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ORCIDBibTeX records: Mattia Prosperi
@inproceedings{DBLP:conf/biostec/SunLPFSFDPM24,
author = {Chaoyue Sun and
Yiyang Liu and
Christina Parisi and
Rebecca Fisk{-}Hoffman and
Marco Salemi and
Ruogu Fang and
Brandi Danforth and
Mattia Prosperi and
Simone Marini},
editor = {Hannes Schlieter and
Ana L. N. Fred and
Hugo Gamboa},
title = {Learning on Forecasting {HIV} Epidemic Based on Individuals' Contact
Networks},
booktitle = {Proceedings of the 17th International Joint Conference on Biomedical
Engineering Systems and Technologies, {BIOSTEC} 2024, Volume 2, Rome,
Italy, February 21-23, 2024},
pages = {103--111},
publisher = {{SCITEPRESS}},
year = {2024},
timestamp = {Fri, 22 Mar 2024 11:14:45 +0100},
biburl = {https://dblp.org/rec/conf/biostec/SunLPFSFDPM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ChenZYWHXGPWXCH23,
author = {Zhaoyi Chen and
Hansi Zhang and
Xi Yang and
Songzi Wu and
Xing He and
Jie Xu and
Jingchuan Guo and
Mattia Prosperi and
Fei Wang and
Hua Xu and
Yong Chen and
Hui Hu and
Steven DeKosky and
Matthew Farrer and
Yi Guo and
Yonghui Wu and
Jiang Bian},
title = {Assess the documentation of cognitive tests and biomarkers in electronic
health records via natural language processing for Alzheimer's disease
and related dementias},
journal = {Int. J. Medical Informatics},
volume = {170},
pages = {104973},
year = {2023},
url = {https://doi.org/10.1016/j.ijmedinf.2022.104973},
doi = {10.1016/J.IJMEDINF.2022.104973},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/ChenZYWHXGPWXCH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiLASDBWHPSAHSGBS23,
author = {Piaopiao Li and
Tianchen Lyu and
Khalid Alkhuzam and
Eliot Spector and
William T. Donahoo and
Sarah Bost and
Yonghui Wu and
William R. Hogan and
Mattia Prosperi and
Desmond A. Schatz and
Mark A Atkinson and
Michael J. Haller and
Elizabeth A. Shenkman and
Yi Guo and
Jiang Bian and
Hui Shao},
title = {The role of health system penetration rate in estimating the prevalence
of type 1 diabetes in children and adolescents using electronic health
records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {31},
number = {1},
pages = {165--173},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad194},
doi = {10.1093/JAMIA/OCAD194},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LiLASDBWHPSAHSGBS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/SnigurskaSSPMCBBL23,
author = {Urszula Alina Snigurska and
Sarah E. Ser and
Laurence M. Solberg and
Mattia Prosperi and
Tanja Magoc and
Zhaoyi Chen and
Jiang Bian and
Ragnhildur I. Bjarnadottir and
Robert J. Lucero},
title = {Application of a practice-based approach in variable selection for
a prediction model development study of hospital-induced delirium},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {23},
number = {1},
pages = {181},
year = {2023},
url = {https://doi.org/10.1186/s12911-023-02278-1},
doi = {10.1186/S12911-023-02278-1},
timestamp = {Mon, 18 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/SnigurskaSSPMCBBL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BoninDWPBFMPNMB23,
author = {Nathalie Bonin and
Enrique Doster and
Hannah Worley and
Lee J. Pinnell and
Jonathan E. Bravo and
Peter Ferm and
Simone Marini and
Mattia Prosperi and
Noelle R. Noyes and
Paul S. Morley and
Christina Boucher},
title = {MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial
resistance determinants and an improved software pipeline for classification
using high-throughput sequencing},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {744--752},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1047},
doi = {10.1093/NAR/GKAC1047},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BoninDWPBFMPNMB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/JunLXBP23,
author = {Inyoung Jun and
Sarah E. S. Leary and
Jie Xu and
Jiang Bian and
Mattia Prosperi},
title = {Quantification of Racial Disparity on Urinary Tract Infection Recurrence
and Treatment Resistance in Florida using Algorithmic Fairness Methods},
booktitle = {11th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2023, Houston, TX, USA, June 26-29, 2023},
pages = {261--267},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICHI57859.2023.00043},
doi = {10.1109/ICHI57859.2023.00043},
timestamp = {Wed, 17 Jan 2024 17:11:28 +0100},
biburl = {https://dblp.org/rec/conf/ichi/JunLXBP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kddcd/LeLNTSCKPWP23,
author = {Thuc Duy Le and
Jiuyong Li and
Robert Ness and
Sofia Triantafillou and
Shohei Shimizu and
Peng Cui and
Kun Kuang and
Jian Pei and
Fei Wang and
Mattia Prosperi},
editor = {Thuc Duy Le and
Jiuyong Li and
Robert Ness and
Sofia Triantafillou and
Shohei Shimizu and
Peng Cui and
Kun Kuang and
Jian Pei and
Fei Wang and
Mattia Prosperi},
title = {Preface: The 2023 {ACM} {SIGKDD} Workshop on Causal Discovery, Prediction
and Decision},
booktitle = {The KDD'23 Workshop on Causal Discovery, Prediction and Decision,
07 August 2023, Long Beach, CA, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {218},
pages = {1--2},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v218/le23a.html},
timestamp = {Sat, 09 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kddcd/LeLNTSCKPWP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kddcd/JunCSMLBP23,
author = {Inyoung Jun and
Scott A. Cohen and
Sarah E. Ser and
Simone Marini and
Robert J. Lucero and
Jiang Bian and
Mattia Prosperi},
editor = {Thuc Duy Le and
Jiuyong Li and
Robert Ness and
Sofia Triantafillou and
Shohei Shimizu and
Peng Cui and
Kun Kuang and
Jian Pei and
Fei Wang and
Mattia Prosperi},
title = {Optimizing Dynamic Antibiotic Treatment Strategies against Invasive
Methicillin-Resistant Staphylococcus Aureus Infections using Causal
Survival Forests and G-Formula on Statewide Electronic Health Record
Data},
booktitle = {The KDD'23 Workshop on Causal Discovery, Prediction and Decision,
07 August 2023, Long Beach, CA, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {218},
pages = {98--115},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v218/jun23a.html},
timestamp = {Sat, 09 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kddcd/JunCSMLBP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/FengCGPMBW023,
author = {Zheng Feng and
Zhaoyi Chen and
Yi Guo and
Mattia Prosperi and
Hiren J. Mehta and
Dejana Braithwaite and
Yonghui Wu and
Jiang Bian},
editor = {Jen Bichel{-}Findlay and
Paula Otero and
Philip Scott and
Elaine Huesing},
title = {Real-World Effectiveness of Lung Cancer Screening Using Deep Learning-Based
Counterfactual Prediction},
booktitle = {{MEDINFO} 2023 - The Future Is Accessible - Proceedings of the 19th
World Congress on Medical and Health Informatics, Sydney, NSW, Australia,
8-12 July 2023},
series = {Studies in Health Technology and Informatics},
volume = {310},
pages = {419--423},
publisher = {{IOS} Press},
