BibTeX records: David E. Shaw

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@article{DBLP:journals/jcisd/GreismanWYGSNMS23,
  author       = {Jack B. Greisman and
                  Lindsay Willmore and
                  Christine Y. Yeh and
                  Fabrizio Giordanetto and
                  Sahar Shahamadtar and
                  Hunter M. Nisonoff and
                  Paul Maragakis and
                  David E. Shaw},
  title        = {Discovery and Validation of the Binding Poses of Allosteric Fragment
                  Hits to Protein Tyrosine Phosphatase 1b: From Molecular Dynamics Simulations
                  to X-ray Crystallography},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {9},
  pages        = {2644--2650},
  year         = {2023},
  url          = {https://doi.org/10.1021/acs.jcim.3c00236},
  doi          = {10.1021/ACS.JCIM.3C00236},
  timestamp    = {Fri, 02 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/GreismanWYGSNMS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/YehIGWMS23,
  author       = {Christine Y. Yeh and
                  Jesus A. Izaguirre and
                  Jack B. Greisman and
                  Lindsay Willmore and
                  Paul Maragakis and
                  David E. Shaw},
  title        = {A Conserved Local Structural Motif Controls the Kinetics of {PTP1B}
                  Catalysis},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {13},
  pages        = {4115--4124},
  year         = {2023},
  url          = {https://doi.org/10.1021/acs.jcim.3c00286},
  doi          = {10.1021/ACS.JCIM.3C00286},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/YehIGWMS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ShanMLKSS22,
  author       = {Yibing Shan and
                  Venkatesh P. Mysore and
                  Abba E. Leffler and
                  Eric T. Kim and
                  Shiori Sagawa and
                  David E. Shaw},
  title        = {How does a small molecule bind at a cryptic binding site?},
  journal      = {PLoS Comput. Biol.},
  volume       = {18},
  number       = {3},
  year         = {2022},
  url          = {https://doi.org/10.1371/journal.pcbi.1009817},
  doi          = {10.1371/JOURNAL.PCBI.1009817},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/ShanMLKSS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpca/ShimGTEGS22,
  author       = {Keun Sup Shim and
                  Brian Greskamp and
                  Brian Towles and
                  Bruce Edwards and
                  J. P. Grossman and
                  David E. Shaw},
  title        = {The Specialized High-Performance Network on Anton 3},
  booktitle    = {{IEEE} International Symposium on High-Performance Computer Architecture,
                  {HPCA} 2022, Seoul, South Korea, April 2-6, 2022},
  pages        = {1211--1223},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.1109/HPCA53966.2022.00092},
  doi          = {10.1109/HPCA53966.2022.00092},
  timestamp    = {Mon, 23 May 2022 16:36:22 +0200},
  biburl       = {https://dblp.org/rec/conf/hpca/ShimGTEGS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-08357,
  author       = {Keun Sup Shim and
                  Brian Greskamp and
                  Brian Towles and
                  Bruce Edwards and
                  J. P. Grossman and
                  David E. Shaw},
  title        = {The Specialized High-Performance Network on Anton 3},
  journal      = {CoRR},
  volume       = {abs/2201.08357},
  year         = {2022},
  url          = {https://arxiv.org/abs/2201.08357},
  eprinttype    = {arXiv},
  eprint       = {2201.08357},
  timestamp    = {Tue, 01 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2201-08357.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hotchips/AdamsBBBBCEFFFG21,
  author       = {Peter J. Adams and
                  Brannon Batson and
                  Alistair Bell and
                  Jhanvi Bhatt and
                  J. Adam Butts and
                  Timothy Correia and
                  Bruce Edwards and
                  Peter Feldmann and
                  Christopher H. Fenton and
                  Anthony Forte and
                  Joseph Gagliardo and
                  Gennette Gill and
                  Maria Gorlatova and
                  Brian Greskamp and
                  J. P. Grossman and
                  Jeremy Hunt and
                  Bryan L. Jackson and
                  Mollie M. Kirk and
                  Jeffrey Kuskin and
                  Roy J. Mader and
                  Richard McGowen and
                  Adam McLaughlin and
                  Mark A. Moraes and
                  Mohamed Nasr and
                  Lawrence J. Nociolo and
                  Lief O'Donnell and
                  Andrew Parker and
                  Jon L. Peticolas and
                  Terry Quan and
                  T. Carl Schwink and
                  Keun Sup Shim and
                  Naseer Siddique and
                  Jochen Spengler and
                  Michael Theobald and
                  Brian Towles and
                  William Vick and
                  Stanley C. Wang and
                  Michael E. Wazlowski and
                  Madeleine J. Weingarten and
                  John M. Williams and
                  David E. Shaw},
  title        = {The {\(\Lambda\)}NTON 3 {ASIC:} a Fire-Breathing Monster for Molecular
                  Dynamics Simulations},
  booktitle    = {{IEEE} Hot Chips 33 Symposium, {HCS} 2021, Palo Alto, CA, USA, August
                  22-24, 2021},
  pages        = {1--22},
  publisher    = {{IEEE}},
  year         = {2021},
  url          = {https://doi.org/10.1109/HCS52781.2021.9567084},
  doi          = {10.1109/HCS52781.2021.9567084},
  timestamp    = {Mon, 25 Oct 2021 18:04:14 +0200},
  biburl       = {https://dblp.org/rec/conf/hotchips/AdamsBBBBCEFFFG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ShawAABBBBBBCDD21,
  author       = {David E. Shaw and
                  Peter J. Adams and
                  Asaph Azaria and
                  Joseph A. Bank and
                  Brannon Batson and
                  Alistair Bell and
                  Michael Bergdorf and
                  Jhanvi Bhatt and
                  J. Adam Butts and
                  Timothy Correia and
                  Robert M. Dirks and
                  Ron O. Dror and
                  Michael P. Eastwood and
                  Bruce Edwards and
                  Amos Even and
                  Peter Feldmann and
                  Michael Fenn and
                  Christopher H. Fenton and
                  Anthony Forte and
                  Joseph Gagliardo and
                  Gennette Gill and
                  Maria Gorlatova and
                  Brian Greskamp and
                  J. P. Grossman and
                  Justin Gullingsrud and
                  Anissa Harper and
                  William Hasenplaugh and
                  Mark Heily and
                  Benjamin Colin Heshmat and
                  Jeremy Hunt and
                  Douglas J. Ierardi and
                  Lev Iserovich and
                  Bryan L. Jackson and
                  Nick P. Johnson and
                  Mollie M. Kirk and
