BibTeX records: Marco Previtali

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@article{DBLP:journals/isci/BonizzoniCFPPPR22,
  author       = {Paola Bonizzoni and
                  Matteo Costantini and
                  Clelia de Felice and
                  Alessia Petescia and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi and
                  Jens Stoye and
                  Rocco Zaccagnino and
                  Rosalba Zizza},
  title        = {Numeric Lyndon-based feature embedding of sequencing reads for machine
                  learning approaches},
  journal      = {Inf. Sci.},
  volume       = {607},
  pages        = {458--476},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.ins.2022.06.005},
  doi          = {10.1016/J.INS.2022.06.005},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isci/BonizzoniCFPPPR22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-13884,
  author       = {Paola Bonizzoni and
                  Matteo Costantini and
                  Clelia De Felice and
                  Alessia Petescia and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi and
                  Jens Stoye and
                  Rocco Zaccagnino and
                  Rosalba Zizza},
  title        = {Numeric Lyndon-based feature embedding of sequencing reads for machine
                  learning approaches},
  journal      = {CoRR},
  volume       = {abs/2202.13884},
  year         = {2022},
  url          = {https://arxiv.org/abs/2202.13884},
  eprinttype    = {arXiv},
  eprint       = {2202.13884},
  timestamp    = {Thu, 03 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2202-13884.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CiccolellaBDBPV21,
  author       = {Simone Ciccolella and
                  Giulia Bernardini and
                  Luca Denti and
                  Paola Bonizzoni and
                  Marco Previtali and
                  Gianluca Della Vedova},
  title        = {Triplet-based similarity score for fully multilabeled trees with poly-occurring
                  labels},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {2},
  pages        = {178--184},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa676},
  doi          = {10.1093/BIOINFORMATICS/BTAA676},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CiccolellaBDBPV21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DentiPPCVRB21,
  author       = {Luca Denti and
                  Yuri Pirola and
                  Marco Previtali and
                  Tamara Ceccato and
                  Gianluca Della Vedova and
                  Raffaella Rizzi and
                  Paola Bonizzoni},
  title        = {Shark: fishing relevant reads in an RNA-Seq sample},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {4},
  pages        = {464--472},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa779},
  doi          = {10.1093/BIOINFORMATICS/BTAA779},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DentiPPCVRB21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CiccolellaDBVPP21a,
  author       = {Simone Ciccolella and
                  Luca Denti and
                  Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali},
  title        = {{MALVIRUS:} an integrated application for viral variant analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {22-S},
  number       = {15},
  pages        = {625},
  year         = {2021},
  url          = {https://doi.org/10.1186/s12859-022-04668-0},
  doi          = {10.1186/S12859-022-04668-0},
  timestamp    = {Sat, 28 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CiccolellaDBVPP21a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BonizzoniVPPR21,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {Computing the multi-string {BWT} and {LCP} array in external memory},
  journal      = {Theor. Comput. Sci.},
  volume       = {862},
  pages        = {42--58},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.tcs.2020.11.041},
  doi          = {10.1016/J.TCS.2020.11.041},
  timestamp    = {Tue, 23 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tcs/BonizzoniVPPR21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniVPPR19,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {Multithread Multistring Burrows-Wheeler Transform and Longest Common
                  Prefix Array},
  journal      = {J. Comput. Biol.},
  volume       = {26},
  number       = {9},
  pages        = {948--961},
  year         = {2019},
  url          = {https://doi.org/10.1089/cmb.2018.0230},
  doi          = {10.1089/CMB.2018.0230},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/RizziBPPPVB19,
  author       = {Raffaella Rizzi and
                  Stefano Beretta and
                  Murray Patterson and
                  Yuri Pirola and
                  Marco Previtali and
                  Gianluca Della Vedova and
                  Paola Bonizzoni},
  title        = {Overlap graphs and de Bruijn graphs: data structures for de novo genome
                  assembly in the big data era},
  journal      = {Quant. Biol.},
  volume       = {7},
  number       = {4},
  pages        = {278--292},
  year         = {2019},
  url          = {https://doi.org/10.1007/s40484-019-0181-x},
  doi          = {10.1007/S40484-019-0181-X},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/quanbio/RizziBPPPVB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/0001DP19,
  author       = {Stefano Beretta and
                  Luca Denti and
                  Marco Previtali},
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Graph Theory and Definitions},
  booktitle    = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  1},