year = {2023},
url = {https://doi.org/10.3233/SHTI230999},
doi = {10.3233/SHTI230999},
timestamp = {Thu, 28 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/FengCGPMBW023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/kddcd/2023,
editor = {Thuc Duy Le and
Jiuyong Li and
Robert Ness and
Sofia Triantafillou and
Shohei Shimizu and
Peng Cui and
Kun Kuang and
Jian Pei and
Fei Wang and
Mattia Prosperi},
title = {The KDD'23 Workshop on Causal Discovery, Prediction and Decision,
07 August 2023, Long Beach, CA, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {218},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v218/},
timestamp = {Sat, 09 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kddcd/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-04201,
author = {Shantanu Ghosh and
Zheng Feng and
Jiang Bian and
Kevin Butler and
Mattia Prosperi},
title = {{DR-VIDAL} - Doubly Robust Variational Information-theoretic Deep
Adversarial Learning for Counterfactual Prediction and Treatment Effect
Estimation on Real World Data},
journal = {CoRR},
volume = {abs/2303.04201},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.04201},
doi = {10.48550/ARXIV.2303.04201},
eprinttype = {arXiv},
eprint = {2303.04201},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-04201.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-00111,
author = {Aokun Chen and
Daniel Paredes and
Zehao Yu and
Xiwei Lou and
Roberta Brunson and
Jamie N. Thomas and
Kimberly A. Martinez and
Robert J. Lucero and
Tanja Magoc and
Laurence M. Solberg and
Urszula Alina Snigurska and
Sarah E. Ser and
Mattia Prosperi and
Jiang Bian and
Ragnhildur I. Bjarnadottir and
Yonghui Wu},
title = {Identifying Symptoms of Delirium from Clinical Narratives Using Natural
Language Processing},
journal = {CoRR},
volume = {abs/2304.00111},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.00111},
doi = {10.48550/ARXIV.2304.00111},
eprinttype = {arXiv},
eprint = {2304.00111},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-00111.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/ProsperiBBM22,
author = {Mattia Prosperi and
Christina Boucher and
Jiang Bian and
Simone Marini},
title = {Assessing putative bias in prediction of anti-microbial resistance
from real-world genotyping data under explicit causal assumptions},
journal = {Artif. Intell. Medicine},
volume = {130},
pages = {102326},
year = {2022},
url = {https://doi.org/10.1016/j.artmed.2022.102326},
doi = {10.1016/J.ARTMED.2022.102326},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/artmed/ProsperiBBM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MariniMBNP22,
author = {Simone Marini and
Rodrigo A. Mora and
Christina Boucher and
Noelle Robertson Noyes and
Mattia Prosperi},
title = {Towards routine employment of computational tools for antimicrobial
resistance determination via high-throughput sequencing},
journal = {Briefings Bioinform.},
volume = {23},
number = {2},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac020},
doi = {10.1093/BIB/BBAC020},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/MariniMBNP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MariniMRPSM22,
author = {Simone Marini and
Carla Mavian and
Alberto Riva and
Mattia Prosperi and
Marco Salemi and
Brittany Rife Magalis},
title = {Optimizing viral genome subsampling by genetic diversity and temporal
distribution (TARDiS) for phylogenetics},
journal = {Bioinform.},
volume = {38},
number = {3},
pages = {856--860},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab725},
doi = {10.1093/BIOINFORMATICS/BTAB725},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MariniMRPSM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ZhaoHFBPWGB22,
author = {Yunpeng Zhao and
Xing He and
Zheng Feng and
Sarah Bost and
Mattia Prosperi and
Yonghui Wu and
Yi Guo and
Jiang Bian},
title = {Biases in using social media data for public health surveillance:
{A} scoping review},
journal = {Int. J. Medical Informatics},
volume = {164},
pages = {104804},
year = {2022},
url = {https://doi.org/10.1016/j.ijmedinf.2022.104804},
doi = {10.1016/J.IJMEDINF.2022.104804},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/ZhaoHFBPWGB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ZhangLYBHGPHB22,
author = {Hansi Zhang and
Tianchen Lyu and
Pengfei Yin and
Sarah Bost and
Xing He and
Yi Guo and
Mattia Prosperi and
William R. Hogan and
Jiang Bian},
title = {A scoping review of semantic integration of health data and information},
journal = {Int. J. Medical Informatics},
volume = {165},
pages = {104834},
year = {2022},
url = {https://doi.org/10.1016/j.ijmedinf.2022.104834},
doi = {10.1016/J.IJMEDINF.2022.104834},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/ZhangLYBHGPHB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MukherjeeDRAPB22,
author = {Kingshuk Mukherjee and
Daniel Dole{-}Muinos and
Massimiliano Rossi and
Ayomide Ajayi and
Mattia Prosperi and
Christina Boucher},
title = {Finding Overlapping Rmaps via Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3114--3123},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3132534},
doi = {10.1109/TCBB.2021.3132534},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MukherjeeDRAPB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GhoshF0BP22,
author = {Shantanu Ghosh and
Zheng Feng and
Jiang Bian and
Kevin Butler and
Mattia Prosperi},
title = {{DR-VIDAL} - Doubly Robust Variational Information-theoretic Deep
Adversarial Learning for Counterfactual Prediction and Treatment Effect
Estimation},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f006-1.4642154/f006-1.4642155/334-1.4642402/15-1.4642399},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/GhoshF0BP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SnigurskaSPBL22,
author = {Urszula Alina Snigurska and
Sarah E. Ser and
Mattia Prosperi and
Ragnhildur I. Bjarnadottir and
Robert Lucero},
title = {Complementing {ICD} Codes with Nurses' Assessment Data Can Improve
the Identification of Patients with Hearing and Visual Impairments},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/1001-1.4640912/471-1.4640909},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SnigurskaSPBL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MilicchioOP22,
author = {Franco Milicchio and
Marco Oliva and
Mattia Prosperi},
editor = {Donald A. Adjeroh and
Qi Long and
Xinghua Mindy Shi and
Fei Guo and
Xiaohua Hu and
Srinivas Aluru and
Giri Narasimhan and
Jianxin Wang and
Mingon Kang and
Ananda Mondal and
Jin Liu},
title = {An interleaved hardware-accelerated k-mer parser},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2022, Las Vegas, NV, USA, December 6-8, 2022},
pages = {2929--2933},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BIBM55620.2022.9995126},
doi = {10.1109/BIBM55620.2022.9995126},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/MilicchioOP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ProsperiXGBCCMW22,
