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ORCIDBibTeX records: Falk Schreiber
@article{DBLP:journals/jcheminf/JaegerHonzKS24,
author = {Sabrina Jaeger{-}Honz and
Karsten Klein and
Falk Schreiber},
title = {Systematic analysis, aggregation and visualisation of interaction
fingerprints for molecular dynamics simulation data},
journal = {J. Cheminformatics},
volume = {16},
number = {1},
pages = {28},
year = {2024},
url = {https://doi.org/10.1186/s13321-024-00822-3},
doi = {10.1186/S13321-024-00822-3},
timestamp = {Thu, 21 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/JaegerHonzKS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/FeyerPKBKKBSK24,
author = {Stefan P. Feyer and
Bruno Pinaud and
Stephen G. Kobourov and
Nicolas Brich and
Michael Krone and
Andreas Kerren and
Michael Behrisch and
Falk Schreiber and
Karsten Klein},
title = {2D, 2.5D, or 3D? An Exploratory Study on Multilayer Network Visualisations
in Virtual Reality},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {30},
number = {1},
pages = {469--479},
year = {2024},
url = {https://doi.org/10.1109/TVCG.2023.3327402},
doi = {10.1109/TVCG.2023.3327402},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tvcg/FeyerPKBKKBSK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/AichemKKS24,
author = {Michael Aichem and
Karsten Klein and
Stephen G. Kobourov and
Falk Schreiber},
title = {Supplemental Materials for: "De-emphasise, Aggregate, and Hide:
{A} Study on Interactive Visual Transformations for Group Structures
in Network Visualisations" {(2.0)}},
publisher = {DaRUS},
year = {2024},
month = feb,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3706{\&}version=2.0}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3706\&\#38;version=2.0},
timestamp = {Wed, 27 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/AichemKKS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KernJSS23,
author = {Martin Kern and
Sabrina Jaeger{-}Honz and
Falk Schreiber and
Bj{\"{o}}rn Sommer},
title = {APL@voro - interactive visualization and analysis of cell membrane
simulations},
journal = {Bioinform.},
volume = {39},
number = {2},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad083},
doi = {10.1093/BIOINFORMATICS/BTAD083},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KernJSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KonigGGGHKMNSWS23,
author = {Matthias K{\"{o}}nig and
Padraig Gleeson and
Martin Golebiewski and
Thomas E. Gorochowski and
Michael Hucka and
Sarah M. Keating and
Chris J. Myers and
David P. Nickerson and
Bj{\"{o}}rn Sommer and
Dagmar Waltemath and
Falk Schreiber},
title = {Specifications of standards in systems and synthetic biology: status
and developments in 2022 and the {COMBINE} meeting 2022},
journal = {J. Integr. Bioinform.},
volume = {20},
number = {1},
year = {2023},
url = {https://doi.org/10.1515/jib-2023-0004},
doi = {10.1515/JIB-2023-0004},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KonigGGGHKMNSWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vciba/ZhangKSS23,
author = {Ying Zhang and
Karsten Klein and
Falk Schreiber and
Kamran Safi},
title = {Beyond the horizon: immersive developments for animal ecology research},
journal = {Vis. Comput. Ind. Biomed. Art},
volume = {6},
number = {1},
pages = {11},
year = {2023},
url = {https://doi.org/10.1186/s42492-023-00138-3},
doi = {10.1186/S42492-023-00138-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/vciba/ZhangKSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/EadesGKESHS23,
author = {Peter Eades and
Niklas Gr{\"{o}}ne and
Karsten Klein and
Patrick Eades and
Leo Schreiber and
Ulf Hailer and
Falk Schreiber},
editor = {Michael A. Bekos and
Markus Chimani},
title = {CelticGraph: Drawing Graphs as Celtic Knots and Links},
booktitle = {Graph Drawing and Network Visualization - 31st International Symposium,
{GD} 2023, Isola delle Femmine, Palermo, Italy, September 20-22, 2023,
Revised Selected Papers, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {14465},
pages = {18--35},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-49272-3\_2},
doi = {10.1007/978-3-031-49272-3\_2},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gd/EadesGKESHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/AichemKKS23,
author = {Michael Aichem and
Karsten Klein and
Stephen G. Kobourov and
Falk Schreiber},
title = {Supplemental Materials for: "De-emphasise, Aggregate, and Hide:
Exploring the Effects of Group-Based Visual Transformations for Interactive
Clutter Reduction in Network Visualisations" {(1.0)}},
publisher = {DaRUS},
year = {2023},
month = sep,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3706{\&}version=1.0}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3706\&\#38;version=1.0},
timestamp = {Wed, 27 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/AichemKKS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/FeyerPKBKKSK23,
author = {Stefan P. Feyer and
Bruno Pinaud and
Stephen G. Kobourov and
Nicolas Brich and
Michael Krone and
Andreas Kerren and
Falk Schreiber and
Karsten Klein},
title = {Supplemental Material: "2D, 2.5D, or 3D? An Exploratory Study
on Multilayer Network Visualizations in Virtual Reality" {(1.0)}},
publisher = {DaRUS},
year = {2023},
month = aug,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3387{\&}version=1.0}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3387\&\#38;version=1.0},
timestamp = {Tue, 26 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/FeyerPKBKKSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/GarkovMBWS23,
author = {Dimitar Garkov and
Christoph M{\"{u}}ller and
Matthias Braun and
Daniel Weiskopf and
Falk Schreiber},
title = {"Research Data Curation in Visualization : Position Paper"
(Data) {(1.2)}},
publisher = {DaRUS},
year = {2023},
month = jan,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144{\&}version=1.2}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144\&\#38;version=1.2},
timestamp = {Thu, 07 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/GarkovMBWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/GarkovMBWS23a,
author = {Dimitar Garkov and
Christoph M{\"{u}}ller and
Matthias Braun and
Daniel Weiskopf and
Falk Schreiber},
title = {"Research Data Curation in Visualization : Position Paper"
(Data) {(1.3)}},
publisher = {DaRUS},
year = {2023},
month = aug,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144{\&}version=1.3}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144\&\#38;version=1.3},
timestamp = {Thu, 07 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/GarkovMBWS23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-10674,
author = {Stefan P. Feyer and
Bruno Pinaud and
Stephen G. Kobourov and
Nicolas Brich and
Michael Krone and
Andreas Kerren and
Michael Behrisch and
Falk Schreiber and
Karsten Klein},
title = {2D, 2.5D, or 3D? An Exploratory Study on Multilayer Network Visualisations
in Virtual Reality},
journal = {CoRR},
volume = {abs/2307.10674},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.10674},
doi = {10.48550/ARXIV.2307.10674},
eprinttype = {arXiv},
eprint = {2307.10674},
timestamp = {Wed, 26 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-10674.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-02852,
author = {Peter Eades and
Niklas Gr{\"{o}}ne and
Karsten Klein and
Patrick Eades and
Leo Schreiber and
Ulf Hailer and
Falk Schreiber},
title = {CelticGraph: Drawing Graphs as Celtic Knots and Links},
journal = {CoRR},
volume = {abs/2309.02852},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.02852},
doi = {10.48550/ARXIV.2309.02852},
eprinttype = {arXiv},
eprint = {2309.02852},
timestamp = {Fri, 22 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-02852.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NiarakisWGSKNCS22,
author = {Anna Niarakis and
Dagmar Waltemath and
James A. Glazier and
Falk Schreiber and
Sarah M. Keating and
David P. Nickerson and
Claudine Chaouiya and
Anne Siegel and
Vincent No{\"{e}}l and
Henning Hermjakob and
Tom{\'{a}}s Helikar and
Sylvain Soliman and
Laurence Calzone},
title = {Addressing \emph{barriers in comprehensiveness, accessibility, reusability,
interoperability and reproducibility of computational models in systems
biology}},
journal = {Briefings Bioinform.},
volume = {23},
number = {4},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac212},
doi = {10.1093/BIB/BBAC212},
timestamp = {Wed, 05 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/NiarakisWGSKNCS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cgf/KrausFSKEKS22,
author = {Matthias Kraus and
Johannes Fuchs and
Bj{\"{o}}rn Sommer and
Karsten Klein and
Ulrich Engelke and
Daniel A. Keim and
Falk Schreiber},
title = {Immersive Analytics with Abstract 3D Visualizations: {A} Survey},
journal = {Comput. Graph. Forum},
volume = {41},
number = {1},
pages = {201--229},
year = {2022},
url = {https://doi.org/10.1111/cgf.14430},
doi = {10.1111/CGF.14430},
timestamp = {Thu, 18 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cgf/KrausFSKEKS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/SchreiberW22,
author = {Falk Schreiber and
Daniel Weiskopf},
title = {Quantitative visual computing},
journal = {it Inf. Technol.},
volume = {64},
number = {4-5},
pages = {119--120},
year = {2022},
url = {https://doi.org/10.1515/itit-2022-0048},
doi = {10.1515/ITIT-2022-0048},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/it/SchreiberW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/KleinSS22,
author = {Karsten Klein and
Michael Sedlmair and
Falk Schreiber},
title = {Immersive analytics: An overview},
journal = {it Inf. Technol.},
volume = {64},
number = {4-5},
pages = {155--168},
year = {2022},
url = {https://doi.org/10.1515/itit-2022-0037},
doi = {10.1515/ITIT-2022-0037},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/it/KleinSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberC22,
author = {Falk Schreiber and
Tobias Czauderna},
title = {Design considerations for representing systems biology information
with the Systems Biology Graphical Notation},
journal = {J. Integr. Bioinform.},
volume = {19},
number = {2},
year = {2022},
url = {https://doi.org/10.1515/jib-2022-0024},
doi = {10.1515/JIB-2022-0024},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SchreiberC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AichemKCGZLS22,
author = {Michael Aichem and
Karsten Klein and
Tobias Czauderna and
Dimitar Garkov and
Jinxin Zhao and
Jian Li and
Falk Schreiber},
title = {Towards a hybrid user interface for the visual exploration of large
biomolecular networks using virtual reality},
journal = {J. Integr. Bioinform.},
volume = {19},
number = {4},
year = {2022},
url = {https://doi.org/10.1515/jib-2022-0034},
doi = {10.1515/JIB-2022-0034},
timestamp = {Tue, 31 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/AichemKCGZLS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/JoosJSK022,
author = {Lucas Joos and
Sabrina Jaeger{-}Honz and
Falk Schreiber and
Daniel A. Keim and
Karsten Klein},
title = {Visual Comparison of Networks in {VR}},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {28},
number = {11},
pages = {3651--3661},
year = {2022},
url = {https://doi.org/10.1109/TVCG.2022.3203001},
doi = {10.1109/TVCG.2022.3203001},
timestamp = {Fri, 04 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tvcg/JoosJSK022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vciba/BienrothNGKJRS22,
author = {Denis Bienroth and
Hieu T. Nim and
Dimitar Garkov and
Karsten Klein and
Sabrina Jaeger{-}Honz and
Mirana Ramialison and
Falk Schreiber},
title = {Spatially resolved transcriptomics in immersive environments},