                  John L. Klepeis and
                  Jeffrey S. Kuskin and
                  Kenneth M. Mackenzie and
                  Roy J. Mader and
                  Richard McGowen and
                  Adam McLaughlin and
                  Mark A. Moraes and
                  Mohamed H. Nasr and
                  Lawrence J. Nociolo and
                  Lief O'Donnell and
                  Andrew Parker and
                  Jon L. Peticolas and
                  Goran Pocina and
                  Cristian Predescu and
                  Terry Quan and
                  John K. Salmon and
                  Carl Schwink and
                  Keun Sup Shim and
                  Naseer Siddique and
                  Jochen Spengler and
                  Tamas Szalay and
                  Raymond Tabladillo and
                  Reinhard Tartler and
                  Andrew G. Taube and
                  Michael Theobald and
                  Brian Towles and
                  William Vick and
                  Stanley C. Wang and
                  Michael Wazlowski and
                  Madeleine J. Weingarten and
                  John M. Williams and
                  Kevin A. Yuh},
  editor       = {Bronis R. de Supinski and
                  Mary W. Hall and
                  Todd Gamblin},
  title        = {Anton 3: twenty microseconds of molecular dynamics simulation before
                  lunch},
  booktitle    = {International Conference for High Performance Computing, Networking,
                  Storage and Analysis, {SC} 2021, St. Louis, Missouri, USA, November
                  14-19, 2021},
  pages        = {1},
  publisher    = {{ACM}},
  year         = {2021},
  url          = {https://doi.org/10.1145/3458817.3487397},
  doi          = {10.1145/3458817.3487397},
  timestamp    = {Tue, 08 Nov 2022 16:03:02 +0100},
  biburl       = {https://dblp.org/rec/conf/sc/ShawAABBBBBBCDD21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/JiangFWCS20,
  author       = {Siduo Jiang and
                  Miklos Feher and
                  Christopher I. Williams and
                  Brian Cole and
                  David E. Shaw},
  title        = {AutoPH4: An Automated Method for Generating Pharmacophore Models from
                  Protein Binding Pockets},
  journal      = {J. Chem. Inf. Model.},
  volume       = {60},
  number       = {9},
  pages        = {4326--4338},
  year         = {2020},
  url          = {https://doi.org/10.1021/acs.jcim.0c00121},
  doi          = {10.1021/ACS.JCIM.0C00121},
  timestamp    = {Wed, 01 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/JiangFWCS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/MaragakisNCS20,
  author       = {Paul Maragakis and
                  Hunter M. Nisonoff and
                  Brian Cole and
                  David E. Shaw},
  title        = {A Deep-Learning View of Chemical Space Designed to Facilitate Drug
                  Discovery},
  journal      = {J. Chem. Inf. Model.},
  volume       = {60},
  number       = {10},
  pages        = {4487--4496},
  year         = {2020},
  url          = {https://doi.org/10.1021/acs.jcim.0c00321},
  doi          = {10.1021/ACS.JCIM.0C00321},
  timestamp    = {Wed, 01 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/MaragakisNCS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-02948,
  author       = {Paul Maragakis and
                  Hunter M. Nisonoff and
                  Brian Cole and
                  David E. Shaw},
  title        = {A deep-learning view of chemical space designed to facilitate drug
                  discovery},
  journal      = {CoRR},
  volume       = {abs/2002.02948},
  year         = {2020},
  url          = {https://arxiv.org/abs/2002.02948},
  eprinttype    = {arXiv},
  eprint       = {2002.02948},
  timestamp    = {Mon, 10 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2002-02948.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-06431,
  author       = {John J. Cherian and
                  Andrew G. Taube and
                  Robert T. McGibbon and
                  Panagiotis Angelikopoulos and
                  Guy Blanc and
                  Michael Snarski and
                  Daniel D. Richman and
                  John L. Klepeis and
                  David E. Shaw},
  title        = {Efficient hyperparameter optimization by way of PAC-Bayes bound minimization},
  journal      = {CoRR},
  volume       = {abs/2008.06431},
  year         = {2020},
  url          = {https://arxiv.org/abs/2008.06431},
  eprinttype    = {arXiv},
  eprint       = {2008.06431},
  timestamp    = {Fri, 21 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2008-06431.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/SongJJSLMSG18,
  author       = {Xianqiang Song and
                  Morten {\O}. Jensen and
                  Vishwanath Jogini and
                  Richard A. Stein and
                  Chia{-}Hsueh Lee and
                  Hassane S. Mchaourab and
                  David E. Shaw and
                  Eric Gouaux},
  title        = {Mechanism of {NMDA} receptor channel block by {MK-801} and memantine},
  journal      = {Nat.},
  volume       = {556},
  number       = {7702},
  pages        = {515--519},
  year         = {2018},
  url          = {https://doi.org/10.1038/s41586-018-0039-9},
  doi          = {10.1038/S41586-018-0039-9},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nature/SongJJSLMSG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/GrossmanTGS15,
  author       = {J. P. Grossman and
                  Brian Towles and
                  Brian Greskamp and
                  David E. Shaw},
  title        = {Filtering, Reductions and Synchronization in the Anton 2 Network},
  booktitle    = {2015 {IEEE} International Parallel and Distributed Processing Symposium,
                  {IPDPS} 2015, Hyderabad, India, May 25-29, 2015},
  pages        = {860--870},
  publisher    = {{IEEE} Computer Society},
  year         = {2015},
  url          = {https://doi.org/10.1109/IPDPS.2015.42},
  doi          = {10.1109/IPDPS.2015.42},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ipps/GrossmanTGS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ArkhipovSKS14,
  author       = {Anton Arkhipov and
                  Yibing Shan and
                  Eric T. Kim and
                  David E. Shaw},
  title        = {Membrane Interaction of Bound Ligands Contributes to the Negative
                  Binding Cooperativity of the {EGF} Receptor},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {7},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003742},
  doi          = {10.1371/JOURNAL.PCBI.1003742},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/ArkhipovSKS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isca/TowlesGGS14,
  author       = {Brian Towles and
                  J. P. Grossman and
                  Brian Greskamp and
                  David E. Shaw},
  title        = {Unifying on-chip and inter-node switching within the Anton 2 network},
  booktitle    = {{ACM/IEEE} 41st International Symposium on Computer Architecture,
                  {ISCA} 2014, Minneapolis, MN, USA, June 14-18, 2014},
  pages        = {1--12},