author = {Mattia Prosperi and
Jie Xu and
Jingchuan Serena Guo and
Jiang Bian and
Wei{-}Han William Chen and
Shantrel Canidate and
Simone Marini and
Mo Wang},
editor = {Donald A. Adjeroh and
Qi Long and
Xinghua Mindy Shi and
Fei Guo and
Xiaohua Hu and
Srinivas Aluru and
Giri Narasimhan and
Jianxin Wang and
Mingon Kang and
Ananda Mondal and
Jin Liu},
title = {Identification of Social and Racial Disparities in Risk of {HIV} Infection
in Florida using Causal {AI} Methods},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2022, Las Vegas, NV, USA, December 6-8, 2022},
pages = {2934--2939},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BIBM55620.2022.9995662},
doi = {10.1109/BIBM55620.2022.9995662},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/ProsperiXGBCCMW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ProsperiMMS22,
author = {Mattia Prosperi and
Brittany Rife Magalis and
Simone Marini and
Marco Salemi},
editor = {Donald A. Adjeroh and
Qi Long and
Xinghua Mindy Shi and
Fei Guo and
Xiaohua Hu and
Srinivas Aluru and
Giri Narasimhan and
Jianxin Wang and
Mingon Kang and
Ananda Mondal and
Jin Liu},
title = {Transmission cluster characteristics of global, regional, and lineage-specific
SARS-CoV-2 phylogenies},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2022, Las Vegas, NV, USA, December 6-8, 2022},
pages = {2940--2944},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BIBM55620.2022.9995364},
doi = {10.1109/BIBM55620.2022.9995364},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/ProsperiMMS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/VizzaTGPPTV22,
author = {Patrizia Vizza and
Giuseppe Tradigo and
Pietro H. Guzzi and
Barbara Puccio and
Mattia Prosperi and
Carlo Torti and
Pierangelo Veltri},
title = {Annotations of Virus Data for Knowledge Enrichment},
booktitle = {10th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2022, Rochester, MN, USA, June 11-14, 2022},
pages = {492--494},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ICHI54592.2022.00084},
doi = {10.1109/ICHI54592.2022.00084},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ichi/VizzaTGPPTV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-07458,
author = {Inyoung Jun and
Simone Marini and
Christina Boucher and
J. Glenn Morris and
Jiang Bian and
Mattia Prosperi},
title = {Joint Application of the Target Trial Causal Framework and Machine
Learning Modeling to Optimize Antibiotic Therapy: Use Case on Acute
Bacterial Skin and Skin Structure Infections due to Methicillin-resistant
Staphylococcus aureus},
journal = {CoRR},
volume = {abs/2207.07458},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.07458},
doi = {10.48550/ARXIV.2207.07458},
eprinttype = {arXiv},
eprint = {2207.07458},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-07458.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-11251,
author = {Zheng Feng and
Mattia Prosperi and
Jiang Bian},
title = {Variational Temporal Deconfounder for Individualized Treatment Effect
Estimation from Longitudinal Observational Data},
journal = {CoRR},
volume = {abs/2207.11251},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.11251},
doi = {10.48550/ARXIV.2207.11251},
eprinttype = {arXiv},
eprint = {2207.11251},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-11251.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ProsperiMB21,
author = {Mattia Prosperi and
Simone Marini and
Christina Boucher},
title = {Fast and exact quantification of motif occurrences in biological sequences},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {445},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04355-6},
doi = {10.1186/S12859-021-04355-6},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ProsperiMB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/JunRCBP21,
author = {Inyoung Jun and
Shannan N. Rich and
Zhaoyi Chen and
Jiang Bian and
Mattia Prosperi},
title = {Challenges in replicating secondary analysis of electronic health
records data with multiple computable phenotypes: {A} case study on
methicillin-resistant \emph{Staphylococcus aureus} bacteremia infections},
journal = {Int. J. Medical Informatics},
volume = {153},
pages = {104531},
year = {2021},
url = {https://doi.org/10.1016/j.ijmedinf.2021.104531},
doi = {10.1016/J.IJMEDINF.2021.104531},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/JunRCBP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/Ghosh00P21,
author = {Shantanu Ghosh and
Jiang Bian and
Yi Guo and
Mattia Prosperi},
title = {Deep propensity network using a sparse autoencoder for estimation
of treatment effects},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {6},
pages = {1197--1206},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa346},
doi = {10.1093/JAMIA/OCAA346},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/Ghosh00P21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/0005ZLPW0021,
author = {Yi Guo and
Yahan Zhang and
Tianchen Lyu and
Mattia Prosperi and
Fei Wang and
Hua Xu and
Jiang Bian},
title = {The application of artificial intelligence and data integration in
{COVID-19} studies: a scoping review},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {9},
pages = {2050--2067},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab098},
doi = {10.1093/JAMIA/OCAB098},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/0005ZLPW0021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/Prosperi0021,
author = {Mattia Prosperi and
Yi Guo and
Jiang Bian},
title = {Bagged random causal networks for interventional queries on observational
biomedical datasets},
journal = {J. Biomed. Informatics},
volume = {115},
pages = {103689},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103689},
doi = {10.1016/J.JBI.2021.103689},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/Prosperi0021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/ChenZ0GPH0S0021,
author = {Zhaoyi Chen and
Hansi Zhang and
Yi Guo and
Thomas J. George and
Mattia Prosperi and
William R. Hogan and
Zhe He and
Elizabeth A. Shenkman and
Fei Wang and
Jiang Bian},
title = {Exploring the feasibility of using real-world data from a large clinical
data research network to simulate clinical trials of Alzheimer's disease},
journal = {npj Digit. Medicine},
volume = {4},
year = {2021},
url = {https://doi.org/10.1038/s41746-021-00452-1},
doi = {10.1038/S41746-021-00452-1},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/ChenZ0GPH0S0021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhaoYLHDT0PVYW021,
author = {Yunpeng Zhao and
Pengfei Yin and
Yongqiu Li and
Xing He and
Jingcheng Du and
Cui Tao and
Yi Guo and
Mattia Prosperi and
Pierangelo Veltri and
Xi Yang and
Yonghui Wu and
Jiang Bian},
title = {Data and Model Biases in Social Media Analyses: {A} Case Study of