journal = {Vis. Comput. Ind. Biomed. Art},
volume = {5},
number = {1},
pages = {2},
year = {2022},
url = {https://doi.org/10.1186/s42492-021-00098-6},
doi = {10.1186/S42492-021-00098-6},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/vciba/BienrothNGKJRS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/beliv/GarkovMBWS22,
author = {Dimitar Garkov and
Christoph M{\"{u}}ller and
Matthias Braun and
Daniel Weiskopf and
Falk Schreiber},
title = {Research Data Curation in Visualization : Position Paper},
booktitle = {{IEEE} Evaluation and Beyond - Methodological Approaches for Visualization,
{BELIV} 2022, Oklahoma City, OK, USA, October 17, 2022},
pages = {56--65},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BELIV57783.2022.00011},
doi = {10.1109/BELIV57783.2022.00011},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/beliv/GarkovMBWS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/GarkovMBWS22,
author = {Dimitar Garkov and
Christoph M{\"{u}}ller and
Matthias Braun and
Daniel Weiskopf and
Falk Schreiber},
title = {"Research Data Curation in Visualization : Position Paper"
(Data) {(1.0)}},
publisher = {DaRUS},
year = {2022},
month = sep,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144{\&}version=1.0}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144\&\#38;version=1.0},
timestamp = {Thu, 07 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/GarkovMBWS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/GarkovMBWS22a,
author = {Dimitar Garkov and
Christoph M{\"{u}}ller and
Matthias Braun and
Daniel Weiskopf and
Falk Schreiber},
title = {"Research Data Curation in Visualization : Position Paper"
(Data) {(1.1)}},
publisher = {DaRUS},
year = {2022},
month = nov,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144{\&}version=1.1}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-3144\&\#38;version=1.1},
timestamp = {Thu, 07 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/GarkovMBWS22a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/GarkovMKES22,
author = {Dimitar Garkov and
Christoph M{\"{u}}ller and
Karsten Klein and
Thomas Ertl and
Falk Schreiber},
title = {Guidelines on Replication and Research Data Management by Task Force
{A} {(1.0)}},
publisher = {DaRUS},
year = {2022},
month = may,
howpublished = {\url{https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-2843{\&}version=1.0}},
note = {Accessed on YYYY-MM-DD.},
url = {https://darus.uni-stuttgart.de/dataset.xhtml?persistentId=doi:10.18419/darus-2843\&\#38;version=1.0},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/GarkovMKES22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KleinGRBS21,
author = {Karsten Klein and
Dimitar Garkov and
Sina R{\"{u}}tschlin and
Thomas B{\"{o}}ttcher and
Falk Schreiber},
title = {{QSDB} - a graphical Quorum Sensing Database},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab058},
doi = {10.1093/DATABASE/BAAB058},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KleinGRBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KleinGRBS21a,
author = {Karsten Klein and
Dimitar Garkov and
Sina R{\"{u}}tschlin and
Thomas B{\"{o}}ttcher and
Falk Schreiber},
title = {Corrigendum to: {QSDB} - a graphical Quorum Sensing Database},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab071},
doi = {10.1093/DATABASE/BAAB071},
timestamp = {Wed, 22 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/KleinGRBS21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AichemCZZKKLS21,
author = {Michael Aichem and
Tobias Czauderna and
Yan Zhu and
Jinxin Zhao and
Matthias Klapperst{\"{u}}ck and
Karsten Klein and
Jian Li and
Falk Schreiber},
title = {Visual exploration of large metabolic models},
journal = {Bioinform.},
volume = {37},
number = {23},
pages = {4460--4468},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab335},
doi = {10.1093/BIOINFORMATICS/BTAB335},
timestamp = {Wed, 20 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AichemCZZKKLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cga/KrausKFKSSR21,
author = {Matthias Kraus and
Karsten Klein and
Johannes Fuchs and
Daniel A. Keim and
Falk Schreiber and
Michael Sedlmair and
Theresa{-}Marie Rhyne},
title = {The Value of Immersive Visualization},
journal = {{IEEE} Computer Graphics and Applications},
volume = {41},
number = {4},
pages = {125--132},
year = {2021},
url = {https://doi.org/10.1109/MCG.2021.3075258},
doi = {10.1109/MCG.2021.3075258},
timestamp = {Thu, 18 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cga/KrausKFKSSR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberGGGHKK21,
author = {Falk Schreiber and
Padraig Gleeson and
Martin Golebiewski and
Thomas E. Gorochowski and
Michael Hucka and
Sarah M. Keating and
Matthias K{\"{o}}nig and
Chris J. Myers and
David P. Nickerson and
Bj{\"{o}}rn Sommer and
Dagmar Waltemath},
title = {Specifications of standards in systems and synthetic biology: status
and developments in 2021},
journal = {J. Integr. Bioinform.},
volume = {18},
number = {3},
year = {2021},
url = {https://doi.org/10.1515/jib-2021-0026},
doi = {10.1515/JIB-2021-0026},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SchreiberGGGHKK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jvis/KleinJMWHBS21,
author = {Karsten Klein and
Sabrina Jaeger and
J{\"{o}}rg Melzheimer and
Bettina Wachter and
Heribert Hofer and
Artur Baltabayev and
Falk Schreiber},
title = {Visual analytics of sensor movement data for cheetah behaviour analysis},
journal = {J. Vis.},
volume = {24},
number = {4},
pages = {807--825},
year = {2021},
url = {https://doi.org/10.1007/s12650-021-00742-6},
doi = {10.1007/S12650-021-00742-6},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jvis/KleinJMWHBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jvis/KleinAZESS21,
author = {Karsten Klein and
Michael Aichem and
Ying Zhang and
Stefan Erk and
Bj{\"{o}}rn Sommer and
Falk Schreiber},
title = {TEAMwISE: synchronised immersive environments for exploration and
analysis of animal behaviour},
journal = {J. Vis.},
volume = {24},
number = {4},
pages = {845--859},
year = {2021},
url = {https://doi.org/10.1007/s12650-021-00746-2},
doi = {10.1007/S12650-021-00746-2},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jvis/KleinAZESS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberSCGGHK20,
author = {Falk Schreiber and
Bj{\"{o}}rn Sommer and
Tobias Czauderna and
Martin Golebiewski and
Thomas E. Gorochowski and
Michael Hucka and
Sarah M. Keating and
Matthias K{\"{o}}nig and
Chris J. Myers and
David P. Nickerson and
Dagmar Waltemath},
title = {Specifications of standards in systems and synthetic biology: status
and developments in 2020},
journal = {J. Integr. Bioinform.},
volume = {17},
number = {2-3},
year = {2020},
url = {https://doi.org/10.1515/jib-2020-0022},
doi = {10.1515/JIB-2020-0022},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SchreiberSCGGHK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WaltemathGBGHHI20,
author = {Dagmar Waltemath and
Martin Golebiewski and
Michael L. Blinov and
Padraig Gleeson and
Henning Hermjakob and
Michael Hucka and
Esther Thea Inau and
Sarah M. Keating and
Matthias K{\"{o}}nig and
Olga Krebs and
Rahuman S. Malik{-}Sheriff and
David P. Nickerson and
Ernst Oberortner and
Herbert M. Sauro and
Falk Schreiber and
Lucian P. Smith and
Melanie I. Stefan and
Ulrike Wittig and
Chris J. Myers},
title = {The first 10 years of the international coordination network for standards
in systems and synthetic biology {(COMBINE)}},
journal = {J. Integr. Bioinform.},
volume = {17},
number = {2-3},
year = {2020},
url = {https://doi.org/10.1515/jib-2020-0005},
doi = {10.1515/JIB-2020-0005},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/WaltemathGBGHHI20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apvis/KotlarekKMEK0S20,
author = {Joseph Kotlarek and
Oh{-}Hyun Kwon and
Kwan{-}Liu Ma and
Peter Eades and
Andreas Kerren and
Karsten Klein and
Falk Schreiber},
title = {A Study of Mental Maps in Immersive Network Visualization},
booktitle = {2020 {IEEE} Pacific Visualization Symposium, PacificVis 2020, Tianjin,
China, June 3-5, 2020},
pages = {1--10},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/PacificVis48177.2020.4722},
doi = {10.1109/PACIFICVIS48177.2020.4722},
timestamp = {Tue, 19 May 2020 18:04:13 +0200},
biburl = {https://dblp.org/rec/conf/apvis/KotlarekKMEK0S20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-06462,
author = {Joseph Kotlarek and
Oh{-}Hyun Kwon and
Kwan{-}Liu Ma and
Peter Eades and
Andreas Kerren and
Karsten Klein and
Falk Schreiber},
title = {A Study of Mental Maps in Immersive Network Visualization},
journal = {CoRR},
volume = {abs/2001.06462},
year = {2020},
url = {https://arxiv.org/abs/2001.06462},
eprinttype = {arXiv},
eprint = {2001.06462},
timestamp = {Fri, 24 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-06462.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RougnyTMBCBDMDB19,
author = {Adrien Rougny and
Vasundra Tour{\'{e}} and
Stuart L. Moodie and
Irina Balaur and
Tobias Czauderna and
Hanna Borlinghaus and
Ugur Dogrusoz and
Alexander Mazein and
Andreas Dr{\"{a}}ger and
Michael L. Blinov and
Alice Vill{\'{e}}ger and
Robin Haw and
Emek Demir and
Huaiyu Mi and
Anatoly A. Sorokin and
Falk Schreiber and
Augustin Luna},
title = {Systems Biology Graphical Notation: Process Description language Level
1 Version 2.0},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {2},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-0022},
doi = {10.1515/JIB-2019-0022},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/RougnyTMBCBDMDB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberSBGGHK19,
author = {Falk Schreiber and
Bj{\"{o}}rn Sommer and
Gary D. Bader and
Padraig Gleeson and
Martin Golebiewski and
Michael Hucka and
Sarah M. Keating and
Matthias K{\"{o}}nig and
Chris J. Myers and
David P. Nickerson and
Dagmar Waltemath},
title = {Specifications of Standards in Systems and Synthetic Biology: Status
and Developments in 2019},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {2},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-0035},
doi = {10.1515/JIB-2019-0035},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SchreiberSBGGHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GarkovKKS19,
author = {Dimitar Garkov and
Karsten Klein and
Christian Klukas and
Falk Schreiber},
title = {Mental-Map Preserving Visualisation of Partitioned Networks in Vanted},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {3},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-0026},
doi = {10.1515/JIB-2019-0026},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/GarkovKKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FriedrichsSCISS19,
author = {Marcel Friedrichs and
Alban Shoshi and
Piotr Chmura and
Jon C. Ison and
Veit Schw{\"{a}}mmle and
Falk Schreiber and
Ralf Hofest{\"{a}}dt and
Bj{\"{o}}rn Sommer},
title = {JIB.tools 2.0 - {A} Bioinformatics Registry for Journal Published
Tools with Interoperability to bio.tools},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {4},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-0059},
doi = {10.1515/JIB-2019-0059},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/FriedrichsSCISS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apvis/Jaeger0JZRKYPRS19,
author = {Sabrina Jaeger and
Karsten Klein and
Lucas Joos and
Johannes Zagermann and
Michael de Ridder and
Jinman Kim and
Jean Yee Hwa Yang and
Ulrike Pfeil and
Harald Reiterer and
Falk Schreiber},
title = {Challenges for Brain Data Analysis in {VR} Environments},
booktitle = {{IEEE} Pacific Visualization Symposium, PacificVis 2019, Bangkok,