  publisher    = {{IEEE} Computer Society},
  year         = {2014},
  url          = {https://doi.org/10.1109/ISCA.2014.6853238},
  doi          = {10.1109/ISCA.2014.6853238},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isca/TowlesGGS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ShawGBBBCDDEFFGGGHIIKLLLLLKMMMMNPQRSSSSSSTTTTVWY14,
  author       = {David E. Shaw and
                  J. P. Grossman and
                  Joseph A. Bank and
                  Brannon Batson and
                  J. Adam Butts and
                  Jack C. Chao and
                  Martin M. Deneroff and
                  Ron O. Dror and
                  Amos Even and
                  Christopher H. Fenton and
                  Anthony Forte and
                  Joseph Gagliardo and
                  Gennette Gill and
                  Brian Greskamp and
                  C. Richard Ho and
                  Douglas J. Ierardi and
                  Lev Iserovich and
                  Jeffrey Kuskin and
                  Richard H. Larson and
                  Timothy Layman and
                  Li{-}Siang Lee and
                  Adam K. Lerer and
                  Chester Li and
                  Daniel Killebrew and
                  Kenneth M. Mackenzie and
                  Shark Yeuk{-}Hai Mok and
                  Mark A. Moraes and
                  Rolf Mueller and
                  Lawrence J. Nociolo and
                  Jon L. Peticolas and
                  Terry Quan and
                  Daniel Ramot and
                  John K. Salmon and
                  Daniele Paolo Scarpazza and
                  U. Ben Schafer and
                  Naseer Siddique and
                  Christopher W. Snyder and
                  Jochen Spengler and
                  Ping Tak Peter Tang and
                  Michael Theobald and
                  Horia Toma and
                  Brian Towles and
                  Benjamin Vitale and
                  Stanley C. Wang and
                  Cliff Young},
  editor       = {Trish Damkroger and
                  Jack J. Dongarra},
  title        = {Anton 2: Raising the Bar for Performance and Programmability in a
                  Special-Purpose Molecular Dynamics Supercomputer},
  booktitle    = {International Conference for High Performance Computing, Networking,
                  Storage and Analysis, {SC} 2014, New Orleans, LA, USA, November 16-21,
                  2014},
  pages        = {41--53},
  publisher    = {{IEEE} Computer Society},
  year         = {2014},
  url          = {https://doi.org/10.1109/SC.2014.9},
  doi          = {10.1109/SC.2014.9},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/sc/ShawGBBBCDDEFFGGGHIIKLLLLLKMMMMNPQRSSSSSSTTTTVWY14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/asplos/GrossmanKBTDILSTYS13,
  author       = {J. P. Grossman and
                  Jeffrey Kuskin and
                  Joseph A. Bank and
                  Michael Theobald and
                  Ron O. Dror and
                  Douglas J. Ierardi and
                  Richard H. Larson and
                  U. Ben Schafer and
                  Brian Towles and
                  Cliff Young and
                  David E. Shaw},
  editor       = {Vivek Sarkar and
                  Rastislav Bod{\'{\i}}k},
  title        = {Hardware support for fine-grained event-driven computation in Anton
                  2},
  booktitle    = {Architectural Support for Programming Languages and Operating Systems,
                  {ASPLOS} 2013, Houston, TX, USA, March 16-20, 2013},
  pages        = {549--560},
  publisher    = {{ACM}},
  year         = {2013},
  url          = {https://doi.org/10.1145/2451116.2451175},
  doi          = {10.1145/2451116.2451175},
  timestamp    = {Wed, 07 Jul 2021 13:23:08 +0200},
  biburl       = {https://dblp.org/rec/conf/asplos/GrossmanKBTDILSTYS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dac/GrossmanTBS13,
  author       = {J. P. Grossman and
                  Brian Towles and
                  Joseph A. Bank and
                  David E. Shaw},
  title        = {The role of cascade, a cycle-based simulation infrastructure, in designing
                  the anton special-purpose supercomputers},
  booktitle    = {The 50th Annual Design Automation Conference 2013, {DAC} '13, Austin,
                  TX, USA, May 29 - June 07, 2013},
  pages        = {122:1--122:9},
  publisher    = {{ACM}},
  year         = {2013},
  url          = {https://doi.org/10.1145/2463209.2488884},
  doi          = {10.1145/2463209.2488884},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/dac/GrossmanTBS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/Shaw13,
  author       = {David E. Shaw},
  editor       = {Manish Parashar and
                  Jon B. Weissman and
                  Dick H. J. Epema and
                  Renato J. O. Figueiredo},
  title        = {Anton: a special-purpose machine that achieves a hundred-fold speedup
                  in biomolecular simulations},
  booktitle    = {The 22nd International Symposium on High-Performance Parallel and
                  Distributed Computing, HPDC'13, New York, NY, {USA} - June 17 - 21,
                  2013},
  pages        = {129--130},
  publisher    = {{ACM}},
  year         = {2013},
  url          = {https://dl.acm.org/citation.cfm?id=2465528},
  timestamp    = {Mon, 26 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/hpdc/Shaw13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ScarpazzaILMPBCDGKMPSS13,
  author       = {Daniele Paolo Scarpazza and
                  Douglas J. Ierardi and
                  Adam K. Lerer and
                  Kenneth M. Mackenzie and
                  Albert C. Pan and
                  Joseph A. Bank and
                  Edmond Chow and
                  Ron O. Dror and
                  J. P. Grossman and
                  Daniel Killebrew and
                  Mark A. Moraes and
                  Cristian Predescu and
                  John K. Salmon and
                  David E. Shaw},
  title        = {Extending the Generality of Molecular Dynamics Simulations on a Special-Purpose
                  Machine},
  booktitle    = {27th {IEEE} International Symposium on Parallel and Distributed Processing,
                  {IPDPS} 2013, Cambridge, MA, USA, May 20-24, 2013},
  pages        = {933--945},
  publisher    = {{IEEE} Computer Society},
  year         = {2013},
  url          = {https://doi.org/10.1109/IPDPS.2013.93},
  doi          = {10.1109/IPDPS.2013.93},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ipps/ScarpazzaILMPBCDGKMPSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ispass/JiangBMBTSKD13,
  author       = {Nan Jiang and
                  Daniel U. Becker and
                  George Michelogiannakis and
                  James D. Balfour and
                  Brian Towles and
                  David E. Shaw and
                  John Kim and
                  William J. Dally},
  title        = {A detailed and flexible cycle-accurate Network-on-Chip simulator},
  booktitle    = {2012 {IEEE} International Symposium on Performance Analysis of Systems
                  {\&} Software, Austin, TX, USA, 21-23 April, 2013},