{COVID-19} Tweets},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t003-1.4626466/t003-1.4626467/3576524-1.4626474/3577200-1.4626471},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZhaoYLHDT0PVYW021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/ProsperiM21,
author = {Mattia Prosperi and
Simone Marini},
title = {{KARGA:} Multi-platform Toolkit for k-mer-based Antibiotic Resistance
Gene Analysis of High-throughput Sequencing Data},
booktitle = {{IEEE} {EMBS} International Conference on Biomedical and Health Informatics,
{BHI} 2021, Athens, Greece, July 27-30, 2021},
pages = {1--4},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BHI50953.2021.9508479},
doi = {10.1109/BHI50953.2021.9508479},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bhi/ProsperiM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MilicchioP21,
author = {Franco Milicchio and
Mattia Prosperi},
editor = {Yufei Huang and
Lukasz A. Kurgan and
Feng Luo and
Xiaohua Hu and
Yidong Chen and
Edward R. Dougherty and
Andrzej Kloczkowski and
Yaohang Li},
title = {Experimental Survey on Power Dissipation of k-mer-Handling Data Structures
for Mobile Bioinformatics},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2021, Houston, TX, USA, December 9-12, 2021},
pages = {3201--3206},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BIBM52615.2021.9669768},
doi = {10.1109/BIBM52615.2021.9669768},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/MilicchioP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmhi/ProsperiGCSLZ021,
author = {Mattia Prosperi and
Shantanu Ghosh and
Zhaoyi Chen and
Marco Salemi and
Tianchen Lyu and
Jinying Zhao and
Jiang Bian},
title = {Causal {AI} with Real World Data: Do Statins Protect from Alzheimer's
Disease Onset?},
booktitle = {{ICMHI} 2021: 5th International Conference on Medical and Health Informatics,
Kyoto, Japan, May 14-16, 2021},
pages = {296--303},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3472813.3473206},
doi = {10.1145/3472813.3473206},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icmhi/ProsperiGCSLZ021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-03383,
author = {Mattia Prosperi and
Simone Marini and
Christina Boucher and
Jiang Bian},
title = {Assessing putative bias in prediction of anti-microbial resistance
from real-world genotyping data under explicit causal assumptions},
journal = {CoRR},
volume = {abs/2107.03383},
year = {2021},
url = {https://arxiv.org/abs/2107.03383},
eprinttype = {arXiv},
eprint = {2107.03383},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-03383.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlivaMKBBPB20,
author = {Marco Oliva and
Franco Milicchio and
Kaden King and
Grace Benson and
Christina Boucher and
Mattia Prosperi and
Inan{\c{c}} Birol},
title = {Portable nanopore analytics: are we there yet?},
journal = {Bioinform.},
volume = {36},
number = {16},
pages = {4399--4405},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa237},
doi = {10.1093/BIOINFORMATICS/BTAA237},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlivaMKBBPB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/hij/GuoBMLGPS20,
author = {Yi Guo and
Jiang Bian and
Fran{\c{c}}ois Modave and
Qian Li and
Thomas J. George and
Mattia Prosperi and
Elizabeth Shenkman},
title = {Assessing the effect of data integration on predictive ability of
cancer survival models},
journal = {Health Informatics J.},
volume = {26},
number = {1},
year = {2020},
url = {https://doi.org/10.1177/1460458218824692},
doi = {10.1177/1460458218824692},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/hij/GuoBMLGPS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/hij/ZhaoGHWYPJB20,
author = {Yunpeng Zhao and
Yi Guo and
Xing He and
Yonghui Wu and
Xi Yang and
Mattia Prosperi and
Yanghua Jin and
Jiang Bian},
title = {Assessing mental health signals among sexual and gender minorities
using Twitter data},
journal = {Health Informatics J.},
volume = {26},
number = {2},
pages = {765--786},
year = {2020},
url = {https://doi.org/10.1177/1460458219839621},
doi = {10.1177/1460458219839621},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/hij/ZhaoGHWYPJB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/LindbergPBTCCSS20,
author = {David S. Lindberg and
Mattia Prosperi and
Ragnhildur I. Bjarnadottir and
Jaime Thomas and
Marsha Crane and
Zhaoyi Chen and
Kristen Shear and
Laurence M. Solberg and
Urszula Alina Snigurska and
Yonghui Wu and
Yunpeng Xia and
Robert J. Lucero},
title = {Identification of important factors in an inpatient fall risk prediction
model to improve the quality of care using {EHR} and electronic administrative
data: {A} machine-learning approach},
journal = {Int. J. Medical Informatics},
volume = {143},
pages = {104272},
year = {2020},
url = {https://doi.org/10.1016/j.ijmedinf.2020.104272},
doi = {10.1016/J.IJMEDINF.2020.104272},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/LindbergPBTCCSS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ZhangWDTHZPGB20,
author = {Hansi Zhang and
Christopher Wheldon and
Adam G. Dunn and
Cui Tao and
Jinhai Huo and
Rui Zhang and
Mattia Prosperi and
Yi Guo and
Jiang Bian},
title = {Mining Twitter to assess the determinants of health behavior toward
human papillomavirus vaccination in the United States},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {2},
pages = {225--235},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocz191},
doi = {10.1093/JAMIA/OCZ191},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ZhangWDTHZPGB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BianLLVLGWPGHSH20,
author = {Jiang Bian and
Tianchen Lyu and
Alexander T. Loiacono and
Tonatiuh Mendoza Viramontes and
Gloria P. Lipori and
Yi Guo and
Yonghui Wu and
Mattia Prosperi and
Thomas J. George and
Christopher A. Harle and
Elizabeth A. Shenkman and
William R. Hogan},
title = {Assessing the practice of data quality evaluation in a national clinical
data research network through a systematic scoping review in the era
of real-world data},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {12},
pages = {1999--2010},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa245},
doi = {10.1093/JAMIA/OCAA245},
timestamp = {Thu, 16 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/BianLLVLGWPGHSH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ZhangGPB20,
author = {Hansi Zhang and
Yi Guo and
Mattia Prosperi and
Jiang Bian},
title = {An ontology-based documentation of data discovery and integration
process in cancer outcomes research},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {20-S},
number = {4},
pages = {292},
year = {2020},
url = {https://doi.org/10.1186/s12911-020-01270-3},
doi = {10.1186/S12911-020-01270-3},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ZhangGPB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/ProsperiGSKMHRW20,
author = {Mattia Prosperi and
Yi Guo and
Matthew Sperrin and
James S. Koopman and
