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BibTeX records: Marco Previtali
@article{DBLP:journals/isci/BonizzoniCFPPPR22, author = {Paola Bonizzoni and Matteo Costantini and Clelia de Felice and Alessia Petescia and Yuri Pirola and Marco Previtali and Raffaella Rizzi and Jens Stoye and Rocco Zaccagnino and Rosalba Zizza}, title = {Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches}, journal = {Inf. Sci.}, volume = {607}, pages = {458--476}, year = {2022}, url = {https://doi.org/10.1016/j.ins.2022.06.005}, doi = {10.1016/J.INS.2022.06.005}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/isci/BonizzoniCFPPPR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2202-13884, author = {Paola Bonizzoni and Matteo Costantini and Clelia De Felice and Alessia Petescia and Yuri Pirola and Marco Previtali and Raffaella Rizzi and Jens Stoye and Rocco Zaccagnino and Rosalba Zizza}, title = {Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches}, journal = {CoRR}, volume = {abs/2202.13884}, year = {2022}, url = {https://arxiv.org/abs/2202.13884}, eprinttype = {arXiv}, eprint = {2202.13884}, timestamp = {Thu, 03 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2202-13884.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CiccolellaBDBPV21, author = {Simone Ciccolella and Giulia Bernardini and Luca Denti and Paola Bonizzoni and Marco Previtali and Gianluca Della Vedova}, title = {Triplet-based similarity score for fully multilabeled trees with poly-occurring labels}, journal = {Bioinform.}, volume = {37}, number = {2}, pages = {178--184}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa676}, doi = {10.1093/BIOINFORMATICS/BTAA676}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CiccolellaBDBPV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DentiPPCVRB21, author = {Luca Denti and Yuri Pirola and Marco Previtali and Tamara Ceccato and Gianluca Della Vedova and Raffaella Rizzi and Paola Bonizzoni}, title = {Shark: fishing relevant reads in an RNA-Seq sample}, journal = {Bioinform.}, volume = {37}, number = {4}, pages = {464--472}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa779}, doi = {10.1093/BIOINFORMATICS/BTAA779}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DentiPPCVRB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CiccolellaDBVPP21a, author = {Simone Ciccolella and Luca Denti and Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali}, title = {{MALVIRUS:} an integrated application for viral variant analysis}, journal = {{BMC} Bioinform.}, volume = {22-S}, number = {15}, pages = {625}, year = {2021}, url = {https://doi.org/10.1186/s12859-022-04668-0}, doi = {10.1186/S12859-022-04668-0}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CiccolellaDBVPP21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniVPPR21, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Computing the multi-string {BWT} and {LCP} array in external memory}, journal = {Theor. Comput. Sci.}, volume = {862}, pages = {42--58}, year = {2021}, url = {https://doi.org/10.1016/j.tcs.2020.11.041}, doi = {10.1016/J.TCS.2020.11.041}, timestamp = {Tue, 23 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVPPR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR19, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array}, journal = {J. Comput. Biol.}, volume = {26}, number = {9}, pages = {948--961}, year = {2019}, url = {https://doi.org/10.1089/cmb.2018.0230}, doi = {10.1089/CMB.2018.0230}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/RizziBPPPVB19, author = {Raffaella Rizzi and Stefano Beretta and Murray Patterson and Yuri Pirola and Marco Previtali and Gianluca Della Vedova and Paola Bonizzoni}, title = {Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era}, journal = {Quant. Biol.}, volume = {7}, number = {4}, pages = {278--292}, year = {2019}, url = {https://doi.org/10.1007/s40484-019-0181-x}, doi = {10.1007/S40484-019-0181-X}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/quanbio/RizziBPPPVB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/0001DP19, author = {Stefano Beretta and Luca Denti and Marco Previtali}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Graph Theory and Definitions}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {922--927}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20421-4}, doi = {10.1016/B978-0-12-809633-8.20421-4}, timestamp = {Thu, 05 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/0001DP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/0001DP19a, author = {Stefano Beretta and Luca Denti and Marco Previtali}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Network Properties}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {928--932}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20422-6}, doi = {10.1016/B978-0-12-809633-8.20422-6}, timestamp = {Thu, 05 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/0001DP19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DentiRBVPB18, author = {Luca Denti and Raffaella Rizzi and Stefano Beretta and Gianluca Della Vedova and Marco Previtali and Paola Bonizzoni}, title = {{ASGAL:} aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events}, journal = {{BMC} Bioinform.}, volume = {19}, number = {1}, pages = {444:1--444:21}, year = {2018}, url = {https://doi.org/10.1186/s12859-018-2436-3}, doi = {10.1186/S12859-018-2436-3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DentiRBVPB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijfcs/BelazzouguiGMPP18, author = {Djamal Belazzougui and Travis Gagie and Veli M{\"{a}}kinen and Marco Previtali and Simon J. Puglisi}, title = {Bidirectional Variable-Order de Bruijn Graphs}, journal = {Int. J. Found. Comput. Sci.