  pages        = {922--927},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://doi.org/10.1016/b978-0-12-809633-8.20421-4},
  doi          = {10.1016/B978-0-12-809633-8.20421-4},
  timestamp    = {Thu, 05 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/0001DP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/0001DP19a,
  author       = {Stefano Beretta and
                  Luca Denti and
                  Marco Previtali},
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Network Properties},
  booktitle    = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  1},
  pages        = {928--932},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://doi.org/10.1016/b978-0-12-809633-8.20422-6},
  doi          = {10.1016/B978-0-12-809633-8.20422-6},
  timestamp    = {Thu, 05 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/0001DP19a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DentiRBVPB18,
  author       = {Luca Denti and
                  Raffaella Rizzi and
                  Stefano Beretta and
                  Gianluca Della Vedova and
                  Marco Previtali and
                  Paola Bonizzoni},
  title        = {{ASGAL:} aligning RNA-Seq data to a splicing graph to detect novel
                  alternative splicing events},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {444:1--444:21},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2436-3},
  doi          = {10.1186/S12859-018-2436-3},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DentiRBVPB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/BelazzouguiGMPP18,
  author       = {Djamal Belazzougui and
                  Travis Gagie and
                  Veli M{\"{a}}kinen and
                  Marco Previtali and
                  Simon J. Puglisi},
  title        = {Bidirectional Variable-Order de Bruijn Graphs},
  journal      = {Int. J. Found. Comput. Sci.},
  volume       = {29},
  number       = {8},
  pages        = {1279--1295},
  year         = {2018},
  url          = {https://doi.org/10.1142/S0129054118430037},
  doi          = {10.1142/S0129054118430037},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijfcs/BelazzouguiGMPP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cie/BonizzoniVNPPR18,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Serena Nicosia and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  editor       = {Florin Manea and
                  Russell G. Miller and
                  Dirk Nowotka},
  title        = {Divide and Conquer Computation of the Multi-string {BWT} and {LCP}
                  Array},
  booktitle    = {Sailing Routes in the World of Computation - 14th Conference on Computability
                  in Europe, CiE 2018, Kiel, Germany, July 30 - August 3, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10936},
  pages        = {107--117},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-319-94418-0\_11},
  doi          = {10.1007/978-3-319-94418-0\_11},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cie/BonizzoniVNPPR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/it/Previtali17,
  author       = {Marco Previtali},
  title        = {Self-indexing for de novo assembly},
  school       = {University of Milan, Italy},
  year         = {2017},
  url          = {https://opac.bncf.firenze.sbn.it/bncf-prod/resource?uri=TD17014895},
  timestamp    = {Sat, 06 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/it/Previtali17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/BonizzoniVPPR17,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {An External-Memory Algorithm for String Graph Construction},
  journal      = {Algorithmica},
  volume       = {78},
  number       = {2},
  pages        = {394--424},
  year         = {2017},
  url          = {https://doi.org/10.1007/s00453-016-0165-4},
  doi          = {10.1007/S00453-016-0165-4},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/algorithmica/BonizzoniVPPR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniVPPR17,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {{FSG:} Fast String Graph Construction for De Novo Assembly},
  journal      = {J. Comput. Biol.},
  volume       = {24},
  number       = {10},
  pages        = {953--968},
  year         = {2017},
  url          = {https://doi.org/10.1089/cmb.2017.0089},
  doi          = {10.1089/CMB.2017.0089},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/0001BDPR17,
  author       = {Stefano Beretta and
                  Paola Bonizzoni and
                  Luca Denti and
                  Marco Previtali and
                  Raffaella Rizzi},
  editor       = {Daniel Figueiredo and
                  Carlos Mart{\'{\i}}n{-}Vide and
                  Diogo Pratas and
                  Miguel A. Vega{-}Rodr{\'{\i}}guez},
  title        = {Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern
                  Matching to a Hypertext},
  booktitle    = {Algorithms for Computational Biology - 4th International Conference,
                  AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10252},
  pages        = {49--61},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-58163-7\_3},
  doi          = {10.1007/978-3-319-58163-7\_3},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/alcob/0001BDPR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVPPR17,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {Computing the {BWT} and {LCP} array of a Set of Strings in External
                  Memory},
  journal      = {CoRR},
  volume       = {abs/1705.07756},
  year         = {2017},
  url          = {http://arxiv.org/abs/1705.07756},
  eprinttype    = {arXiv},
