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ORCIDBibTeX records: Alex L. Mitchell
@article{DBLP:journals/nar/CarbonDGUHMBCDH21,
author = {Seth Carbon and
Eric Douglass and
Benjamin M. Good and
Deepak R. Unni and
Nomi L. Harris and
Christopher J. Mungall and
Siddartha Basu and
Rex L. Chisholm and
Robert J. Dodson and
Eric Hartline and
Petra Fey and
Paul D. Thomas and
Laurent{-}Philippe Albou and
Dustin Ebert and
Michael J. Kesling and
Huaiyu Mi and
Anushya Muruganujan and
Xiaosong Huang and
Tremayne Mushayahama and
Sandra A. LaBonte and
Deborah A. Siegele and
Giulia Antonazzo and
Helen Attrill and
Nick H. Brown and
Phani V. Garapati and
Steven J. Marygold and
Vitor Trovisco and
Gilberto dos Santos and
Kathleen Falls and
Christopher J. Tabone and
Pinglei Zhou and
Joshua L. Goodman and
Victor B. Strelets and
Jim Thurmond and
Penelope Garmiri and
Rizwan Ishtiaq and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Marcio Luis Acencio and
Martin Kuiper and
Astrid L{\ae}greid and
Colin Logie and
Ruth C. Lovering and
Barbara Kramarz and
Shirin C. C. Saverimuttu and
Sandra M. Pinheiro and
Heather Gunn and
Renzhi Su and
Katherine E. Thurlow and
Marcus C. Chibucos and
Michelle G. Giglio and
Suvarna Nadendla and
James B. Munro and
Rebecca C. Jackson and
Margaret J. Duesbury and
Noemi del{-}Toro and
Birgit H. M. Meldal and
Kalpana Paneerselvam and
Livia Perfetto and
Pablo Porras and
Sandra E. Orchard and
Anjali Shrivastava and
Hsin{-}Yu Chang and
Robert D. Finn and
Alex L. Mitchell and
Neil D. Rawlings and
Lorna J. Richardson and
Amaia Sangrador{-}Vegas and
Judith A. Blake and
Karen R. Christie and
Mary E. Dolan and
Harold J. Drabkin and
David P. Hill and
Li Ni and
Dmitry M. Sitnikov and
Midori A. Harris and
Stephen G. Oliver and
Kim Rutherford and
Valerie Wood and
Jaqueline Hayles and
J{\"{u}}rg B{\"{a}}hler and
Elizabeth R. Bolton and
Jeffrey DePons and
Melinda R. Dwinell and
G. Thomas Hayman and
Mary L. Kaldunski and
Anne E. Kwitek and
Stanley J. F. Laulederkind and
Cody Plasterer and
Marek Tutaj and
Mahima Vedi and
Shur{-}Jen Wang and
Peter D'Eustachio and
Lisa Matthews and
James P. Balhoff and
Suzi A. Aleksander and
Michael J. Alexander and
J. Michael Cherry and
Stacia R. Engel and
Felix Gondwe and
Kalpana Karra and
Stuart R. Miyasato and
Robert S. Nash and
Matt Simison and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
Marc Feuermann and
Pascale Gaudet and
Anne Morgat and
Erica Bakker and
Tanya Z. Berardini and
Leonore Reiser and
Shabari Subramaniam and
Eva Huala and
Cecilia N. Arighi and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Ghislaine Argoud{-}Puy and
Alex Bateman and
Marie{-}Claude Blatter and
Emmanuel Boutet and
Emily Bowler and
Lionel Breuza and
Alan J. Bridge and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Cristina Casals{-}Casas and
Elisabeth Coudert and
Paul Denny and
Anne Estreicher and
Maria Livia Famiglietti and
George E. Georghiou and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Emma Hatton{-}Ellis and
Chantal Hulo and
Alexandr Ignatchenko and
Florence Jungo and
Kati Laiho and
Philippe Le Mercier and
Damien Lieberherr and
Antonia Lock and
Yvonne Lussi and
Alistair MacDougall and
Michele Magrane and
Maria Jesus Martin and
Patrick Masson and
Darren A. Natale and
Nevila Hyka{-}Nouspikel and
Ivo Pedruzzi and
Lucille Pourcel and
Sylvain Poux and
Sangya Pundir and
Catherine Rivoire and
Elena Speretta and
Shyamala Sundaram and
Nidhi Tyagi and
Kate Warner and
Rossana Zaru and
Cathy H. Wu and
Alexander D. Diehl and
Juancarlos Chan and
Christian A. Grove and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Daniela Raciti and
Kimberly Van Auken and
Paul W. Sternberg and
Matthew Berriman and
Michael Paulini and
Kevin L. Howe and
Sibyl Gao and
Adam Wright and
Lincoln Stein and
Douglas G. Howe and
Sabrina Toro and
Monte Westerfield and
Pankaj Jaiswal and
Laurel Cooper and
Justin Elser},
title = {The Gene Ontology resource: enriching a GOld mine},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D325--D334},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1113},