Thailand, April 23-26, 2019},
pages = {42--46},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/PacificVis.2019.00013},
doi = {10.1109/PACIFICVIS.2019.00013},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/apvis/Jaeger0JZRKYPRS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ei-sda/0001DAMRWZ0KS19,
author = {Bj{\"{o}}rn Sommer and
Alexandra Diehl and
Michael Aichem and
Philipp Meschenmoser and
Kim Rehberg and
David Weber and
Ying Zhang and
Karsten Klein and
Daniel A. Keim and
Falk Schreiber},
editor = {Andrew J. Woods and
Gregg E. Favalora and
Nicolas S. Holliman and
Takashi Kawai},
title = {Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation},
booktitle = {Stereoscopic Displays and Applications XXX, Burlingame, CA, USA, January
13-17, 2019},
pages = {1--15},
publisher = {Society for Imaging Science and Technology},
year = {2019},
url = {https://doi.org/10.2352/ISSN.2470-1173.2019.3.SDA-641},
doi = {10.2352/ISSN.2470-1173.2019.3.SDA-641},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ei-sda/0001DAMRWZ0KS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ervr/SommerFK0WFFFNW19,
author = {Bjorn Sommer and
Stefan P. Feyer and
Daniel Klinkhammer and
Karsten Klein and
Jonathan Wieland and
Daniel Fink and
Wolfgang Fiedler and
Andrea Flack and
M{\'{a}}t{\'{e}} Nagy and
Martin Wikelski and
Harald Reiterer and
Falk Schreiber},
editor = {Margaret Dolinsky and
Ian E. McDowall},
title = {BinocularsVR - {A} {VR} experience for the exhibition "From Lake
Constance to Africa, a long distance travel with ICARUS"},
booktitle = {The Engineering Reality of Virtual Reality 2019, Burlingame, CA, USA,
13-17 January 2019},
publisher = {Society for Imaging Science and Technology},
year = {2019},
url = {https://doi.org/10.2352/ISSN.2470-1173.2019.2.ERVR-177},
doi = {10.2352/ISSN.2470-1173.2019.2.ERVR-177},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ervr/SommerFK0WFFFNW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vinci/0001ASEZS19,
author = {Karsten Klein and
Michael Aichem and
Bj{\"{o}}rn Sommer and
Stefan Erk and
Ying Zhang and
Falk Schreiber},
title = {TEAMwISE: Synchronised Immersive Environments for Exploration and
Analysis of Movement Data},
booktitle = {Proceedings of the 12th International Symposium on Visual Information
Communication and Interaction, {VINCI} 2019, Shanghai, China, September
20-22, 2019},
pages = {9:1--9:5},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3356422.3356450},
doi = {10.1145/3356422.3356450},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vinci/0001ASEZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vinci/0001JMWHBS19,
author = {Karsten Klein and
Sabrina Jaeger and
J{\"{o}}rg Melzheimer and
Bettina Wachter and
Heribert Hofer and
Artur Baltabayev and
Falk Schreiber},
title = {Visual Analytics for Cheetah Behaviour Analysis},
booktitle = {Proceedings of the 12th International Symposium on Visual Information
Communication and Interaction, {VINCI} 2019, Shanghai, China, September
20-22, 2019},
pages = {16:1--16:8},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3356422.3356435},
doi = {10.1145/3356422.3356435},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/vinci/0001JMWHBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/lncs/BinucciBDGHKMSSS19,
author = {Carla Binucci and
Ulrik Brandes and
Tim Dwyer and
Martin Gronemann and
Reinhard von Hanxleden and
Marc J. van Kreveld and
Petra Mutzel and
Marcus Schaefer and
Falk Schreiber and
Bettina Speckmann},
editor = {Bernhard Steffen and
Gerhard J. Woeginger},
title = {10 Reasons to Get Interested in Graph Drawing},
booktitle = {Computing and Software Science - State of the Art and Perspectives},
series = {Lecture Notes in Computer Science},
volume = {10000},
pages = {85--104},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-319-91908-9\_6},
doi = {10.1007/978-3-319-91908-9\_6},
timestamp = {Tue, 12 Sep 2023 07:58:41 +0200},
biburl = {https://dblp.org/rec/series/lncs/BinucciBDGHKMSSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberBGGHKN18,
author = {Falk Schreiber and
Gary D. Bader and
Padraig Gleeson and
Martin Golebiewski and
Michael Hucka and
Sarah M. Keating and
Nicolas Le Nov{\`{e}}re and
Chris J. Myers and
David P. Nickerson and
Bj{\"{o}}rn Sommer and
Dagmar Waltemath},
title = {Specifications of Standards in Systems and Synthetic Biology: Status
and Developments in 2017},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {1},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0013},
doi = {10.1515/JIB-2018-0013},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SchreiberBGGHKN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BiereGDJRFHSKS18,
author = {Niklas Biere and
Mehmood Ghaffar and
Anja Doebbe and
Daniel J{\"{a}}ger and
Nils Rothe and
Benjamin M. Friedrich and
Ralf Hofest{\"{a}}dt and
Falk Schreiber and
Olaf Kruse and
Bj{\"{o}}rn Sommer},
title = {Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas
reinhardtii Cell},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {2},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0003},
doi = {10.1515/JIB-2018-0003},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/BiereGDJRFHSKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vlc/KlapperstuckCGG18,
author = {Matthias Klapperst{\"{u}}ck and
Tobias Czauderna and
Cagatay Goncu and
Jaroslaw Glowacki and
Tim Dwyer and
Falk Schreiber and
Kim Marriott},
title = {ContextuWall: Multi-site collaboration using display walls},
journal = {J. Vis. Lang. Comput.},
volume = {46},
pages = {35--42},
year = {2018},
url = {https://doi.org/10.1016/j.jvlc.2017.10.002},
doi = {10.1016/J.JVLC.2017.10.002},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/vlc/KlapperstuckCGG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ervr/BaltabayevGBBBK18,
author = {Artur Baltabayev and
Alexej Gluschkow and
Johannes Blank and
Gero Birkh{\"{o}}lzer and
Jean B{\"{u}}sche and
Martin Kern and
Fabian Klopfer and
Lisa{-}Maria Mayer and
Gabriel Scheibler and
Karsten Klein and
Falk Schreiber and
Bj{\"{o}}rn Sommer},
editor = {Margaret Dolinsky and
Ian E. McDowall},
title = {Virtual Reality for Sensor Data Visualization and Analysis},
booktitle = {The Engineering Reality of Virtual Reality 2018, Burlingame, CA, USA,
28 January - 1 February 2018},
publisher = {Society for Imaging Science and Technology},
year = {2018},
url = {https://doi.org/10.2352/ISSN.2470-1173.2018.03.ERVR-451},
doi = {10.2352/ISSN.2470-1173.2018.03.ERVR-451},
timestamp = {Wed, 19 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ervr/BaltabayevGBBBK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grapp/Schreiber18,
author = {Falk Schreiber},
editor = {Dominique Bechmann and
Ana Paula Cl{\'{a}}udio and
Jos{\'{e}} Braz},
title = {Immersive Analytics - Methodology and Applications in the Life Sciences},
booktitle = {Proceedings of the 13th International Joint Conference on Computer
Vision, Imaging and Computer Graphics Theory and Applications {(VISIGRAPP}
2018) - Volume 1: GRAPP, Funchal, Madeira, Portugal, January 27-29,
2018},
pages = {9},
publisher = {SciTePress},
year = {2018},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/grapp/Schreiber18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/um/WangBSSR18,
author = {Yunlong Wang and
Corinna Breitinger and
Bj{\"{o}}rn Sommer and
Falk Schreiber and
Harald Reiterer},
editor = {Tanja Mitrovic and
Jie Zhang and
Li Chen and
David Chin},
title = {Comparing Sequential and Temporal Patterns from Human Mobility Data
for Next-Place Prediction},
booktitle = {Adjunct Publication of the 26th Conference on User Modeling, Adaptation
and Personalization, {UMAP} 2018, Singapore, July 08-11, 2018},
pages = {157--164},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3213586.3226212},
doi = {10.1145/3213586.3226212},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/um/WangBSSR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vinci/GhaffarBJKSKS18,
author = {Mehmood Ghaffar and
Niklas Biere and
Daniel J{\"{a}}ger and
Karsten Klein and
Falk Schreiber and
Olaf Kruse and
Bj{\"{o}}rn Sommer},
editor = {Andreas Kerren and
Karsten Klein and
Yi{-}Na Li},
title = {3D Modelling and Visualisation of Heterogeneous Cell Membranes in
Blender},
booktitle = {Proceedings of the 11th International Symposium on Visual Information
Communication and Interaction, {VINCI} 2018, V{\"{a}}xj{\"{o}},
Sweden, August 13-15, 2018},
pages = {64--71},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3231622.3231639},
doi = {10.1145/3231622.3231639},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vinci/GhaffarBJKSKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/lncs/DwyerM00RSST18,
author = {Tim Dwyer and
Kim Marriott and
Tobias Isenberg and
Karsten Klein and
Nathalie Henry Riche and
Falk Schreiber and
Wolfgang Stuerzlinger and
Bruce H. Thomas},
editor = {Kim Marriott and
Falk Schreiber and
Tim Dwyer and
Karsten Klein and
Nathalie Henry Riche and
Takayuki Itoh and
Wolfgang Stuerzlinger and
Bruce H. Thomas},
title = {Immersive Analytics: An Introduction},
booktitle = {Immersive Analytics},
series = {Lecture Notes in Computer Science},
volume = {11190},
pages = {1--23},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-01388-2\_1},
doi = {10.1007/978-3-030-01388-2\_1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/lncs/DwyerM00RSST18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/lncs/CzaudernaHKK0KOSS18,
author = {Tobias Czauderna and
Jason Haga and
Jinman Kim and
Matthias Klapperst{\"{u}}ck and
Karsten Klein and
Torsten W. Kuhlen and
Steffen Oeltze{-}Jafra and
Bj{\"{o}}rn Sommer and
Falk Schreiber},
editor = {Kim Marriott and
Falk Schreiber and
Tim Dwyer and
Karsten Klein and
Nathalie Henry Riche and
Takayuki Itoh and
Wolfgang Stuerzlinger and
Bruce H. Thomas},
title = {Immersive Analytics Applications in Life and Health Sciences},
booktitle = {Immersive Analytics},
series = {Lecture Notes in Computer Science},
volume = {11190},
pages = {289--330},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-01388-2\_10},
doi = {10.1007/978-3-030-01388-2\_10},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/lncs/CzaudernaHKK0KOSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/lncs/11190,
editor = {Kim Marriott and
Falk Schreiber and
Tim Dwyer and
Karsten Klein and
Nathalie Henry Riche and
Takayuki Itoh and
Wolfgang Stuerzlinger and
Bruce H. Thomas},
title = {Immersive Analytics},
series = {Lecture Notes in Computer Science},
volume = {11190},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-01388-2},
doi = {10.1007/978-3-030-01388-2},
isbn = {978-3-030-01387-5},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/lncs/11190.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1807-00546,
author = {Yunlong Wang and
Bj{\"{o}}rn Sommer and
Falk Schreiber and
Harald Reiterer},
title = {Clustering with Temporal Constraints on Spatio-Temporal Data of Human
Mobility},
journal = {CoRR},
volume = {abs/1807.00546},
year = {2018},
url = {http://arxiv.org/abs/1807.00546},
eprinttype = {arXiv},
eprint = {1807.00546},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1807-00546.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/SommerS17,
author = {Bj{\"{o}}rn Sommer and
Falk Schreiber},
title = {Integration and virtual reality exploration of biomedical data with
CmPI and {VANTED}},
journal = {it Inf. Technol.},
volume = {59},
number = {4},
pages = {181},
year = {2017},
url = {https://doi.org/10.1515/itit-2016-0030},
doi = {10.1515/ITIT-2016-0030},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/it/SommerS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtSSA17,
author = {Ralf Hofest{\"{a}}dt and