  pages        = {86--96},
  publisher    = {{IEEE} Computer Society},
  year         = {2013},
  url          = {https://doi.org/10.1109/ISPASS.2013.6557149},
  doi          = {10.1109/ISPASS.2013.6557149},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ispass/JiangBMBTSKD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BorhaniS12,
  author       = {David W. Borhani and
                  David E. Shaw},
  title        = {The future of molecular dynamics simulations in drug discovery},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {26},
  number       = {1},
  pages        = {15--26},
  year         = {2012},
  url          = {https://doi.org/10.1007/s10822-011-9517-y},
  doi          = {10.1007/S10822-011-9517-Y},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BorhaniS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/micro/DrorGMTCSYBBSKLMS11,
  author       = {Ron O. Dror and
                  J. P. Grossman and
                  Kenneth M. Mackenzie and
                  Brian Towles and
                  Edmond Chow and
                  John K. Salmon and
                  Cliff Young and
                  Joseph A. Bank and
                  Brannon Batson and
                  Martin M. Deneroff and
                  Jeffrey Kuskin and
                  Richard H. Larson and
                  Mark A. Moraes and
                  David E. Shaw},
  title        = {Overcoming Communication Latency Barriers in Massively Parallel Scientific
                  Computation},
  journal      = {{IEEE} Micro},
  volume       = {31},
  number       = {3},
  pages        = {8--19},
  year         = {2011},
  url          = {https://doi.org/10.1109/MM.2011.38},
  doi          = {10.1109/MM.2011.38},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/micro/DrorGMTCSYBBSKLMS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/arith/ButtsTDS10,
  author       = {J. Adam Butts and
                  Ping Tak Peter Tang and
                  Ron O. Dror and
                  David E. Shaw},
  editor       = {Elisardo Antelo and
                  David Hough and
                  Paolo Ienne},
  title        = {Radix-8 Digit-by-Rounding: Achieving High-Performance Reciprocals,
                  Square Roots, and Reciprocal Square Roots},
  booktitle    = {20th {IEEE} Symposium on Computer Arithmetic, {ARITH} 2011, T{\"{u}}bingen,
                  Germany, 25-27 July 2011},
  pages        = {149--158},
  publisher    = {{IEEE} Computer Society},
  year         = {2011},
  url          = {https://doi.org/10.1109/ARITH.2011.28},
  doi          = {10.1109/ARITH.2011.28},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/arith/ButtsTDS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/arith/TangBDS10,
  author       = {Ping Tak Peter Tang and
                  J. Adam Butts and
                  Ron O. Dror and
                  David E. Shaw},
  editor       = {Elisardo Antelo and
                  David Hough and
                  Paolo Ienne},
  title        = {Tight Certification Techniques for Digit-by-Rounding Algorithms with
                  Application to a New 1/sqrt(x) Design},
  booktitle    = {20th {IEEE} Symposium on Computer Arithmetic, {ARITH} 2011, T{\"{u}}bingen,
                  Germany, 25-27 July 2011},
  pages        = {159--168},
  publisher    = {{IEEE} Computer Society},
  year         = {2011},
  url          = {https://doi.org/10.1109/ARITH.2011.29},
  doi          = {10.1109/ARITH.2011.29},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/arith/TangBDS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/SalmonMDS11,
  author       = {John K. Salmon and
                  Mark A. Moraes and
                  Ron O. Dror and
                  David E. Shaw},
  editor       = {Scott A. Lathrop and
                  Jim Costa and
                  William Kramer},
  title        = {Parallel random numbers: as easy as 1, 2, 3},
  booktitle    = {Conference on High Performance Computing Networking, Storage and Analysis,
                  {SC} 2011, Seattle, WA, USA, November 12-18, 2011},
  pages        = {16:1--16:12},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2063384.2063405},
  doi          = {10.1145/2063384.2063405},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/sc/SalmonMDS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/parallel/DrorYS11,
  author       = {Ron O. Dror and
                  Cliff Young and
                  David E. Shaw},
  editor       = {David A. Padua},
  title        = {Anton, {A} Special-Purpose Molecular Simulation Machine},
  booktitle    = {Encyclopedia of Parallel Computing},
  pages        = {60--71},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-0-387-09766-4\_199},
  doi          = {10.1007/978-0-387-09766-4\_199},
  timestamp    = {Wed, 12 Jul 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/reference/parallel/DrorYS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsp/BowersLDS10,
  author       = {Kevin J. Bowers and
                  Ross A. Lippert and
                  Ron O. Dror and
                  David E. Shaw},
  title        = {Improved twiddle access for fast fourier transforms},
  journal      = {{IEEE} Trans. Signal Process.},
  volume       = {58},
  number       = {3},
  pages        = {1122--1130},
  year         = {2010},
  url          = {https://doi.org/10.1109/TSP.2009.2035984},
  doi          = {10.1109/TSP.2009.2035984},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tsp/BowersLDS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fast/TuRMSDS10,
  author       = {Tiankai Tu and
                  Charles A. Rendleman and
                  Patrick J. Miller and
                  Federico D. Sacerdoti and
                  Ron O. Dror and
                  David E. Shaw},
  editor       = {Randal C. Burns and
                  Kimberly Keeton},
  title        = {Accelerating Parallel Analysis of Scientific Simulation Data via Zazen},
  booktitle    = {8th {USENIX} Conference on File and Storage Technologies, San Jose,
                  CA, USA, February 23-26, 2010},
  pages        = {129--142},
  publisher    = {{USENIX}},
  year         = {2010},
  url          = {http://www.usenix.org/events/fast10/tech/full\_papers/tu.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/fast/TuRMSDS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/DrorGMTCSYBBDKLMS10,
  author       = {Ron O. Dror and
                  J. P. Grossman and
                  Kenneth M. Mackenzie and
                  Brian Towles and
                  Edmond Chow and
                  John K. Salmon and
                  Cliff Young and
                  Joseph A. Bank and
                  Brannon Batson and
                  Martin M. Deneroff and
                  Jeffrey Kuskin and
                  Richard H. Larson and
                  Mark A. Moraes and
                  David E. Shaw},
  title        = {Exploiting 162-Nanosecond End-to-End Communication Latency on Anton},
  booktitle    = {Conference on High Performance Computing Networking, Storage and Analysis,
                  {SC} 2010, New Orleans, LA, USA, November 13-19, 2010},
  pages        = {1--12},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/SC.2010.23},