doi = {10.1093/NAR/GKAA1113},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CarbonDGUHMBCDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlumCCGKMNPQRRS21,
author = {Matthias Blum and
Hsin{-}Yu Chang and
Sara Chuguransky and
Tiago Grego and
Swaathi Kandasamy and
Alex L. Mitchell and
Gift Nuka and
Typhaine Paysan{-}Lafosse and
Matloob Qureshi and
Shriya Raj and
Lorna J. Richardson and
Gustavo A. Salazar and
Lowri Williams and
Peer Bork and
Alan J. Bridge and
Julian Gough and
Daniel H. Haft and
Ivica Letunic and
Aron Marchler{-}Bauer and
Huaiyu Mi and
Darren A. Natale and
Marco Necci and
Christine A. Orengo and
Arun Prasad Pandurangan and
Catherine Rivoire and
Christian J. A. Sigrist and
Ian Sillitoe and
Narmada Thanki and
Paul D. Thomas and
Silvio C. E. Tosatto and
Cathy H. Wu and
Alex Bateman and
Robert D. Finn},
title = {The InterPro protein families and domains database: 20 years on},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D344--D354},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa977},
doi = {10.1093/NAR/GKAA977},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BlumCCGKMNPQRRS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitchellABBBCCK20,
author = {Alex L. Mitchell and
Alexandre Almeida and
Martin Beracochea and
Miguel A. Boland and
Josephine Burgin and
Guy Cochrane and
Michael R. Crusoe and
Varsha Kale and
Simon C. Potter and
Lorna J. Richardson and
Ekaterina A. Sakharova and
Maxim Scheremetjew and
Anton I. Korobeynikov and
Alexander Shlemov and
Olga Kunyavskaya and
Alla L. Lapidus and
Robert D. Finn},
title = {MGnify: the microbiome analysis resource in 2020},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D570--D578},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz1035},
doi = {10.1093/NAR/GKZ1035},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MitchellABBBCCK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitchellABBBBBC19,
author = {Alex L. Mitchell and
Teresa K. Attwood and
Patricia C. Babbitt and
Matthias Blum and
Peer Bork and
Alan J. Bridge and
Shoshana D. Brown and
Hsin{-}Yu Chang and
Sara El{-}Gebali and
Matthew Fraser and
Julian Gough and
David Haft and
Hongzhan Huang and
Ivica Letunic and
Rodrigo Lopez and
Aurelien Luciani and
F{\'{a}}bio Madeira and
Aron Marchler{-}Bauer and
Huaiyu Mi and
Darren A. Natale and
Marco Necci and
Gift Nuka and
Christine A. Orengo and
Arun Prasad Pandurangan and
Typhaine Paysan{-}Lafosse and
Sebastien Pesseat and
Simon C. Potter and
Matloob Qureshi and
Neil D. Rawlings and
Nicole Redaschi and
Lorna J. Richardson and
Catherine Rivoire and
Gustavo A. Salazar and
Amaia Sangrador{-}Vegas and
Christian J. A. Sigrist and
Ian Sillitoe and
Granger G. Sutton and
Narmada Thanki and
Paul D. Thomas and
Silvio C. E. Tosatto and
Siew{-}Yit Yong and
Robert D. Finn},
title = {InterPro in 2019: improving coverage, classification and access to
protein sequence annotations},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D351--D360},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1100},
doi = {10.1093/NAR/GKY1100},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MitchellABBBBBC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/AttwoodM19,
author = {Teresa K. Attwood and
Alex L. Mitchell},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {The Evolution of Protein Family Databases},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
2},
pages = {34--45},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20268-9},
doi = {10.1016/B978-0-12-809633-8.20268-9},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/AttwoodM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitchellSDPTQSP18,
author = {Alex L. Mitchell and
Maxim Scheremetjew and
Hubert Denise and
Simon C. Potter and
Aleksandra Tarkowska and
Matloob Qureshi and
Gustavo A. Salazar and
Sebastien Pesseat and
Miguel A. Boland and
Fiona M. I. Hunter and
Petra ten Hoopen and
Blaise T. F. Alako and
Clara Amid and
Darren J. Wilkinson and
Thomas P. Curtis and
Guy Cochrane and
Robert D. Finn},
title = {{EBI} Metagenomics in 2017: enriching the analysis of microbial communities,