Falk Schreiber and
Bj{\"{o}}rn Sommer and
Jens Allmer},
title = {Computational miRNomics - Integrative Approaches},
journal = {J. Integr. Bioinform.},
volume = {14},
number = {1},
year = {2017},
url = {https://doi.org/10.1515/jib-2017-0012},
doi = {10.1515/JIB-2017-0012},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/HofestadtSSA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ei-sda/0001BBCCCK0NNSV17,
author = {Bj{\"{o}}rn Sommer and
David G. Barnes and
Sarah E. Boyd and
Tom Chandler and
Maxime Cordeil and
Tobias Czauderna and
Matthias Klapperst{\"{u}}ck and
Karsten Klein and
To{\`{a}}n D. Nguy{\^{e}}n and
Hieu T. Nim and
Kingsley Stephens and
Dany Vohl and
Stephen Jia Wang and
Elliott Wilson and
Yan Zhu and
Jian Li and
Jon McCormack and
Kim Marriott and
Falk Schreiber},
editor = {Andrew J. Woods and
Gregg E. Favalora and
Nicolas S. Holliman and
Takashi Kawai},
title = {3D-Stereoscopic Immersive Analytics Projects at Monash University
and University of Konstanz},
booktitle = {Stereoscopic Displays and Applications XXVIII, Burlingame, CA, USA,
January 29 - February 2, 2017},
pages = {179--187},
publisher = {Society for Imaging Science and Technology},
year = {2017},
url = {https://doi.org/10.2352/ISSN.2470-1173.2017.5.SDA-109},
doi = {10.2352/ISSN.2470-1173.2017.5.SDA-109},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ei-sda/0001BBCCCK0NNSV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/Schreiber17,
author = {Falk Schreiber},
editor = {Maximilian Eibl and
Martin Gaedke},
title = {Analyse und Aufzeigen von Zusammenh{\"{a}}ngen},
booktitle = {47. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Digitale
Kulturen, {INFORMATIK} 2017, Chemnitz, Germany, September 25-29, 2017},
series = {{LNI}},
volume = {{P-275}},
pages = {597},
publisher = {{GI}},
year = {2017},
url = {https://doi.org/10.18420/in2017\_55},
doi = {10.18420/IN2017\_55},
timestamp = {Wed, 13 Jan 2021 11:37:14 +0100},
biburl = {https://dblp.org/rec/conf/gi/Schreiber17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vcbm/NimSKFSNFWS17,
author = {Hieu T. Nim and
Bj{\"{o}}rn Sommer and
Karsten Klein and
Andrea Flack and
Kamran Safi and
M{\'{a}}t{\'{e}} Nagy and
Wolfgang Fiedler and
Martin Wikelski and
Falk Schreiber},
title = {Design Considerations for Immersive Analytics of Bird Movements Obtained
by Miniaturised {GPS} Sensors},
booktitle = {{VCBM} 17: Eurographics Workshop on Visual Computing for Biology and
Medicine, Bremen, Germany, September 7-8, 2017},
pages = {27--31},
publisher = {Eurographics Association},
year = {2017},
url = {https://doi.org/10.2312/vcbm.20171234},
doi = {10.2312/VCBM.20171234},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vcbm/NimSKFSNFWS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vissym/KerrenKLS17,
author = {Andreas Kerren and
Kostiantyn Kucher and
Yuan{-}Fang Li and
Falk Schreiber},
editor = {Anna Puig and
Tobias Isenberg},
title = {MDS-based Visual Survey of Biological Data Visualization Techniques},
booktitle = {19th Eurographics Conference on Visualization, EuroVis 2017 - Posters,
Barcelona, Spain, June 12-16, 2017},
pages = {85--87},
publisher = {Eurographics Association},
year = {2017},
url = {https://doi.org/10.2312/eurp.20171175},
doi = {10.2312/EURP.20171175},
timestamp = {Wed, 01 Jul 2020 13:35:20 +0200},
biburl = {https://dblp.org/rec/conf/vissym/KerrenKLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/MyersBGGHNNSW17,
author = {Chris J. Myers and
Gary D. Bader and
Padraig Gleeson and
Martin Golebiewski and
Michael Hucka and
Nicolas Le Nov{\`{e}}re and
David P. Nickerson and
Falk Schreiber and
Dagmar Waltemath},
title = {A brief history of {COMBINE}},
booktitle = {2017 Winter Simulation Conference, {WSC} 2017, Las Vegas, NV, USA,
December 3-6, 2017},
pages = {884--895},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/WSC.2017.8247840},
doi = {10.1109/WSC.2017.8247840},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/wsc/MyersBGGHNNSW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberBGGHNM16,
author = {Falk Schreiber and
Gary D. Bader and
Padraig Gleeson and
Martin Golebiewski and
Michael Hucka and
Nicolas Le Nov{\`{e}}re and
Chris J. Myers and
David P. Nickerson and
Bj{\"{o}}rn Sommer and
Dagmar Waltemath},
title = {Specifications of Standards in Systems and Synthetic Biology: Status
and Developments in 2016},
journal = {J. Integr. Bioinform.},
volume = {13},
number = {3},
year = {2016},
url = {https://doi.org/10.2390/biecoll-jib-2016-289},
doi = {10.2390/BIECOLL-JIB-2016-289},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SchreiberBGGHNM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/WaltemathKBCHKL16,
author = {Dagmar Waltemath and
Jonathan R. Karr and
Frank T. Bergmann and
Vijayalakshmi Chelliah and
Michael Hucka and
Marcus Krantz and
Wolfram Liebermeister and
Pedro Mendes and
Chris J. Myers and
Pinar Pir and
Begum Alaybeyoglu and
Naveen K. Aranganathan and
Kambiz Baghalian and
Arne T. Bittig and
Paulo E. Pinto Burke and
Matteo Cantarelli and
Yin Hoon Chew and
Rafael S. Costa and
Joseph Cursons and
Tobias Czauderna and
Arthur P. Goldberg and
Harold F. G{\'{o}}mez and
Jens Hahn and
Tuure Hameri and
Daniel F. Hernandez Gardiol and
Denis Kazakiewicz and
Ilya Kiselev and
Vincent Knight{-}Schrijver and
Christian Kn{\"{u}}pfer and
Matthias K{\"{o}}nig and
Daewon Lee and
Audald Lloret{-}Villas and
Nikita Mandrik and
J. Kyle Medley and
Bertrand Moreau and
Hojjat Naderi{-}Meshkin and
Sucheendra K. Palaniappan and
Daniel Priego{-}Espinosa and
Martin Scharm and
Mahesh Sharma and
Kieran Smallbone and
Natalie J. Stanford and
Je{-}Hoon Song and
Tom Theile and
Milenko Tokic and
Namrata Tomar and
Vasundra Tour{\'{e}} and
Jannis Uhlendorf and
Thawfeek M. Varusai and
Leandro H. Watanabe and
Florian Wendland and
Markus Wolfien and
James T. Yurkovich and
Yan Zhu and
Argyris Zardilis and
Anna Zhukova and
Falk Schreiber},
title = {Toward Community Standards and Software for Whole-Cell Modeling},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {63},
number = {10},
pages = {2007--2014},
year = {2016},
url = {https://doi.org/10.1109/TBME.2016.2560762},
doi = {10.1109/TBME.2016.2560762},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbe/WaltemathKBCHKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bdva/KlapperstuckCGG16,
author = {Matthias Klapperst{\"{u}}ck and
Tobias Czauderna and
Cagatay Goncu and
Jaroslaw Glowacki and
Tim Dwyer and
Falk Schreiber and
Kim Marriott},
title = {ContextuWall: Peer Collaboration Using (Large) Displays},
booktitle = {2016 Big Data Visual Analytics, {BDVA} 2016, Sydney, Australia, November
22-25, 2016},
pages = {1--8},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/BDVA.2016.7787047},
doi = {10.1109/BDVA.2016.7787047},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bdva/KlapperstuckCGG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bdva/NimWZSSBW16,
author = {Hieu T. Nim and
Mengyang Wang and
Yujie Zhu and
Bj{\"{o}}rn Sommer and
Falk Schreiber and
Sarah E. Boyd and
Stephen Jia Wang},
title = {Communicating the Effect of Human Behaviour on the Great Barrier Reef
via Mixed Reality Visualisation},
booktitle = {2016 Big Data Visual Analytics, {BDVA} 2016, Sydney, Australia, November
22-25, 2016},
pages = {1--6},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/BDVA.2016.7787046},
doi = {10.1109/BDVA.2016.7787046},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bdva/NimWZSSBW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ei-sda/0001HKCKBCTBS16,
author = {Bj{\"{o}}rn Sommer and
Andreas Hamacher and
Owen Kaluza and
Tobias Czauderna and
Matthias Klapperst{\"{u}}ck and
Niklas Biere and
Marco Civico and
Bruce H. Thomas and
David G. Barnes and
Falk Schreiber},
editor = {Andrew J. Woods and
Nicolas S. Holliman and
Gregg E. Favalora and
Takashi Kawai},
title = {Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic
Tours in Multi-display Environments},
booktitle = {Stereoscopic Displays and Applications XXVII, San Francisco, CA, USA,
February 14-18, 2016},
pages = {1--9},
publisher = {Society for Imaging Science and Technology},
year = {2016},
url = {https://doi.org/10.2352/ISSN.2470-1173.2016.5.SDA-429},
doi = {10.2352/ISSN.2470-1173.2016.5.SDA-429},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ei-sda/0001HKCKBCTBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/KochS16,
author = {Ina Koch and
Falk Schreiber},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Introduction},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {3--18},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_1},
doi = {10.1007/978-1-84996-474-6\_1},
timestamp = {Mon, 05 Feb 2024 20:35:58 +0100},
biburl = {https://dblp.org/rec/series/cb/KochS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/shonan-reports/ItohMSW16,
author = {Takayuki Itoh and
Kim Marriott and
Falk Schreiber and
Uwe W{\"{o}}ssner},
title = {Immersive Analytics: {A} new multidisciplinary initiative to explore
future interaction technologies for data analytics {(NII} Shonan Meeting
2016-2)},
journal = {{NII} Shonan Meet. Rep.},
volume = {2016},
year = {2016},
url = {https://shonan.nii.ac.jp/seminars/074/},
timestamp = {Thu, 04 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/shonan-reports/ItohMSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BakerPSJ15,
author = {Syed Murtuza Baker and
C. Hart Poskar and
Falk Schreiber and
Bj{\"{o}}rn H. Junker},
title = {A unified framework for estimating parameters of kinetic biological
models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {104:1--104:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0500-9},
doi = {10.1186/S12859-015-0500-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BakerPSJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MiSMCDHLNSV15,
author = {Huaiyu Mi and
Falk Schreiber and
Stuart L. Moodie and
Tobias Czauderna and
Emek Demir and
Robin Haw and
Augustin Luna and
Nicolas Le Nov{\`{e}}re and
Anatoly A. Sorokin and
Alice Vill{\'{e}}ger},
title = {Systems Biology Graphical Notation: Activity Flow language Level 1
Version 1.2},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-265},
doi = {10.2390/BIECOLL-JIB-2015-265},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MiSMCDHLNSV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberBGHKNM15,
author = {Falk Schreiber and
Gary D. Bader and
Martin Golebiewski and
Michael Hucka and
Benjamin Kormeier and
Nicolas Le Nov{\`{e}}re and
Chris J. Myers and
David P. Nickerson and
Bj{\"{o}}rn Sommer and
Dagmar Waltemath and
Stephan Weise},
title = {Specifications of Standards in Systems and Synthetic Biology},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-258},
doi = {10.2390/BIECOLL-JIB-2015-258},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SchreiberBGHKNM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SorokinNLCDHMMS15,
author = {Anatoly A. Sorokin and
Nicolas Le Nov{\`{e}}re and
Augustin Luna and
Tobias Czauderna and
Emek Demir and
Robin Haw and
Huaiyu Mi and
Stuart L. Moodie and
Falk Schreiber and
Alice Vill{\'{e}}ger},
title = {Systems Biology Graphical Notation: Entity Relationship language Level
1 Version 2},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-264},
doi = {10.2390/BIECOLL-JIB-2015-264},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SorokinNLCDHMMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bdva/SommerWXCS15,
author = {Bj{\"{o}}rn Sommer and
Stephen Jia Wang and
Lifeng Xu and
Ming Chen and
Falk Schreiber},
title = {Hybrid-Dimensional Visualization and Interaction - Integrating 2D
and 3D Visualization with Semi-Immersive Navigation Techniques},