Jae S. Min and
Xing He and
Shannan N. Rich and
Mo Wang and
Iain E. Buchan and
Jiang Bian},
title = {Causal inference and counterfactual prediction in machine learning
for actionable healthcare},
journal = {Nat. Mach. Intell.},
volume = {2},
number = {7},
pages = {369--375},
year = {2020},
url = {https://doi.org/10.1038/s42256-020-0197-y},
doi = {10.1038/S42256-020-0197-Y},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/ProsperiGSKMHRW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Prosperi0W20,
author = {Mattia Prosperi and
Jiang Bian and
Mo Wang},
editor = {Taesung Park and
Young{-}Rae Cho and
Xiaohua Hu and
Illhoi Yoo and
Hyun Goo Woo and
Jianxin Wang and
Julio C. Facelli and
Seungyoon Nam and
Mingon Kang},
title = {Multivariate Independence Set Search via Progressive Addition for
Conditional Markov Acyclic Networks},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020},
pages = {1477--1481},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/BIBM49941.2020.9313566},
doi = {10.1109/BIBM49941.2020.9313566},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/Prosperi0W20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/TradigoVGMTPGV20,
author = {Giuseppe Tradigo and
Patrizia Vizza and
Gabriel Gabriele and
Maria Mazzitelli and
Carlo Torti and
Mattia Prosperi and
Pietro Hiram Guzzi and
Pierangelo Veltri},
editor = {Taesung Park and
Young{-}Rae Cho and
Xiaohua Hu and
Illhoi Yoo and
Hyun Goo Woo and
Jianxin Wang and
Julio C. Facelli and
Seungyoon Nam and
Mingon Kang},
title = {On the use of clinical based infection data for pandemic case studies},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020},
pages = {2313--2317},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/BIBM49941.2020.9313469},
doi = {10.1109/BIBM49941.2020.9313469},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/TradigoVGMTPGV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieaaie/ZhaoPLGZB20,
author = {Yunpeng Zhao and
Mattia Prosperi and
Tianchen Lyu and
Yi Guo and
Le Zhou and
Jiang Bian},
editor = {Hamido Fujita and
Philippe Fournier{-}Viger and
Moonis Ali and
Jun Sasaki},
title = {Integrating Crowdsourcing and Active Learning for Classification of
Work-Life Events from Tweets},
booktitle = {Trends in Artificial Intelligence Theory and Applications. Artificial
Intelligence Practices - 33rd International Conference on Industrial,
Engineering and Other Applications of Applied Intelligent Systems,
{IEA/AIE} 2020, Kitakyushu, Japan, September 22-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12144},
pages = {333--344},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-55789-8\_30},
doi = {10.1007/978-3-030-55789-8\_30},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ieaaie/ZhaoPLGZB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2003-12139,
author = {Yunpeng Zhao and
Mattia Prosperi and
Tianchen Lyu and
Yi Guo and
Jiang Bian},
title = {Integrating Crowdsourcing and Active Learning for Classification of
Work-Life Events from Tweets},
journal = {CoRR},
volume = {abs/2003.12139},
year = {2020},
url = {https://arxiv.org/abs/2003.12139},
eprinttype = {arXiv},
eprint = {2003.12139},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2003-12139.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoseGSTP19,
author = {Rebecca Rose and
Olga Golosova and
Dmitrii Sukhomlinov and
Aleksey Tiunov and
Mattia Prosperi},
title = {Flexible design of multiple metagenomics classification pipelines
with {UGENE}},
journal = {Bioinform.},
volume = {35},
number = {11},
pages = {1963--1965},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty901},
doi = {10.1093/BIOINFORMATICS/BTY901},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoseGSTP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/LuceroLFBLCCP19,
author = {Robert James Lucero and
David S. Lindberg and
Elizabeth Fehlberg and
Ragnhildur I. Bjarnadottir and
Yin Li and
Jeannie P. Cimiotti and
Marsha Crane and
Mattia Prosperi},
title = {A data-driven and practice-based approach to identify risk factors
associated with hospital-acquired falls: Applying manual and semi-
and fully-automated methods},
journal = {Int. J. Medical Informatics},
volume = {122},
pages = {63--69},
year = {2019},
url = {https://doi.org/10.1016/j.ijmedinf.2018.11.006},
doi = {10.1016/J.IJMEDINF.2018.11.006},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/LuceroLFBLCCP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/HeZRVYGHPHAB19,
author = {Xing He and
Rui Zhang and
Rubina F. Rizvi and
Jake Vasilakes and
Xi Yang and
Yi Guo and
Zhe He and
Mattia Prosperi and
Jinhai Huo and
Jordan Alpert and
Jiang Bian},
title = {{ALOHA:} developing an interactive graph-based visualization for dietary
supplement knowledge graph through user-centered design},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19-S},
number = {4},
pages = {150:1--150:18},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0857-1},
doi = {10.1186/S12911-019-0857-1},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/HeZRVYGHPHAB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/ProsperiB19,
author = {Mattia Prosperi and
Jiang Bian},
title = {Is it time to rethink institutional review boards for the era of big
data?},
journal = {Nat. Mach. Intell.},
volume = {1},
number = {6},
pages = {260},
year = {2019},
url = {https://doi.org/10.1038/s42256-019-0059-7},
doi = {10.1038/S42256-019-0059-7},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/ProsperiB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ProsperiAJSMO19,
author = {Mattia Prosperi and
Taj Azarian and
Judith A. Johnson and
Marco Salemi and
Franco Milicchio and
Marco Oliva},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Unexpected Predictors of Antibiotic Resistance in Housekeeping Genes
of Staphylococcus Aureus},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {259--268},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3342138},
doi = {10.1145/3307339.3342138},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ProsperiAJSMO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TagliamonteWPM19,
author = {Massimiliano S. Tagliamonte and
Sheldon G. Waugh and
Mattia Prosperi and
Volker Mai},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {An Integrated Approach for Efficient Multi-Omics Joint Analysis},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {619--625},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3343476},
doi = {10.1145/3307339.3343476},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/TagliamonteWPM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ModaveZK0GHP019,
author = {Fran{\c{c}}ois Modave and
Yunpeng Zhao and
Janice L. Krieger and
Zhe He and
Yi Guo and
Jinhai Huo and
Mattia Prosperi and
Jiang Bian},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Understanding Perceptions and Attitudes in Breast Cancer Discussions