from sequence reads to assemblies},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D726--D735},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx967},
doi = {10.1093/NAR/GKX967},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MitchellSDPTQSP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/MeyerFGMHW18,
author = {Folker Meyer and
Robert D. Finn and
Wolfgang Gerlach and
Alex L. Mitchell and
Travis Harrison and
Andreas Wilke},
title = {On the way to research objects for environmental genomics (or metagenomics)},
booktitle = {Proceedings of Workshop on Research Objects (RO2018), Amsterdam, The
Netherlands, October 29, 2018},
year = {2018},
url = {https://doi.org/10.5281/zenodo.1309962},
doi = {10.5281/ZENODO.1309962},
timestamp = {Wed, 09 Oct 2019 10:24:55 +0200},
biburl = {https://dblp.org/rec/conf/ro/MeyerFGMHW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FinnABBBBCDEFGH17,
author = {Robert D. Finn and
Teresa K. Attwood and
Patricia C. Babbitt and
Alex Bateman and
Peer Bork and
Alan J. Bridge and
Hsin{-}Yu Chang and
Zsuzsanna Doszt{\'{a}}nyi and
Sara El{-}Gebali and
Matthew Fraser and
Julian Gough and
David Haft and
Gemma L. Holliday and
Hongzhan Huang and
Xiaosong Huang and
Ivica Letunic and
Rodrigo Lopez and
Shennan Lu and
Aron Marchler{-}Bauer and
Huaiyu Mi and
Jaina Mistry and
Darren A. Natale and
Marco Necci and
Gift Nuka and
Christine A. Orengo and
Young Mi Park and
Sebastien Pesseat and
Damiano Piovesan and
Simon C. Potter and
Neil D. Rawlings and
Nicole Redaschi and
Lorna J. Richardson and
Catherine Rivoire and
Amaia Sangrador{-}Vegas and
Christian J. A. Sigrist and
Ian Sillitoe and
Ben Smithers and
Silvano Squizzato and
Granger G. Sutton and
Narmada Thanki and
Paul D. Thomas and
Silvio C. E. Tosatto and
Cathy H. Wu and
Ioannis Xenarios and
Lai{-}Su L. Yeh and
Siew{-}Yit Yong and
Alex L. Mitchell},
title = {InterPro in 2017 - beyond protein family and domain annotations},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D190--D199},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1107},
doi = {10.1093/NAR/GKW1107},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/FinnABBBBCDEFGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/RobertsenDMFBW17,
author = {Espen Mikal Robertsen and
Hubert Denise and
Alex L. Mitchell and
Robert D. Finn and
Lars Ailo Bongo and
Nils Peder Willassen},
title = {{ELIXIR} pilot action: Marine metagenomics - towards a domain specific
set of sustainable services},
journal = {F1000Research},
volume = {6},
pages = {70},
year = {2017},
url = {https://doi.org/10.12688/f1000research.10443.1},
doi = {10.12688/F1000RESEARCH.10443.1},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/RobertsenDMFBW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Sangrador-Vegas16,
author = {Amaia Sangrador{-}Vegas and
Alex L. Mitchell and
Hsin{-}Yu Chang and
Siew{-}Yit Yong and
Robert D. Finn},
title = {{GO} annotation in InterPro: why stability does not indicate accuracy
in a sea of changing annotations},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw027},
doi = {10.1093/DATABASE/BAW027},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Sangrador-Vegas16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FinnCEEMMPPQSST16,
author = {Robert D. Finn and
Penelope Coggill and
Ruth Y. Eberhardt and
Sean R. Eddy and
Jaina Mistry and
Alex L. Mitchell and
Simon C. Potter and
Marco Punta and
Matloob Qureshi and
Amaia Sangrador{-}Vegas and
Gustavo A. Salazar and
John G. Tate and
Alex Bateman},
title = {The Pfam protein families database: towards a more sustainable future},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {279--285},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1344},
doi = {10.1093/NAR/GKV1344},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FinnCEEMMPPQSST16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitchellBCDHFPP16,
author = {Alex L. Mitchell and
Fran{\c{c}}ois Bucchini and
Guy Cochrane and
Hubert Denise and
Petra ten Hoopen and
Matthew Fraser and
Sebastien Pesseat and
Simon C. Potter and
Maxim Scheremetjew and