  eprint       = {1705.07756},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/BonizzoniVPPR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniVPPR16,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {{LSG:} An External-Memory Tool to Compute String Graphs for Next-Generation
                  Sequencing Data Assembly},
  journal      = {J. Comput. Biol.},
  volume       = {23},
  number       = {3},
  pages        = {137--149},
  year         = {2016},
  url          = {https://doi.org/10.1089/cmb.2015.0172},
  doi          = {10.1089/CMB.2015.0172},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/BonizzoniVPPR16,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  editor       = {Anu G. Bourgeois and
                  Pavel Skums and
                  Xiang Wan and
                  Alex Zelikovsky},
  title        = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads
                  Data},
  booktitle    = {Bioinformatics Research and Applications - 12th International Symposium,
                  {ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9683},
  pages        = {27--39},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-38782-6\_3},
  doi          = {10.1007/978-3-319-38782-6\_3},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbra/BonizzoniVPPR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/latin/BelazzouguiGMPP16,
  author       = {Djamal Belazzougui and
                  Travis Gagie and
                  Veli M{\"{a}}kinen and
                  Marco Previtali and
                  Simon J. Puglisi},
  editor       = {Evangelos Kranakis and
                  Gonzalo Navarro and
                  Edgar Ch{\'{a}}vez},
  title        = {Bidirectional Variable-Order de Bruijn Graphs},
  booktitle    = {{LATIN} 2016: Theoretical Informatics - 12th Latin American Symposium,
                  Ensenada, Mexico, April 11-15, 2016, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9644},
  pages        = {164--178},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-662-49529-2\_13},
  doi          = {10.1007/978-3-662-49529-2\_13},
  timestamp    = {Wed, 28 Feb 2024 00:16:41 +0100},
  biburl       = {https://dblp.org/rec/conf/latin/BelazzouguiGMPP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spire/BelazzouguiGMP16,
  author       = {Djamal Belazzougui and
                  Travis Gagie and
                  Veli M{\"{a}}kinen and
                  Marco Previtali},
  editor       = {Shunsuke Inenaga and
                  Kunihiko Sadakane and
                  Tetsuya Sakai},
  title        = {Fully Dynamic de Bruijn Graphs},
  booktitle    = {String Processing and Information Retrieval - 23rd International Symposium,
                  {SPIRE} 2016, Beppu, Japan, October 18-20, 2016, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9954},
  pages        = {145--152},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46049-9\_14},
  doi          = {10.1007/978-3-319-46049-9\_14},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/spire/BelazzouguiGMP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVPPR16,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads
                  Data},
  journal      = {CoRR},
  volume       = {abs/1604.03587},
  year         = {2016},
  url          = {http://arxiv.org/abs/1604.03587},
  eprinttype    = {arXiv},
  eprint       = {1604.03587},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/BonizzoniVPPR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BelazzouguiGMP16,
  author       = {Djamal Belazzougui and
                  Travis Gagie and
                  Veli M{\"{a}}kinen and
                  Marco Previtali},
  title        = {Fully Dynamic de Bruijn Graphs},
  journal      = {CoRR},
  volume       = {abs/1607.04909},
  year         = {2016},
  url          = {http://arxiv.org/abs/1607.04909},
  eprinttype    = {arXiv},
  eprint       = {1607.04909},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/BelazzouguiGMP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVNPR16,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Serena Nicosia and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {A New Lightweight Algorithm to compute the {BWT} and the {LCP} array
                  of a Set of Strings},
  journal      = {CoRR},
  volume       = {abs/1607.08342},
  year         = {2016},
  url          = {http://arxiv.org/abs/1607.08342},
  eprinttype    = {arXiv},
  eprint       = {1607.08342},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/BonizzoniVNPR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniVPPR14,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  editor       = {Daniel G. Brown and
                  Burkhard Morgenstern},
  title        = {Constructing String Graphs in External Memory},
  booktitle    = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
                  2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8701},
  pages        = {311--325},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-662-44753-6\_23},
  doi          = {10.1007/978-3-662-44753-6\_23},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/BonizzoniVPPR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BonizzoniVPPR14,
  author       = {Paola Bonizzoni and
                  Gianluca Della Vedova and
                  Yuri Pirola and
                  Marco Previtali and
                  Raffaella Rizzi},
  title        = {Constructing String Graphs in External Memory},
  journal      = {CoRR},
  volume       = {abs/1405.7520},
  year         = {2014},
  url          = {http://arxiv.org/abs/1405.7520},
  eprinttype    = {arXiv},
  eprint       = {1405.7520},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/BonizzoniVPPR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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