on Twitter},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {1293--1297},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190435},
doi = {10.3233/SHTI190435},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/ModaveZK0GHP019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ZhaoHPGL019,
author = {Yunpeng Zhao and
Jinhai Huo and
Mattia Prosperi and
Yi Guo and
Yongqiu Li and
Jiang Bian},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Exploring Lung Cancer Screening Discussions on Twitter},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {2011--2012},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190760},
doi = {10.3233/SHTI190760},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/ZhaoHPGL019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-12469,
author = {Fran{\c{c}}ois Modave and
Yunpeng Zhao and
Janice L. Krieger and
Zhe He and
Yi Guo and
Jinhai Huo and
Mattia Prosperi and
Jiang Bian},
title = {Understanding Perceptions and Attitudes in Breast Cancer Discussions
on Twitter},
journal = {CoRR},
volume = {abs/1905.12469},
year = {2019},
url = {http://arxiv.org/abs/1905.12469},
eprinttype = {arXiv},
eprint = {1905.12469},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-12469.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-11624,
author = {Hansi Zhang and
Christopher Wheldon and
Adam G. Dunn and
Cui Tao and
Jinhai Huo and
Rui Zhang and
Mattia Prosperi and
Yi Guo and
Jiang Bian},
title = {Mining Twitter to Assess the Determinants of Health Behavior towards
Human Papillomavirus Vaccination in the United States},
journal = {CoRR},
volume = {abs/1907.11624},
year = {2019},
url = {http://arxiv.org/abs/1907.11624},
eprinttype = {arXiv},
eprint = {1907.11624},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-11624.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ChenBRSBKEP18,
author = {Zhaoyi Chen and
Victoria Y. Bird and
Rupam Ruchi and
Mark S. Segal and
Jiang Bian and
Saeed R. Khan and
Marie{-}Carmelle Elie and
Mattia Prosperi},
title = {Development of a personalized diagnostic model for kidney stone disease
tailored to acute care by integrating large clinical, demographics
and laboratory data: the diagnostic acute care algorithm - kidney
stones {(DACA-KS)}},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {18},
number = {1},
pages = {72:1--72:14},
year = {2018},
url = {https://doi.org/10.1186/s12911-018-0652-4},
doi = {10.1186/S12911-018-0652-4},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ChenBRSBKEP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ProsperiMBM18,
author = {Mattia Prosperi and
Jae Min and
Jiang Bian and
Fran{\c{c}}ois Modave},
title = {Big data hurdles in precision medicine and precision public health},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {18},
number = {1},
pages = {139:1--139:15},
year = {2018},
url = {https://doi.org/10.1186/s12911-018-0719-2},
doi = {10.1186/S12911-018-0719-2},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ProsperiMBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Zhang0HGNMWHPB18,
author = {Hansi Zhang and
Zhe He and
Xing He and
Yi Guo and
David R. Nelson and
Fran{\c{c}}ois Modave and
Yonghui Wu and
William R. Hogan and
Mattia Prosperi and
Jiang Bian},
title = {Computable Eligibility Criteria through Ontology-driven Data Access:
{A} Case Study of Hepatitis {C} Virus Trials},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t005-1.4263615/t005-1.4263616/2976021-1.4263623/2976376-1.4263620},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Zhang0HGNMWHPB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HeZRVYGHPB18,
author = {Xing He and
Rui Zhang and
Rubina F. Rizvi and
Jake Vasilakes and
Xi Yang and
Yi Guo and
Zhe He and
Mattia Prosperi and
Jiang Bian},
editor = {Huiru Jane Zheng and
Zoraida Callejas and
David Griol and
Haiying Wang and
Xiaohua Hu and
Harald H. H. W. Schmidt and
Jan Baumbach and
Julie Dickerson and
Le Zhang},
title = {Prototyping an Interactive Visualization of Dietary Supplement Knowledge
Graph},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2018, Madrid, Spain, December 3-6, 2018},
pages = {1649--1652},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621340},
doi = {10.1109/BIBM.2018.8621340},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/HeZRVYGHPB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fnc/MilicchioOBP18,
author = {Franco Milicchio and
Marco Oliva and
Christina Boucher and
Mattia Prosperi},
editor = {Ansar{-}Ul{-}Haque Yasar and
Elhadi M. Shakshuki},
title = {Third-generation sequencing data analytics on mobile devices: cache
oblivious and out-of-core approaches as a proof-of-concept},
booktitle = {The 15th International Conference on Mobile Systems and Pervasive
Computing (MobiSPC 2018) / The 13th International Conference on Future
Networks and Communications {(FNC-2018)} / Affiliated Workshops, Gran
Canaria, Spain, August 13-15, 2018},
series = {Procedia Computer Science},
volume = {134},
pages = {219--226},
publisher = {Elsevier},
year = {2018},
url = {https://doi.org/10.1016/j.procs.2018.07.164},
doi = {10.1016/J.PROCS.2018.07.164},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/fnc/MilicchioOBP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/simbig/DuBP18,
author = {Xinsong Du and
Jiang Bian and
Mattia Prosperi},
editor = {Juan Antonio Lossio{-}Ventura and
Denisse Mu{\~{n}}ante and
Hugo Alatrista{-}Salas},
title = {An Operational Deep Learning Pipeline for Classifying Life Events
from Individual Tweets},
booktitle = {Information Management and Big Data, 5th International Conference,
SIMBig 2018, Lima, Peru, September 3-5, 2018, Proceedings},
series = {Communications in Computer and Information Science},
volume = {898},
pages = {54--66},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-11680-4\_7},
doi = {10.1007/978-3-030-11680-4\_7},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/simbig/DuBP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fnc/MilicchioP17,
author = {Franco Milicchio and
Mattia Prosperi},
editor = {Elhadi M. Shakshuki and
Ansar{-}Ul{-}Haque Yasar},
title = {Efficient data structures for mobile de novo genome assembly by third-generation
sequencing},
booktitle = {14th International Conference on Mobile Systems and Pervasive Computing
(MobiSPC 2017) / 12th International Conference on Future Networks
and Communications {(FNC} 2017) / Affiliated Workshops, July 24-26,
2017, Leuven, Belgium},
series = {Procedia Computer Science},
volume = {110},
pages = {440--447},
publisher = {Elsevier},
year = {2017},
url = {https://doi.org/10.1016/j.procs.2017.06.115},
doi = {10.1016/J.PROCS.2017.06.115},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/fnc/MilicchioP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fnc/TradigoVMBGVP17,
author = {Giuseppe Tradigo and
Raffaele Vacca and
T. Manini and
Victoria Y. Bird and
Travis A. Gerke and
Pierangelo Veltri and
Mattia Prosperi},