Peter Sterk and
Robert D. Finn},
title = {{EBI} metagenomics in 2016 - an expanding and evolving resource for
the analysis and archiving of metagenomic data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {595--603},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1195},
doi = {10.1093/NAR/GKV1195},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MitchellBCDHFPP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ForsterBKHDMFL16,
author = {Samuel C. Forster and
Hilary P. Browne and
Nitin Kumar and
Martin Hunt and
Hubert Denise and
Alex L. Mitchell and
Robert D. Finn and
Trevor D. Lawley},
title = {{HPMCD:} the database of human microbial communities from metagenomic
datasets and microbial reference genomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {604--609},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1216},
doi = {10.1093/NAR/GKV1216},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ForsterBKHDMFL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/CourtotMSPFFP16,
author = {M{\'{e}}lanie Courtot and
Alex L. Mitchell and
Maxim Scheremetjew and
Janet Pi{\~{n}}ero Gonz{\'{a}}lez and
Laura I. Furlong and
Robert D. Finn and
Helen E. Parkinson},
editor = {Adrian Paschke and
Albert Burger and
Andrea Splendiani and
M. Scott Marshall and
Paolo Romano},
title = {Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims},
booktitle = {Proceedings of the 9th International Conference Semantic Web Applications
and Tools for Life Sciences, Amsterdam, The Netherlands, December
5-8, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1795},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1795/paper23.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/CourtotMSPFFP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitchellCDFHLMMNPSSRYBPASRRXKGBLGOHHNWOSMTF15,
author = {Alex L. Mitchell and
Hsin{-}Yu Chang and
Louise C. Daugherty and
Matthew Fraser and
Sarah Hunter and
Rodrigo Lopez and
Craig McAnulla and
Conor McMenamin and
Gift Nuka and
Sebastien Pesseat and
Amaia Sangrador{-}Vegas and
Maxim Scheremetjew and
Claudia Rato and
Siew{-}Yit Yong and
Alex Bateman and
Marco Punta and
Teresa K. Attwood and
Christian J. A. Sigrist and
Nicole Redaschi and
Catherine Rivoire and
Ioannis Xenarios and
Daniel Kahn and
Dominique Guyot and
Peer Bork and
Ivica Letunic and
Julian Gough and
Matt E. Oates and
Daniel H. Haft and
Hongzhan Huang and
Darren A. Natale and
Cathy H. Wu and
Christine A. Orengo and
Ian Sillitoe and
Huaiyu Mi and
Paul D. Thomas and
Robert D. Finn},
title = {The InterPro protein families database: the classification resource
after 15 years},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {213--221},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1243},
doi = {10.1093/NAR/GKU1243},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MitchellCDFHLMMNPSSRYBPASRRXKGBLGOHHNWOSMTF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesBCFLMMMMNPQSSYLH14,
author = {Philip Jones and
David Binns and
Hsin{-}Yu Chang and
Matthew Fraser and
Weizhong Li and
Craig McAnulla and
Hamish McWilliam and
John Maslen and
Alex L. Mitchell and
Gift Nuka and
Sebastien Pesseat and
Antony F. Quinn and
Amaia Sangrador{-}Vegas and
Maxim Scheremetjew and
Siew{-}Yit Yong and
Rodrigo Lopez and
Sarah Hunter},
title = {InterProScan 5: genome-scale protein function classification},
journal = {Bioinform.},
volume = {30},
number = {9},
pages = {1236--1240},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu031},
doi = {10.1093/BIOINFORMATICS/BTU031},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesBCFLMMMMNPQSSYLH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HunterCDFBHJLMMMMNOPRRSSVCFS14,
author = {Sarah Hunter and
Matthew Corbett and
Hubert Denise and
Matthew Fraser and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Christopher I. Hunter and
Philip Jones and
Rasko Leinonen and
Craig McAnulla and
Eamonn Maguire and
John Maslen and
Alex L. Mitchell and
Gift Nuka and
Arnaud Oisel and
Sebastien Pesseat and
Rajesh Radhakrishnan and
Philippe Rocca{-}Serra and
Maxim Scheremetjew and
Peter Sterk and
