 28 Jul 2014 17:06:02 +0200},
biburl = {https://dblp.org/rec/conf/icpp/KruskalRM86.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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