editor = {Elhadi M. Shakshuki and
Ansar{-}Ul{-}Haque Yasar},
title = {A new approach to disentangle genetic and epigenetic components on
disease comorbidities: studying correlation between genotypic and
phenotypic disease networks},
booktitle = {14th International Conference on Mobile Systems and Pervasive Computing
(MobiSPC 2017) / 12th International Conference on Future Networks
and Communications {(FNC} 2017) / Affiliated Workshops, July 24-26,
2017, Leuven, Belgium},
series = {Procedia Computer Science},
volume = {110},
pages = {453--458},
publisher = {Elsevier},
year = {2017},
url = {https://doi.org/10.1016/j.procs.2017.06.119},
doi = {10.1016/J.PROCS.2017.06.119},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/fnc/TradigoVMBGVP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/HuoGG0PMB17,
author = {Tianyao Huo and
Thomas J. George Jr. and
Yi Guo and
Zhe He and
Mattia Prosperi and
Fran{\c{c}}ois Modave and
Jiang Bian},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {Explore Care Pathways of Colorectal Cancer Patients with Social Network
Analysis},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {1270},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-1270},
doi = {10.3233/978-1-61499-830-3-1270},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/HuoGG0PMB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MilicchioRBMP16,
author = {Franco Milicchio and
Rebecca Rose and
Jiang Bian and
Jae Min and
Mattia Prosperi},
title = {Visual programming for next-generation sequencing data analytics},
journal = {BioData Min.},
volume = {9},
pages = {16},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0095-3},
doi = {10.1186/S13040-016-0095-3},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MilicchioRBMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ProsperiPITZ16,
author = {Mattia Prosperi and
Alejandro Pironti and
Francesca Incardona and
Giuseppe Tradigo and
Maurizio Zazzi},
title = {Predicting human-immunodeficiency virus rebound after therapy initiation/switch
using genetic, laboratory, and clinical data},
booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
WA, USA, October 2-5, 2016},
pages = {611--615},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2975167.2985846},
doi = {10.1145/2975167.2985846},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ProsperiPITZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MilicchioTVP16,
author = {Franco Milicchio and
Giuseppe Tradigo and
Pierangelo Veltri and
Mattia Prosperi},
title = {High-performance data structures for de novo assembly of genomes:
cache oblivious generic programming},
booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
WA, USA, October 2-5, 2016},
pages = {657--662},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2975167.2985691},
doi = {10.1145/2975167.2985691},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/MilicchioTVP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TradigoCAGPVP16,
author = {Giuseppe Tradigo and
Francesca Cristiano and
Stefano Alcaro and
Sergio Greco and
Gianluca Pollastri and
Pierangelo Veltri and
Mattia Prosperi},
title = {G-quadruplex Structure Prediction and integration in the GenData2020
data model},
booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
WA, USA, October 2-5, 2016},
pages = {663--670},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2975167.2985692},
doi = {10.1145/2975167.2985692},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/TradigoCAGPVP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/CristianoVPT16,
author = {Francesca Cristiano and
Pierangelo Veltri and
Mattia Prosperi and
Giuseppe Tradigo},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {On the identification of long non-coding RNAs from RNA-seq},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {1103--1106},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822675},
doi = {10.1109/BIBM.2016.7822675},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/CristianoVPT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/MilicchioBP16,
author = {Franco Milicchio and
Iain E. Buchan and
Mattia C. F. Prosperi},
title = {A* fast and scalable high-throughput sequencing data error correction
via oligomers},
booktitle = {2016 {IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2016, Chiang Mai, Thailand, October
5-7, 2016},
pages = {1--9},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/CIBCB.2016.7758117},
doi = {10.1109/CIBCB.2016.7758117},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/MilicchioBP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/petra/MilicchioP16,
author = {Franco Milicchio and
Mattia Prosperi},
title = {Accessible Tourism for the Deaf via Mobile Apps},
booktitle = {Proceedings of the 9th {ACM} International Conference on PErvasive
Technologies Related to Assistive Environments, {PETRA} 2016, Corfu
Island, Greece, June 29 - July 1, 2016},
pages = {23},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2910674.2910694},
doi = {10.1145/2910674.2910694},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/petra/MilicchioP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/FraccaroBPSBP15,
author = {Paolo Fraccaro and
Benjamin Brown and
Mattia Prosperi and
Matthew Sperrin and
Iain E. Buchan and
Niels Peek},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {Development and preliminary validation of a dynamic, patient-tailored
method to detect abnormal laboratory test results},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {701--705},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-701},
doi = {10.3233/978-1-61499-564-7-701},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/FraccaroBPSBP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ProsperiIHLBE14,
author = {Mattia C. F. Prosperi and
Sarah L. Ingham and
Anthony Howell and
Fiona Lalloo and
Iain E. Buchan and
Dafydd Gareth Evans},
title = {Can multiple {SNP} testing in {BRCA2} and {BRCA1} female carriers
be used to improve risk prediction models in conjunction with clinical
assessment?},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {14},
pages = {87},
year = {2014},
url = {https://doi.org/10.1186/1472-6947-14-87},
doi = {10.1186/1472-6947-14-87},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ProsperiIHLBE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NorstromVHPCHHKS14,
author = {Melissa M. Norstr{\"{o}}m and
Nazle M. Veras and
Wei Huang and
Mattia C. F. Prosperi and
Jennifer Cook and
Wendy Hartogensis and
Frederick M. Hecht and
Annika C. Karlsoon and
Marco Salemi},
title = {Baseline CD4\({}^{\mbox{+}}\) {T} Cell Counts Correlates with {HIV-1}
Synonymous Rate in HLA-B*5701 Subjects with Different Risk of Disease
Progression},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {9},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003830},