Daniel Vaughan and
Guy Cochrane and
Dawn Field and
Susanna{-}Assunta Sansone},
title = {{EBI} metagenomics - a new resource for the analysis and archiving
of metagenomic data},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {600--606},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt961},
doi = {10.1093/NAR/GKT961},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HunterCDFBHJLMMMMNOPRRSSVCFS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13,
author = {Tony E. Lewis and
Ian Sillitoe and
Antonina Andreeva and
Tom L. Blundell and
Daniel W. A. Buchan and
Cyrus Chothia and
Alison L. Cuff and
Jose M. Dana and
Ioannis Filippis and
Julian Gough and
Sarah Hunter and
David T. Jones and
Lawrence A. Kelley and
Gerard J. Kleywegt and
Federico Minneci and
Alex L. Mitchell and
Alexey G. Murzin and
Bernardo Ochoa{-}Monta{\~{n}}o and
Owen J. L. Rackham and
James Smith and
Michael J. E. Sternberg and
Sameer Velankar and
Corin Yeats and
Christine A. Orengo},
title = {Genome3D: a {UK} collaborative project to annotate genomic sequences
with predicted 3D structures based on {SCOP} and {CATH} domains},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {499--507},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1266},
doi = {10.1093/NAR/GKS1266},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HunterMJMPSH12,
author = {Chris I. Hunter and
Alex L. Mitchell and
Philip Jones and
Craig McAnulla and
Sebastien Pesseat and
Maxim Scheremetjew and
Sarah Hunter},
title = {Metagenomic analysis: the challenge of the data bonanza},
journal = {Briefings Bioinform.},
volume = {13},
number = {6},
pages = {743--746},
year = {2012},
url = {https://doi.org/10.1093/bib/bbs020},
doi = {10.1093/BIB/BBS020},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HunterMJMPSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AttwoodCMPPPRTM12,
author = {Teresa K. Attwood and
Alain Coletta and
Gareth Muirhead and
Athanasia Pavlopoulou and
Peter B. Philippou and
Ivan Popov and
Carlos Rom{\'{a}}{-}Mateo and
Athina Theodosiou and
Alex L. Mitchell},
title = {The {PRINTS} database: a fine-grained protein sequence annotation
and analysis resource - its status in 2012},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas019},
doi = {10.1093/DATABASE/BAS019},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/AttwoodCMPPPRTM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BurgeKLMMMSYMH12,
author = {Sarah W. Burge and
Elizabeth Kelly and
David Lonsdale and
Prudence Mutowo{-}Meullenet and
Craig McAnulla and
Alex L. Mitchell and
Amaia Sangrador{-}Vegas and
Siew{-}Yit Yong and
Nicola J. Mulder and
Sarah Hunter},
title = {Manual {GO} annotation of predictive protein signatures: the InterPro
approach to {GO} curation},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bar068},
doi = {10.1093/DATABASE/BAR068},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/BurgeKLMMMSYMH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HunterJM12,
author = {Sarah Hunter and
Philip Jones and
Alex L. Mitchell and
Rolf Apweiler and
Teresa K. Attwood and
Alex Bateman and
Thomas Bernard and
David Binns and
Peer Bork and
Sarah W. Burge and
Edouard De Castro and
Penny C. Coggill and
Matthew Corbett and
Ujjwal Das and
Louise C. Daugherty and
Lauranne Duquenne and
Robert D. Finn and
Matthew Fraser and
Julian Gough and
Daniel H. Haft and
Nicolas Hulo and
Daniel Kahn and
Elizabeth Kelly and
Ivica Letunic and
David Lonsdale and
Rodrigo Lopez and
Martin Madera and
John Maslen and
Craig McAnulla and
Jennifer McDowall and
Conor McMenamin and
Huaiyu Mi and
Prudence Mutowo{-}Meullenet and
Nicola J. Mulder and
Darren A. Natale and
Christine A. Orengo and
Sebastien Pesseat and
Marco Punta and
Antony F. Quinn and
Catherine Rivoire and
Amaia Sangrador{-}Vegas and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Maxim Scheremetjew and
John G. Tate and
Manjulapramila Thimmajanarthanan and
Paul D. Thomas and
Cathy H. Wu and
Corin Yeats and
Siew{-}Yit Yong},
title = {InterPro in 2011: new developments in the family and domain prediction