  doi          = {10.1109/SC.2010.23},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/sc/DrorGMTCSYBBDKLMS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/arith/Shaw09,
  author       = {David E. Shaw},
  editor       = {Javier D. Bruguera and
                  Marius Cornea and
                  Debjit Das Sarma and
                  John Harrison},
  title        = {Anton: {A} Specialized Machine for Millisecond-Scale Molecular Dynamics
                  Simulations of Proteins},
  booktitle    = {19th {IEEE} Symposium on Computer Arithmetic, {ARITH} 2009, Portland,
                  Oregon, USA, 9-10 June 2009},
  pages        = {3},
  publisher    = {{IEEE} Computer Society},
  year         = {2009},
  url          = {https://doi.org/10.1109/ARITH.2009.33},
  doi          = {10.1109/ARITH.2009.33},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/arith/Shaw09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ShawDSGMBYDBBCEIKKLLMMPST09,
  author       = {David E. Shaw and
                  Ron O. Dror and
                  John K. Salmon and
                  J. P. Grossman and
                  Kenneth M. Mackenzie and
                  Joseph A. Bank and
                  Cliff Young and
                  Martin M. Deneroff and
                  Brannon Batson and
                  Kevin J. Bowers and
                  Edmond Chow and
                  Michael P. Eastwood and
                  Doug Ierardi and
                  John L. Klepeis and
                  Jeffrey Kuskin and
                  Richard H. Larson and
                  Kresten Lindorff{-}Larsen and
                  Paul Maragakis and
                  Mark A. Moraes and
                  Stefano Piana and
                  Yibing Shan and
                  Brian Towles},
  title        = {Millisecond-scale molecular dynamics simulations on Anton},
  booktitle    = {Proceedings of the {ACM/IEEE} Conference on High Performance Computing,
                  {SC} 2009, November 14-20, 2009, Portland, Oregon, {USA}},
  publisher    = {{ACM}},
  year         = {2009},
  url          = {https://doi.org/10.1145/1654059.1654099},
  doi          = {10.1145/1654059.1654099},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/sc/ShawDSGMBYDBBCEIKKLLMMPST09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ShawDSGMBYDBBCEIKKLLMMPST09a,
  author       = {David E. Shaw and
                  Ron O. Dror and
                  John K. Salmon and
                  J. P. Grossman and
                  Kenneth M. Mackenzie and
                  Joseph A. Bank and
                  Cliff Young and
                  Martin M. Deneroff and
                  Brannon Batson and
                  Kevin J. Bowers and
                  Edmond Chow and
                  Michael P. Eastwood and
                  Doug Ierardi and
                  John L. Klepeis and
                  Jeffrey Kuskin and
                  Richard H. Larson and
                  Kresten Lindorff{-}Larsen and
                  Paul Maragakis and
                  Mark A. Moraes and
                  Stefano Piana and
                  Yibing Shan and
                  Brian Towles},
  title        = {Millisecond-scale molecular dynamics simulations on Anton},
  booktitle    = {Proceedings of the {ACM/IEEE} Conference on High Performance Computing,
                  {SC} 2009, November 14-20, 2009, Portland, Oregon, {USA}},
  publisher    = {{ACM}},
  year         = {2009},
  url          = {https://doi.org/10.1145/1654059.1654126},
  doi          = {10.1145/1654059.1654126},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/sc/ShawDSGMBYDBBCEIKKLLMMPST09a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/YoungBDGSS09,
  author       = {Cliff Young and
                  Joseph A. Bank and
                  Ron O. Dror and
                  J. P. Grossman and
                  John K. Salmon and
                  David E. Shaw},
  title        = {A 32x32x32, spatially distributed 3D {FFT} in four microseconds on
                  Anton},
  booktitle    = {Proceedings of the {ACM/IEEE} Conference on High Performance Computing,
                  {SC} 2009, November 14-20, 2009, Portland, Oregon, {USA}},
  publisher    = {{ACM}},
  year         = {2009},
  url          = {https://doi.org/10.1145/1654059.1654083},
  doi          = {10.1145/1654059.1654083},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/sc/YoungBDGSS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/ShawDDKLSYBBCEGGHIKKLMMMPSSTTW08,
  author       = {David E. Shaw and
                  Martin M. Deneroff and
                  Ron O. Dror and
                  Jeffrey Kuskin and
                  Richard H. Larson and
                  John K. Salmon and
                  Cliff Young and
                  Brannon Batson and
                  Kevin J. Bowers and
                  Jack C. Chao and
                  Michael P. Eastwood and
                  Joseph Gagliardo and
                  J. P. Grossman and
                  C. Richard Ho and
                  Doug Ierardi and
                  Istv{\'{a}}n Kolossv{\'{a}}ry and
                  John L. Klepeis and
                  Timothy Layman and
                  Christine McLeavey and
                  Mark A. Moraes and
                  Rolf Mueller and
                  Edward C. Priest and
                  Yibing Shan and
                  Jochen Spengler and
                  Michael Theobald and
                  Brian Towles and
                  Stanley C. Wang},
  title        = {Anton, a special-purpose machine for molecular dynamics simulation},
  journal      = {Commun. {ACM}},
  volume       = {51},
  number       = {7},
  pages        = {91--97},
  year         = {2008},
  url          = {https://doi.org/10.1145/1364782.1364802},
  doi          = {10.1145/1364782.1364802},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cacm/ShawDDKLSYBBCEGGHIKKLMMMPSSTTW08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/codes/GrossmanYBMISDS08,
  author       = {J. P. Grossman and
                  Cliff Young and
                  Joseph A. Bank and
                  Kenneth M. Mackenzie and
                  Doug Ierardi and
                  John K. Salmon and
                  Ron O. Dror and
                  David E. Shaw},
  editor       = {Catherine H. Gebotys and
                  Grant Martin},
  title        = {Simulation and embedded software development for Anton, a parallel
                  machine with heterogeneous multicore ASICs},
  booktitle    = {Proceedings of the 6th International Conference on Hardware/Software
                  Codesign and System Synthesis, {CODES+ISSS} 2008, Atlanta, GA, USA,
                  October 19-24, 2008},
  pages        = {125--130},
  publisher    = {{ACM}},
  year         = {2008},
  url          = {https://doi.org/10.1145/1450135.1450165},
  doi          = {10.1145/1450135.1450165},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/codes/GrossmanYBMISDS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dac/HoTDDGS08,
  author       = {C. Richard Ho and
                  Michael Theobald and
                  Martin M. Deneroff and
                  Ron O. Dror and
                  Joseph Gagliardo and
                  David E. Shaw},