doi = {10.1371/JOURNAL.PCBI.1003830},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/NorstromVHPCHHKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WilliamsBPA14,
author = {Richard Williams and
Iain E. Buchan and
Mattia Prosperi and
John D. Ainsworth},
title = {Using String Metrics to Identify Patient Journeys through Care Pathways},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-223-1.1545004/a-224-1.1545001},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WilliamsBPA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/MilicchioP14,
author = {Franco Milicchio and
Mattia C. F. Prosperi},
title = {HErCoOl: High-Throughput Error Correction by Oligomers},
booktitle = {2014 {IEEE} 27th International Symposium on Computer-Based Medical
Systems, New York, NY, USA, May 27-29, 2014},
pages = {227--232},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/CBMS.2014.7},
doi = {10.1109/CBMS.2014.7},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/MilicchioP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProsperiS12,
author = {Mattia C. F. Prosperi and
Marco Salemi},
title = {QuRe: software for viral quasispecies reconstruction from next-generation
sequencing data},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {132--133},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr627},
doi = {10.1093/BIOINFORMATICS/BTR627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProsperiS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ProsperiPBARVSCU11,
author = {Mattia C. F. Prosperi and
Luciano Prosperi and
Alessandro Bruselles and
Isabella Abbate and
Gabriella Rozera and
Donatella Vincenti and
Maria Carmela Solmone and
Maria Rosaria Capobianchi and
Giovanni Ulivi},
title = {Combinatorial analysis and algorithms for quasispecies reconstruction
using next-generation sequencing},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-5},
doi = {10.1186/1471-2105-12-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ProsperiPBARVSCU11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ProsperiGFMBCPBMPBGPZLa11,
author = {Mattia C. F. Prosperi and
Simona Di Giambenedetto and
Iuri Fanti and
Genny Meini and
Bianca Bruzzone and
Annapaola Callegaro and
Giovanni Penco and
Patrizia Bagnarelli and
Valeria Micheli and
Elisabetta Paolini and
Antonio Di Biagio and
Valeria Ghisetti and
Massimo Di Pietro and
Maurizio Zazzi and
Andrea De Luca and
et al.},
title = {A Prognostic Model for Estimating the Time to Virologic Failure in
{HIV-1} Infected Patients Undergoing a New Combination Antiretroviral
Therapy Regimen},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {11},
pages = {40},
year = {2011},
url = {https://doi.org/10.1186/1472-6947-11-40},
doi = {10.1186/1472-6947-11-40},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ProsperiGFMBCPBMPBGPZLa11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProsperiDILZU09,
author = {Mattia C. F. Prosperi and
Roberto D'Autilia and
Francesca Incardona and
Andrea De Luca and
Maurizio Zazzi and
Giovanni Ulivi},
title = {Stochastic modelling of genotypic drug-resistance for human immunodeficiency
virus towards long-term combination therapy optimization},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1040--1047},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn568},
doi = {10.1093/BIOINFORMATICS/BTN568},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProsperiDILZU09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/arobots/GasparriP08,
author = {Andrea Gasparri and
Mattia Prosperi},
title = {A bacterial colony growth algorithm for mobile robot localization},
journal = {Auton. Robots},
volume = {24},
number = {4},
pages = {349--364},
year = {2008},
url = {https://doi.org/10.1007/s10514-007-9076-1},
doi = {10.1007/S10514-007-9076-1},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/arobots/GasparriP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icra/GasparriP08,
author = {Andrea Gasparri and
Mattia Prosperi},
title = {A bacterial colony growth framework for collaborative multi-robot
localization},
booktitle = {2008 {IEEE} International Conference on Robotics and Automation, {ICRA}
2008, May 19-23, 2008, Pasadena, California, {USA}},
pages = {2806--2811},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/ROBOT.2008.4543635},
doi = {10.1109/ROBOT.2008.4543635},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icra/GasparriP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Rosen-ZviAPANSSSPIKZL08,
author = {Michal Rosen{-}Zvi and
Andr{\'{e}} Altmann and
Mattia Prosperi and
Ehud Aharoni and
Hani Neuvirth and
Anders S{\"{o}}nnerborg and
Eugen Sch{\"{u}}lter and
Daniel Struck and
Yardena Peres and
Francesca Incardona and
Rolf Kaiser and
Maurizio Zazzi and
Thomas Lengauer},
title = {Selecting anti-HIV therapies based on a variety of genomic and clinical
factors},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {399--406},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn141},
doi = {10.1093/BIOINFORMATICS/BTN141},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/Rosen-ZviAPANSSSPIKZL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/sci/ProsperiU08,
author = {Mattia Prosperi and
Giovanni Ulivi},
editor = {Ajith Abraham and
Crina Grosan and
Witold Pedrycz},
title = {Evolutionary Fuzzy Modelling for Drug Resistant {HIV-1} Treatment
Optimization},
booktitle = {Engineering Evolutionary Intelligent Systems},
series = {Studies in Computational Intelligence},
volume = {82},
pages = {251--287},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-75396-4\_9},
doi = {10.1007/978-3-540-75396-4\_9},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/sci/ProsperiU08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/ProsperiUZ07,
author = {Mattia C. F. Prosperi and
Giovanni Ulivi and
Maurizio Zazzi},
title = {Statistical Comparison of Machine Learning Techniques for Treatment
Optimisation of Drug-Resistant {HIV-1}},
booktitle = {20th {IEEE} International Symposium on Computer-Based Medical Systems
{(CBMS} 2007), 20-22 June 2007, Maribor, Slovenia},
pages = {427--432},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/CBMS.2007.100},
doi = {10.1109/CBMS.2007.100},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/ProsperiUZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/FantiPUM07,
author = {Iuri Fanti and
Mattia C. F. Prosperi and
Giovanni Ulivi and
Alessandro Micarelli},
title = {{HIV-1} Coreceptor Usage Prediction via Indexed Local Kernel Smoothing
Methods and Grid-Based Multiple Statistical Validation},
booktitle = {20th {IEEE} International Symposium on Computer-Based Medical Systems
{(CBMS} 2007), 20-22 June 2007, Maribor, Slovenia},
pages = {465--470},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/CBMS.2007.55},
doi = {10.1109/CBMS.2007.55},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/FantiPUM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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