database},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {306--312},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr948},
doi = {10.1093/NAR/GKR948},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HunterJM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HunterAABBBBDDDFGHHKKLLLLMMMMMMMNOQSSTTVWWY09,
author = {Sarah Hunter and
Rolf Apweiler and
Teresa K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Peer Bork and
Ujjwal Das and
Louise C. Daugherty and
Lauranne Duquenne and
Robert D. Finn and
Julian Gough and
Daniel H. Haft and
Nicolas Hulo and
Daniel Kahn and
Elizabeth Kelly and
Aur{\'{e}}lie Laugraud and
Ivica Letunic and
David Lonsdale and
Rodrigo Lopez and
Martin Madera and
John Maslen and
Craig McAnulla and
Jennifer McDowall and
Jaina Mistry and
Alex L. Mitchell and
Nicola J. Mulder and
Darren A. Natale and
Christine A. Orengo and
Antony F. Quinn and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Manjula Thimma and
Paul D. Thomas and
Franck Valentin and
Derek Wilson and
Cathy H. Wu and
Corin Yeats},
title = {InterPro: the integrative protein signature database},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {211--215},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn785},
doi = {10.1093/NAR/GKN785},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HunterAABBBBDDDFGHHKKLLLLMMMMMMMNOQSSTTVWWY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAA07,
author = {Nicola J. Mulder and
Rolf Apweiler and
Teresa K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Peer Bork and
Virginie Buillard and
Lorenzo Cerutti and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Louise C. Daugherty and
Mark Dibley and
Robert D. Finn and
Wolfgang Fleischmann and
Julian Gough and
Daniel H. Haft and
Nicolas Hulo and
Sarah Hunter and
Daniel Kahn and
Alexander Kanapin and
Anish Kejariwal and
Alberto Labarga and
Petra S. Langendijk{-}Genevaux and
David Lonsdale and
Rodrigo Lopez and
Ivica Letunic and
Martin Madera and
John Maslen and
Craig McAnulla and
Jennifer McDowall and
Jaina Mistry and
Alex L. Mitchell and
Anastasia N. Nikolskaya and
Sandra E. Orchard and
Christine A. Orengo and
Robert Petryszak and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Paul D. Thomas and
Franck Valentin and
Derek Wilson and
Cathy H. Wu and
Corin Yeats},
title = {New developments in the InterPro database},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {224--228},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl841},
doi = {10.1093/NAR/GKL841},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MulderAA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KimMAH07,
author = {Jee{-}Hyub Kim and
Alex L. Mitchell and
Teresa K. Attwood and
Melanie Hilario},
title = {Learning to extract relations for protein annotation},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {256--263},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm168},
doi = {10.1093/BIOINFORMATICS/BTM168},
timestamp = {Sat, 07 Sep 2019 11:59:25 +0200},
biburl = {https://dblp.org/rec/conf/ismb/KimMAH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MitchellDKHSA05,
author = {Alex L. Mitchell and
Anna Divoli and
Jee{-}Hyub Kim and
Melanie Hilario and
I. Selimas and
Teresa K. Attwood},
title = {{METIS:} multiple extraction techniques for informative sentences},
journal = {Bioinform.},
volume = {21},
number = {22},
pages = {4196--4197},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti675},
doi = {10.1093/BIOINFORMATICS/BTI675},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MitchellDKHSA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05,
author = {Nicola J. Mulder and
Rolf Apweiler and
Teresa K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Paul Bradley and
Peer Bork and
Phillip Bucher and
Lorenzo Cerutti and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Richard Durbin and
Wolfgang Fleischmann and
Julian Gough and
Daniel H. Haft and
Nicola Harte and
Nicolas Hulo and
Daniel Kahn and
Alexander Kanapin and
Maria Krestyaninova and
David Lonsdale and
Rodrigo Lopez and
Ivica Letunic and
Martin Madera and
John Maslen and
Jennifer McDowall and