booktitle = {Big Data Visual Analytics, {BDVA} 2015, Hobart, Australia, September
22-25, 2015},
pages = {65--72},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/BDVA.2015.7314295},
doi = {10.1109/BDVA.2015.7314295},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bdva/SommerWXCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bdva/ChandlerCCDGGKK15,
author = {Tom Chandler and
Maxime Cordeil and
Tobias Czauderna and
Tim Dwyer and
Jaroslaw Glowacki and
Cagatay Goncu and
Matthias Klapperst{\"{u}}ck and
Karsten Klein and
Kim Marriott and
Falk Schreiber and
Elliott Wilson},
title = {Immersive Analytics},
booktitle = {Big Data Visual Analytics, {BDVA} 2015, Hobart, Australia, September
22-25, 2015},
pages = {73--80},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/BDVA.2015.7314296},
doi = {10.1109/BDVA.2015.7314296},
timestamp = {Wed, 26 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bdva/ChandlerCCDGGKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bdva/NimDSB15,
author = {Hieu T. Nim and
Terence Done and
Falk Schreiber and
Sarah E. Boyd},
title = {Interactive Geolocational and Coral Compositional Visualisation of
Great Barrier Reef Heat Stress Data},
booktitle = {Big Data Visual Analytics, {BDVA} 2015, Hobart, Australia, September
22-25, 2015},
pages = {81--87},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/BDVA.2015.7314297},
doi = {10.1109/BDVA.2015.7314297},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bdva/NimDSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cga/KerrenS14,
author = {Andreas Kerren and
Falk Schreiber},
title = {Why Integrate InfoVis and SciVis?: An Example from Systems Biology},
journal = {{IEEE} Computer Graphics and Applications},
volume = {34},
number = {6},
pages = {69--73},
year = {2014},
url = {https://doi.org/10.1109/MCG.2014.122},
doi = {10.1109/MCG.2014.122},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cga/KerrenS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/KochRS14,
author = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Petri Nets in the Biosciences},
journal = {it Inf. Technol.},
volume = {56},
number = {2},
pages = {43--45},
year = {2014},
url = {https://doi.org/10.1515/itit-2014-1042},
doi = {10.1515/ITIT-2014-1042},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/it/KochRS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KlapperstuckS14,
author = {Matthias Klapperst{\"{u}}ck and
Falk Schreiber},
title = {BioNetLink - An Architecture for Working with Network Data},
journal = {J. Integr. Bioinform.},
volume = {11},
number = {2},
year = {2014},
url = {https://doi.org/10.2390/biecoll-jib-2014-241},
doi = {10.2390/BIECOLL-JIB-2014-241},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KlapperstuckS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/14/KerrenS14,
author = {Andreas Kerren and
Falk Schreiber},
editor = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {Network Visualization for Integrative Bioinformatics},
booktitle = {Approaches in Integrative Bioinformatics - Towards the Virtual Cell},
pages = {173--202},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-642-41281-3\_7},
doi = {10.1007/978-3-642-41281-3\_7},
timestamp = {Sun, 25 Oct 2020 22:32:13 +0100},
biburl = {https://dblp.org/rec/books/sp/14/KerrenS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakerPSJ13,
author = {Syed Murtuza Baker and
C. Hart Poskar and
Falk Schreiber and
Bj{\"{o}}rn H. Junker},
title = {An improved constraint filtering technique for inferring hidden states
and parameters of a biological model},
journal = {Bioinform.},
volume = {29},
number = {8},
pages = {1052--1059},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt097},
doi = {10.1093/BIOINFORMATICS/BTT097},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakerPSJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CzaudernaWMS13,
author = {Tobias Czauderna and
Michael Wybrow and
Kim Marriott and
Falk Schreiber},
title = {Conversion of {KEGG} metabolic pathways to {SBGN} maps including automatic
layout},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {250},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-250},
doi = {10.1186/1471-2105-14-250},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CzaudernaWMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VogtCS13,
author = {Torsten Vogt and
Tobias Czauderna and
Falk Schreiber},
title = {Translation of {SBGN} maps: Process Description to Activity Flow},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {115},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-115},
doi = {10.1186/1752-0509-7-115},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VogtCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13,
author = {Finja B{\"{u}}chel and
Nicolas Rodriguez and
Neil Swainston and
Clemens Wrzodek and
Tobias Czauderna and
Roland Keller and
Florian Mittag and
Michael Schubert and
Mihai Glont and
Martin Golebiewski and
Martijn P. van Iersel and
Sarah M. Keating and
Matthias Rall and
Michael Wybrow and
Henning Hermjakob and
Michael Hucka and
Douglas B. Kell and
Wolfgang M{\"{u}}ller and
Pedro Mendes and
Andreas Zell and
Claudine Chaouiya and
Julio Saez{-}Rodriguez and
Falk Schreiber and
Camille Laibe and
Andreas Dr{\"{a}}ger and
Nicolas Le Nov{\`{e}}re},
title = {Path2Models: large-scale generation of computational models from biochemical
pathway maps},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {116},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-116},
doi = {10.1186/1752-0509-7-116},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ivs/JusufiKS13,
author = {Ilir Jusufi and
Andreas Kerren and
Falk Schreiber},
title = {Exploring biological data: Mappings between ontology- and cluster-based
representations},
journal = {Inf. Vis.},
volume = {12},
number = {3-4},
pages = {291--307},
year = {2013},
url = {https://doi.org/10.1177/1473871612468880},
doi = {10.1177/1473871612468880},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ivs/JusufiKS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtKLSSW13,
author = {Ralf Hofest{\"{a}}dt and
Benjamin Kormeier and
Matthias Lange and
Falk Schreiber and
Bj{\"{o}}rn Sommer and
Stephan Weise},
title = {Editorial},
journal = {J. Integr. Bioinform.},
volume = {10},
number = {1},
year = {2013},
url = {https://doi.org/10.2390/biecoll-jib-2013-226},
doi = {10.2390/BIECOLL-JIB-2013-226},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/HofestadtKLSSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/KohlbacherSW13,
author = {Oliver Kohlbacher and
Falk Schreiber and
Matthew O. Ward},
editor = {Andreas Kerren and
Helen C. Purchase and
Matthew O. Ward},
title = {Multivariate Networks in the Life Sciences},
booktitle = {Multivariate Network Visualization - Dagstuhl Seminar {\#}13201, Dagstuhl
Castle, Germany, May 12-17, 2013, Revised Discussions},
series = {Lecture Notes in Computer Science},
volume = {8380},
pages = {61--73},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-06793-3\_4},
doi = {10.1007/978-3-319-06793-3\_4},
timestamp = {Tue, 21 Mar 2023 21:00:28 +0100},
biburl = {https://dblp.org/rec/conf/dagstuhl/KohlbacherSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/SchreiberKBHZ13,
author = {Falk Schreiber and
Andreas Kerren and
Katy B{\"{o}}rner and
Hans Hagen and
Dirk Zeckzer},
editor = {Andreas Kerren and
Helen C. Purchase and
Matthew O. Ward},
title = {Heterogeneous Networks on Multiple Levels},
booktitle = {Multivariate Network Visualization - Dagstuhl Seminar {\#}13201, Dagstuhl
Castle, Germany, May 12-17, 2013, Revised Discussions},
series = {Lecture Notes in Computer Science},
volume = {8380},
pages = {175--206},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-06793-3\_9},
doi = {10.1007/978-3-319-06793-3\_9},
timestamp = {Fri, 19 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/SchreiberKBHZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/ColmseeCGHLMWSS13,
author = {Christian Colmsee and
Tobias Czauderna and
Eva Grafahrend{-}Belau and
Anja Hartmann and
Matthias Lange and
Martin Mascher and
Stephan Weise and
Uwe Scholz and
Falk Schreiber},
editor = {Matthias Horbach},
title = {OPTIMAS-DW, MetaCrop and {VANTED:} {A} Case Study for Data Integration,
Curation and Visualisation in Life Sciences},
booktitle = {43. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Informatik
angepasst an Mensch, Organisation und Umwelt, {INFORMATIK} 2013, Koblenz,
Germany, September 16-20, 2013},
series = {{LNI}},
volume = {{P-220}},
pages = {1834--1840},
publisher = {{GI}},
year = {2013},
url = {https://dl.gi.de/handle/20.500.12116/20615},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/ColmseeCGHLMWSS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/crc/BachmaierBS13,
author = {Christian Bachmaier and
Ulrik Brandes and
Falk Schreiber},
editor = {Roberto Tamassia},
title = {Biological Networks},
booktitle = {Handbook on Graph Drawing and Visualization},
pages = {621--651},
publisher = {Chapman and Hall/CRC},
year = {2013},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/crc/BachmaierBS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrasslerKS12,
author = {Johannes Gr{\"{a}}{\ss}ler and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber},
title = {CentiLib: comprehensive analysis and exploration of network centralities},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1178--1179},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts106},
doi = {10.1093/BIOINFORMATICS/BTS106},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrasslerKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12,
author = {Martijn P. van Iersel and
Alice Vill{\'{e}}ger and
Tobias Czauderna and
Sarah E. Boyd and
Frank T. Bergmann and
Augustin Luna and
Emek Demir and
Anatoly A. Sorokin and
Ugur Dogrus{\"{o}}z and
Yukiko Matsuoka and
Akira Funahashi and
Mirit I. Aladjem and
Huaiyu Mi and
Stuart L. Moodie and
Hiroaki Kitano and
Nicolas Le Nov{\`{e}}re and
Falk Schreiber},
title = {Software support for {SBGN} maps: {SBGN-ML} and LibSBGN},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2016--2021},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts270},
doi = {10.1093/BIOINFORMATICS/BTS270},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RohnHJJS12,
author = {Hendrik Rohn and
Anja Hartmann and
Astrid Junker and
Bj{\"{o}}rn H. Junker and
Falk Schreiber},
title = {FluxMap: {A} {VANTED} add-on for the visual exploration of flux distributions
in biological networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {33},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-33},
doi = {10.1186/1752-0509-6-33},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RohnHJJS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RohnJHGTKCKS12,
author = {Hendrik Rohn and
Astrid Junker and
Anja Hartmann and
Eva Grafahrend{-}Belau and
Hendrik Treutler and
Matthias Klapperst{\"{u}}ck and
Tobias Czauderna and
Christian Klukas and
Falk Schreiber},
title = {{VANTED} v2: a framework for systems biology applications},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {139},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-139},
doi = {10.1186/1752-0509-6-139},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RohnJHGTKCKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ivs/JusufiKKS12,
author = {Ilir Jusufi and
Christian Klukas and
Andreas Kerren and
Falk Schreiber},
title = {Guiding the interactive exploration of metabolic pathway interconnections},
journal = {Inf. Vis.},
volume = {11},
number = {2},
pages = {136--150},
year = {2012},
url = {https://doi.org/10.1177/1473871611405677},