  editor       = {Limor Fix},
  title        = {Early formal verification of conditional coverage points to identify
                  intrinsically hard-to-verify logic},
  booktitle    = {Proceedings of the 45th Design Automation Conference, {DAC} 2008,
                  Anaheim, CA, USA, June 8-13, 2008},
  pages        = {268--271},
  publisher    = {{ACM}},
  year         = {2008},
  url          = {https://doi.org/10.1145/1391469.1391537},
  doi          = {10.1145/1391469.1391537},
  timestamp    = {Fri, 29 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/dac/HoTDDGS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpca/LarsonSDDYGSKS08,
  author       = {Richard H. Larson and
                  John K. Salmon and
                  Ron O. Dror and
                  Martin M. Deneroff and
                  Cliff Young and
                  J. P. Grossman and
                  Yibing Shan and
                  John L. Klepeis and
                  David E. Shaw},
  title        = {High-throughput pairwise point interactions in Anton, a specialized
                  machine for molecular dynamics simulation},
  booktitle    = {14th International Conference on High-Performance Computer Architecture
                  {(HPCA-14} 2008), 16-20 February 2008, Salt Lake City, UT, {USA}},
  pages        = {331--342},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/HPCA.2008.4658650},
  doi          = {10.1109/HPCA.2008.4658650},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/hpca/LarsonSDDYGSKS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpca/KuskinYGBDDS08,
  author       = {Jeffrey Kuskin and
                  Cliff Young and
                  J. P. Grossman and
                  Brannon Batson and
                  Martin M. Deneroff and
                  Ron O. Dror and
                  David E. Shaw},
  title        = {Incorporating flexibility in Anton, a specialized machine for molecular
                  dynamics simulation},
  booktitle    = {14th International Conference on High-Performance Computer Architecture
                  {(HPCA-14} 2008), 16-20 February 2008, Salt Lake City, UT, {USA}},
  pages        = {343--354},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/HPCA.2008.4658651},
  doi          = {10.1109/HPCA.2008.4658651},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/hpca/KuskinYGBDDS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccd/GrossmanSHITBSWMTYGDDS08,
  author       = {J. P. Grossman and
                  John K. Salmon and
                  C. Richard Ho and
                  Doug Ierardi and
                  Brian Towles and
                  Brannon Batson and
                  Jochen Spengler and
                  Stanley C. Wang and
                  Rolf Mueller and
                  Michael Theobald and
                  Cliff Young and
                  Joseph Gagliardo and
                  Martin M. Deneroff and
                  Ron O. Dror and
                  David E. Shaw},
  title        = {Hierarchical simulation-based verification of Anton, a special-purpose
                  parallel machine},
  booktitle    = {26th International Conference on Computer Design, {ICCD} 2008, 12-15
                  October 2008, Lake Tahoe, CA, USA, Proceedings},
  pages        = {340--347},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/ICCD.2008.4751883},
  doi          = {10.1109/ICCD.2008.4751883},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iccd/GrossmanSHITBSWMTYGDDS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micro/Shaw08,
  author       = {David E. Shaw},
  title        = {Architectures and algorithms for millisecond-scale molecular dynamics
                  simulations of proteins},
  booktitle    = {41st Annual {IEEE/ACM} International Symposium on Microarchitecture
                  {(MICRO-41} 2008), November 8-12, 2008, Lake Como, Italy},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/MICRO.2008.4771773},
  doi          = {10.1109/MICRO.2008.4771773},
  timestamp    = {Tue, 31 May 2022 14:39:58 +0200},
  biburl       = {https://dblp.org/rec/conf/micro/Shaw08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/TuRBDGJKMMSS08,
  author       = {Tiankai Tu and
                  Charles A. Rendleman and
                  David W. Borhani and
                  Ron O. Dror and
                  Justin Gullingsrud and
                  Morten {\O}. Jensen and
                  John L. Klepeis and
                  Paul Maragakis and
                  Patrick J. Miller and
                  Kate A. Stafford and
                  David E. Shaw},
  title        = {A scalable parallel framework for analyzing terascale molecular dynamics
                  simulation trajectories},
  booktitle    = {Proceedings of the {ACM/IEEE} Conference on High Performance Computing,
                  {SC} 2008, November 15-21, 2008, Austin, Texas, {USA}},
  pages        = {56},
  publisher    = {{IEEE/ACM}},
  year         = {2008},
  url          = {https://doi.org/10.1109/SC.2008.5214715},
  doi          = {10.1109/SC.2008.5214715},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/sc/TuRBDGJKMMSS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcphy/BowersDS07,
  author       = {Kevin J. Bowers and
                  Ron O. Dror and
                  David E. Shaw},
  title        = {Zonal methods for the parallel execution of range-limited N-body simulations},
  journal      = {J. Comput. Phys.},
  volume       = {221},
  number       = {1},
  pages        = {303--329},
  year         = {2007},
  url          = {https://doi.org/10.1016/j.jcp.2006.06.014},
  doi          = {10.1016/J.JCP.2006.06.014},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcphy/BowersDS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isca/ShawDDKLSYBBCEGGHIKKLMMMPSSTTW07,
  author       = {David E. Shaw and
                  Martin M. Deneroff and
                  Ron O. Dror and
                  Jeffrey Kuskin and
                  Richard H. Larson and
                  John K. Salmon and
                  Cliff Young and
                  Brannon Batson and
                  Kevin J. Bowers and
                  Jack C. Chao and
                  Michael P. Eastwood and
                  Joseph Gagliardo and
                  J. P. Grossman and
                  C. Richard Ho and
                  Doug Ierardi and
                  Istv{\'{a}}n Kolossv{\'{a}}ry and
                  John L. Klepeis and
                  Timothy Layman and
                  Christine McLeavey and
                  Mark A. Moraes and
                  Rolf Mueller and
                  Edward C. Priest and
                  Yibing Shan and
                  Jochen Spengler and
                  Michael Theobald and
                  Brian Towles and
                  Stanley C. Wang},
  editor       = {Dean M. Tullsen and
                  Brad Calder},
  title        = {Anton, a special-purpose machine for molecular dynamics simulation},
  booktitle    = {34th International Symposium on Computer Architecture {(ISCA} 2007),
                  June 9-13, 2007, San Diego, California, {USA}},
  pages        = {1--12},
  publisher    = {{ACM}},
  year         = {2007},