Alex L. Mitchell and
Anastasia N. Nikolskaya and
Sandra E. Orchard and
Marco Pagni and
Chris P. Ponting and
Emmanuel Quevillon and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Ville Silventoinen and
David J. Studholme and
Robert Vaughan and
Cathy H. Wu},
title = {InterPro, progress and status in 2005},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {201--205},
year = {2005},
url = {https://doi.org/10.1093/nar/gki106},
doi = {10.1093/NAR/GKI106},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/HilarioMKBA04,
author = {Melanie Hilario and
Alex L. Mitchell and
Jee{-}Hyub Kim and
Paul Bradley and
Terri K. Attwood},
editor = {Jean{-}Fran{\c{c}}ois Boulicaut and
Floriana Esposito and
Fosca Giannotti and
Dino Pedreschi},
title = {Classifying Protein Fingerprints},
booktitle = {Knowledge Discovery in Databases: {PKDD} 2004, 8th European Conference
on Principles and Practice of Knowledge Discovery in Databases, Pisa,
Italy, September 20-24, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3202},
pages = {197--208},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30116-5\_20},
doi = {10.1007/978-3-540-30116-5\_20},
timestamp = {Tue, 14 May 2019 10:00:47 +0200},
biburl = {https://dblp.org/rec/conf/pkdd/HilarioMKBA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MitchellRA03,
author = {Alex L. Mitchell and
Jacqueline Ren{\'{e}}e Reich and
Terri K. Attwood},
title = {{PRECIS:} Protein reports engineered from concise information in {SWISS-PROT}},
journal = {Bioinform.},
volume = {19},
number = {13},
pages = {1664--1671},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg204},
doi = {10.1093/BIOINFORMATICS/BTG204},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MitchellRA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AttwoodBFGMMMNPTUZ03,
author = {Terri K. Attwood and
Paul Bradley and
Darren R. Flower and
Anna Gaulton and
Neil Maudling and
Alex L. Mitchell and
G. Moulton and
A. Nordle and
K. Paine and
P. Taylor and
A. Uddin and
Christianna Zygouri},
title = {{PRINTS} and its automatic supplement, prePRINTS},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {400--402},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg030},
doi = {10.1093/NAR/GKG030},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AttwoodBFGMMMNPTUZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AttwoodBFGMMMMMPS03,
author = {Terri K. Attwood and
Martin J. Blythe and
Darren R. Flower and
Anna Gaulton and
J. E. Mabey and
Neil Maudling and
L. McGregor and
Alex L. Mitchell and
G. Moulton and
K. Paine and
Philip Scordis},
title = {{PRINTS} and {PRINTS-S} shed light on protein ancestry},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {239--241},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.239},
doi = {10.1093/NAR/30.1.239},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AttwoodBFGMMMMMPS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/ReichMGA01,
author = {Jacqueline Ren{\'{e}}e Reich and
Alex L. Mitchell and
Carole A. Goble and
Terri K. Attwood},
title = {Toward More Intelligent Annotation Tools: {A} Prototype},
journal = {{IEEE} Intell. Syst.},
volume = {16},
number = {6},
pages = {42--51},
year = {2001},
url = {https://doi.org/10.1109/5254.972083},
doi = {10.1109/5254.972083},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/ReichMGA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/LordRMSAG01,
author = {Phillip W. Lord and
Jacqueline Ren{\'{e}}e Reich and
Alex L. Mitchell and
Robert D. Stevens and
Terri K. Attwood and
Carole A. Goble},
editor = {Nikolaos G. Bourbakis},
title = {{PRECIS:} An Automated Pipeline for Producing Concise Reports About
Proteins},
booktitle = {2nd {IEEE} International Symposium on Bioinformatics and Bioengineering,
Bethesda, Maryland, USA, November 4-5, 2001, Proceedings},
pages = {57--64},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/BIBE.2001.974412},
doi = {10.1109/BIBE.2001.974412},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/LordRMSAG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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