doi = {10.1177/1473871611405677},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ivs/JusufiKKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LotzSW12,
author = {Katrin Lotz and
Falk Schreiber and
R{\"{o}}bbe W{\"{u}}nschiers},
title = {Nutrilyzer: {A} Tool for Deciphering Atomic Stoichiometry of Differentially
Expressed Paralogous Proteins},
journal = {J. Integr. Bioinform.},
volume = {9},
number = {2},
year = {2012},
url = {https://doi.org/10.2390/biecoll-jib-2012-196},
doi = {10.2390/BIECOLL-JIB-2012-196},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/LotzSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MehlhornLSS12,
author = {Hendrik Mehlhorn and
Matthias Lange and
Uwe Scholz and
Falk Schreiber},
title = {IDPredictor: predict database links in biomedical database},
journal = {J. Integr. Bioinform.},
volume = {9},
number = {2},
year = {2012},
url = {https://doi.org/10.2390/biecoll-jib-2012-190},
doi = {10.2390/BIECOLL-JIB-2012-190},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/MehlhornLSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchreiberCCGHJJKSW12,
author = {Falk Schreiber and
Christian Colmsee and
Tobias Czauderna and
Eva Grafahrend{-}Belau and
Anja Hartmann and
Astrid Junker and
Bj{\"{o}}rn H. Junker and
Matthias Klapperst{\"{u}}ck and
Uwe Scholz and
Stephan Weise},
title = {MetaCrop 2.0: managing and exploring information about crop plant
metabolism},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {1173--1177},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1004},
doi = {10.1093/NAR/GKR1004},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchreiberCCGHJJKSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vda/JusufiKAS12,
author = {Ilir Jusufi and
Andreas Kerren and
Vladyslav Aleksakhin and
Falk Schreiber},
editor = {Pak Chung Wong and
David L. Kao and
Ming C. Hao and
Chaomei Chen and
Robert Kosara and
Mark A. Livingston and
Jinah Park and
Ian Roberts},
title = {Visualization of mappings between the gene ontology and cluster trees},
booktitle = {Visualization and Data Analysis 2012, Burlingame, CA, USA, January
23-25, 2012},
series = {{SPIE} Proceedings},
volume = {8294},
pages = {82940N},
publisher = {{SPIE}},
year = {2012},
url = {https://doi.org/10.1117/12.906700},
doi = {10.1117/12.906700},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/vda/JusufiKAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/KerrenS12,
author = {Andreas Kerren and
Falk Schreiber},
editor = {Oliver Rose and
Adelinde M. Uhrmacher},
title = {Toward the role of interaction in visual analytics},
booktitle = {Winter Simulation Conference, {WSC} '12, Berlin, Germany, December
9-12, 2012},
pages = {420:1--420:13},
publisher = {{WSC}},
year = {2012},
url = {https://doi.org/10.1109/WSC.2012.6465208},
doi = {10.1109/WSC.2012.6465208},
timestamp = {Thu, 10 Jun 2021 22:19:08 +0200},
biburl = {https://dblp.org/rec/conf/wsc/KerrenS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RohnKS11,
author = {Hendrik Rohn and
Christian Klukas and
Falk Schreiber},
title = {Creating views on integrated multidomain data},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1839--1845},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr282},
doi = {10.1093/BIOINFORMATICS/BTR282},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RohnKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HartmannCHSS11,
author = {Anja Hartmann and
Tobias Czauderna and
Roberto Hoffmann and
Nils Stein and
Falk Schreiber},
title = {HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {148},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-148},
doi = {10.1186/1471-2105-12-148},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HartmannCHSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/WeiseCJKLSS11,
author = {Stephan Weise and
Jinbo Chen and
Bj{\"{o}}rn H. Junker and
Matthias Klapperst{\"{u}}ck and
Matthias Lange and
Falk Schreiber and
Uwe Scholz},
title = {Das Informationssystem MetaCrop zur Unterst{\"{u}}tzung systembiologischer
Forschung an Kulturpflanzen},
journal = {it Inf. Technol.},
volume = {53},
number = {5},
pages = {234--240},
year = {2011},
url = {https://doi.org/10.1524/itit.2011.0648},
doi = {10.1524/ITIT.2011.0648},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/it/WeiseCJKLSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MehlhornS11,
author = {Hendrik Mehlhorn and
Falk Schreiber},
title = {{DBE2} - Management of experimental data for the {VANTED} system},
journal = {J. Integr. Bioinform.},
volume = {8},
number = {2},
year = {2011},
url = {https://doi.org/10.2390/biecoll-jib-2011-162},
doi = {10.2390/BIECOLL-JIB-2011-162},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MehlhornS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/MehlhornS11,
author = {Hendrik Mehlhorn and
Falk Schreiber},
editor = {Hans{-}Ulrich Hei{\ss} and
Peter Pepper and
Holger Schlingloff and
J{\"{o}}rg Schneider},
title = {Integration and exploration of biological networks},
booktitle = {41. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Informatik
schafft Communities, {INFORMATIK} 2011, Berlin, Germany, October 4-7,
2011, Abstract Proceedings},
series = {{LNI}},
volume = {{P-192}},
pages = {160},
publisher = {{GI}},
year = {2011},
url = {https://dl.gi.de/handle/20.500.12116/18873},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/MehlhornS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imagapp/RohnKS11,
author = {Hendrik Rohn and
Christian Klukas and
Falk Schreiber},
editor = {Gabriela Csurka and
Martin Kraus and
Jos{\'{e}} Braz},
title = {Visual Analytics of Multimodal Biological Data},
booktitle = {{IMAGAPP} {\&} {IVAPP} 2011 - Proceedings of the International
Conference on Imaging Theory and Applications and International Conference
on Information Visualization Theory and Applications, Vilamoura, Algarve,
Portugal, March 5-7, 2011},
pages = {256--261},
publisher = {SciTePress},
year = {2011},
timestamp = {Tue, 05 Mar 2024 11:15:19 +0100},
biburl = {https://dblp.org/rec/conf/imagapp/RohnKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/16,
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-1-84996-474-6},
doi = {10.1007/978-1-84996-474-6},
isbn = {978-1-84996-473-9},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CzaudernaKS10,
author = {Tobias Czauderna and
Christian Klukas and
Falk Schreiber},
title = {Editing, validating and translating of {SBGN} maps},
journal = {Bioinform.},
volume = {26},
number = {18},
pages = {2340--2341},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq407},
doi = {10.1093/BIOINFORMATICS/BTQ407},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CzaudernaKS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScharfePS10,
author = {Michael Scharfe and
Rainer Pielot and
Falk Schreiber},
title = {Fast multi-core based multimodal registration of 2D cross-sections
and 3D datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {20},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-20},
doi = {10.1186/1471-2105-11-20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ScharfePS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KlukasS10,
author = {Christian Klukas and
Falk Schreiber},
title = {Integration of -omics data and networks for biomedical research with
{VANTED}},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {2},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-112},
doi = {10.2390/BIECOLL-JIB-2010-112},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KlukasS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HippeCCGJKSSW10,
author = {Klaus Hippe and
Christian Colmsee and
Tobias Czauderna and
Eva Grafahrend{-}Belau and
Bj{\"{o}}rn H. Junker and
Christian Klukas and
Uwe Scholz and
Falk Schreiber and
Stephan Weise},
title = {Novel Developments of the MetaCrop Information System for Facilitating
Systems Biological Approaches},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {3},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-125},
doi = {10.2390/BIECOLL-JIB-2010-125},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/HippeCCGJKSSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Grafahrend-BelauKJS09,
author = {Eva Grafahrend{-}Belau and
Christian Klukas and
Bj{\"{o}}rn H. Junker and
Falk Schreiber},
title = {FBA-SimVis: interactive visualization of constraint-based metabolic
models},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2755--2757},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp408},
doi = {10.1093/BIOINFORMATICS/BTP408},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Grafahrend-BelauKJS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KashaniAENAAMSM09,
author = {Zahra Razaghi Moghadam Kashani and
Hayedeh Ahrabian and
Elahe Elahi and
Abbas Nowzari{-}Dalini and
Elnaz Saberi Ansari and
Sahar Asadi and
Shahin Mohammadi and
Falk Schreiber and
Ali Masoudi{-}Nejad},
title = {Kavosh: a new algorithm for finding network motifs},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {318},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-318},
doi = {10.1186/1471-2105-10-318},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KashaniAENAAMSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchreiberDMW09,
author = {Falk Schreiber and
Tim Dwyer and
Kim Marriott and
Michael Wybrow},
title = {A generic algorithm for layout of biological networks},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {375},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-375},
doi = {10.1186/1471-2105-10-375},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchreiberDMW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/insk/Schreiber09,
author = {Falk Schreiber},
title = {Analyse und Visualisierung biologischer Netzwerke},
journal = {Inform. Spektrum},
volume = {32},
number = {4},
pages = {301--309},
year = {2009},
url = {https://doi.org/10.1007/s00287-009-0351-8},
doi = {10.1007/S00287-009-0351-8},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/insk/Schreiber09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/WeiseCGJKLSS09,
author = {Stephan Weise and
Christian Colmsee and
Eva Grafahrend{-}Belau and
Bj{\"{o}}rn H. Junker and
Christian Klukas and
Matthias Lange and
Uwe Scholz and
Falk Schreiber},
editor = {Norman W. Paton and
Paolo Missier and
Cornelia Hedeler},
title = {An Integration and Analysis Pipeline for Systems Biology in Crop Plant
Metabolism},
booktitle = {Data Integration in the Life Sciences, 6th International Workshop,
{DILS} 2009, Manchester, UK, July 20-22, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5647},
pages = {196--203},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02879-3\_16},
doi = {10.1007/978-3-642-02879-3\_16},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/WeiseCGJKLSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/FesterSS09,
author = {Thilo Fester and
Falk Schreiber and
Marc Strickert},
editor = {Ivo Grosse and
Steffen Neumann and
Stefan Posch and
Falk Schreiber and
Peter F. Stadler},
title = {CUDA-based Multi-core Implementation of MDS-based Bioinformatics Algorithms},
booktitle = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
Martin Luther University Halle-Wittenberg, Germany},
series = {{LNI}},
volume = {{P-157}},
pages = {67--79},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/20311},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/FesterSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/RohnKS09,
author = {Hendrik Rohn and
Christian Klukas and
Falk Schreiber},
editor = {Ivo Grosse and
Steffen Neumann and
Stefan Posch and
Falk Schreiber and
Peter F. Stadler},
title = {Integration and Visualisation of Multimodal Biological Data},
booktitle = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