  url          = {https://doi.org/10.1145/1250662.1250664},
  doi          = {10.1145/1250662.1250664},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isca/ShawDDKLSYBBCEGGHIKKLMMMPSSTTW07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/DixonSKRSF06,
  author       = {Steven L. Dixon and
                  Alexander M. Smondyrev and
                  Eric H. Knoll and
                  Shashidhar N. Rao and
                  David E. Shaw and
                  Richard A. Friesner},
  title        = {{PHASE:} a new engine for pharmacophore perception, 3D {QSAR} model
                  development, and 3D database screening: 1. Methodology and preliminary
                  results},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {20},
  number       = {10-11},
  pages        = {647--671},
  year         = {2006},
  url          = {https://doi.org/10.1007/s10822-006-9087-6},
  doi          = {10.1007/S10822-006-9087-6},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/DixonSKRSF06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/BowersCXDEGKKMSSSS06,
  author       = {Kevin J. Bowers and
                  Edmond Chow and
                  Huafeng Xu and
                  Ron O. Dror and
                  Michael P. Eastwood and
                  Brent A. Gregersen and
                  John L. Klepeis and
                  Istv{\'{a}}n Kolossv{\'{a}}ry and
                  Mark A. Moraes and
                  Federico D. Sacerdoti and
                  John K. Salmon and
                  Yibing Shan and
                  David E. Shaw},
  title        = {Molecular dynamics - Scalable algorithms for molecular dynamics simulations
                  on commodity clusters},
  booktitle    = {Proceedings of the {ACM/IEEE} {SC2006} Conference on High Performance
                  Networking and Computing, November 11-17, 2006, Tampa, FL, {USA}},
  pages        = {84},
  publisher    = {{ACM} Press},
  year         = {2006},
  url          = {https://doi.org/10.1145/1188455.1188544},
  doi          = {10.1145/1188455.1188544},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/sc/BowersCXDEGKKMSSSS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/Shaw05,
  author       = {David E. Shaw},
  title        = {A fast, scalable method for the parallel evaluation of distance-limited
                  pairwise particle interactions},
  journal      = {J. Comput. Chem.},
  volume       = {26},
  number       = {13},
  pages        = {1318--1328},
  year         = {2005},
  url          = {https://doi.org/10.1002/jcc.20267},
  doi          = {10.1002/JCC.20267},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/Shaw05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/Shaw05a,
  author       = {David E. Shaw},
  title        = {Erraturm - {A} fast, scalable method for the parallel evaluation of
                  distance-limited pairwise particle interactions},
  journal      = {J. Comput. Chem.},
  volume       = {26},
  number       = {16},
  pages        = {1803},
  year         = {2005},
  url          = {https://doi.org/10.1002/jcc.20331},
  doi          = {10.1002/JCC.20331},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/Shaw05a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/Shaw98,
  author       = {David Elliot Shaw},
  editor       = {Ashish Gupta and
                  Oded Shmueli and
                  Jennifer Widom},
  title        = {Technology and the Future of Commerce and Finance (Abstract)},
  booktitle    = {VLDB'98, Proceedings of 24rd International Conference on Very Large
                  Data Bases, August 24-27, 1998, New York City, New York, {USA}},
  pages        = {13},
  publisher    = {Morgan Kaufmann},
  year         = {1998},
  url          = {http://www.vldb.org/conf/1998/p013.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/vldb/Shaw98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ai/Shaw87,
  author       = {David Elliot Shaw},
  title        = {On the Range of Applicability of an Artificial Intelligence Machine},
  journal      = {Artif. Intell.},
  volume       = {32},
  number       = {2},
  pages        = {151--172},
  year         = {1987},
  url          = {https://doi.org/10.1016/0004-3702(87)90010-5},
  doi          = {10.1016/0004-3702(87)90010-5},
  timestamp    = {Sat, 27 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ai/Shaw87.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/IbrahimKS87,
  author       = {Hussein Ibrahim and
                  John R. Kender and
                  David Elliot Shaw},
  title        = {Low-Level Image Analysis Tasks on Fine-Grained Tree-Structured {SIMD}
                  Machines},
  journal      = {J. Parallel Distributed Comput.},
  volume       = {4},
  number       = {6},
  pages        = {546--574},
  year         = {1987},
  url          = {https://doi.org/10.1016/0743-7315(87)90030-X},
  doi          = {10.1016/0743-7315(87)90030-X},
  timestamp    = {Sat, 22 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jpdc/IbrahimKS87.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cvgip/IbrahimKS86,
  author       = {Hussein A. H. Ibrahim and
                  John R. Kender and
                  David Elliot Shaw},
  title        = {On the application of massively parallel {SIMD} tree machines to certain
                  intermediate-level vision tasks},
  journal      = {Comput. Vis. Graph. Image Process.},
  volume       = {36},
  number       = {1},
  pages        = {53--75},
  year         = {1986},
  url          = {https://doi.org/10.1016/S0734-189X(86)80029-9},
  doi          = {10.1016/S0734-189X(86)80029-9},
  timestamp    = {Thu, 14 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cvgip/IbrahimKS86.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/HillyerS86,
  author       = {Bruce Hillyer and
                  David Elliot Shaw},
  title        = {Execution of {OPS5} Production Systems on a Massively Parallel Machine},
  journal      = {J. Parallel Distributed Comput.},
  volume       = {3},
  number       = {2},
  pages        = {236--268},
  year         = {1986},
  url          = {https://doi.org/10.1016/0743-7315(86)90006-7},
  doi          = {10.1016/0743-7315(86)90006-7},
  timestamp    = {Sat, 22 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jpdc/HillyerS86.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tse/HillyerSN86,
  author       = {Bruce Hillyer and
                  David Elliot Shaw and
                  Anil Nigam},
  title        = {NON-VON's Performance on Certain Database Benchmarks},
  journal      = {{IEEE} Trans. Software Eng.},
  volume       = {12},
  number       = {4},
  pages        = {577--583},
  year         = {1986},
  url          = {https://doi.org/10.1109/TSE.1986.6312905},
  doi          = {10.1109/TSE.1986.6312905},
  timestamp    = {Wed, 17 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tse/HillyerSN86.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/IbrahimKS86,
  author       = {Hussein Ibrahim and
                  John R. Kender and
                  David Elliot Shaw},
  editor       = {Tom Kehler},
  title        = {{SIMD} Tree Algorithms for Image Correlation},
  booktitle    = {Proceedings of the 5th National Conference on Artificial Intelligence.