}, volume = {29}, number = {8}, pages = {1279--1295}, year = {2018}, url = {https://doi.org/10.1142/S0129054118430037}, doi = {10.1142/S0129054118430037}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijfcs/BelazzouguiGMPP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cie/BonizzoniVNPPR18, author = {Paola Bonizzoni and Gianluca Della Vedova and Serena Nicosia and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Florin Manea and Russell G. Miller and Dirk Nowotka}, title = {Divide and Conquer Computation of the Multi-string {BWT} and {LCP} Array}, booktitle = {Sailing Routes in the World of Computation - 14th Conference on Computability in Europe, CiE 2018, Kiel, Germany, July 30 - August 3, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10936}, pages = {107--117}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-94418-0\_11}, doi = {10.1007/978-3-319-94418-0\_11}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cie/BonizzoniVNPPR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/it/Previtali17, author = {Marco Previtali}, title = {Self-indexing for de novo assembly}, school = {University of Milan, Italy}, year = {2017}, url = {https://opac.bncf.firenze.sbn.it/bncf-prod/resource?uri=TD17014895}, timestamp = {Sat, 06 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/it/Previtali17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithmica/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {An External-Memory Algorithm for String Graph Construction}, journal = {Algorithmica}, volume = {78}, number = {2}, pages = {394--424}, year = {2017}, url = {https://doi.org/10.1007/s00453-016-0165-4}, doi = {10.1007/S00453-016-0165-4}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly}, journal = {J. Comput. Biol.}, volume = {24}, number = {10}, pages = {953--968}, year = {2017}, url = {https://doi.org/10.1089/cmb.2017.0089}, doi = {10.1089/CMB.2017.0089}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/alcob/0001BDPR17, author = {Stefano Beretta and Paola Bonizzoni and Luca Denti and Marco Previtali and Raffaella Rizzi}, editor = {Daniel Figueiredo and Carlos Mart{\'{\i}}n{-}Vide and Diogo Pratas and Miguel A. Vega{-}Rodr{\'{\i}}guez}, title = {Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext}, booktitle = {Algorithms for Computational Biology - 4th International Conference, AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10252}, pages = {49--61}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-58163-7\_3}, doi = {10.1007/978-3-319-58163-7\_3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/alcob/0001BDPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Computing the {BWT} and {LCP} array of a Set of Strings in External Memory}, journal = {CoRR}, volume = {abs/1705.07756}, year = {2017}, url = {http://arxiv.org/abs/1705.07756}, eprinttype = {arXiv}, eprint = {1705.07756}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{LSG:} An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly}, journal = {J. Comput. Biol.}, volume = {23}, number = {3}, pages = {137--149}, year = {2016}, url = {https://doi.org/10.1089/cmb.2015.0172}, doi = {10.1089/CMB.2015.0172}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Anu G. Bourgeois and Pavel Skums and Xiang Wan and Alex Zelikovsky}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads Data}, booktitle = {Bioinformatics Research and Applications - 12th International Symposium, {ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9683}, pages = {27--39}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-38782-6\_3}, doi = {10.1007/978-3-319-38782-6\_3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbra/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/latin/BelazzouguiGMPP16, author = {Djamal Belazzougui and Travis Gagie and Veli M{\"{a}}kinen and Marco Previtali and Simon J. Puglisi}, editor = {Evangelos Kranakis and Gonzalo Navarro and Edgar Ch{\'{a}}vez}, title = {Bidirectional Variable-Order de Bruijn Graphs}, booktitle = {{LATIN} 2016: Theoretical Informatics - 12th Latin American Symposium, Ensenada, Mexico, April 11-15, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9644}, pages = {164--178}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-662-49529-2\_13}, doi = {10.1007/978-3-662-49529-2\_13}, timestamp = {Wed, 28 Feb 2024 00:16:41 +0100}, biburl = {https://dblp.org/rec/conf/latin/BelazzouguiGMPP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/spire/BelazzouguiGMP16, author = {Djamal Belazzougui and Travis Gagie and Veli M{\"{a}}kinen and Marco Previtali}, editor = {Shunsuke Inenaga and Kunihiko Sadakane and Tetsuya Sakai}, title = {Fully Dynamic de Bruijn Graphs}, booktitle = {String Processing and Information Retrieval - 23rd International Symposium, {SPIRE} 2016, Beppu, Japan, October 18-20, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9954}, pages = {145--152}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-46049-9\_14}, doi = {10.1007/978-3-319-46049-9\_14}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/spire/BelazzouguiGMP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads Data}, journal = {CoRR}, volume = {abs/1604.03587}, year = {2016}, url = {http://arxiv.org/abs/1604.03587}, eprinttype = {arXiv}, eprint = {1604.03587}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BelazzouguiGMP16, author = {Djamal Belazzougui and Travis Gagie and Veli M{\"{a}}kinen and Marco Previtali}, title = {Fully Dynamic de Bruijn Graphs}, journal = {CoRR}, volume = {abs/1607.04909}, year = {2016}, url = {http://arxiv.org/abs/1607.04909}, eprinttype = {arXiv}, eprint = {1607.04909}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BelazzouguiGMP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVNPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Serena Nicosia and Marco Previtali and Raffaella Rizzi}, title = {A New Lightweight Algorithm to compute the {BWT} and the {LCP} array of a Set of Strings}, journal = {CoRR}, volume = {abs/1607.08342}, year = {2016}, url = {http://arxiv.org/abs/1607.08342}, eprinttype = {arXiv}, eprint = {1607.08342}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVNPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniVPPR14, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Constructing String Graphs in External Memory}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {311--325}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_23}, doi = {10.1007/978-3-662-44753-6\_23}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVPPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR14, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Constructing String Graphs in External Memory}, journal = {CoRR}, volume = {abs/1405.7520}, year = {2014}, url = {http://arxiv.org/abs/1405.7520}, eprinttype = {arXiv}, eprint = {1405.7520}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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