Martin Luther University Halle-Wittenberg, Germany},
series = {{LNI}},
volume = {{P-157}},
pages = {105--115},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/20314},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/RohnKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/AlbrechtKKKMPSW09,
author = {Mario Albrecht and
Andreas Kerren and
Karsten Klein and
Oliver Kohlbacher and
Petra Mutzel and
Wolfgang Paul and
Falk Schreiber and
Michael Wybrow},
editor = {David Eppstein and
Emden R. Gansner},
title = {On Open Problems in Biological Network Visualization},
booktitle = {Graph Drawing, 17th International Symposium, {GD} 2009, Chicago, IL,
USA, September 22-25, 2009. Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {5849},
pages = {256--267},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-11805-0\_25},
doi = {10.1007/978-3-642-11805-0\_25},
timestamp = {Sun, 13 Nov 2022 09:57:30 +0100},
biburl = {https://dblp.org/rec/conf/gd/AlbrechtKKKMPSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/WeiseCGJKLSS09,
author = {Stephan Weise and
Christian Colmsee and
Eva Grafahrend{-}Belau and
Bj{\"{o}}rn H. Junker and
Christian Klukas and
Matthias Lange and
Uwe Scholz and
Falk Schreiber},
editor = {Stefan Fischer and
Erik Maehle and
R{\"{u}}diger Reischuk},
title = {Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer
Netzwerke am Beispiel von Kulturpflanzen},
booktitle = {39. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Im Focus
das Leben, {INFORMATIK} 2009, L{\"{u}}beck, Germany, September
28 - October 2, 2009, Proceedings},
series = {{LNI}},
volume = {{P-154}},
pages = {693--697},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/31246},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/WeiseCGJKLSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iv/FungHKSX09,
author = {David Cho Yau Fung and
Seok{-}Hee Hong and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber and
Kai Xu},
editor = {Ebad Banissi and
Liz J. Stuart and
Theodor G. Wyeld and
Mikael Jern and
Gennady L. Andrienko and
Nasrullah Memon and
Reda Alhajj and
Remo Aslak Burkhard and
Georges G. Grinstein and
Dennis P. Groth and
Anna Ursyn and
Jimmy Johansson and
Camilla Forsell and
Urska Cvek and
Marjan Trutschl and
Francis T. Marchese and
Carsten Maple and
Andrew J. Cowell and
Andrew Vande Moere},
title = {Visual Analysis of Overlapping Biological Networks},
booktitle = {13th International Conference on Information Visualisation, {IV} 2009,
15-17 July 2009, Barcelona, Spain},
pages = {337--342},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/IV.2009.55},
doi = {10.1109/IV.2009.55},
timestamp = {Thu, 27 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iv/FungHKSX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/visapp/PielotSMWVSW09,
author = {Rainer Pielot and
Udo Seiffert and
Bertram Manz and
Diana Weier and
Frank Volke and
Falk Schreiber and
Winfriede Weschke},
editor = {Alpesh Ranchordas and
Helder Ara{\'{u}}jo},
title = {Multimodal Registration of NMR-volumes and Histological Cross-sections
of Barley Grains on the Cell Broadband Engine Processor},
booktitle = {{VISAPP} 2009 - Proceedings of the Fourth International Conference
on Computer Vision Theory and Applications, Lisboa, Portugal, February
5-8, 2009 - Volume 1},
pages = {241--244},
publisher = {{INSTICC} Press},
year = {2009},
timestamp = {Fri, 07 Jan 2011 13:47:42 +0100},
biburl = {https://dblp.org/rec/conf/visapp/PielotSMWVSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2009,
editor = {Ivo Grosse and
Steffen Neumann and
Stefan Posch and
Falk Schreiber and
Peter F. Stadler},
title = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
Martin Luther University Halle-Wittenberg, Germany},
series = {{LNI}},
volume = {{P-157}},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/21225},
isbn = {978-3-88579-251-2},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Grafahrend-BelauSHSJGSWK08,
author = {Eva Grafahrend{-}Belau and
Falk Schreiber and
Monika Heiner and
Andrea Sackmann and
Bj{\"{o}}rn H. Junker and
Stefanie Grunwald and
Astrid Speer and
Katja Winder and
Ina Koch},
title = {Modularization of biochemical networks based on classification of
Petri net t-invariants},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-90},
doi = {10.1186/1471-2105-9-90},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Grafahrend-BelauSHSJGSWK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FungHKSX08,
author = {David Cho Yau Fung and
Seok{-}Hee Hong and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber and
Kai Xu},
title = {2.5D Visualisation of Overlapping Biological Networks},
journal = {J. Integr. Bioinform.},
volume = {5},
number = {1},
year = {2008},
url = {https://doi.org/10.2390/biecoll-jib-2008-90},
doi = {10.2390/BIECOLL-JIB-2008-90},
timestamp = {Thu, 27 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/FungHKSX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Grafahrend-BelauWKSJS08,
author = {Eva Grafahrend{-}Belau and
Stephan Weise and
Dirk Kosch{\"{u}}tzki and
Uwe Scholz and
Bj{\"{o}}rn H. Junker and
Falk Schreiber},
title = {MetaCrop: a detailed database of crop plant metabolism},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {954--958},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm835},
doi = {10.1093/NAR/GKM835},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Grafahrend-BelauWKSJS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/DwyerMSSWW08,
author = {Tim Dwyer and
Kim Marriott and
Falk Schreiber and
Peter J. Stuckey and
Michael Woodward and
Michael Wybrow},
title = {Exploration of Networks using overview+detail with Constraint-based
cooperative layout},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {14},
number = {6},
pages = {1293--1300},
year = {2008},
url = {https://doi.org/10.1109/TVCG.2008.130},
doi = {10.1109/TVCG.2008.130},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tvcg/DwyerMSSWW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlukasS07,
author = {Christian Klukas and
Falk Schreiber},
title = {Dynamic exploration and editing of {KEGG} pathway diagrams},
journal = {Bioinform.},
volume = {23},
number = {3},
pages = {344--350},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl611},
doi = {10.1093/BIOINFORMATICS/BTL611},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlukasS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TelgkampKSS07,
author = {Michael Telgkamp and
Dirk Kosch{\"{u}}tzki and
Henning Schw{\"{o}}bbermeyer and
Falk Schreiber},
title = {Community-based Linking of Biological Network Resources: Databases,
Formats and Tools},
journal = {J. Integr. Bioinform.},
volume = {4},
number = {3},
year = {2007},
url = {https://doi.org/10.2390/biecoll-jib-2007-71},
doi = {10.2390/BIECOLL-JIB-2007-71},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/TelgkampKSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JunkerKS06,
author = {Bj{\"{o}}rn H. Junker and
Christian Klukas and
Falk Schreiber},
title = {{VANTED:} {A} system for advanced data analysis and visualization
in the context of biological networks},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {109},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-109},
doi = {10.1186/1471-2105-7-109},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JunkerKS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JunkerKS06a,
author = {Bj{\"{o}}rn H. Junker and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber},
title = {Exploration of biological network centralities with CentiBiN},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {219},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-219},
doi = {10.1186/1471-2105-7-219},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JunkerKS06a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeiseGKKSSJ06,
author = {Stephan Weise and
Ivo Grosse and
Christian Klukas and
Dirk Kosch{\"{u}}tzki and
Uwe Scholz and
Falk Schreiber and
Bj{\"{o}}rn H. Junker},
title = {Meta-All: a system for managing metabolic pathway information},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {465},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-465},
doi = {10.1186/1471-2105-7-465},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeiseGKKSSJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JunkerKS06,
author = {Bj{\"{o}}rn H. Junker and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber},
title = {Kinetic Modelling with the Systems Biology Modelling Environment SyBME},
journal = {J. Integr. Bioinform.},
volume = {3},
number = {1},
year = {2006},
url = {https://doi.org/10.2390/biecoll-jib-2006-18},
doi = {10.2390/BIECOLL-JIB-2006-18},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/JunkerKS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apvis/KlukasSS06,
author = {Christian Klukas and
Falk Schreiber and
Henning Schw{\"{o}}bbermeyer},
editor = {Kazuo Misue and
Kozo Sugiyama and
Jiro Tanaka},
title = {Coordinated perspectives and enhanced force-directed layout for the
analysis of network motifs},
booktitle = {Asia-Pacific Symposium on Information Visualisation, {APVIS} 2006,
Tokyo, Japan, February 1-3, 2006},
series = {{CRPIT}},
volume = {60},
pages = {39--48},
publisher = {Australian Computer Society},
year = {2006},
url = {https://dl.acm.org/citation.cfm?id=1151910},
timestamp = {Wed, 28 Nov 2018 12:57:16 +0100},
biburl = {https://dblp.org/rec/conf/apvis/KlukasSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apvis/DwyerHKSX06,
author = {Tim Dwyer and
Seok{-}Hee Hong and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber and
Kai Xu},
editor = {Kazuo Misue and
Kozo Sugiyama and
Jiro Tanaka},
title = {Visual analysis of network centralities},
booktitle = {Asia-Pacific Symposium on Information Visualisation, {APVIS} 2006,
Tokyo, Japan, February 1-3, 2006},
series = {{CRPIT}},
volume = {60},
pages = {189--197},
publisher = {Australian Computer Society},
year = {2006},
url = {https://dl.acm.org/citation.cfm?id=1151931},
timestamp = {Thu, 27 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/apvis/DwyerHKSX06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchreiberS05,
author = {Falk Schreiber and
Henning Schw{\"{o}}bbermeyer},
title = {MAVisto: a tool for the exploration of network motifs},
journal = {Bioinform.},
volume = {21},
number = {17},
pages = {3572--3574},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti556},
doi = {10.1093/BIOINFORMATICS/BTI556},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchreiberS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jgaa/KlukasKS05,
author = {Christian Klukas and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber},
title = {Graph Pattern Analysis with PatternGravisto},
journal = {J. Graph Algorithms Appl.},
volume = {9},
number = {1},
pages = {19--29},
year = {2005},
url = {https://doi.org/10.7155/jgaa.00098},
doi = {10.7155/JGAA.00098},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jgaa/KlukasKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/SchreiberS05,
author = {Falk Schreiber and
Henning Schw{\"{o}}bbermeyer},
title = {Frequency Concepts and Pattern Detection for the Analysis of Motifs
in Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {89--104},
year = {2005},
url = {https://doi.org/10.1007/11599128\_7},
doi = {10.1007/11599128\_7},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/SchreiberS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/BorisjukHKRS04,
author = {Ljudmilla Borisjuk and
Mohammad{-}Reza Hajirezaei and
Christian Klukas and
Hardy Rolletschek and
Falk Schreiber},
title = {Integrating data from biological experiments into metabolic networks