                  Philadelphia, PA, USA, August 11-15, 1986. Volume 1: Science},
  pages        = {645--651},
  publisher    = {Morgan Kaufmann},
  year         = {1986},
  url          = {http://www.aaai.org/Library/AAAI/1986/aaai86-109.php},
  timestamp    = {Mon, 04 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/aaai/IbrahimKS86.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/integration/ShawS85,
  author       = {David Elliot Shaw and
                  Theodore Sabety},
  title        = {The multiple-processor {PPS} chip of the {NON-VON} 3 supercomputer},
  journal      = {Integr.},
  volume       = {3},
  number       = {3},
  pages        = {161--174},
  year         = {1985},
  url          = {https://doi.org/10.1016/0167-9260(85)90002-1},
  doi          = {10.1016/0167-9260(85)90002-1},
  timestamp    = {Thu, 20 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/integration/ShawS85.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/Shaw85,
  author       = {David Elliot Shaw},
  editor       = {Aravind K. Joshi},
  title        = {NON-VONs Applicability to Three {AI} Task Areas},
  booktitle    = {Proceedings of the 9th International Joint Conference on Artificial
                  Intelligence. Los Angeles, CA, USA, August 1985},
  pages        = {61--72},
  publisher    = {Morgan Kaufmann},
  year         = {1985},
  url          = {http://ijcai.org/Proceedings/85-1/Papers/013.pdf},
  timestamp    = {Tue, 20 Aug 2019 16:19:04 +0200},
  biburl       = {https://dblp.org/rec/conf/ijcai/Shaw85.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/kimrb85/Shaw85,
  author       = {David Elliot Shaw},
  editor       = {Won Kim and
                  David S. Reiner and
                  Don S. Batory},
  title        = {Relational Query Processing on the Non-Von Supercomputer},
  booktitle    = {Query Processing in Database Systems},
  pages        = {248--258},
  publisher    = {Springer},
  year         = {1985},
  timestamp    = {Sat, 03 Aug 2019 22:43:26 +0200},
  biburl       = {https://dblp.org/rec/books/sp/kimrb85/Shaw85.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/compcon/Shaw84,
  author       = {David Elliot Shaw},
  title        = {{SIMD} and {MSIMD} Variants of the {NON-VON} Supercomputer},
  booktitle    = {COMPCON'84, Digest of Papers, Twenty-Eighth {IEEE} Computer Society
                  International Conference, San Francisco, California, USA, February
                  27 - March 1, 1984},
  pages        = {360--363},
  publisher    = {{IEEE} Computer Society},
  year         = {1984},
  timestamp    = {Tue, 20 Jun 2006 11:18:22 +0200},
  biburl       = {https://dblp.org/rec/conf/compcon/Shaw84.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dac/SabetySM84,
  author       = {Theodore Sabety and
                  David Elliot Shaw and
                  Brian Mathies},
  editor       = {Patricia H. Lambert and
                  Hillel Ofek and
                  Lawrence A. O'Neill and
                  Pat O. Pistilli and
                  Paul Losleben and
                  J. Daniel Nash and
                  Dennis W. Shaklee and
                  Bryan T. Preas and
                  Harvey N. Lerman},
  title        = {The semi-automatic generation of processing element control paths
                  for highly parallel machines},
  booktitle    = {Proceedings of the 21st Design Automation Conference, {DAC} '84, Albuquerque,
                  New Mexico, June 25-27, 1984},
  pages        = {441--446},
  publisher    = {{ACM/IEEE}},
  year         = {1984},
  url          = {http://dl.acm.org/citation.cfm?id=800835},
  timestamp    = {Thu, 12 Aug 2021 08:58:02 +0200},
  biburl       = {https://dblp.org/rec/conf/dac/SabetySM84.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/StolfoMS83,
  author       = {Salvatore J. Stolfo and
                  Daniel P. Miranker and
                  David Elliot Shaw},
  editor       = {Alan Bundy},
  title        = {Architecture and Applications of {DADO:} {A} Large-Scale Parallel
                  Computer for Artificial Intelligence},
  booktitle    = {Proceedings of the 8th International Joint Conference on Artificial
                  Intelligence. Karlsruhe, FRG, August 1983},
  pages        = {850--854},
  publisher    = {William Kaufmann},
  year         = {1983},
  url          = {http://ijcai.org/Proceedings/83-2/Papers/061.pdf},
  timestamp    = {Tue, 20 Aug 2019 16:18:54 +0200},
  biburl       = {https://dblp.org/rec/conf/ijcai/StolfoMS83.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/StolfoS82,
  author       = {Salvatore J. Stolfo and
                  David Elliot Shaw},
  editor       = {David L. Waltz},
  title        = {{DADO:} {A} Tree-Structured Machine Architecture for Production Systems},
  booktitle    = {Proceedings of the National Conference on Artificial Intelligence,
                  Pittsburgh, PA, USA, August 18-20, 1982},
  pages        = {242--246},
  publisher    = {{AAAI} Press},
  year         = {1982},
  url          = {http://www.aaai.org/Library/AAAI/1982/aaai82-058.php},
  timestamp    = {Mon, 04 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/aaai/StolfoS82.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/debu/ShawSIHWA81,
  author       = {David Elliot Shaw and
                  Salvatore J. Stolfo and
                  Hussein Ibrahim and
                  Bruce Hillyer and
                  Gio Wiederhold and
                  J. A. Andrews},
  title        = {The {NON-VON} Database Machine: {A} Brief Overview},
  journal      = {{IEEE} Database Eng. Bull.},
  volume       = {4},
  number       = {2},
  pages        = {41--52},
  year         = {1981},
  url          = {http://sites.computer.org/debull/81DEC-CD.pdf},
  timestamp    = {Tue, 10 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/debu/ShawSIHWA81.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/Shaw81,
  author       = {David Elliot Shaw},
  editor       = {Patrick J. Hayes},
  title        = {{NON-VON:} {A} Parallel Machine Architecture for Knowledge-Based Information
                  Processing},
  booktitle    = {Proceedings of the 7th International Joint Conference on Artificial
                  Intelligence, {IJCAI} '81, Vancouver, BC, Canada, August 24-28, 1981},
  pages        = {961--963},
  publisher    = {William Kaufmann},
  year         = {1981},
  timestamp    = {Tue, 20 Aug 2019 16:16:26 +0200},
  biburl       = {https://dblp.org/rec/conf/ijcai/Shaw81.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigmod/Shaw80a,
  author       = {David Elliot Shaw},
  title        = {A Relational Database Machine Architecture},
  booktitle    = {The Papers of the Fifth Workshop on Computer Architecture for Non-Numeric
                  Processing, Pacific Grove, CA, USA, March 11-14, 1980},
  volume       = {10},
  number       = {4},
  pages        = {84--95},
  publisher    = {{ACM}},
  year         = {1980},
  url          = {https://doi.org/10.1145/800083.802696},
  doi          = {10.1145/800083.802696},
  timestamp    = {Tue, 31 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/sigmod/Shaw80a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/ShawWG75,
  author       = {David E. Shaw and
                  William R. Swartout and
                  C. Cordell Green},
  title        = {Inferring {LISP} Programs From Examples},
  booktitle    = {Advance Papers of the Fourth International Joint Conference on Artificial
                  Intelligence, Tbilisi, Georgia, USSR, September 3-8, 1975},
  pages        = {260--267},
  year         = {1975},
  url          = {http://ijcai.org/Proceedings/75/Papers/037.pdf},
  timestamp    = {Wed, 16 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ijcai/ShawWG75.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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