with the {DBE} information system},
journal = {Silico Biol.},
volume = {5},
number = {2},
pages = {93--102},
year = {2004},
url = {http://content.iospress.com/articles/in-silico-biology/isb00171},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/BorisjukHKRS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrandesDS04,
author = {Ulrik Brandes and
Tim Dwyer and
Falk Schreiber},
title = {Visual Understanding of Metabolic Pathways Across Organisms Using
Layout in Two and a Half Dimensions},
journal = {J. Integr. Bioinform.},
volume = {1},
number = {1},
year = {2004},
url = {https://doi.org/10.2390/biecoll-jib-2004-2},
doi = {10.2390/BIECOLL-JIB-2004-2},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/BrandesDS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acsc/FriedrichS04,
author = {Carsten Friedrich and
Falk Schreiber},
editor = {Vladimir Estivill{-}Castro},
title = {Flexible Layering in Hierarchical Drawings with Nodes of Arbitrary
Size},
booktitle = {Computer Science 2004, Twenty-Seveth Australasian Computer Science
Conference (ACSC2004), Dunedin, New Zealand, January 2004},
series = {{CRPIT}},
volume = {26},
pages = {369--376},
publisher = {Australian Computer Society},
year = {2004},
url = {http://crpit.scem.westernsydney.edu.au/abstracts/CRPITV26Friedrich.html},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/acsc/FriedrichS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/DwyerRS04,
author = {Tim Dwyer and
Hardy Rolletschek and
Falk Schreiber},
editor = {Yi{-}Ping Phoebe Chen},
title = {Representing Experimental Biological Data in Metabolic Networks},
booktitle = {Second Asia-Pacific Bioinformatics Conference {(APBC} 2004), January
18-22, 2004, Dunedin, New Zealand},
series = {{CRPIT}},
volume = {29},
pages = {13--20},
publisher = {Australian Computer Society},
year = {2004},
url = {http://crpit.scem.westernsydney.edu.au/abstracts/CRPITV29Dwyer.html},
timestamp = {Thu, 25 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/apbc/DwyerRS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apvis/DwyerS04,
author = {Tim Dwyer and
Falk Schreiber},
editor = {Neville Churcher and
Clare Churcher},
title = {Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic
Tree Visualisation},
booktitle = {Australasian Symposium on Information Visualisation, InVis.au, Christchurch,
New Zealand, 23-24 January 2004},
series = {{CRPIT}},
volume = {35},
pages = {109--115},
publisher = {Australian Computer Society},
year = {2004},
url = {http://crpit.scem.westernsydney.edu.au/abstracts/CRPITV35Dwyer.html},
timestamp = {Thu, 25 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/apvis/DwyerS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KoschutzkiS04,
author = {Dirk Kosch{\"{u}}tzki and
Falk Schreiber},
editor = {Robert Giegerich and
Jens Stoye},
title = {Comparison of Centralities for Biological Networks},
booktitle = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004),
Bielefeld, Germany, October 4-6, 2004},
series = {{LNI}},
volume = {{P-53}},
pages = {199--206},
publisher = {{GI}},
year = {2004},
url = {https://dl.gi.de/handle/20.500.12116/28667},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/KoschutzkiS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vissym/BrandesDS04,
author = {Ulrik Brandes and
Tim Dwyer and
Falk Schreiber},
editor = {Oliver Deussen and
Charles D. Hansen and
Daniel A. Keim and
Dietmar Saupe},
title = {Visual Triangulation of Network-Based Phylogenetic Trees},
booktitle = {6th Joint Eurographics - {IEEE} {TCVG} Symposium on Visualization,
VisSym 2004, Konstanz, Germany, May 19-21, 2004},
pages = {75--83},
publisher = {Eurographics Association},
year = {2004},
url = {https://doi.org/10.2312/VisSym/VisSym04/075-084},
doi = {10.2312/VISSYM/VISSYM04/075-084},
timestamp = {Wed, 01 Jul 2020 11:42:27 +0200},
biburl = {https://dblp.org/rec/conf/vissym/BrandesDS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/04/BrandenburgFPRS04,
author = {Franz J. Brandenburg and
Michael Forster and
Andreas Pick and
Marcus Raitner and
Falk Schreiber},
editor = {Michael J{\"{u}}nger and
Petra Mutzel},
title = {BioPath - Exploration and Visualization of Biochemical Pathways},
booktitle = {Graph Drawing Software},
pages = {215--235},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-642-18638-7\_10},
doi = {10.1007/978-3-642-18638-7\_10},
timestamp = {Sat, 03 Aug 2019 22:40:46 +0200},
biburl = {https://dblp.org/rec/books/sp/04/BrandenburgFPRS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vlc/Schreiber03,
author = {Falk Schreiber},
title = {Visual comparison of metabolic pathways},
journal = {J. Vis. Lang. Comput.},
volume = {14},
number = {4},
pages = {327--340},
year = {2003},
url = {https://doi.org/10.1016/S1045-926X(03)00030-2},
doi = {10.1016/S1045-926X(03)00030-2},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/vlc/Schreiber03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/Schreiber03,
author = {Falk Schreiber},
editor = {Yi{-}Ping Phoebe Chen},
title = {Comparison of Metabolic Pathways using Constraint Graph Drawing},
booktitle = {First Asia-Pacific Bioinformatics Conference {(APBC} 2003), February
4-7, 2003, Adelaide, Australia},
series = {{CRPIT}},
volume = {19},
pages = {105--110},
publisher = {Australian Computer Society},
year = {2003},
url = {http://crpit.scem.westernsydney.edu.au/abstracts/CRPITV19Schreiber.html},
timestamp = {Thu, 25 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/apbc/Schreiber03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/BrandesDS03,
author = {Ulrik Brandes and
Tim Dwyer and
Falk Schreiber},
editor = {Giuseppe Liotta},
title = {Visualizing Related Metabolic Pathways in Two and a Half Dimensions},
booktitle = {Graph Drawing, 11th International Symposium, {GD} 2003, Perugia, Italy,
September 21-24, 2003, Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {2912},
pages = {111--122},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-24595-7\_10},
doi = {10.1007/978-3-540-24595-7\_10},
timestamp = {Sun, 13 Nov 2022 09:57:34 +0100},
biburl = {https://dblp.org/rec/conf/gd/BrandesDS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/Schreiber02,
author = {Falk Schreiber},
title = {High quality visualization of biochemical pathways in BioPath},
journal = {Silico Biol.},
volume = {2},
number = {2},
pages = {59--73},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00029},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/Schreiber02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/ForsterPRSB02,
author = {Michael Forster and
Andreas Pick and
Marcus Raitner and
Falk Schreiber and
Franz{-}Josef Brandenburg},
title = {The system architecture of the BioPath system},
journal = {Silico Biol.},
volume = {2},
number = {3},
pages = {415--426},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00060},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/ForsterPRSB02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Schreiber01,
author = {Falk Schreiber},
title = {Visualisierung biochemischer Reaktionsnetze},
school = {Passau University, Germany},
year = {2001},
url = {https://opus4.kobv.de/opus4-uni-passau/frontdoor/index/index/docId/18},
urn = {urn:nbn:de:bvb:739-opus-215},
timestamp = {Wed, 20 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/phd/basesearch/Schreiber01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BrandenburgFPRS01,
author = {Franz{-}Josef Brandenburg and
Michael Forster and
Andreas Pick and
Marcus Raitner and
Falk Schreiber},
editor = {Edgar Wingender},
title = {BioPath Visualization of Biochemical Pathways},
booktitle = {Computer science and biology: Proceedings of the German Conference
on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
pages = {11--15},
publisher = {German Research Center for Biotechnology},
year = {2001},
timestamp = {Tue, 15 Mar 2005 13:06:29 +0100},
biburl = {https://dblp.org/rec/conf/gcb/BrandenburgFPRS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/BrandenburgFPRS00,
author = {Franz{-}Josef Brandenburg and
Michael Forster and
Andreas Pick and
Marcus Raitner and
Falk Schreiber},
editor = {Petra Mutzel and
Michael J{\"{u}}nger and
Sebastian Leipert},
title = {BioPath},
booktitle = {Graph Drawing, 9th International Symposium, {GD} 2001 Vienna, Austria,
September 23-26, 2001, Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {2265},
pages = {455--456},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45848-4\_43},
doi = {10.1007/3-540-45848-4\_43},
timestamp = {Sun, 13 Nov 2022 09:57:35 +0100},
biburl = {https://dblp.org/rec/conf/gd/BrandenburgFPRS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KanneST99,
author = {Carl{-}Christian Kanne and
Falk Schreiber and
Dietrich Tr{\"{u}}mbach},
title = {Interactive Biochemical Pathways},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {204--205},
year = {1999},
timestamp = {Fri, 02 Aug 2019 15:48:16 +0200},
biburl = {https://dblp.org/rec/conf/gcb/KanneST99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/BrandenburgJMMS99,
author = {Franz{-}Josef Brandenburg and
Michael J{\"{u}}nger and
Joe Marks and
Petra Mutzel and
Falk Schreiber},
editor = {Jan Kratochv{\'{\i}}l},
title = {Graph-Drawing Contest Report},
booktitle = {Graph Drawing, 7th International Symposium, GD'99, Stir{\'{\i}}n
Castle, Czech Republic, September 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1731},
pages = {400--409},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-46648-7\_41},
doi = {10.1007/3-540-46648-7\_41},
timestamp = {Sun, 13 Nov 2022 09:57:36 +0100},
biburl = {https://dblp.org/rec/conf/gd/BrandenburgJMMS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/KanneST99,
author = {Carl{-}Christian Kanne and
Falk Schreiber and
Dietrich Tr{\"{u}}mbach},
editor = {Jan Kratochv{\'{\i}}l},
title = {Electronic Biochemical Pathways},
booktitle = {Graph Drawing, 7th International Symposium, GD'99, Stir{\'{\i}}n
Castle, Czech Republic, September 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1731},
pages = {418--419},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-46648-7\_44},
doi = {10.1007/3-540-46648-7\_44},
timestamp = {Sun, 13 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gd/KanneST99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/SchreiberS98,
author = {Falk Schreiber and
Konstantin Skodinis},
editor = {Sue Whitesides},
title = {NP-Completeness of Some Tree-Clustering Problems},
booktitle = {Graph Drawing, 6th International Symposium, GD'98, Montr{\'{e}}al,
Canada, August 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1547},
pages = {288--301},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/3-540-37623-2\_22},
doi = {10.1007/3-540-37623-2\_22},
timestamp = {Sun, 13 Nov 2022 09:57:36 +0100},
biburl = {https://dblp.org/rec/conf/gd/SchreiberS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tacas/BeeckBCDFKMSS97,
author = {Michael von der Beeck and
Volker Braun and
Andreas Cla{\ss}en and
Achim Dannecker and
Carsten Friedrich and
Dirk Kosch{\"{u}}tzki and
Tiziana Margaria and
Falk Schreiber and
Bernhard Steffen},
editor = {Ed Brinksma},
title = {Graphs in METAFrame: The Unifying Power of Polymorphism},
booktitle = {Tools and Algorithms for Construction and Analysis of Systems, Third
International Workshop, {TACAS} '97, Enschede, The Netherlands, April
2-4, 1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1217},
pages = {112--129},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/BFb0035384},
doi = {10.1007/BFB0035384},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/tacas/BeeckBCDFKMSS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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